Citrus Sinensis ID: 027826
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| 224071593 | 217 | predicted protein [Populus trichocarpa] | 0.990 | 0.995 | 0.753 | 3e-88 | |
| 224125094 | 217 | predicted protein [Populus trichocarpa] | 0.990 | 0.995 | 0.753 | 3e-85 | |
| 449459682 | 216 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 1.0 | 0.724 | 1e-82 | |
| 255537091 | 215 | conserved hypothetical protein [Ricinus | 0.986 | 1.0 | 0.715 | 2e-82 | |
| 359474315 | 215 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 1.0 | 0.729 | 2e-80 | |
| 449459680 | 251 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.860 | 0.624 | 3e-77 | |
| 356563266 | 219 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.968 | 0.666 | 1e-74 | |
| 356514146 | 216 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.981 | 0.657 | 3e-74 | |
| 356497169 | 255 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.831 | 0.652 | 4e-74 | |
| 357481907 | 229 | hypothetical protein MTR_5g011800 [Medic | 0.990 | 0.943 | 0.636 | 3e-73 |
| >gi|224071593|ref|XP_002303532.1| predicted protein [Populus trichocarpa] gi|222840964|gb|EEE78511.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 330 bits (846), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 165/219 (75%), Positives = 188/219 (85%), Gaps = 3/219 (1%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETA KAYIDTVKSCE+ ES VAEL+SAMAAGW+A+LIVETWS GG ATS+G
Sbjct: 1 MKLVWSPETALKAYIDTVKSCEVFQESSVAELISAMAAGWNAKLIVETWSQGGILATSIG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LA+ASRHT GRHVC+VPDE SRSEY A+ EAG SP++I GEA EE+++GL IDFLVV
Sbjct: 61 LAIASRHTDGRHVCVVPDELSRSEYEEAMAEAGMSPEIIVGEA--EEVVEGLSGIDFLVV 118
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
DSR++D+ARVLRL LSSRGAVLVCKNA SRN S+F+W+NV+D SRRLVRSV+LPVGKG
Sbjct: 119 DSRQRDYARVLRLTKLSSRGAVLVCKNASSRNGSSFKWRNVVDDGSRRLVRSVFLPVGKG 178
Query: 181 LDIAHVATSGAVSSS-AKGGSRWIKHFDRQSGEEHVIRK 218
LDIAHVATSG SS+ K SRWIKH DRQSGEE+VIRK
Sbjct: 179 LDIAHVATSGGSSSNPGKDESRWIKHVDRQSGEEYVIRK 217
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125094|ref|XP_002329892.1| predicted protein [Populus trichocarpa] gi|222871129|gb|EEF08260.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/219 (75%), Positives = 192/219 (87%), Gaps = 3/219 (1%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYIDTVKSCE+ ES VAEL+SAMAAGW+A+LI+ETWS GG ATS+G
Sbjct: 1 MKLVWSPETASKAYIDTVKSCEVHQESSVAELISAMAAGWNAKLILETWSQGGILATSIG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LA+ASR T GRHVC+VPDE SRS+Y A+GEAG SP++I GEA EE+M+GLV IDF+VV
Sbjct: 61 LAIASRRTDGRHVCIVPDELSRSQYEEAVGEAGISPEIIIGEA--EEVMEGLVGIDFMVV 118
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
DSR++DFA VLR+A LSSRGAVLVCKNA SRN+S+FRW++V+D SRRLVRSV+LPVGKG
Sbjct: 119 DSRQRDFAGVLRVAKLSSRGAVLVCKNASSRNESSFRWRSVVDDGSRRLVRSVFLPVGKG 178
Query: 181 LDIAHVAT-SGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
LDIAHVAT G+ S+S KG SRWIKH DRQSGEE+VIRK
Sbjct: 179 LDIAHVATSGGSSSNSGKGESRWIKHVDRQSGEEYVIRK 217
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459682|ref|XP_004147575.1| PREDICTED: uncharacterized protein LOC101211926 isoform 2 [Cucumis sativus] gi|449517479|ref|XP_004165773.1| PREDICTED: uncharacterized LOC101211926 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/218 (72%), Positives = 184/218 (84%), Gaps = 2/218 (0%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYIDTV+SC+L ESGVAEL+SAMAAGW+A+ IVETWS GGA ATS+G
Sbjct: 1 MKLVWSPETASKAYIDTVQSCDLHQESGVAELISAMAAGWNAQFIVETWSTGGAIATSIG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LAVA RH GGRHVC+VPDERSR EY A+ AG SP+VI GE EE+M+GLV IDFLVV
Sbjct: 61 LAVARRHVGGRHVCVVPDERSRGEYSRAMERAGLSPEVIVGEP--EEVMEGLVGIDFLVV 118
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
DS+R++F+RVL+LANLSSRGAVL+CKNA SR+DS+FRW +V + +RRLVRS +LPVGKG
Sbjct: 119 DSQRRNFSRVLKLANLSSRGAVLICKNANSRSDSSFRWISVTENGTRRLVRSAFLPVGKG 178
Query: 181 LDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
LDIAHVA +G S S G +WIKH DR+SGEE VIRK
Sbjct: 179 LDIAHVAAAGGNSGSGGGKGKWIKHVDRRSGEEFVIRK 216
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537091|ref|XP_002509612.1| conserved hypothetical protein [Ricinus communis] gi|223549511|gb|EEF50999.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 177/218 (81%), Gaps = 3/218 (1%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPE A KAYI+TVKSCE+ ES VAEL+SAMAAGW A LIVETWSHGG ATS+G
Sbjct: 1 MKLVWSPEPALKAYIETVKSCEIFQESSVAELLSAMAAGWKANLIVETWSHGGVIATSIG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LA+ASRH GGRHVC+VPDERSR++Y +GEAG P++I GE EE+ + L IDFLVV
Sbjct: 61 LAIASRHAGGRHVCIVPDERSRTDYAKVMGEAGMLPEIIVGEP--EEVTERLDGIDFLVV 118
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
DSR+KDFARVLRLA LSSRGAVL+CKNA S+ S+FRW+ VL+ S RLVRSV+LPVGKG
Sbjct: 119 DSRQKDFARVLRLAKLSSRGAVLMCKNANSKT-SSFRWRGVLEEGSCRLVRSVFLPVGKG 177
Query: 181 LDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
LDIAHVA SG S K RWIKH D+QSGEEHVIRK
Sbjct: 178 LDIAHVAVSGGNSGPNKTEKRWIKHIDKQSGEEHVIRK 215
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474315|ref|XP_002266637.2| PREDICTED: uncharacterized protein LOC100249883 [Vitis vinifera] gi|296082847|emb|CBI22148.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/218 (72%), Positives = 187/218 (85%), Gaps = 3/218 (1%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYIDTVK+CEL ESGVAELVSAMAAGW+A+LIVETWS GG ATSVG
Sbjct: 1 MKLVWSPETASKAYIDTVKTCELFQESGVAELVSAMAAGWNAQLIVETWSQGGLIATSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LA+ASR++ GRHVCLVPDE+SRSEYV A+GEAG S +VI G+A+D +M GL +DFLVV
Sbjct: 61 LAIASRNSCGRHVCLVPDEQSRSEYVEAMGEAGVSTEVIVGKAED--VMGGLSGVDFLVV 118
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
D RR++F RV RLA LS RGAVLVCKNA S ++++F+W++VLD S RLVR+V+LPVGKG
Sbjct: 119 DCRRRNFQRVFRLAKLSHRGAVLVCKNANSTSNTSFKWRSVLDHGS-RLVRTVFLPVGKG 177
Query: 181 LDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
LDIAHVATSG S S +G SRWI+H DR+SGEE+VIRK
Sbjct: 178 LDIAHVATSGGSSGSTQGQSRWIRHVDRESGEEYVIRK 215
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459680|ref|XP_004147574.1| PREDICTED: uncharacterized protein LOC101211926 isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 184/253 (72%), Gaps = 37/253 (14%)
Query: 1 MKLVWSPETASKAYIDTVKS-----------------------------------CELSH 25
MKLVWSPETASKAYIDTV+S C+L
Sbjct: 1 MKLVWSPETASKAYIDTVQSVRYFLLFSFQFQFPCFFFFFSFMELMIDVFQFCVKCDLHQ 60
Query: 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY 85
ESGVAEL+SAMAAGW+A+ IVETWS GGA ATS+GLAVA RH GGRHVC+VPDERSR EY
Sbjct: 61 ESGVAELISAMAAGWNAQFIVETWSTGGAIATSIGLAVARRHVGGRHVCVVPDERSRGEY 120
Query: 86 VHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVC 145
A+ AG SP+VI GE EE+M+GLV IDFLVVDS+R++F+RVL+LANLSSRGAVL+C
Sbjct: 121 SRAMERAGLSPEVIVGEP--EEVMEGLVGIDFLVVDSQRRNFSRVLKLANLSSRGAVLIC 178
Query: 146 KNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKGLDIAHVATSGAVSSSAKGGSRWIKH 205
KNA SR+DS+FRW +V + +RRLVRS +LPVGKGLDIAHVA +G S S G +WIKH
Sbjct: 179 KNANSRSDSSFRWISVTENGTRRLVRSAFLPVGKGLDIAHVAAAGGNSGSGGGKGKWIKH 238
Query: 206 FDRQSGEEHVIRK 218
DR+SGEE VIRK
Sbjct: 239 VDRRSGEEFVIRK 251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563266|ref|XP_003549885.1| PREDICTED: uncharacterized protein LOC100790687 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/225 (66%), Positives = 179/225 (79%), Gaps = 13/225 (5%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYI+TV+SC + ESGVAELVSAMAAGW+A+LIVETWS GG ATSVG
Sbjct: 1 MKLVWSPETASKAYIETVQSCRIFRESGVAELVSAMAAGWNAQLIVETWSEGGVIATSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDIDFLV 119
LAVA HT GRHVC+VPDERSR+EY +GEAG SP+++ GEA EE+M+GL IDF+V
Sbjct: 61 LAVARTHTCGRHVCVVPDERSRAEYAERMGEAGMSPEIVVGEA--EEVMEGLGGGIDFMV 118
Query: 120 VDSRRKDFARVLRLANLSSRGAVLVCKNAYSRND----STFRWKNVLD--GRSRRLVRSV 173
VDS R +F+RVLRLA LS++GAVL+CKN S + S FRW++VL+ SRR+VRSV
Sbjct: 119 VDSTRGNFSRVLRLAKLSNKGAVLICKNVNSATNIASSSGFRWRSVLEEGSGSRRVVRSV 178
Query: 174 YLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
+LPVGKGLDIAHV+ G S+AK RW KH D+QSGE HVIR+
Sbjct: 179 FLPVGKGLDIAHVSAIGG-GSAAK---RWFKHVDQQSGEVHVIRR 219
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514146|ref|XP_003525767.1| PREDICTED: uncharacterized protein LOC100788494 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 176/222 (79%), Gaps = 10/222 (4%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYI+TV+SC + ESGVAELVSAMAAGW+A+LIVETWS GG ATSVG
Sbjct: 1 MKLVWSPETASKAYIETVQSCRIFRESGVAELVSAMAAGWNAQLIVETWSEGGVMATSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV-DIDFLV 119
LAVA HTGGRHVC+VPDERSRS+Y +GEAG S +++ GEA EE+M+GL ID +V
Sbjct: 61 LAVARTHTGGRHVCVVPDERSRSKYAERMGEAGMSAEIVVGEA--EEVMEGLAGGIDVMV 118
Query: 120 VDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDST---FRWKNVLDGRSRRLVRSVYLP 176
VDS R +F+RVLRLA LS++GAVL+ KN S +S FRW++VL+ SRR+VRSVYLP
Sbjct: 119 VDSTRVNFSRVLRLAKLSNKGAVLISKNVNSATNSATSGFRWRSVLEEGSRRVVRSVYLP 178
Query: 177 VGKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
VGKGL+IAHV+ G S++ K W KH D+QSGE HVIR+
Sbjct: 179 VGKGLEIAHVSAIGGGSAAKK----WFKHVDQQSGEVHVIRR 216
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497169|ref|XP_003517435.1| PREDICTED: uncharacterized protein LOC100778228 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/219 (65%), Positives = 174/219 (79%), Gaps = 7/219 (3%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKL WSPE ASKAYIDTV+SC++ ESGVAE +SAMAAGW+++LIVETWS GG ATSVG
Sbjct: 43 MKLAWSPERASKAYIDTVQSCQVFRESGVAEFISAMAAGWNSQLIVETWSQGGLIATSVG 102
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LA+A HT GRHVC+VPDER+RSEY +GEAG + +++ GE EE+M+GLV +DFLVV
Sbjct: 103 LALARSHTCGRHVCVVPDERARSEYAERMGEAGVTAEIVVGE--PEEVMEGLVGVDFLVV 160
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKN-VLDGRSRRLVRSVYLPVGK 179
DSRRKDF RVLRLA LS++GAVL+CKNA S N F W++ V G SRR+VRS +LPVGK
Sbjct: 161 DSRRKDFTRVLRLAKLSNKGAVLLCKNANS-NSKGFIWRSLVAKGSSRRVVRSAFLPVGK 219
Query: 180 GLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
GLD+AHV+ SG +SS G RWIKH D+ SG+ H IR+
Sbjct: 220 GLDMAHVSASGGNNSS---GHRWIKHVDQHSGDVHFIRR 255
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357481907|ref|XP_003611239.1| hypothetical protein MTR_5g011800 [Medicago truncatula] gi|355512574|gb|AES94197.1| hypothetical protein MTR_5g011800 [Medicago truncatula] gi|388518837|gb|AFK47480.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 179/231 (77%), Gaps = 15/231 (6%)
Query: 1 MKLVWSPETASKAYIDTVKSC----ELSHESGVAELVSAMAAGWDARLIVETWSHGGATA 56
MKLVWSPE A+ +YIDTV++ LS ESG AELVS+MAAGW+A+LIVETWSHGG
Sbjct: 1 MKLVWSPERATNSYIDTVQAITTINHLSSESGAAELVSSMAAGWNAQLIVETWSHGGVIP 60
Query: 57 TSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDID 116
TSVGL++AS HTGGRHVC+VPDE+SRSEY +GEAG SP++I GE EE+MDGLV ID
Sbjct: 61 TSVGLSIASGHTGGRHVCIVPDEQSRSEYAKNMGEAGMSPEIIVGEP--EEVMDGLVGID 118
Query: 117 FLVVDSRRKDFARVLRLANLSSRGAVLVCKNA--YSRNDSTFRWKNVLDGRSRRLVRSVY 174
FLVVDSRRKDF RVLRLA LS +GAVL+CKNA S+ DS + W++V+ SRRLVRSV+
Sbjct: 119 FLVVDSRRKDFTRVLRLAKLSGKGAVLICKNANFISKMDSGYIWRSVVARGSRRLVRSVF 178
Query: 175 LPVGKGLDIAHVATSGAVSSSA----KG---GSRWIKHFDRQSGEEHVIRK 218
LPVGKG+ +AH + +G +S A KG +RWIKH D++SG+ H IRK
Sbjct: 179 LPVGKGIHMAHFSAAGGDNSVAAMKHKGRAVHNRWIKHVDQRSGDVHFIRK 229
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| TAIR|locus:2050842 | 215 | AT2G45360 "AT2G45360" [Arabido | 0.986 | 1.0 | 0.591 | 2.1e-61 | |
| TAIR|locus:2026202 | 224 | AT1G62840 "AT1G62840" [Arabido | 0.990 | 0.964 | 0.553 | 2.5e-56 | |
| TAIR|locus:2101911 | 218 | AT3G60780 "AT3G60780" [Arabido | 0.995 | 0.995 | 0.525 | 2.1e-54 | |
| TAIR|locus:2034645 | 212 | AT1G12320 "AT1G12320" [Arabido | 0.940 | 0.966 | 0.497 | 4.2e-47 | |
| TAIR|locus:2167913 | 236 | AT5G62280 "AT5G62280" [Arabido | 0.922 | 0.851 | 0.300 | 1.3e-15 |
| TAIR|locus:2050842 AT2G45360 "AT2G45360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 129/218 (59%), Positives = 154/218 (70%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETAS AYIDTVKSC+ ESGVAE +SA AAGW+ARLIVETWS G TSVG
Sbjct: 1 MKLVWSPETASDAYIDTVKSCKSDKESGVAEFLSATAAGWNARLIVETWSRGDPITTSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120
LAVA+ HTGGRHVC+VPDE+S+ EYV A+ + V+ GE+ E M+ +DFLVV
Sbjct: 61 LAVAATHTGGRHVCIVPDEQSKLEYVLAMRGFVTTEVVVVGESV-ENTMEEFPGVDFLVV 119
Query: 121 DSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGKG 180
DS+R++F R LR A LS++GAVLVCKNA R S F+W +VL R R+VRSV+LPVG G
Sbjct: 120 DSKRREFVRTLRFAKLSNKGAVLVCKNAMHRAISGFKWHDVLK-RGTRVVRSVFLPVGSG 178
Query: 181 LDIAHVXXXXXXXXXXXXXXRWIKHFDRQSGEEHVIRK 218
LDI HV RWI+H D SGEEH+ R+
Sbjct: 179 LDIVHVGATGRGDSRNLRS-RWIRHVDHLSGEEHLFRR 215
|
|
| TAIR|locus:2026202 AT1G62840 "AT1G62840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 125/226 (55%), Positives = 150/226 (66%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKL+WSPETASKAYIDTVKSCE G AELV+AMAAGW+A LIVETWS G A SVG
Sbjct: 1 MKLIWSPETASKAYIDTVKSCENLGTPGAAELVAAMAAGWNANLIVETWSEGETIAISVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEEL---MDGLVDI 115
L +ASRHT GRH+C+VP+ RS++ Y+ A+ E S P+ I + EEL M L I
Sbjct: 61 LNIASRHTNGRHICIVPNARSQTAYLQAMAEQSCSNLPETIIMNEEGEELEHTMQTLQGI 120
Query: 116 DFLVVDSRRKDFA-RVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVY 174
DFLVVD +KDFA VLR A SRGAV+VC++ Y R+ S F W R+ +VR+V
Sbjct: 121 DFLVVDWDQKDFAANVLRNAVFGSRGAVVVCRSGYRRSTSCFSWTKAFSDRN--VVRTVT 178
Query: 175 LPVGKGLDIAHVXXXXXXXXXXXXXXR--WIKHFDRQSGEEHVIRK 218
LPV GL+IAHV + WIKHFD++SGEEHVIRK
Sbjct: 179 LPVSGGLEIAHVAAARSSGKSDNNSNKRKWIKHFDQRSGEEHVIRK 224
|
|
| TAIR|locus:2101911 AT3G60780 "AT3G60780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 115/219 (52%), Positives = 146/219 (66%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
M+LVWSPETAS AYI TV+SC+ +S VAE +SA AAGW+ RLIVETWS G ATSVG
Sbjct: 1 MRLVWSPETASNAYIHTVRSCKSYRDSSVAEFLSATAAGWNTRLIVETWSRGDPIATSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD-EELMDGLVDIDFLV 119
LAVA+ HT GRHVC+VPDE SRSEY + A S D E++++ + +DF+V
Sbjct: 61 LAVAAIHTCGRHVCIVPDEESRSEYEAVMRGAVTSDSTEVMVLDSAEDVVERISGVDFMV 120
Query: 120 VDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPVGK 179
VDS+R +F L LA S GAVLVCKNA ++ F+W+ +L R R+VRSV+LPVG+
Sbjct: 121 VDSKRHEFVNALGLAKTSKMGAVLVCKNATLKSIPGFKWQGLLR-RGTRVVRSVFLPVGR 179
Query: 180 GLDIAHVXXXXXXXXXXXXXXRWIKHFDRQSGEEHVIRK 218
GL+I HV RWIKH D +SGEEH+ ++
Sbjct: 180 GLEIVHVGASGGGNGLRKIPSRWIKHIDPRSGEEHLFKR 218
|
|
| TAIR|locus:2034645 AT1G12320 "AT1G12320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 109/219 (49%), Positives = 140/219 (63%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYIDTVKSCE AEL++AMAAGW+ +LIVETWS G A A+S+G
Sbjct: 1 MKLVWSPETASKAYIDTVKSCENLETPDAAELIAAMAAGWNVKLIVETWSEGDAIASSIG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS---PQVITGEADDEELMDGLVDIDF 117
L VAS+H +H+C+V + RS S Y+ A+ E+ P+ I E + + M L +DF
Sbjct: 61 LNVASKHANAKHICIVQNSRSESAYLQAIQESSSPLNFPETIVAE-EPGKAMKKLQGVDF 119
Query: 118 LVVDSRRKDFARV-LRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLP 176
LVVD R K+FA L+ A +RGAV+VC+N YS + VL R R++VR+V LP
Sbjct: 120 LVVDWRNKEFAAAALKNAAFGNRGAVVVCRNGYSS------LRRVL--RDRKVVRTVTLP 171
Query: 177 VGKGLDIAHVXXXXXXXXXXXXXXRWIKHFDRQSGEEHV 215
V G++IAHV RWI H D++SGEEHV
Sbjct: 172 VTGGIEIAHVAARNSGKSGNNKR-RWITHVDQRSGEEHV 209
|
|
| TAIR|locus:2167913 AT5G62280 "AT5G62280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 70/233 (30%), Positives = 113/233 (48%)
Query: 5 WSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATS-VGLAV 63
WS E A+KAY+ T+K+ + + E VAE +SA+AAG AR I + G A A V L
Sbjct: 4 WSAENATKAYLSTLKTDQRTKEPNVAEFISALAAGNSARKIAVACA-GAANADILVALIA 62
Query: 64 ASRHTGGRHVCLVP--DERSRSEYVHALGEAGFSPQVITGEADDEELMDG-LVDIDFLVV 120
A+ T G+ VC++ +E S+ + E Q + GE++D+ L++ + DF++V
Sbjct: 63 AANQTRGQVVCVLRGIEELIISQKMLEPSEI-HQIQFVVGESNDDTLINNHFGEADFVLV 121
Query: 121 DSRRKDFARVL-RLANLSSRGA---------VLVCKNAYSRNDSTFRWKNVLDGRSRRLV 170
D ++ ++ ++ N A V+V NA+SR W+ DGR
Sbjct: 122 DCNLENHQEIVGKILNHHEENARTGGGSGVAVVVGYNAFSRGS----WR-FSDGR----- 171
Query: 171 RSVYLPVGKGLDIAHVXXXXXXXXXXXXX------XRWIKHFDRQSGEEHVIR 217
++ +LP+G+GL + V RW+ D+ +GEEHV R
Sbjct: 172 KTQFLPIGEGLLVTRVNDNQKMMMKNHHRDQVMRKSRWVVKVDKCTGEEHVFR 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 218 204 0.00094 111 3 11 22 0.48 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 608 (65 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.47u 0.12s 17.59t Elapsed: 00:00:00
Total cpu time: 17.47u 0.12s 17.59t Elapsed: 00:00:00
Start: Sat May 11 11:17:05 2013 End: Sat May 11 11:17:05 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 218 | |||
| pfam07279 | 218 | pfam07279, DUF1442, Protein of unknown function (D | 7e-99 |
| >gnl|CDD|115904 pfam07279, DUF1442, Protein of unknown function (DUF1442) | Back alignment and domain information |
|---|
Score = 286 bits (732), Expect = 7e-99
Identities = 135/221 (61%), Positives = 162/221 (73%), Gaps = 6/221 (2%)
Query: 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG 60
MKLVWSPETASKAYIDTVKSCE G AEL++AMAAGW+ARLIVETWS G ATSVG
Sbjct: 1 MKLVWSPETASKAYIDTVKSCENLGTPGAAELLAAMAAGWNARLIVETWSEGDPIATSVG 60
Query: 61 LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDIDFL 118
L VASRHT GRH+C+VP+ERS+S Y+ A+ E S P+ I GE + E M+ L +DFL
Sbjct: 61 LNVASRHTNGRHICIVPNERSQSAYLQAMREQSTSNLPETIVGE-ELEHTMETLQGVDFL 119
Query: 119 VVDSRRKDF-ARVLRLANLSSRGAVLVCKNAYSRNDSTFRWKNVLDGRSRRLVRSVYLPV 177
VVD +RK+F A LR A +RGAV+VC+N Y R+ S F W VL R RR+VR+V LPV
Sbjct: 120 VVDWKRKEFAANALRNAKFGNRGAVVVCRNGYRRSISGFSWTKVL--RDRRVVRTVTLPV 177
Query: 178 GKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218
G GL+IAHVA +G+ SS RWIKH D++SGEEHV R+
Sbjct: 178 GGGLEIAHVAAAGSGGSSNNNKRRWIKHVDQRSGEEHVFRR 218
|
This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Length = 218 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 100.0 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 100.0 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 100.0 | |
| PLN02476 | 278 | O-methyltransferase | 100.0 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 100.0 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 100.0 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.58 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.32 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.31 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.26 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.25 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.24 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.21 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.19 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.19 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.17 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.16 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.16 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.15 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.1 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.09 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.05 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.05 | |
| PLN02366 | 308 | spermidine synthase | 98.97 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.93 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.92 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.92 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.9 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.89 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.85 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.84 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.83 | |
| PLN02823 | 336 | spermine synthase | 98.83 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.82 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.82 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.75 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.74 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.71 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.71 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.65 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 98.6 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.6 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.6 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.58 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.57 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.57 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.54 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.54 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.54 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.54 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.53 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.53 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.49 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.48 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 98.48 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.48 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.47 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.47 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.46 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.46 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.46 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.46 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.42 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.41 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.4 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.39 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.38 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 98.37 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.36 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.35 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.35 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.35 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.35 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.35 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.32 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.3 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.3 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.29 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.29 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.28 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.24 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.23 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.22 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.22 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.21 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.19 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.18 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.17 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.15 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.14 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.14 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.12 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.11 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.09 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.09 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.09 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.06 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.05 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.05 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.02 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.01 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.0 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 97.99 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.99 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 97.99 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.99 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.95 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 97.95 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.94 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.92 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.91 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 97.87 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.86 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.85 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.84 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.84 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.83 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.79 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.78 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.77 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 97.77 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.74 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.74 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.74 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 97.73 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 97.69 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.68 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.68 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 97.67 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 97.65 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.62 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.57 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.55 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.53 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.51 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.49 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 97.49 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.46 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.44 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.4 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.39 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.38 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 97.36 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.36 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.31 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.18 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.15 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.14 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.12 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.11 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.09 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.04 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.04 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 97.01 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 96.99 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 96.97 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 96.91 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 96.82 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.8 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.74 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 96.68 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.65 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 96.63 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.56 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.49 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.44 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.34 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.33 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.26 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 96.09 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.06 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.04 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.04 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.03 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 95.99 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 95.99 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.54 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 95.33 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 95.18 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.04 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.97 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 94.94 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.92 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.91 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 94.89 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.79 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 94.7 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 94.61 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 94.47 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.24 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 93.49 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 93.47 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 93.46 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 93.37 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.37 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.92 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 92.71 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 92.54 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 92.48 | |
| PHA01634 | 156 | hypothetical protein | 92.39 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 92.04 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.02 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 91.91 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 91.89 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 91.67 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 91.67 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 91.33 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.12 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.71 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 90.5 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 90.27 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.64 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 89.61 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 88.98 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 88.66 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 87.73 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 87.54 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 87.43 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 86.94 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 86.52 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 86.48 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 86.31 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 85.82 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 85.76 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 85.73 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 85.6 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 85.47 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 85.45 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 85.25 | |
| PRK05720 | 344 | mtnA methylthioribose-1-phosphate isomerase; Revie | 85.07 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 84.59 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 84.25 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 83.89 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 83.86 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 82.81 | |
| TIGR01627 | 225 | A_thal_3515 uncharacterized plant-specific domain | 82.78 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 82.67 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 82.13 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 81.37 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 81.22 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 81.18 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 80.87 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 80.31 |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=381.25 Aligned_cols=214 Identities=63% Similarity=1.072 Sum_probs=199.0
Q ss_pred CccccChhhhHHHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCc
Q 027826 1 MKLVWSPETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDER 80 (218)
Q Consensus 1 ~~~~~~~~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~ 80 (218)
||+.||||+|++|||+||++|+...+|++++||+.|++.++||.|+|+.+..|.+.|+||||.|+.+|+|++||+++..+
T Consensus 1 mkl~WSpe~AtkAYl~Tvk~c~~~~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~ 80 (218)
T PF07279_consen 1 MKLVWSPENATKAYLDTVKMCKKFKEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQ 80 (218)
T ss_pred CcceeChhHHHHHHHHHHHHhhhcCCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChh
Confidence 99999999999999999999999999999999999999999999999998887777999999999999999999999988
Q ss_pred cHHHHHHHHhhCCCc--eEEEEcCCCch-hhcCCCCCccEEEEeCCccCcH-HHHHHhcCCCCCeEEEEeCCCCCCccch
Q 027826 81 SRSEYVHALGEAGFS--PQVITGEADDE-ELMDGLVDIDFLVVDSRRKDFA-RVLRLANLSSRGAVLVCKNAYSRNDSTF 156 (218)
Q Consensus 81 ~~~~~a~~~~~agl~--i~~i~GdA~~~-e~L~~l~~fDfVFIDa~K~~Y~-~~~~~~~L~~~GgvIV~DNvl~~G~~~~ 156 (218)
++.++.+.+..+|+. ++|+.|++ . ++++++..+||++|||..++|. ++|+.+++.|+|+|||++|++.++...+
T Consensus 81 ~~~~~~~~l~~~~~~~~vEfvvg~~--~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV~~Na~~r~~~~~ 158 (218)
T PF07279_consen 81 SLSEYKKALGEAGLSDVVEFVVGEA--PEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVVCYNAFSRSTNGF 158 (218)
T ss_pred hHHHHHHHHhhccccccceEEecCC--HHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEEEeccccCCcCCc
Confidence 888888899999987 89999996 5 5899999999999999999999 9999999988899999999998776677
Q ss_pred hhhhhhccCCCCCeEEEEeecCCcEEEEEEeecCCccCCCCCCCCceEeccccccccccccC
Q 027826 157 RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEHVIRK 218 (218)
Q Consensus 157 ~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (218)
.|...+++. +.++|++||||.||+|++++.+++..++++++||||+|||+||||||||||
T Consensus 159 ~w~~~~~~~--r~Vrsv~LPIG~GleVt~ig~~~~~~~~~~~~srWi~~vD~~sGEeHv~R~ 218 (218)
T PF07279_consen 159 SWRSVLRGR--RVVRSVFLPIGKGLEVTRIGASGGSNSSRRKKSRWIKHVDQCSGEEHVFRR 218 (218)
T ss_pred cHHHhcCCC--CceeEEEeccCCCeEEEEEeecCCCCCCCCCCccceEeeccCCCceeeecC
Confidence 888777553 789999999999999999999998877888999999999999999999997
|
The function of this family is unknown. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=296.28 Aligned_cols=159 Identities=22% Similarity=0.393 Sum_probs=137.2
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eE
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~ 97 (218)
..+.++|++|+||.+|+++.+||+||||||++|| ||+|||.++++ +|+ |+|+|.++++.+.|+ ++.++|+. |+
T Consensus 25 ~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~Gy--Sal~la~~l~~-~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~ 100 (205)
T PF01596_consen 25 PQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGY--SALWLAEALPE-DGK-ITTIEIDPERAEIARENFRKAGLDDRIE 100 (205)
T ss_dssp GGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSH--HHHHHHHTSTT-TSE-EEEEESSHHHHHHHHHHHHHTTGGGGEE
T ss_pred CCCccCHHHHHHHHHHHHhcCCceEEEecccccc--HHHHHHHhhcc-cce-EEEecCcHHHHHHHHHHHHhcCCCCcEE
Confidence 3568899999999999999999999999999999 99999999876 789 777889999888776 45799997 99
Q ss_pred EEEcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c--------chh-h
Q 027826 98 VITGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S--------TFR-W 158 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~--------~~~-~ 158 (218)
+++||| .++|+++ .+||||||||+|.+|++||+.+ +++++||+||+||++|+|. + .++ |
T Consensus 101 ~~~gda--~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f 178 (205)
T PF01596_consen 101 VIEGDA--LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREF 178 (205)
T ss_dssp EEES-H--HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHH
T ss_pred EEEecc--HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHH
Confidence 999999 9999876 2699999999999999999999 6666699999999999995 1 122 6
Q ss_pred hhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 159 KNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 159 ~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
++.+.++ |+|++++||+||||+|+||+
T Consensus 179 ~~~i~~d--~~~~~~llpigdGl~l~~K~ 205 (205)
T PF01596_consen 179 NEYIAND--PRFETVLLPIGDGLTLARKR 205 (205)
T ss_dssp HHHHHH---TTEEEEEECSTTEEEEEEE-
T ss_pred HHHHHhC--CCeeEEEEEeCCeeEEEEEC
Confidence 7766665 89999999999999999984
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=287.55 Aligned_cols=171 Identities=21% Similarity=0.338 Sum_probs=145.2
Q ss_pred hhHHHHHHhhhcc-C----------------CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcE
Q 027826 9 TASKAYIDTVKSC-E----------------LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGR 71 (218)
Q Consensus 9 ~a~~ayl~~l~~~-~----------------~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~ 71 (218)
+.+.+|+.+.... . .++.|++|+||++|+++.+||+||||||+.|| |++|||.++++ +|+
T Consensus 10 ~~l~~y~~~~~~~~~~~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~Gy--Sal~mA~~l~~-~g~ 86 (219)
T COG4122 10 EDLYDYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGY--SALWMALALPD-DGR 86 (219)
T ss_pred HHHHHHHHhhcccCCchHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCH--HHHHHHhhCCC-CCe
Confidence 3566777766654 1 15669999999999999999999999999999 99999999987 788
Q ss_pred EEEEEcCCccHHHHHH-HHhhCCCc--eEEEE-cCCCchhhcCC-C-CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 72 HVCLVPDERSRSEYVH-ALGEAGFS--PQVIT-GEADDEELMDG-L-VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 72 vitt~e~~~~~~~~a~-~~~~agl~--i~~i~-GdA~~~e~L~~-l-~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
++|+|.++++...|+ +|+++|+. |+++. ||| +++|.. + ++||||||||+|.+|++||+.+ +|+++||+||
T Consensus 87 -l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda--l~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 87 -LTTIERDEERAEIARENLAEAGVDDRIELLLGGDA--LDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred -EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH--HHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 677789999887765 66899999 88999 699 999997 3 4999999999999999999999 7777799999
Q ss_pred EeCCCCCCc---cc----------hh-hhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 145 CKNAYSRND---ST----------FR-WKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 145 ~DNvl~~G~---~~----------~~-~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
+|||+|+|. +. .+ |+..+.++ |+++++++|+|||++|++|.
T Consensus 164 ~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 164 ADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLED--PRYDTVLLPLGDGLLLSRKR 218 (219)
T ss_pred EeecccCCccCCccchhHHHHHHHHHHHHHHHhhC--cCceeEEEecCCceEEEeec
Confidence 999999995 21 12 55555554 89999999999999999985
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=289.82 Aligned_cols=156 Identities=17% Similarity=0.270 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~ 100 (218)
.++|++|+||.+|++..+|++||||||++|| ||+|||.++++ +|+ ++|+|.++++...|+ +|.++|+. |++++
T Consensus 62 ~~~~~~g~lL~~l~~~~~ak~iLEiGT~~Gy--Sal~la~al~~-~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~ 137 (247)
T PLN02589 62 TTSADEGQFLNMLLKLINAKNTMEIGVYTGY--SLLATALALPE-DGK-ILAMDINRENYELGLPVIQKAGVAHKIDFRE 137 (247)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEEEeChhhH--HHHHHHhhCCC-CCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 5689999999999999999999999999999 99999999875 789 667788888877775 56799998 99999
Q ss_pred cCCCchhhcCCC-------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c------c--------
Q 027826 101 GEADDEELMDGL-------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S------T-------- 155 (218)
Q Consensus 101 GdA~~~e~L~~l-------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~------~-------- 155 (218)
|+| +++|++| ++||||||||+|.+|++||+++ +++++||+||+||++|+|. + .
T Consensus 138 G~a--~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ 215 (247)
T PLN02589 138 GPA--LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDF 215 (247)
T ss_pred ccH--HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHH
Confidence 999 9999986 3899999999999999999998 7777799999999999995 1 0
Q ss_pred h-hhhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 156 F-RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 156 ~-~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
+ .|++.+.++ ++|+++++|+|||++|++|.
T Consensus 216 ir~fn~~v~~d--~~~~~~llPigDGl~l~~k~ 246 (247)
T PLN02589 216 VLELNKALAAD--PRIEICMLPVGDGITLCRRI 246 (247)
T ss_pred HHHHHHHHHhC--CCEEEEEEEeCCccEEEEEe
Confidence 1 155556654 89999999999999999986
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=286.27 Aligned_cols=157 Identities=21% Similarity=0.302 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i 99 (218)
++++|++|+||++|+++.+||+||||||++|| |+++||.++++ +|+ |+++|.++++.+.|+ +++++|++ |+++
T Consensus 100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGy--Sal~lA~al~~-~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGY--SSLAVALVLPE-SGC-LVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred cccCHHHHHHHHHHHHhcCCCeEEEecCCCCH--HHHHHHHhCCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 37899999999999999999999999999999 99999999875 788 777789898877765 56799998 9999
Q ss_pred EcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c--------chh-hhh
Q 027826 100 TGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S--------TFR-WKN 160 (218)
Q Consensus 100 ~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~--------~~~-~~~ 160 (218)
.||| .++|+++ ++||||||||+|.+|++||+++ +++++||+||+||++|+|. + .++ |++
T Consensus 176 ~GdA--~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~ 253 (278)
T PLN02476 176 HGLA--AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNK 253 (278)
T ss_pred EcCH--HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHH
Confidence 9999 9999876 3899999999999999999998 7777799999999999996 1 122 777
Q ss_pred hhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 161 VLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 161 ~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
.+.++ ++|+++++|+|||++|++|+
T Consensus 254 ~v~~d--~~~~~~llPigDGl~i~~K~ 278 (278)
T PLN02476 254 KLMDD--KRVSISMVPIGDGMTICRKR 278 (278)
T ss_pred HHhhC--CCEEEEEEEeCCeeEEEEEC
Confidence 66665 89999999999999999974
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=258.67 Aligned_cols=157 Identities=22% Similarity=0.277 Sum_probs=136.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEE
Q 027826 22 ELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQV 98 (218)
Q Consensus 22 ~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~ 98 (218)
.+.++|++|+|+.+|++..+||++||||+|+|| |++++|.++++ +|+ |+++|.|++.++... ..+.||+. |++
T Consensus 54 ~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGy--SaL~~Alalp~-dGr-v~a~eid~~~~~~~~~~~k~agv~~KI~~ 129 (237)
T KOG1663|consen 54 EMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGY--SALAVALALPE-DGR-VVAIEIDADAYEIGLELVKLAGVDHKITF 129 (237)
T ss_pred ceecChHHHHHHHHHHHHhCCceEEEEecccCH--HHHHHHHhcCC-Cce-EEEEecChHHHHHhHHHHHhccccceeee
Confidence 357999999999999999999999999999999 99999999987 899 666788887766664 45799998 999
Q ss_pred EEcCCCchhhcCCC----C--CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---cc---------h---
Q 027826 99 ITGEADDEELMDGL----V--DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---ST---------F--- 156 (218)
Q Consensus 99 i~GdA~~~e~L~~l----~--~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~~---------~--- 156 (218)
++|+| ++.|++| + +|||+|+||||.+|..|++.+ +|+++||||++||++|+|. ++ +
T Consensus 130 i~g~a--~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~ 207 (237)
T KOG1663|consen 130 IEGPA--LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREA 207 (237)
T ss_pred eecch--hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhh
Confidence 99999 9988875 2 899999999999999999998 8888899999999999993 11 1
Q ss_pred -hhhhhhccCCCCCeEEEEeecCCcEEEEEE
Q 027826 157 -RWKNVLDGRSRRLVRSVYLPVGKGLDIAHV 186 (218)
Q Consensus 157 -~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~ 186 (218)
.+|..+..+ +++..+++|+|||+.++++
T Consensus 208 ~~~n~~l~~D--~rV~~s~~~igdG~~i~~k 236 (237)
T KOG1663|consen 208 LNLNKKLARD--PRVYISLLPIGDGITICRK 236 (237)
T ss_pred hhhhhHhccC--cceeeEeeeccCceeeecc
Confidence 144556655 8999999999999999886
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=257.59 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i 99 (218)
+.++|++|+||++|+++.+|++||||||++|| |+++||.++++ +|+ ++++|.++++.+.++ ++.++|+. |+++
T Consensus 50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~--s~l~la~~~~~-~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~ 125 (234)
T PLN02781 50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGY--SLLTTALALPE-DGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFI 125 (234)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEEecCcccH--HHHHHHHhCCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 36799999999999999999999999999999 99999999865 678 777889998877665 55799997 9999
Q ss_pred EcCCCchhhcCCC------CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc---c-------------ch
Q 027826 100 TGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S-------------TF 156 (218)
Q Consensus 100 ~GdA~~~e~L~~l------~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~---~-------------~~ 156 (218)
.||| .+.|+++ ++|||||+|++|.+|++||+.+ +++++||+|++||++|+|. + .+
T Consensus 126 ~gda--~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~i 203 (234)
T PLN02781 126 QSDA--LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKAL 203 (234)
T ss_pred EccH--HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHH
Confidence 9999 9998875 3899999999999999999998 7777799999999999994 1 01
Q ss_pred -hhhhhhccCCCCCeEEEEeecCCcEEEEEEe
Q 027826 157 -RWKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 157 -~~~~~~~~~~~~~~~s~~lPiGDGl~v~r~~ 187 (218)
.|++.+.++ ++++++++|+|||+++++|.
T Consensus 204 r~~~~~i~~~--~~~~~~~lp~gdG~~i~~k~ 233 (234)
T PLN02781 204 LEFNKLLASD--PRVEISQISIGDGVTLCRRL 233 (234)
T ss_pred HHHHHHHhhC--CCeEEEEEEeCCccEEEEEe
Confidence 156656654 89999999999999999974
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=129.74 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcC-cchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCc--eEEE
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSH-GGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFS--PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~-~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~--i~~i 99 (218)
..+.++++|+.+... +|++|+||||| .|| |++.|+.++.+ +++ ++.+|.++++.+.|+.+. +.|+. ++|+
T Consensus 108 L~~lE~~~L~~~~~~-~p~~VldIGcGpgpl--taiilaa~~~p-~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~ 182 (296)
T PLN03075 108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPLPL--TSIVLAKHHLP-TTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFH 182 (296)
T ss_pred HHHHHHHHHHHhhcC-CCCEEEEECCCCcHH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEE
Confidence 578899999999988 99999999999 778 99988877654 678 777789999888887654 48887 9999
Q ss_pred EcCCCchhhcCCCCCccEEEEeC----CccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccch
Q 027826 100 TGEADDEELMDGLVDIDFLVVDS----RRKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTF 156 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~ 156 (218)
.||+ .+..+.+..||+||++| +|+.+.++|+.+ +.+++||+++.=. .+|...+
T Consensus 183 ~~Da--~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~ 240 (296)
T PLN03075 183 TADV--MDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAF 240 (296)
T ss_pred ECch--hhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec--ccchHhh
Confidence 9999 88765677999999998 799999999999 6566699999887 3665333
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-14 Score=110.37 Aligned_cols=98 Identities=24% Similarity=0.358 Sum_probs=41.8
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCC-cEEEEEEcCCccHHHHHHHHhhCCCc--eEEEEcCCCchhhcCCCC--CccEEEE
Q 027826 46 VETWSHGGATATSVGLAVASRHTG-GRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLV--DIDFLVV 120 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~-G~vitt~e~~~~~~~~a~~~~~agl~--i~~i~GdA~~~e~L~~l~--~fDfVFI 120 (218)
|||||+.|+ |+++|++++++.+ ++ +++++..+.....++.+++.++. ++++.|+. .+.++++. +|||+||
T Consensus 1 lEiG~~~G~--st~~l~~~~~~~~~~~-~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGY--STLWLASALRDNGRGK-LYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDS--PDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp -----------------------------EEEESS------------GGG-BTEEEEES-T--HHHHHHHHH--EEEEEE
T ss_pred Ccccccccc--ccccccccccccccCC-EEEEECCCcccccchhhhhcCCCCeEEEEEcCc--HHHHHHcCCCCEEEEEE
Confidence 799999999 9999999988744 36 55556666422233444456665 99999999 99998875 9999999
Q ss_pred eCCc--cCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 121 DSRR--KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 121 Da~K--~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|++. +.....|+.+ +.+++||+||+||+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9972 4444555555 44455999999985
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=107.19 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|....++..++......+|||||||+|| .+..||..+.. +|+ |+++|.++++.+.++ ++.+.|+. ++++.|
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~--~t~~la~~~~~-~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGY--HAAVVAEIVGK-SGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 5678888888888888888999999999999 77778877643 578 777889998887765 45688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEe
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
|+ .+..+...+||.||+++...++++- +...+++||.+++.
T Consensus 135 d~--~~~~~~~~~fD~I~~~~~~~~~~~~--l~~~LkpgG~lvi~ 175 (212)
T PRK13942 135 DG--TLGYEENAPYDRIYVTAAGPDIPKP--LIEQLKDGGIMVIP 175 (212)
T ss_pred Cc--ccCCCcCCCcCEEEECCCcccchHH--HHHhhCCCcEEEEE
Confidence 99 7766555699999999998877652 23344559988774
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=107.50 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC-c-eEEEEcCCCchhh
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF-S-PQVITGEADDEEL 108 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl-~-i~~i~GdA~~~e~ 108 (218)
++..|....++++|||||+|+|+ .+..++...+ +.+ ++.+|.+++..+.++.+. ..+. . +++++||+ .+.
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~--l~~~l~~~~p--~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da--~~~ 129 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGS--LAKFIYTYLP--DTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADG--AEY 129 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhH--HHHHHHHhCC--CCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH--HHH
Confidence 44444545689999999999999 7777777654 567 788899999888877553 3333 3 99999999 999
Q ss_pred cCCCC-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEe
Q 027826 109 MDGLV-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+++.+ +||+||+|+.... ..++|+.+ ..+++||++++.
T Consensus 130 l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 130 IAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 98775 8999999996543 26888888 555569999884
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=102.81 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|...+.+..++......+|||||||+|| .++.||..... +|+ |+.+|.++++.+.++ ++.+.|+. ++++.|
T Consensus 60 ~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~a~~la~~~~~-~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~ 135 (215)
T TIGR00080 60 ISAPHMVAMMTELLELKPGMKVLEIGTGSGY--QAAVLAEIVGR-DGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVG 135 (215)
T ss_pred echHHHHHHHHHHhCCCCcCEEEEECCCccH--HHHHHHHHhCC-CCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC
Confidence 3456665666666677788899999999999 77778887553 578 667788888877776 45688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEe
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
|+ .+.++...+||+|++|+....+++.+ ...+++||.+++.
T Consensus 136 d~--~~~~~~~~~fD~Ii~~~~~~~~~~~~--~~~L~~gG~lv~~ 176 (215)
T TIGR00080 136 DG--TQGWEPLAPYDRIYVTAAGPKIPEAL--IDQLKEGGILVMP 176 (215)
T ss_pred Cc--ccCCcccCCCCEEEEcCCcccccHHH--HHhcCcCcEEEEE
Confidence 99 87766666999999999877776542 3444559998875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=99.89 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~Gd 102 (218)
.|..-..+..++......+|||||||+|| .+..||..+.. +|+ |+.+|.++++.+.++ ++.+.|+. ++++.||
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~--~~~~la~~~~~-~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d 132 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGY--QAAVCAEAIER-RGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD 132 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccH--HHHHHHHhcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence 34333333333333444699999999999 77778887653 577 777889888877665 55678875 8999999
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNA 148 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNv 148 (218)
+ .+.++...+||.||+++....+++ ++...+++||.+++...
T Consensus 133 ~--~~~~~~~~~fD~Ii~~~~~~~~~~--~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 133 G--KRGLEKHAPFDAIIVTAAASTIPS--ALVRQLKDGGVLVIPVE 174 (205)
T ss_pred c--ccCCccCCCccEEEEccCcchhhH--HHHHhcCcCcEEEEEEc
Confidence 9 877766569999999998776664 33344555999988754
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.3e-11 Score=99.15 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|.....+..++...+..+|||||||+|| .+..|+... ++ ++++|.++++...++ ++.+.|+. ++++.|
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~--~t~~la~~~----~~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~ 133 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGY--QAAVLAHLV----RR-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHG 133 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccH--HHHHHHHHh----CE-EEEEeCCHHHHHHHHHHHHHCCCCceEEEEC
Confidence 4578888888888888888999999999999 666666652 46 667788888776665 55688887 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCCCCCCccch-hhhh---hhccCCCCCeEEEEeec
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAYSRNDSTF-RWKN---VLDGRSRRLVRSVYLPV 177 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNvl~~G~~~~-~~~~---~~~~~~~~~~~s~~lPi 177 (218)
|+ .+.++...+||+|++++....+++.+ ..++++||.+++.=. ..+.... .+.+ ..... .-+.+.+.|+
T Consensus 134 d~--~~~~~~~~~fD~I~~~~~~~~~~~~l--~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~ 206 (212)
T PRK00312 134 DG--WKGWPAYAPFDRILVTAAAPEIPRAL--LEQLKEGGILVAPVG-GEEQQLLTRVRKRGGRFERE--VLEEVRFVPL 206 (212)
T ss_pred Cc--ccCCCcCCCcCEEEEccCchhhhHHH--HHhcCCCcEEEEEEc-CCCceEEEEEEEcCCeEEEE--EEccEEEEec
Confidence 99 77776666999999999887776532 344555998887522 1111111 1211 01111 3467778899
Q ss_pred CCcEE
Q 027826 178 GKGLD 182 (218)
Q Consensus 178 GDGl~ 182 (218)
.+|++
T Consensus 207 ~~~~~ 211 (212)
T PRK00312 207 VKGEL 211 (212)
T ss_pred CCCCC
Confidence 88864
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=102.29 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|..-..+..++......+||||||++|| .|--||+-. |+ |+++|..++..+.|+ ++...|+. |.+++|
T Consensus 55 is~P~~vA~m~~~L~~~~g~~VLEIGtGsGY--~aAvla~l~----~~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 55 ISAPHMVARMLQLLELKPGDRVLEIGTGSGY--QAAVLARLV----GR-VVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred ecCcHHHHHHHHHhCCCCCCeEEEECCCchH--HHHHHHHHh----Ce-EEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 6778787888888889999999999999999 665677753 46 888899999887775 56799997 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
|. ..-.+...+||-|++-|.-..-|+-| + +|.+ ||.+|+-=
T Consensus 128 DG--~~G~~~~aPyD~I~Vtaaa~~vP~~L--l~QL~~-gGrlv~Pv 169 (209)
T COG2518 128 DG--SKGWPEEAPYDRIIVTAAAPEVPEAL--LDQLKP-GGRLVIPV 169 (209)
T ss_pred Cc--ccCCCCCCCcCEEEEeeccCCCCHHH--HHhccc-CCEEEEEE
Confidence 99 88888878999999999977776532 3 4444 88887653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=95.63 Aligned_cols=117 Identities=14% Similarity=0.137 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~Gd 102 (218)
..++..+++-..+...+..+|||||||+|+ .++.++...+ +++ ++.+|.++++.+.++. ..+.++. ++++.||
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~--~~~~la~~~~--~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGS--VSIEAALQFP--SLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 344455555555566688999999999999 7777777643 467 6677888887766654 4567776 9999999
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+ ...++ ++||+||+++....+.++++.+ +++++||.+++..+..
T Consensus 90 ~--~~~~~--~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 90 A--PIELP--GKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred c--hhhcC--cCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEecH
Confidence 9 65443 3899999999888888999987 6666699999976543
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=96.91 Aligned_cols=101 Identities=18% Similarity=0.335 Sum_probs=78.4
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCC
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVD 114 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~ 114 (218)
+...+.++|||||||+|+ .++.+|...+ +++ ++.+|.++++.+.++.+ ++.|+. ++++.||+ .+. +.-++
T Consensus 38 ~~~~~~~~vLDiGcGtG~--~s~~la~~~~--~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~--~~~-~~~~~ 109 (181)
T TIGR00138 38 LEYLDGKKVIDIGSGAGF--PGIPLAIARP--ELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRA--EDF-QHEEQ 109 (181)
T ss_pred HHhcCCCeEEEecCCCCc--cHHHHHHHCC--CCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch--hhc-cccCC
Confidence 445678999999999999 7777775432 577 67778888877766544 577887 99999999 774 32348
Q ss_pred ccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 115 IDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 115 fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
||+|+.++ ..++.++++.+ +++++||.+++-
T Consensus 110 fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 99999999 67888999987 666669998854
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-10 Score=94.67 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEE
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVIT 100 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~ 100 (218)
.+..++..+++...+......+|||+|||+|+ .++.+|...+ +++ ++.+|.++++.+.++. ..+.++. ++++.
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~--~~~~la~~~~--~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~ 96 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGT--IPVEAGLLCP--KGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIE 96 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35567777777666676667899999999999 7777776533 467 6677888888777654 4577877 99999
Q ss_pred cCCCchhhcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 101 GEADDEELMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
||+ .+.++.+. .+|.+|+|+. ....++++.+ +++++||.+++....
T Consensus 97 ~d~--~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 97 GSA--PECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred Cch--HHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 999 88777664 6899999975 4567888887 556669998888654
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-10 Score=85.01 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=78.1
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-CCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-VDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~~f 115 (218)
....++|||+|||+|+ .++-++...+ +++ ++.+|.++.+.+.++.+ ...++. ++++.+|+ .+.++.. ++|
T Consensus 17 ~~~~~~vldlG~G~G~--~~~~l~~~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 89 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGS--ITIEAARLVP--NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDA--PEALEDSLPEP 89 (124)
T ss_pred CCCCCEEEEeCCCCCH--HHHHHHHHCC--Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc--cccChhhcCCC
Confidence 3445799999999999 7777777654 367 66678888777766544 567776 99999999 7655544 489
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|+|+++.....+.++++.+ +++++||.+++.
T Consensus 90 D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 9999999888899999998 666669998864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-10 Score=94.03 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=76.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
..++|||||||+|+ .++.+|.+.+ +++ |+.+|.++++.+.++.. .+.++. ++++.+|+ .+.-. -++||+|
T Consensus 45 ~g~~VLDiGcGtG~--~al~la~~~~--~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~--~~~~~-~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGF--PGIPLAIARP--ELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA--EEFGQ-EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCH--HHHHHHHHCC--CCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH--hhCCC-CCCccEE
Confidence 36899999999999 7877777543 567 66678888887776654 578887 99999999 77433 3489999
Q ss_pred EEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 119 VVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.++. .++..+++.+ +++++||.+++-
T Consensus 117 ~~~~~-~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 117 TSRAV-ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred EEccc-cCHHHHHHHHHHhcCCCeEEEEE
Confidence 99984 6788999988 666668888765
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=93.91 Aligned_cols=121 Identities=12% Similarity=0.197 Sum_probs=89.6
Q ss_pred CCCHHHHHHHH-HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCC-c-eEEE
Q 027826 24 SHESGVAELVS-AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGF-S-PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~-~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl-~-i~~i 99 (218)
.++++.-..+. .........+|||+|||+|+ -++.+|..+.+ +++ ++.+|.++++.+.++.+ ...|+ . ++++
T Consensus 22 ~~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~--~s~~~a~~~~~-~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198)
T PRK00377 22 PMTKEEIRALALSKLRLRKGDMILDIGCGTGS--VTVEASLLVGE-TGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198)
T ss_pred CCCHHHHHHHHHHHcCCCCcCEEEEeCCcCCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 45544444333 22234455799999999999 66667766543 567 66778888887776644 57775 3 8999
Q ss_pred EcCCCchhhcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 100 TGEADDEELMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 100 ~GdA~~~e~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.||+ .+.++.+. .||.||+......+.++++.+ +++++||.++++....
T Consensus 98 ~~d~--~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 148 (198)
T PRK00377 98 KGEA--PEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAILL 148 (198)
T ss_pred Eech--hhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeecH
Confidence 9999 88888774 899999988778899999998 6666699999987754
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=85.33 Aligned_cols=98 Identities=24% Similarity=0.209 Sum_probs=74.0
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCCCchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
-.+||||||++|. .++.+++..+ +.+ ++.+|.++++.+.++... +.+.. |+++++|+ .......++||+|
T Consensus 2 ~~~vLDlGcG~G~--~~~~l~~~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~v 74 (112)
T PF12847_consen 2 GGRVLDLGCGTGR--LSIALARLFP--GAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA--EFDPDFLEPFDLV 74 (112)
T ss_dssp TCEEEEETTTTSH--HHHHHHHHHT--TSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC--HGGTTTSSCEEEE
T ss_pred CCEEEEEcCcCCH--HHHHHHhcCC--CCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc--ccCcccCCCCCEE
Confidence 4689999999999 8887887433 678 777789999888776553 55555 99999999 6666666699999
Q ss_pred EEeC-CccCcHH------HHHHh-cCCCCCeEEEEe
Q 027826 119 VVDS-RRKDFAR------VLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa-~K~~Y~~------~~~~~-~L~~~GgvIV~D 146 (218)
+++. .-..|.. +++.+ ++++|||+++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 9999 4444544 47777 555559999875
|
... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=99.37 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
+..|..-..+..++....-.+|||||||+|| .|--||....+ .|+ |+++|.+++..+.|+ ++.+.|+. |++++|
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY--~aAlla~lvg~-~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g 130 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGY--QAALLAHLVGP-VGR-VVSVERDPELAERARRNLARLGIDNVEVVVG 130 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSH--HHHHHHHHHST-TEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcH--HHHHHHHhcCc-cce-EEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence 4557655555555667788899999999999 66556766554 577 667899998877665 56788997 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEEeCCC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCKNAY 149 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~DNvl 149 (218)
|+ .+-++...+||.|++.+.-..-+.- ++..+++||.+|+---.
T Consensus 131 dg--~~g~~~~apfD~I~v~~a~~~ip~~--l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 131 DG--SEGWPEEAPFDRIIVTAAVPEIPEA--LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp -G--GGTTGGG-SEEEEEESSBBSS--HH--HHHTEEEEEEEEEEESS
T ss_pred ch--hhccccCCCcCEEEEeeccchHHHH--HHHhcCCCcEEEEEEcc
Confidence 99 8877766699999999987665532 34223459999986544
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.4e-10 Score=97.04 Aligned_cols=134 Identities=20% Similarity=0.162 Sum_probs=106.6
Q ss_pred hhhHHHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~ 87 (218)
++....|+..++-...+|-|--+.++-+.+.+..-.+|||.|||+|. -+..||.+..+ .|+ |++.|..++.++.|+
T Consensus 61 ~p~~~d~~~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~--lt~~La~~vg~-~G~-v~tyE~r~d~~k~A~ 136 (256)
T COG2519 61 KPTPEDYLLSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGA--LTAYLARAVGP-EGH-VTTYEIREDFAKTAR 136 (256)
T ss_pred CCCHHHHHHhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchH--HHHHHHHhhCC-Cce-EEEEEecHHHHHHHH
Confidence 45566778776666668888888888899999999999999999998 56567877765 589 777888888888775
Q ss_pred -HHhhCCCc--eEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 88 -ALGEAGFS--PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 88 -~~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
++.++|+. |++..||. .+.+... .||.||+|-- +=-++++.+ .++++||.+++-+-..
T Consensus 137 ~Nl~~~~l~d~v~~~~~Dv--~~~~~~~-~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 137 ENLSEFGLGDRVTLKLGDV--REGIDEE-DVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred HHHHHhccccceEEEeccc--ccccccc-ccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 55688998 89999999 8866655 9999999985 556788888 6666699998876543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=96.26 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=94.9
Q ss_pred HHHHHHhhhccCC-----CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH
Q 027826 11 SKAYIDTVKSCEL-----SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY 85 (218)
Q Consensus 11 ~~ayl~~l~~~~~-----~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~ 85 (218)
+.-|++.++.... +++|.++.+++++.. ...+|||||||+|+ .++.||...+ +++ ++.+|.++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~--~~~~la~~~p--~~~-v~gVD~s~~~i~~ 79 (202)
T PRK00121 7 RRGRLTKGQQRAIEELWPRLSPAPLDWAELFGN--DAPIHLEIGFGKGE--FLVEMAKANP--DIN-FIGIEVHEPGVGK 79 (202)
T ss_pred hccccccchhhhhcccchhhcCCCCCHHHHcCC--CCCeEEEEccCCCH--HHHHHHHHCC--Ccc-EEEEEechHHHHH
Confidence 4567777776554 688999999999999 78899999999999 7777877643 456 6667888888776
Q ss_pred HHH-HhhCCCc-eEEEEcCCCchhhcCC-CC--CccEEEEeC---Cc--------cCcHHHHHHh-cCCCCCeEEEE
Q 027826 86 VHA-LGEAGFS-PQVITGEADDEELMDG-LV--DIDFLVVDS---RR--------KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 86 a~~-~~~agl~-i~~i~GdA~~~e~L~~-l~--~fDfVFIDa---~K--------~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++. ....++. ++++.+|+ .+.++. +. +||.|++.. +. ..+..+++.+ +++++||++++
T Consensus 80 a~~~~~~~~~~~v~~~~~d~--~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 80 ALKKIEEEGLTNLRLLCGDA--VEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred HHHHHHHcCCCCEEEEecCH--HHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 654 4567776 99999999 877763 42 799999842 21 1368889888 66666888765
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-09 Score=88.97 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCch
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDE 106 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~ 106 (218)
.-.+.-.-.+..+-.++++|||++|- -+|=+|.+. +.|+ ++.+|.++++.+.-+ +..+.|++ ++++.|+| -
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGs--i~iE~a~~~--p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p 94 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGS--ITIEWALAG--PSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDA--P 94 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccH--HHHHHHHhC--CCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--h
Confidence 33333344556677899999999998 566566433 3689 667788888877655 44689988 99999999 9
Q ss_pred hhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 107 ELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 107 e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.|++++.||-|||=+. .++...++.+ ..+++||-||++=+....
T Consensus 95 ~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~naitlE~ 140 (187)
T COG2242 95 EALPDLPSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAITLET 140 (187)
T ss_pred HhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeecHHH
Confidence 99999989999999999 9999999999 444559999998776543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-10 Score=101.84 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=76.4
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH------hhCCCc---eEEEEcCCCch
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL------GEAGFS---PQVITGEADDE 106 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~------~~agl~---i~~i~GdA~~~ 106 (218)
++...+|++||+||+|+|+ ++-.+.+. .+..+ |+.+|.++++.+.|+.+ .+..+. ++++.+|| .
T Consensus 145 m~~h~~PkrVLIIGgGdG~--tlrelLk~--~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da--~ 217 (374)
T PRK01581 145 MSKVIDPKRVLILGGGDGL--ALREVLKY--ETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDA--K 217 (374)
T ss_pred HHhCCCCCEEEEECCCHHH--HHHHHHhc--CCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcH--H
Confidence 4557899999999999998 55333331 22346 88889999988887752 122332 99999999 9
Q ss_pred hhcCCCC-CccEEEEeCCcc-------Cc-HHHHHHh-cCCCCCeEEEEeC
Q 027826 107 ELMDGLV-DIDFLVVDSRRK-------DF-ARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 107 e~L~~l~-~fDfVFIDa~K~-------~Y-~~~~~~~-~L~~~GgvIV~DN 147 (218)
+.|+..+ .||+||+|.... .| .++|+.+ +.+++||++|+-.
T Consensus 218 ~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 218 EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9998775 899999996432 44 6688888 5555599987753
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-09 Score=94.97 Aligned_cols=112 Identities=11% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHH-----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--CCCc---
Q 027826 27 SGVAELVSAMAA-----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--AGFS--- 95 (218)
Q Consensus 27 p~~g~fL~~L~~-----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--agl~--- 95 (218)
++...+-.+|+. ..+|++||.||+|.|. ++-.+++. ++..+ |+.+|.+++..+.++.+ .. .+++
T Consensus 72 ~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~--~~rellk~--~~v~~-V~~VEiD~~Vi~~ar~~f~~~~~~~~dpR 146 (308)
T PLN02366 72 RDECAYQEMITHLPLCSIPNPKKVLVVGGGDGG--VLREIARH--SSVEQ-IDICEIDKMVIDVSKKFFPDLAVGFDDPR 146 (308)
T ss_pred ccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccH--HHHHHHhC--CCCCe-EEEEECCHHHHHHHHHhhhhhccccCCCc
Confidence 444444445443 3689999999999998 66666653 22345 77889999887777654 33 2343
Q ss_pred eEEEEcCCCchhhcCCC-C-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEE
Q 027826 96 PQVITGEADDEELMDGL-V-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l-~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++++.||| .+.+.+. + +||+||+|+.... +.++|+.+ +.+++||+++.
T Consensus 147 v~vi~~Da--~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 147 VNLHIGDG--VEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred eEEEEChH--HHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 99999999 9999877 3 8999999987642 45678888 55556999865
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-08 Score=93.89 Aligned_cols=121 Identities=12% Similarity=0.202 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+..+..+++..++...+.++|||+||++|. .++.+|..+.+ +|+ |+.+|.++++...++ ++.+.|+. |+++++
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~~~-~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~ 308 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGG--KTTHIAELLKN-TGK-VVALDIHEHKLKLIEENAKRLGLTNIETKAL 308 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCH--HHHHHHHHhCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4556677888877777777899999999999 78788887643 577 667788888776655 55688988 999999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
|+ .+.++.+. +||+||+|+.-.. ..++++.+ +++++||.+|.-..-+
T Consensus 309 D~--~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 309 DA--RKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred Cc--ccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 99 77665554 8999999985221 12355555 6666799998766543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=92.82 Aligned_cols=112 Identities=12% Similarity=0.097 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA 103 (218)
.|..-..+...+...+..+|||||||+|| .++.+|..... .|+ |+.+|.++++.+.++. +.+.|+. ++++.||+
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~--~a~~LA~~~~~-~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVVGE-KGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccH--HHHHHHHhcCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 44433333333334556799999999999 77778876543 467 6667888888776654 5678887 99999999
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHhcCCCCCeEEEE
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVC 145 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~~L~~~GgvIV~ 145 (218)
.+.++...+||.|++++...+-++. +.+.+++||.+++
T Consensus 141 --~~~~~~~~~fD~Ii~~~g~~~ip~~--~~~~LkpgG~Lvv 178 (322)
T PRK13943 141 --YYGVPEFAPYDVIFVTVGVDEVPET--WFTQLKEGGRVIV 178 (322)
T ss_pred --hhcccccCCccEEEECCchHHhHHH--HHHhcCCCCEEEE
Confidence 8877776789999999876554432 2334444777665
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-09 Score=92.17 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=73.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--CCC----ceEEEEcCCCchhhcCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--AGF----SPQVITGEADDEELMDG 111 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--agl----~i~~i~GdA~~~e~L~~ 111 (218)
..+|++||+||+|.|+ ++..+++. ....+ |+.+|.+++..+.++.+ .. .+. .++++.||| .+.++.
T Consensus 74 ~~~p~~VL~iG~G~G~--~~~~~l~~--~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da--~~~l~~ 146 (283)
T PRK00811 74 HPNPKRVLIIGGGDGG--TLREVLKH--PSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG--IKFVAE 146 (283)
T ss_pred CCCCCEEEEEecCchH--HHHHHHcC--CCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch--HHHHhh
Confidence 3589999999999998 66555432 22346 88889999988877654 32 233 289999999 999887
Q ss_pred CC-CccEEEEeCCcc------Cc-HHHHHHh-cCCCCCeEEEEe
Q 027826 112 LV-DIDFLVVDSRRK------DF-ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 112 l~-~fDfVFIDa~K~------~Y-~~~~~~~-~L~~~GgvIV~D 146 (218)
.+ +||+|++|+... .| .++|+.+ +.+++||++++-
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 54 899999997422 23 4567777 555669999873
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=98.35 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=75.3
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhcCCC-
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELMDGL- 112 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L~~l- 112 (218)
+..+.++|||+||++|+ .++ +.+... ..+ |+.+|.++...+.++.+ ...|+. ++++.||+ .+.|+++
T Consensus 217 ~~~~g~rVLDlfsgtG~--~~l--~aa~~g-a~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~--~~~l~~~~ 288 (396)
T PRK15128 217 RYVENKRVLNCFSYTGG--FAV--SALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV--FKLLRTYR 288 (396)
T ss_pred HhcCCCeEEEeccCCCH--HHH--HHHhCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH--HHHHHHHH
Confidence 55678999999999998 444 333322 235 77789999887777654 567773 89999999 9988764
Q ss_pred ---CCccEEEEeCCc------------cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 ---VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 ---~~fDfVFIDa~K------------~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+||+||+|... ..|.++++.+ +++++||++++=+
T Consensus 289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 289999999542 3588888887 6666699887543
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-08 Score=87.32 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=86.8
Q ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHh
Q 027826 12 KAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALG 90 (218)
Q Consensus 12 ~ayl~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~ 90 (218)
+.|...+.-...|+=|--..++-+.+.+..=.+|||.|||+|. -++.||+++.+ .|+ |+|.|..+++++.|+ ++.
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~--lt~~l~r~v~p-~G~-v~t~E~~~~~~~~A~~n~~ 86 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDIRPGSRVLEAGTGSGS--LTHALARAVGP-TGH-VYTYEFREDRAEKARKNFE 86 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT--TT-EEEEE--TTSH--HHHHHHHHHTT-TSE-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCCCCCCEEEEecCCcHH--HHHHHHHHhCC-CeE-EEccccCHHHHHHHHHHHH
Confidence 4566666555557878888888888899999999999999999 88889998876 689 777888888887765 667
Q ss_pred hCCCc--eEEEEcCCCchh-hcC-CCC-CccEEEEeCCc-cCcHHHHHHhcCCCCCeEEEEe
Q 027826 91 EAGFS--PQVITGEADDEE-LMD-GLV-DIDFLVVDSRR-KDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 91 ~agl~--i~~i~GdA~~~e-~L~-~l~-~fDfVFIDa~K-~~Y~~~~~~~~L~~~GgvIV~D 146 (218)
+.|+. |++.++|. .+ -.+ .++ .+|-||+|--. -++.+....+. .++||.|++=
T Consensus 87 ~~gl~~~v~~~~~Dv--~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~f 145 (247)
T PF08704_consen 87 RHGLDDNVTVHHRDV--CEEGFDEELESDFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCF 145 (247)
T ss_dssp HTTCCTTEEEEES-G--GCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEE
T ss_pred HcCCCCCceeEecce--ecccccccccCcccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEE
Confidence 89997 99999998 64 232 343 89999999763 34555544443 3569998764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=81.61 Aligned_cols=103 Identities=19% Similarity=0.268 Sum_probs=76.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC--CCc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL--VDI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l--~~f 115 (218)
.+-.+||++|||+|+ .++.|+....+ +++ ++-++.++++.+.++.. .+.++. ++++++|+ .+ +++. .+|
T Consensus 2 ~~~~~iLDlGcG~G~--~~~~l~~~~~~-~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~--~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGR--LLIQLAKELNP-GAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI--ED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSH--HHHHHHHHSTT-TSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT--TC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcH--HHHHHHHhcCC-CCE-EEEEECcHHHHHHhhcccccccccccceEEeeh--hc-cccccCCCe
Confidence 356899999999999 78888864443 678 77778999998887765 588998 99999999 88 7653 699
Q ss_pred cEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 116 DFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 116 DfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+|+....-. +-...++.+ +++++||++++-...
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999997532 223456665 555557877765554
|
... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=83.75 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e 107 (218)
.++..|......++|||+|||+|+ .++. ++.. ..+ |+.+|.+++....++ ++...|+. ++++.+|+ .+
T Consensus 43 ~l~~~l~~~~~~~~vLDl~~GsG~--l~l~~lsr~----a~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~--~~ 113 (199)
T PRK10909 43 TLFNWLAPVIVDARCLDCFAGSGA--LGLEALSRY----AAG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNA--LS 113 (199)
T ss_pred HHHHHHhhhcCCCEEEEcCCCccH--HHHHHHHcC----CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchH--HH
Confidence 356666665667899999999999 4442 2221 245 777889888776665 44677877 99999999 88
Q ss_pred hcCCCC-CccEEEEeCC--ccCcHHHHHHh---cCCCCCeEEEEe
Q 027826 108 LMDGLV-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l~-~fDfVFIDa~--K~~Y~~~~~~~---~L~~~GgvIV~D 146 (218)
.++... +||+||+|-. +..+.+.++.+ .++.++++|++-
T Consensus 114 ~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 114 FLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred HHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 886544 7999999988 45566677776 234448888765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=100.61 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=82.4
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhc
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L 109 (218)
..+.+..+.++|||+||++|. .++.+|.+ +++.|+.+|.++...+.++.+ ...|+. ++++.+|+ .+.|
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~--~sl~aa~~----Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~--~~~l 602 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGT--ASVHAALG----GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC--LAWL 602 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCH--HHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH--HHHH
Confidence 445666778999999999999 67666653 333377889999887777654 566774 89999999 9988
Q ss_pred CCCC-CccEEEEeCCc--------------cCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 110 DGLV-DIDFLVVDSRR--------------KDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K--------------~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
++++ +||+|++|... ..|.++++.+ +++++||++++.+-..
T Consensus 603 ~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 603 KEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred HHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 7665 89999999642 2477777776 6666699998876543
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=81.40 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCch
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDE 106 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~ 106 (218)
+.+.+|...+...+.++|||+|||+|+ .++.++.. +.+ ++.+|.++++.+.++.+ ...++.++++.+|+ .
T Consensus 6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~--~ 76 (179)
T TIGR00537 6 EDSLLLEANLRELKPDDVLEIGAGTGL--VAIRLKGK----GKC-ILTTDINPFAVKELRENAKLNNVGLDVVMTDL--F 76 (179)
T ss_pred ccHHHHHHHHHhcCCCeEEEeCCChhH--HHHHHHhc----CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEccc--c
Confidence 344677777778888999999999999 56555542 235 66778999887776654 56666789999999 7
Q ss_pred hhcCCCCCccEEEEe
Q 027826 107 ELMDGLVDIDFLVVD 121 (218)
Q Consensus 107 e~L~~l~~fDfVFID 121 (218)
+.++ ++||+|+.+
T Consensus 77 ~~~~--~~fD~Vi~n 89 (179)
T TIGR00537 77 KGVR--GKFDVILFN 89 (179)
T ss_pred cccC--CcccEEEEC
Confidence 6543 389999987
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=91.22 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=72.8
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh---hCCCc---eEEEEcCCCchhhcCC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG---EAGFS---PQVITGEADDEELMDG 111 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~---~agl~---i~~i~GdA~~~e~L~~ 111 (218)
..-+|++||.||+|.|+ ++-.+.+. + ...+ |+.+|.+++..+.++.+. ..++. ++++.+|| .+.|+.
T Consensus 100 ~~~~pk~VLiiGgG~G~--~~re~l~~-~-~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da--~~~L~~ 172 (336)
T PLN02823 100 HHPNPKTVFIMGGGEGS--TAREVLRH-K-TVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA--RAELEK 172 (336)
T ss_pred hCCCCCEEEEECCCchH--HHHHHHhC-C-CCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChh--HHHHhh
Confidence 33479999999999998 55444432 1 1245 788899999888887553 22232 99999999 999987
Q ss_pred CC-CccEEEEeCCcc--------C-cHHHHH-Hh-cCCCCCeEEEE
Q 027826 112 LV-DIDFLVVDSRRK--------D-FARVLR-LA-NLSSRGAVLVC 145 (218)
Q Consensus 112 l~-~fDfVFIDa~K~--------~-Y~~~~~-~~-~L~~~GgvIV~ 145 (218)
.+ +||+||+|+... . ..++|+ .+ +.+++||++++
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 65 899999996432 2 346787 67 55555999887
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.5e-08 Score=83.21 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=72.9
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCCCchhhcCCCCCc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA~~~e~L~~l~~f 115 (218)
.....++|||+|||+|. .+.-|+....+ +++ ++.+|.++++...++. ..+.++. ++++.+|+ .+....-++|
T Consensus 42 ~~~~~~~vLDiGcG~G~--~~~~la~~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~--~~~~~~~~~f 115 (231)
T TIGR02752 42 NVQAGTSALDVCCGTAD--WSIALAEAVGP-EGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA--MELPFDDNSF 115 (231)
T ss_pred CCCCCCEEEEeCCCcCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEech--hcCCCCCCCc
Confidence 44456799999999999 77778877644 567 6667888887776654 4566776 99999999 6632122389
Q ss_pred cEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVVDSR---RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+|++... -.++...++.+ +++++||.+++
T Consensus 116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 99998753 34556666666 66666998765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=88.62 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~Gd 102 (218)
+.....+++..++....-.+|||+||+.|. -++.||..+.. .|+ |+.+|.++++...++ ++.+.|+. |+++.+|
T Consensus 236 ~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~~~-~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D 311 (434)
T PRK14901 236 VQDRSAQLVAPLLDPQPGEVILDACAAPGG--KTTHIAELMGD-QGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAAD 311 (434)
T ss_pred EECHHHHHHHHHhCCCCcCEEEEeCCCCch--hHHHHHHHhCC-Cce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 344556666666666666899999999999 77778887653 578 666788888776655 55689998 9999999
Q ss_pred CCchhhcCC---C-CCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDG---L-VDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~---l-~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+ .+.... . ++||.||+|+.-.. -.+.++.+ +++++||.+|.-......
T Consensus 312 ~--~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 312 S--RNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred h--hhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 9 765432 2 37999999985211 13445555 666679988766544433
Q ss_pred ccch-hhhhhhccCCCCCeEEE-----Eeec---CCcEEEEEEe
Q 027826 153 DSTF-RWKNVLDGRSRRLVRSV-----YLPV---GKGLDIAHVA 187 (218)
Q Consensus 153 ~~~~-~~~~~~~~~~~~~~~s~-----~lPi---GDGl~v~r~~ 187 (218)
.+.. .....+++. |+|+.. ++|- .||.-+++..
T Consensus 390 ~Ene~~v~~~l~~~--~~~~~~~~~~~~~P~~~~~dGfF~a~l~ 431 (434)
T PRK14901 390 AENEAQIEQFLARH--PDWKLEPPKQKIWPHRQDGDGFFMAVLR 431 (434)
T ss_pred hhHHHHHHHHHHhC--CCcEecCCCCccCCCCCCCCcEEEEEEE
Confidence 2111 111122221 444422 4453 4888888765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=83.45 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCC
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEAD 104 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~ 104 (218)
+..++|..+. .++.+|||||||+|+ .++.||.. +.+ |+.+|.++++.+.++.. .+.|+. ++++++|+
T Consensus 33 ~~~~~l~~l~--~~~~~vLDiGcG~G~--~a~~la~~----g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~- 102 (255)
T PRK11036 33 DLDRLLAELP--PRPLRVLDAGGGEGQ--TAIKLAEL----GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA- 102 (255)
T ss_pred HHHHHHHhcC--CCCCEEEEeCCCchH--HHHHHHHc----CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-
Confidence 3444555543 467899999999999 77777753 456 66678888887777654 577875 89999999
Q ss_pred chhhcCCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 105 DEELMDGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 105 ~~e~L~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+..+..+ +||+|+...-- .+-..+++.+ ++++|||.+++
T Consensus 103 -~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 103 -QDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred -HHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 77544344 89999987542 2334667777 67777999865
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1e-07 Score=89.65 Aligned_cols=123 Identities=16% Similarity=0.239 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+..+.++++..++......+|||+||++|. -|+.+|..+.. +|+ |+.+|.++++...++ ++.+.|+. ++++.+
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGg--kt~~la~~~~~-~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~ 295 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGG--KTTAIAELMKD-QGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIA 295 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHcCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4556677888878877788899999999999 77778887654 578 666788888876665 55689998 899999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
|+ .+..+.++ +||.||+|+.-.. +.+.++.+ +++++||.+|..-....-
T Consensus 296 Da--~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 296 DA--ERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred ch--hhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 99 66432333 8999999975421 13345454 666669998877665443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=89.37 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+......+...++....-++|||+||++|+ .++.+|..+.. +|+ |+.+|.++++.+.++ ++.+.|+. |+++.+
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~--kt~~la~~~~~-~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~ 308 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGG--KSTFMAELMQN-RGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEG 308 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCH--HHHHHHHHhCC-CcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3444455555555555555799999999999 78778887654 567 677788888877665 45688998 999999
Q ss_pred CCCchhhcCCCCCccEEEEeCCcc-------------------------CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRK-------------------------DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K~-------------------------~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+ .+..+. .+||.||+|+--. ...+.++.+ .++++||.+|..-..
T Consensus 309 Da--~~~~~~-~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 309 DA--RSFSPE-EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cc--cccccC-CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99 765432 3799999996321 112345555 566679999886643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=84.09 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=81.0
Q ss_pred CCCHHHHHHHHHHHH-h---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--e
Q 027826 24 SHESGVAELVSAMAA-G---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--P 96 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~-~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i 96 (218)
+..|++..++...+. . .++++|||+|||+|+ .++.+|...+ +.+ ++.+|.+++..+.++.+ ...|+. |
T Consensus 100 ipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~~~la~~~~--~~~-v~avDis~~al~~A~~n~~~~~~~~~i 174 (284)
T TIGR03533 100 IPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGC--IAIACAYAFP--EAE-VDAVDISPDALAVAEINIERHGLEDRV 174 (284)
T ss_pred cCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 345777787777654 2 346899999999999 6666776543 467 66678888887777654 577875 9
Q ss_pred EEEEcCCCchhhcCCCCCccEEEEeCCc----------------------------cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 97 QVITGEADDEELMDGLVDIDFLVVDSRR----------------------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~~fDfVFIDa~K----------------------------~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+++.||+ .+.++. .+||+|+.|-.- +.|...++.+ +++++||.++++-
T Consensus 175 ~~~~~D~--~~~~~~-~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 175 TLIQSDL--FAALPG-RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred EEEECch--hhccCC-CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999 776542 279999987210 1244555555 5666699998763
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.8e-08 Score=84.21 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=72.1
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhC-C-C--c-eEEEEcCCCchhhcCCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEA-G-F--S-PQVITGEADDEELMDGL 112 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~a-g-l--~-i~~i~GdA~~~e~L~~l 112 (218)
..+|++|||||+|+|. ++..++... ...+ ++.+|.+++..+.++.+ ... + + . ++++.+|+ .+.+++.
T Consensus 70 ~~~p~~VL~iG~G~G~--~~~~ll~~~--~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~--~~~l~~~ 142 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGG--VLREVLKHK--SVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG--FKFLADT 142 (270)
T ss_pred CCCCCEEEEEcCCchH--HHHHHHhCC--Ccce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch--HHHHHhC
Confidence 3578999999999998 554444422 1345 77788999887766544 322 2 2 2 88999999 9998876
Q ss_pred C-CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEe
Q 027826 113 V-DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 113 ~-~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+ +||+|++|+.... ..++++.+ +++++||++++.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5 9999999986221 35677777 555569999886
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-07 Score=87.63 Aligned_cols=122 Identities=16% Similarity=0.234 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA 103 (218)
+....+++...++......+|||+||++|. .++.++.... +++ |+.+|.++.+...++. +.+.|+.++++.+|+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~--~t~~la~~~~--~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~ 302 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGG--KTAHILELAP--QAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDA 302 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCCh--HHHHHHHHcC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc
Confidence 455566677767777777899999999999 7777777653 367 6677888888776654 468888889999999
Q ss_pred CchhhcCCC--CCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEe-CCCCCCc
Q 027826 104 DDEELMDGL--VDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCK-NAYSRND 153 (218)
Q Consensus 104 ~~~e~L~~l--~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~D-Nvl~~G~ 153 (218)
.+..+.+ .+||.||+|+.-.. +.+.++.+ .++++||.+|.= -.++...
T Consensus 303 --~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~E 379 (427)
T PRK10901 303 --RDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEE 379 (427)
T ss_pred --ccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhh
Confidence 7643323 37999999985321 23455555 556668887744 3455443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.6e-07 Score=80.49 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA 103 (218)
.....++...++......+||++||+.|. -++.||..+.. .|+ |+.+|.++.+.+.++ ++.+.|+. |+++.+|+
T Consensus 56 qd~~s~~~~~~l~~~~g~~VLDl~ag~G~--kt~~la~~~~~-~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~ 131 (264)
T TIGR00446 56 QEASSMIPPLALEPDPPERVLDMAAAPGG--KTTQISALMKN-EGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDG 131 (264)
T ss_pred ECHHHHHHHHHhCCCCcCEEEEECCCchH--HHHHHHHHcCC-CCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH
Confidence 33444554445555555789999999999 77778877654 467 667788888876655 55788987 99999999
Q ss_pred CchhhcCCCCCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.........||.||+|+.-.. ..+.++.+ +++++||.+|.---
T Consensus 132 --~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 132 --RVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred --HHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 664333347999999974221 22355554 66677999886543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=78.02 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=72.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCC-C--C
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGL-V--D 114 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l-~--~ 114 (218)
.+..+|||||||+|. .++.||...+ ++. ++.+|.++++...++ ...+.|+. ++++.||+ .+.++.+ + .
T Consensus 15 ~~~~~ilDiGcG~G~--~~~~la~~~p--~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~--~~~~~~~~~~~~ 87 (194)
T TIGR00091 15 NKAPLHLEIGCGKGR--FLIDMAKQNP--DKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA--NELLDKFFPDGS 87 (194)
T ss_pred CCCceEEEeCCCccH--HHHHHHHhCC--CCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH--HHHHHhhCCCCc
Confidence 467799999999999 7777887654 466 666788887766654 45677887 99999999 8876543 2 7
Q ss_pred ccEEEEeC---C-c-------cCcHHHHHHh-cCCCCCeEEE
Q 027826 115 IDFLVVDS---R-R-------KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 115 fDfVFIDa---~-K-------~~Y~~~~~~~-~L~~~GgvIV 144 (218)
+|.||++- + | -.+.++++.+ +++++||.+.
T Consensus 88 ~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 88 LSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred eeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEE
Confidence 99999974 2 1 1246788887 6666688875
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-07 Score=79.59 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-C
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-V 113 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~ 113 (218)
+.....++|||||||+|. .++-++..... .++ |+.++.++++.+.++.+ ...|+. ++++.||+ .+ ++-- .
T Consensus 73 ~~~~~g~~VLDiG~G~G~--~~~~~a~~~g~-~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~--~~-l~~~~~ 145 (272)
T PRK11873 73 AELKPGETVLDLGSGGGF--DCFLAARRVGP-TGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEI--EA-LPVADN 145 (272)
T ss_pred ccCCCCCEEEEeCCCCCH--HHHHHHHHhCC-CCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch--hh-CCCCCC
Confidence 345567899999999998 66555655443 567 66678888877776654 577887 99999998 55 3322 3
Q ss_pred CccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+||+|+..+. ..+....|+.+ +++++||.+++-++...+
T Consensus 146 ~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 146 SVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred ceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 8999998864 23456788887 777779999887665443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.6e-07 Score=78.44 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=86.0
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCCC
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGLV 113 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l~ 113 (218)
+.......+||+||||||- .|+.+++... .|+ |+-++.++.+...++ ...+.|.. |++++||| .+ || ++
T Consensus 46 ~~~~~~g~~vLDva~GTGd--~a~~~~k~~g--~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA--e~-LP-f~ 116 (238)
T COG2226 46 LLGIKPGDKVLDVACGTGD--MALLLAKSVG--TGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDA--EN-LP-FP 116 (238)
T ss_pred hhCCCCCCEEEEecCCccH--HHHHHHHhcC--Cce-EEEEECCHHHHHHHHHHhhccCccceEEEEech--hh-CC-CC
Confidence 3333367899999999999 8888999876 588 666788888877664 56677777 99999999 44 66 53
Q ss_pred --CccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 114 --DIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 114 --~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
+||+|.+.-- -.+++..++.+ ++++|||.+++-....+..
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 9999999854 35777788887 8888899999988887653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-07 Score=74.16 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEEEcCCCchhh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEADDEEL 108 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i~GdA~~~e~ 108 (218)
++|...+.....++|||+|||+|+ -++.+|...+ ..+ |+.+|.++...+.++. +...+++ ++++.+|. .+.
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~--i~~~la~~~~--~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~--~~~ 93 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGV--ISLALAKRGP--DAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDL--FEA 93 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSH--HHHHHHHTST--CEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESST--TTT
T ss_pred HHHHHHHhhccCCeEEEecCChHH--HHHHHHHhCC--CCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccc--ccc
Confidence 355555555589999999999999 4555666433 456 6667888887777754 5688888 99999999 776
Q ss_pred cCCCCCccEEEEeCC----cc----CcHHHHHHh-cCCCCCeEE
Q 027826 109 MDGLVDIDFLVVDSR----RK----DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 109 L~~l~~fDfVFIDa~----K~----~Y~~~~~~~-~L~~~GgvI 143 (218)
++ -.+||+|+..-. .. ...++++.+ +.+++||.+
T Consensus 94 ~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 94 LP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp CC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred cc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 66 349999999742 11 245556666 444448866
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=88.16 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=72.6
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH---hh---CCC--c-eEEEEcCCCchhhc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL---GE---AGF--S-PQVITGEADDEELM 109 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~---~~---agl--~-i~~i~GdA~~~e~L 109 (218)
..+|++||+||+|+|. ++..+++. +...+ ++.+|.+++..+.++.+ .+ ..+ . ++++.+|+ .+.+
T Consensus 295 ~~~~~rVL~IG~G~G~--~~~~ll~~--~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da--~~~l 367 (521)
T PRK03612 295 SARPRRVLVLGGGDGL--ALREVLKY--PDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA--FNWL 367 (521)
T ss_pred CCCCCeEEEEcCCccH--HHHHHHhC--CCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH--HHHH
Confidence 3589999999999998 66544431 21246 78889999988877652 11 122 2 89999999 9988
Q ss_pred CCCC-CccEEEEeCCcc-------C-cHHHHHHh-cCCCCCeEEEEe
Q 027826 110 DGLV-DIDFLVVDSRRK-------D-FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K~-------~-Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+..+ +||+|++|.... . ..++++.+ +.+++||++++.
T Consensus 368 ~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 368 RKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 8765 999999997422 2 23578787 556669999875
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-07 Score=78.59 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=73.0
Q ss_pred HHHHHHHHHH--HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC
Q 027826 27 SGVAELVSAM--AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L--~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~ 104 (218)
...+.+|.-+ +....-.+|||+|||+|+ .++.||.... .|+ |+.+|.++++.+......+.--.|.++.||+
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~--~~~~la~~v~--~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~- 129 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGT--TVSHVSDIVE--EGV-VYAVEFAPRPMRELLEVAEERKNIIPILADA- 129 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCH--HHHHHHHhcC--CCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCC-
Confidence 3344555544 444566799999999999 7888888764 578 6667888876553332221111278899999
Q ss_pred chhhc--CCC-CCccEEEEeCCc-cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 105 DEELM--DGL-VDIDFLVVDSRR-KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 105 ~~e~L--~~l-~~fDfVFIDa~K-~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.+.. ..+ ++||+||.|... .++...++.+ +++++||.+++-
T Consensus 130 -~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 130 -RKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred -CCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5421 123 379999998753 2334456666 566668888773
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-06 Score=80.10 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhc--------CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eE
Q 027826 29 VAELVSAMAAGW--------DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQ 97 (218)
Q Consensus 29 ~g~fL~~L~~~~--------~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~ 97 (218)
+.+++..+++.. ..++|||||||+|. .++.|+... +.+ |+.++.++.+.+.++.. .+.|+. ++
T Consensus 98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~--~~~~La~~~---g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~ 171 (340)
T PLN02244 98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGG--SSRYLARKY---GAN-VKGITLSPVQAARANALAAAQGLSDKVS 171 (340)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCH--HHHHHHHhc---CCE-EEEEECCHHHHHHHHHHHHhcCCCCceE
Confidence 344555555433 45799999999999 777777653 457 66778888877766654 467774 99
Q ss_pred EEEcCCCchhhcCC-CCCccEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEe
Q 027826 98 VITGEADDEELMDG-LVDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 98 ~i~GdA~~~e~L~~-l~~fDfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
++.+|+ .+. +- -++||+|+.-..-. +-..+++.+ +++++||.+++-
T Consensus 172 ~~~~D~--~~~-~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 172 FQVADA--LNQ-PFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred EEEcCc--ccC-CCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999999 663 32 23899999743322 345677776 666668887763
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.6e-07 Score=70.03 Aligned_cols=95 Identities=23% Similarity=0.291 Sum_probs=69.4
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCC--CCccE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGL--VDIDF 117 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l--~~fDf 117 (218)
.+|||+|||+|. ..+.++... ..+ ++.+|.++...+.++.+ ...++. ++++.+|+ .+..+.+ .+||+
T Consensus 2 ~~vlD~~~G~G~--~~~~~~~~~---~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 2 DRVLDPGCGSGT--FLLAALRRG---AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA--RDLPEPLPDGKFDL 73 (117)
T ss_dssp EEEEEETSTTCH--HHHHHHHHC---TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH--HHHHHTCTTT-EEE
T ss_pred CEEEEcCcchHH--HHHHHHHHC---CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECch--hhchhhccCceeEE
Confidence 479999999999 666666553 246 77789999887777655 578875 99999999 9988555 39999
Q ss_pred EEEeCCcc-----------CcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSRRK-----------DFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~K~-----------~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+.|-.-. .|..+++.+ +++++||++++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99985533 246677777 66666888764
|
... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-07 Score=80.86 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHH-hc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eE
Q 027826 25 HESGVAELVSAMAA-GW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQ 97 (218)
Q Consensus 25 i~p~~g~fL~~L~~-~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~ 97 (218)
..|++..++...+. .. ++++|||+|||+|+ .++.+|...+ +.+ ++.+|.++.....++.+ ...|+. |+
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~--iai~la~~~p--~~~-V~avDis~~al~~A~~n~~~~~l~~~i~ 187 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGC--IAIACAYAFP--DAE-VDAVDISPDALAVAEINIERHGLEDRVT 187 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEE
Confidence 45677777776543 21 23789999999999 6666776543 467 66678888887777655 577875 99
Q ss_pred EEEcCCCchhhcCCCCCccEEEEeCC----------------------------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 98 VITGEADDEELMDGLVDIDFLVVDSR----------------------------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~~fDfVFIDa~----------------------------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
++++|+ .+.++. .+||+|+.+-. -+.|...++.+ +.+++||.+++.
T Consensus 188 ~~~~D~--~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 188 LIESDL--FAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred EEECch--hhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999 776652 37999998721 01245556666 556669999875
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=75.42 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=70.0
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
...+.++|||||||+|. .+..|+...+ +++ ++.++.++.+...++.. +. ++++.+|+ .+..+. .+||
T Consensus 28 ~~~~~~~vLDiGcG~G~--~~~~la~~~~--~~~-v~gvD~s~~~i~~a~~~----~~~~~~~~~d~--~~~~~~-~~fD 95 (258)
T PRK01683 28 PLENPRYVVDLGCGPGN--STELLVERWP--AAR-ITGIDSSPAMLAEARSR----LPDCQFVEADI--ASWQPP-QALD 95 (258)
T ss_pred CCcCCCEEEEEcccCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHh----CCCCeEEECch--hccCCC-CCcc
Confidence 44567899999999999 7777887653 467 66667888776665532 23 78999999 654332 3899
Q ss_pred EEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 117 FLVVDSRR---KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 117 fVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+||....- .+...+++.+ +++++||.+++-
T Consensus 96 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 96 LIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99988653 3566777777 666669988873
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=75.72 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=67.6
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-C
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-V 113 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~ 113 (218)
.+....+.+|||+|||+|+ .++.||.. +.+ |+.++.++.+.+.++.. .+.|+.+++..+|. .+. .+ +
T Consensus 25 ~~~~~~~~~vLDiGcG~G~--~a~~la~~----g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~--~~~--~~~~ 93 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGR--NSLYLSLA----GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDI--NAA--ALNE 93 (195)
T ss_pred HhccCCCCcEEEeCCCCCH--HHHHHHHC----CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccc--hhc--cccC
Confidence 3455678999999999999 77777752 457 66678888877666544 46777777777777 431 12 3
Q ss_pred CccEEEEe-----CCccCcHHHHHHh-cCCCCCeEE
Q 027826 114 DIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 114 ~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
+||+||.- .+.+....+++.+ +++++||.+
T Consensus 94 ~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 129 (195)
T TIGR00477 94 DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYN 129 (195)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEE
Confidence 79999643 2334567788887 666669973
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.7e-07 Score=74.94 Aligned_cols=109 Identities=15% Similarity=0.225 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e 107 (218)
.|..+|.....-+++|+++||+|. +|+..+.+ +...++.+|.++.....++. +...++. ++++.+|+ .+
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~----lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~--~~ 110 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGL----LGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA--LR 110 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcH----HHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH--HH
Confidence 344444444567899999999998 33333323 33337778998887766654 4567775 89999999 98
Q ss_pred hcCCC---C-CccEEEEeCC--ccCcHHHHHHh---cCCCCCeEEEEeC
Q 027826 108 LMDGL---V-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 108 ~L~~l---~-~fDfVFIDa~--K~~Y~~~~~~~---~L~~~GgvIV~DN 147 (218)
.|+.+ . .||+||+|-. +..|.+.++.+ .+++++|+||+-.
T Consensus 111 ~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 111 ALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 88754 2 4899999974 45677778776 5667799998753
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=74.23 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHhc--CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMAAGW--DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~--~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~ 100 (218)
..|++..++..+.... ++++|||+|||+|+ .++.++...+ +.+ ++.+|.++.+...++.+ ...++. ++++.
T Consensus 69 p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~--~~~~l~~~~~--~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 143 (251)
T TIGR03534 69 PRPDTEELVEAALERLKKGPLRVLDLGTGSGA--IALALAKERP--DAR-VTAVDISPEALAVARKNAARLGLDNVTFLQ 143 (251)
T ss_pred CCCChHHHHHHHHHhcccCCCeEEEEeCcHhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEE
Confidence 3456667777776655 34599999999999 6666776543 356 66678888887776654 577887 99999
Q ss_pred cCCCchhhcCCCCCccEEEEe
Q 027826 101 GEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFID 121 (218)
+|+ .+.++ -.+||+|+.+
T Consensus 144 ~d~--~~~~~-~~~fD~Vi~n 161 (251)
T TIGR03534 144 SDW--FEPLP-GGKFDLIVSN 161 (251)
T ss_pred Cch--hccCc-CCceeEEEEC
Confidence 999 77443 2489999985
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-07 Score=82.74 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEE--EEc
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQV--ITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~--i~G 101 (218)
+.....+++..++......+|||+||+.|+ .++.+|..++ +|+ |+.+|.++++...++ ++.+.|+.+++ +.|
T Consensus 222 ~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~--kt~~la~~~~--~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~ 296 (426)
T TIGR00563 222 VQDASAQWVATWLAPQNEETILDACAAPGG--KTTHILELAP--QAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDG 296 (426)
T ss_pred EECHHHHHHHHHhCCCCCCeEEEeCCCccH--HHHHHHHHcC--CCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 344566777777776677899999999999 7777887764 578 666688888776655 55688887444 667
Q ss_pred CCCchhhcC--CCCCccEEEEeCCccC-------------------------cHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 102 EADDEELMD--GLVDIDFLVVDSRRKD-------------------------FARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~--~l~~fDfVFIDa~K~~-------------------------Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
|+ .+... .-.+||.||+|+.-.. ..+.++.+ +++++||.+|.--.-.
T Consensus 297 d~--~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 297 DG--RGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cc--ccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 77 54332 2237999999974221 23455555 6666699888765443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=74.24 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=71.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchhhcCCCCCcc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e~L~~l~~fD 116 (218)
....+|||||||+|. .++.|+..+..++++ ++.++.++++.+.++. +.+.+.. ++++.||+ .+.. ++.+|
T Consensus 55 ~~~~~vLDlGcGtG~--~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~--~~~~--~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGA--ATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI--RDIA--IENAS 127 (247)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh--hhCC--CCCCC
Confidence 356799999999999 777787765444678 6667888888777654 4566664 99999999 6542 23688
Q ss_pred EEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEE-eCCCCCC
Q 027826 117 FLVVDSR-----RKDFARVLRLA-NLSSRGAVLVC-KNAYSRN 152 (218)
Q Consensus 117 fVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~-DNvl~~G 152 (218)
+|+.-.. ..+-..+++.+ +.+++||.+++ |.+...+
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~ 170 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 170 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCc
Confidence 8775321 12335677777 55555776555 5554444
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=73.01 Aligned_cols=116 Identities=8% Similarity=0.115 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHh--cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcC
Q 027826 28 GVAELVSAMAAG--WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGE 102 (218)
Q Consensus 28 ~~g~fL~~L~~~--~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~Gd 102 (218)
+..+++..++.. ....+|||||||+|. .++.++.....++++ ++.++.++++.+.++. +...+.. ++++.||
T Consensus 38 ~~~~~~~~l~~~~~~~~~~iLDlGcG~G~--~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d 114 (239)
T TIGR00740 38 NIITAIGMLAERFVTPDSNVYDLGCSRGA--ATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCND 114 (239)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCCH--HHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECC
Confidence 344444444432 245689999999999 777788765444678 6667888888777654 4455543 8999999
Q ss_pred CCchhhcCCCCCccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+ .+.- ++.+|+|+.-..- ++...+++.+ +.+++||.+++-+.+.
T Consensus 115 ~--~~~~--~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 115 I--RHVE--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred h--hhCC--CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9 6532 3468887765321 2335677777 5555588877765443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=61.63 Aligned_cols=95 Identities=28% Similarity=0.297 Sum_probs=65.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcC-CCCCccEEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMD-GLVDIDFLVV 120 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~-~l~~fDfVFI 120 (218)
+|+|+||+.|. .+..++. ....+ ++.+|.+++....++.. ...+.. ++++.+|. .+... ...+||+||.
T Consensus 1 ~ildig~G~G~--~~~~~~~---~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGA--LALALAS---GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDA--EELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccH--HHHHHhc---CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcCh--hhhccccCCceEEEEE
Confidence 58999999998 6655665 22456 66678888776666533 333334 89999999 77665 3458999999
Q ss_pred eCCc----cCcHHHHHHh-cCCCCCeEEEEe
Q 027826 121 DSRR----KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 121 Da~K----~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+..- ..+..+++.+ .++++||.+++-
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 8863 2456677776 555568888763
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-06 Score=68.79 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCc
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~ 105 (218)
..+|...+...+.++|||+||++|+ +++.++.. +.+ ++.+|.++++...++ ++...++. ++++.+|.
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~--~~~~l~~~----~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~-- 82 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGI--VAIVAAKN----GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL-- 82 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCH--HHHHHHhh----cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc--
Confidence 3444455555788899999999999 77666653 456 666788888766654 44566665 88899999
Q ss_pred hhhcCCCCCccEEEEeC
Q 027826 106 EELMDGLVDIDFLVVDS 122 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa 122 (218)
.+.+++. +||+|+.+.
T Consensus 83 ~~~~~~~-~~d~vi~n~ 98 (188)
T PRK14968 83 FEPFRGD-KFDVILFNP 98 (188)
T ss_pred ccccccc-CceEEEECC
Confidence 7655432 799998763
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.4e-07 Score=76.23 Aligned_cols=123 Identities=17% Similarity=0.146 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhc--CCCCcEEEEEEcCCccHHHHHHHHhhCCCc--eEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVAS--RHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~--~~~~G~vitt~e~~~~~~~~a~~~~~agl~--i~~i 99 (218)
+..|...-.++.|+-..+|+.|+|+|++.|= |++++|.-+ ....|+|++ ++.+.... -.+......+. |+++
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GG--Sli~~A~ml~~~~~~~~Vig-iDIdir~~-~~~a~e~hp~~~rI~~i 90 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGG--SLIFWASMLELLGGKGKVIG-IDIDIRPH-NRKAIESHPMSPRITFI 90 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSH--HHHHHHHHHHHTT---EEEE-EES-GTT---S-GGGG----TTEEEE
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCc--hHHHHHHHHHHhCCCceEEE-EeCCcchh-chHHHhhccccCceEEE
Confidence 5678888999999999999999999999996 999876533 234678555 45533111 11222233333 9999
Q ss_pred EcCCCchhhcCCCC------CccEEEEeCC--ccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 100 TGEADDEELMDGLV------DIDFLVVDSR--RKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 100 ~GdA~~~e~L~~l~------~fDfVFIDa~--K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.||.++.+++.++. ...+|+.|++ .++-..-|+++ .++++|+.+|+-++..
T Consensus 91 ~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 91 QGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp ES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 99997777776642 5679999998 34555566666 7777799998877754
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=73.81 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=67.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
...+.+|||+|||+|. .++.||.. +.+ |+.++.++++.+.++.. ...++. ++++.+|. .+.-. -++||
T Consensus 28 ~~~~~~vLDiGcG~G~--~a~~La~~----g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~--~~~~~-~~~fD 97 (197)
T PRK11207 28 VVKPGKTLDLGCGNGR--NSLYLAAN----GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDL--NNLTF-DGEYD 97 (197)
T ss_pred cCCCCcEEEECCCCCH--HHHHHHHC----CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh--hhCCc-CCCcC
Confidence 4567999999999999 77777752 446 77778888877766654 477877 89999988 55311 13799
Q ss_pred EEEEeC-----CccCcHHHHHHh-cCCCCCeEE
Q 027826 117 FLVVDS-----RRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 117 fVFIDa-----~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
+|+.=. ....-..+++.+ .++++||.+
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEE
Confidence 997532 223456777777 666669974
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-06 Score=70.29 Aligned_cols=110 Identities=17% Similarity=0.103 Sum_probs=73.8
Q ss_pred HHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCceEEEEcCCCchhhcC
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFSPQVITGEADDEELMD 110 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~i~~i~GdA~~~e~L~ 110 (218)
.+..++......+|||+||++|. .++.++....+ +++ ++.++.++.+...++.... .+..++++.+|+ .+.--
T Consensus 10 ~~~~~~~~~~~~~vLdiG~G~G~--~~~~~a~~~~~-~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~--~~~~~ 83 (241)
T PRK08317 10 RTFELLAVQPGDRVLDVGCGPGN--DARELARRVGP-EGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDA--DGLPF 83 (241)
T ss_pred HHHHHcCCCCCCEEEEeCCCCCH--HHHHHHHhcCC-CcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEeccc--ccCCC
Confidence 34445566677899999999998 77777776532 567 5566788877666655432 222389999998 54211
Q ss_pred CCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 111 GLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 111 ~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.-.+||+|+...-- .+...+++.+ +++++||.+++-.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 12389999987432 3566777777 6666688877644
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=70.69 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCCCccE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~~fDf 117 (218)
...+|||+||++|. .++.++...++ ..+ ++.+|.++.+.+.++.. ...++. ++++.+|+ .+....-.+||+
T Consensus 51 ~~~~vldiG~G~G~--~~~~l~~~~~~-~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGD--LAIALAKAVGK-TGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA--EALPFPDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCH--HHHHHHHHcCC-CCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEeccc--ccCCCCCCCccE
Confidence 45799999999999 78778776642 467 66667888776666544 444443 89999999 664322248999
Q ss_pred EEEeCC---ccCcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSR---RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|++... ..+....++.+ .++++||.+++
T Consensus 125 I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 125 VTIAFGLRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred EEEecccccCCCHHHHHHHHHHhccCCcEEEE
Confidence 998643 34567777777 66666886654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.47 E-value=1e-06 Score=76.76 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcC
Q 027826 27 SGVAELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGE 102 (218)
Q Consensus 27 p~~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~Gd 102 (218)
+.+...|..|.+. .+.++||++|||+|+ .++.++.. . ..+ ++.++.++.+.+.++. ....++. +++..|+
T Consensus 104 ~tt~~~l~~l~~~~~~~~~VLDiGcGsG~--l~i~~~~~--g-~~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~ 177 (250)
T PRK00517 104 PTTRLCLEALEKLVLPGKTVLDVGCGSGI--LAIAAAKL--G-AKK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGD 177 (250)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCcHHH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCC
Confidence 4555666666654 478899999999998 66544432 1 235 6667888888776654 4567774 4444333
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
. +||+|+.+...+.+..+++.+ +++++||.+++-.+.
T Consensus 178 ~----------~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 L----------KADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred C----------CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 2 799999888777777888877 666669999886554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=76.75 Aligned_cols=108 Identities=10% Similarity=0.005 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCchhhc
Q 027826 33 VSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADDEELM 109 (218)
Q Consensus 33 L~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~~e~L 109 (218)
+...+...+.++||+||||+|. .++.+++..+ +.+ ++.++. ++..+.++ +..+.|+. |+++.||+ .+.
T Consensus 141 l~~~~~~~~~~~vlDiG~G~G~--~~~~~~~~~p--~~~-~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~--~~~- 211 (306)
T TIGR02716 141 LLEEAKLDGVKKMIDVGGGIGD--ISAAMLKHFP--ELD-STILNL-PGAIDLVNENAAEKGVADRMRGIAVDI--YKE- 211 (306)
T ss_pred HHHHcCCCCCCEEEEeCCchhH--HHHHHHHHCC--CCE-EEEEec-HHHHHHHHHHHHhCCccceEEEEecCc--cCC-
Confidence 3334445677899999999999 7888888765 467 555555 45555554 55688887 99999999 642
Q ss_pred CCCCCccEEEEeC-----CccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 110 DGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 110 ~~l~~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.++++|+|++-. +.+.....++.+ +.++|||.+++-+..+
T Consensus 212 -~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 212 -SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred -CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 234679987654 333445678777 5555577665544444
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=76.21 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHh---cCC-CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEE
Q 027826 26 ESGVAELVSAMAAG---WDA-RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQV 98 (218)
Q Consensus 26 ~p~~g~fL~~L~~~---~~a-k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~ 98 (218)
.|++..++...... .++ ++|||+|||+|+ .++.+|...+ +.+ ++.+|.+++....++.+ ...++. +++
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~--i~l~la~~~~--~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~ 169 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGC--IALALAYEFP--NAE-VIAVDISPDALAVAEENAEKNQLEHRVEF 169 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence 46677777665533 233 699999999999 5666776543 457 66678888877777655 577775 999
Q ss_pred EEcCCCchhhcCCCCCccEEEEeCC----------c------------------cCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 99 ITGEADDEELMDGLVDIDFLVVDSR----------R------------------KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 99 i~GdA~~~e~L~~l~~fDfVFIDa~----------K------------------~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+.||. .+.++. .+||+|+.+-. + ..|..+++.+ ..+++||++++.--.
T Consensus 170 ~~~d~--~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 170 IQSNL--FEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred EECch--hccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 99999 775542 27999998510 0 1355566666 555669998775543
Q ss_pred CCC
Q 027826 150 SRN 152 (218)
Q Consensus 150 ~~G 152 (218)
+.+
T Consensus 247 ~q~ 249 (284)
T TIGR00536 247 WQQ 249 (284)
T ss_pred cHH
Confidence 333
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=76.19 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcC
Q 027826 27 SGVAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGE 102 (218)
Q Consensus 27 p~~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~Gd 102 (218)
|.+.-.|.+|-+.. ..++||++|||+|+ .++.+++. . .++ ++.++.++.+.+.++.+ ...++. ++++.++
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~--lai~aa~~--g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~ 217 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGI--LSIAALKL--G-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIY 217 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecc
Confidence 55555566665433 56899999999999 66655542 1 246 66678888877776654 566766 6667666
Q ss_pred CCchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
. ....+ .+||+|+.+.-...+.++++.+ +++++||.+++-.++
T Consensus 218 ~--~~~~~--~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 218 L--EQPIE--GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred c--ccccC--CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 5 33221 3899999988777777888887 666669999887665
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=72.98 Aligned_cols=108 Identities=14% Similarity=0.016 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchh
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e 107 (218)
....+...+.+..++.+|||||||+|+ .+..|+..++ +++ ++.++.++++.+.++.... .++++.||+ .+
T Consensus 30 ~~~~~~~~l~~~~~~~~VLDiGCG~G~--~~~~L~~~~~--~~~-v~giDiS~~~l~~A~~~~~---~~~~~~~d~--~~ 99 (204)
T TIGR03587 30 KLAMFARALNRLPKIASILELGANIGM--NLAALKRLLP--FKH-IYGVEINEYAVEKAKAYLP---NINIIQGSL--FD 99 (204)
T ss_pred HHHHHHHHHHhcCCCCcEEEEecCCCH--HHHHHHHhCC--CCe-EEEEECCHHHHHHHHhhCC---CCcEEEeec--cC
Confidence 334445555566678899999999999 7777776543 456 7777888888777654321 267889999 76
Q ss_pred hcCCC-CCccEEEEeCCcc-----CcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 108 LMDGL-VDIDFLVVDSRRK-----DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 108 ~L~~l-~~fDfVFIDa~K~-----~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+.- .+||+||....-. .....++.+ ++.+ + .+++.+..
T Consensus 100 --~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~-~v~i~e~~ 144 (204)
T TIGR03587 100 --PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-R-YILIAEYY 144 (204)
T ss_pred --CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-c-EEEEEEee
Confidence 322 3899999866432 223344444 4443 4 55554443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-06 Score=73.02 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=66.7
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
......+|||||||+|. .+..|+...+ +++ ++-++.++.+...++. .+ ++++.+|+ .+.. .-.+||+
T Consensus 26 ~~~~~~~vLDlGcG~G~--~~~~l~~~~p--~~~-v~gvD~s~~~~~~a~~---~~--~~~~~~d~--~~~~-~~~~fD~ 92 (255)
T PRK14103 26 GAERARRVVDLGCGPGN--LTRYLARRWP--GAV-IEALDSSPEMVAAARE---RG--VDARTGDV--RDWK-PKPDTDV 92 (255)
T ss_pred CCCCCCEEEEEcCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHh---cC--CcEEEcCh--hhCC-CCCCceE
Confidence 34567899999999999 6766777543 567 5666788877665542 22 78899999 7653 3358999
Q ss_pred EEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 118 LVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 118 VFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+...-- .+-...++.+ ++++|||.+++
T Consensus 93 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 93 VVSNAALQWVPEHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred EEEehhhhhCCCHHHHHHHHHHhCCCCcEEEE
Confidence 9997642 2335566666 55666999887
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=82.01 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
+.+|||+|||+|+ .++.+|...+ +.+ ++.+|.+++..+.++.+ ...|+. ++++.||. .+.++. .+||+|
T Consensus 139 ~~~VLDlG~GsG~--iai~la~~~p--~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~--~~~~~~-~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGC--IAISLLCELP--NAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW--FENIEK-QKFDFI 210 (506)
T ss_pred CCEEEEccCchhH--HHHHHHHHCC--CCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecch--hhhCcC-CCccEE
Confidence 4689999999999 6766777654 467 66678888887777655 577875 89999999 765542 379999
Q ss_pred EEe
Q 027826 119 VVD 121 (218)
Q Consensus 119 FID 121 (218)
+.+
T Consensus 211 vsN 213 (506)
T PRK01544 211 VSN 213 (506)
T ss_pred EEC
Confidence 973
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-06 Score=71.82 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=70.8
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCchhhcCCCCCccEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
++||||||++|. .++.+|...+ +.+ ++.++.++++...++. +.+.|+. ++++.+|+ .+. +.-++||+|+
T Consensus 1 ~~vLDiGcG~G~--~~~~la~~~~--~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~--~~~-~~~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGS--DLIDLAERHP--HLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS--AKD-PFPDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc--ccC-CCCCCCCEee
Confidence 589999999998 7777777653 356 6667788887766654 4678886 89999998 554 1113899998
Q ss_pred EeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 120 VDSR---RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 120 IDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.-.- -.+...+|+.+ ++++|||.+++-+..
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 5321 13467888888 666669988876654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=74.72 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=69.6
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC-CCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l-~~fD 116 (218)
......+||||||++|. .+..||.. .+++ ++.++.++.+...++......-.++++.+|+ .+. +-- .+||
T Consensus 49 ~l~~~~~VLDiGcG~G~--~a~~la~~---~~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~--~~~-~~~~~~FD 119 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGG--GCKYINEK---YGAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDI--LKK-DFPENTFD 119 (263)
T ss_pred CCCCCCEEEEEcCCCCh--hhHHHHhh---cCCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCc--ccC-CCCCCCeE
Confidence 34566799999999998 67666653 2457 6667888877766654432222389999999 542 211 3899
Q ss_pred EEEE-eCC----ccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 117 FLVV-DSR----RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 117 fVFI-Da~----K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
+|+. ++- ..+-..+++.+ ++++|||.+++-+..
T Consensus 120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9998 542 23556788887 666668888875543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.5e-06 Score=74.88 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=68.8
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCCC-Cc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l~-~f 115 (218)
...++.+|||+|||+|. .++.||.. +.+ |+.++.++.+.+.++.. ...++.+++..+|. .+. .++ +|
T Consensus 117 ~~~~~~~vLDlGcG~G~--~~~~la~~----g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~--~~~--~~~~~f 185 (287)
T PRK12335 117 QTVKPGKALDLGCGQGR--NSLYLALL----GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDI--NSA--SIQEEY 185 (287)
T ss_pred hccCCCCEEEeCCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEech--hcc--cccCCc
Confidence 44678899999999999 77767652 567 66778888877766554 46777888888888 442 123 89
Q ss_pred cEEEEeC-----CccCcHHHHHHh-cCCCCCeEEE
Q 027826 116 DFLVVDS-----RRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 116 DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
|+|+.=. +.++.+.+++.+ +++++||.++
T Consensus 186 D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 186 DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 9997653 334667788887 6666699743
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=74.80 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCCCchhhcCCC
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEADDEELMDGL 112 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA~~~e~L~~l 112 (218)
.++......+||++|||+|. .++.++..+.+ +|+ |+.++.++++.+.++ ...+.+.. |+++.||| .+ ||--
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~--~~~~l~~~~~~-~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da--~~-lp~~ 113 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGD--VTRELARRVGP-NGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDA--ED-LPFP 113 (233)
T ss_dssp HHHT--S--EEEEET-TTSH--HHHHHGGGSS----E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT--TB---S-
T ss_pred hccCCCCCCEEEEeCCChHH--HHHHHHHHCCC-ccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH--HH-hcCC
Confidence 34456677899999999999 77778877654 678 555678888877765 45677776 99999999 55 4432
Q ss_pred -CCccEEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 -VDIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 -~~fDfVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++||.|++=-- -.+....++.+ ++++|||.+++=.
T Consensus 114 d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 38999997643 24566677776 7777799776533
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.8e-06 Score=78.59 Aligned_cols=95 Identities=21% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC----CC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL----VD 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l----~~ 114 (218)
+..+|||+|||+|+ .++.||... .+ |+.+|.++++.+.++.+ ...|+. ++++.||+ .+.++++ .+
T Consensus 292 ~~~~vLDl~cG~G~--~sl~la~~~----~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--~~~l~~~~~~~~~ 362 (431)
T TIGR00479 292 GEELVVDAYCGVGT--FTLPLAKQA----KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--ETVLPKQPWAGQI 362 (431)
T ss_pred CCCEEEEcCCCcCH--HHHHHHHhC----CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH--HHHHHHHHhcCCC
Confidence 45799999999999 777777642 35 66778888887777654 567887 99999999 8887764 26
Q ss_pred ccEEEEeCCccC-cHHHHHHh-cCCCCCeEEEE
Q 027826 115 IDFLVVDSRRKD-FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 115 fDfVFIDa~K~~-Y~~~~~~~-~L~~~GgvIV~ 145 (218)
||+|++|..... +.+.++.+ .+.+ +++|.+
T Consensus 363 ~D~vi~dPPr~G~~~~~l~~l~~l~~-~~ivyv 394 (431)
T TIGR00479 363 PDVLLLDPPRKGCAAEVLRTIIELKP-ERIVYV 394 (431)
T ss_pred CCEEEECcCCCCCCHHHHHHHHhcCC-CEEEEE
Confidence 999999998654 88898887 6655 677644
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.2e-06 Score=73.02 Aligned_cols=104 Identities=10% Similarity=0.062 Sum_probs=69.5
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h---hCCCc-eEEEEcCCCchhhcCCC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G---EAGFS-PQVITGEADDEELMDGL 112 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~---~agl~-i~~i~GdA~~~e~L~~l 112 (218)
......+|||+|||+|+ .++.++....+ .++ |+.+|.++++.+.++.. . ..+.. ++++.+|+ .+ +|--
T Consensus 70 ~~~~~~~VLDlGcGtG~--~~~~la~~~~~-~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~--~~-lp~~ 142 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGD--LAFLLSEKVGS-DGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA--TD-LPFD 142 (261)
T ss_pred CCCCCCEEEEECCcCCH--HHHHHHHHhCC-CCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc--cc-CCCC
Confidence 44456799999999999 77767765433 467 66678888887766432 1 22333 99999999 55 3322
Q ss_pred C-CccEEEEeCCcc---CcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 113 V-DIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 113 ~-~fDfVFIDa~K~---~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
+ +||+|++--.-+ +-...+..+ ++++|||.+++-+.
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 2 899998854322 345566666 66666888765443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.5e-06 Score=69.07 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=67.2
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
.++++|||+|||+|+ .+..|+...+ ..+ ++.++.+++....++.... -.++++.+|+ .+....-++||+|+
T Consensus 33 ~~~~~vLDlG~G~G~--~~~~l~~~~~--~~~-~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~--~~~~~~~~~fD~vi 103 (240)
T TIGR02072 33 FIPASVLDIGCGTGY--LTRALLKRFP--QAE-FIALDISAGMLAQAKTKLS--ENVQFICGDA--EKLPLEDSSFDLIV 103 (240)
T ss_pred CCCCeEEEECCCccH--HHHHHHHhCC--CCc-EEEEeChHHHHHHHHHhcC--CCCeEEecch--hhCCCCCCceeEEE
Confidence 456799999999999 7777777654 356 5566777766555543322 1378899999 65432224899999
Q ss_pred EeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 120 VDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 120 IDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
...-- .+...+++.+ +++++||.+++-.
T Consensus 104 ~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 104 SNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 87532 2455677777 6666699988754
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.1e-06 Score=70.09 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=65.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCCCCccEEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
-.+|||+|||+|+ -++.++.. . .++ ++.+|.++.+...++.+ ...++.++++.+|+ .+.++. .+||+|+.
T Consensus 37 ~~~vLDlGcG~G~--~~~~la~~--~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~--~~~~~~-~~fD~Vi~ 107 (223)
T PRK14967 37 GRRVLDLCTGSGA--LAVAAAAA--G-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDW--ARAVEF-RPFDVVVS 107 (223)
T ss_pred CCeEEEecCCHHH--HHHHHHHc--C-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECch--hhhccC-CCeeEEEE
Confidence 3699999999998 55556553 1 246 67778888877766544 56777789999999 775542 38999999
Q ss_pred eCC---------------------cc---CcHHHHHHh-cCCCCCeEEEE
Q 027826 121 DSR---------------------RK---DFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 121 Da~---------------------K~---~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.. ++ .+..+++.+ +++++||.+++
T Consensus 108 npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 108 NPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred CCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 831 00 134456655 56666888875
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-06 Score=67.95 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=68.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEE
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
..+..+|||+||++|+ .+..++...+. .++ ++.++.++.....++......-.++++.+|+ .+....-++||+|
T Consensus 37 ~~~~~~vldiG~G~G~--~~~~~~~~~~~-~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~--~~~~~~~~~~D~i 110 (223)
T TIGR01934 37 VFKGQKVLDVACGTGD--LAIELAKSAPD-RGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADA--EALPFEDNSFDAV 110 (223)
T ss_pred cCCCCeEEEeCCCCCh--hHHHHHHhcCC-Cce-EEEEECCHHHHHHHHHHhccCCCceEEecch--hcCCCCCCcEEEE
Confidence 4478899999999999 77777777643 367 5556777766555543322222289999999 7644222489999
Q ss_pred EEeC---CccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 119 VVDS---RRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 119 FIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+... ...+....++.+ .++++||.+++-.
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEE
Confidence 8753 234556667776 5555688877544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.6e-06 Score=77.86 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=70.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEcCCCchhhcCCCC--Cc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITGEADDEELMDGLV--DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~GdA~~~e~L~~l~--~f 115 (218)
.....+||||||+|. .++.+|...+ +.. ++-+|..+.+...+ +...+.|+. ++++.||| .+.+..++ ++
T Consensus 121 ~~~p~vLEIGcGsG~--~ll~lA~~~P--~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA--~~ll~~~~~~s~ 193 (390)
T PRK14121 121 NQEKILIEIGFGSGR--HLLYQAKNNP--NKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA--RLLLELLPSNSV 193 (390)
T ss_pred CCCCeEEEEcCcccH--HHHHHHHhCC--CCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH--HHhhhhCCCCce
Confidence 345689999999999 8877888764 456 55567777665544 455678888 99999999 88776664 89
Q ss_pred cEEEE---eCC-ccCc-----HHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVV---DSR-RKDF-----ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFI---Da~-K~~Y-----~~~~~~~-~L~~~GgvIV~ 145 (218)
|.|++ |-| |..+ +.+++.+ +++++||.+..
T Consensus 194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 99988 333 2222 5678887 66666886544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=72.61 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCc-eEEEE
Q 027826 26 ESGVAELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFS-PQVIT 100 (218)
Q Consensus 26 ~p~~g~fL~~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~-i~~i~ 100 (218)
.|++..++..+.. ..+..+|||+|||+|. .++.++...+ ..+ ++.+|.++.+...++.+.. .... ++++.
T Consensus 90 r~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~--~~~~la~~~~--~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~ 164 (275)
T PRK09328 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGA--IALALAKERP--DAE-VTAVDISPEALAVARRNAKHGLGARVEFLQ 164 (275)
T ss_pred CCCcHHHHHHHHHhccccCCCEEEEEcCcHHH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4555666665552 3467799999999999 6666777654 467 6666888887777765543 2223 99999
Q ss_pred cCCCchhhcCCCCCccEEEEeCC-----------------------------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR-----------------------------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~-----------------------------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
+|. .+.++ -.+||+|+.+-. ...|..+++.+ +++++||.+++.
T Consensus 165 ~d~--~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 165 GDW--FEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred ccc--cCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 999 66544 138999987521 01245556665 666669999873
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.2e-06 Score=75.62 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCc
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADD 105 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~ 105 (218)
-+-+|..++.....++|||+|||+|. ++|+.|-+-+..+ |+-+|.++++++.|+ +.+.++++ |+++++|.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~----l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di-- 104 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGA----LGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI-- 104 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCH----HHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH--
Confidence 46789999999999999999999998 5566665534567 778899999888775 45678888 99999999
Q ss_pred hhhcCCCC--CccEEEEe
Q 027826 106 EELMDGLV--DIDFLVVD 121 (218)
Q Consensus 106 ~e~L~~l~--~fDfVFID 121 (218)
.+..+... +||+|+.-
T Consensus 105 ~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 105 KEFLKALVFASFDLIICN 122 (248)
T ss_pred HHhhhcccccccCEEEeC
Confidence 88888765 69999864
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=72.02 Aligned_cols=111 Identities=13% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHH----HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eE
Q 027826 24 SHESGVAELVSA----MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~----L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~ 97 (218)
+..+.+++-|.. ++...+..+|||+|||+|. -++.+|. .+.+ |+.+|.++++.+.++.+ ...|+. ++
T Consensus 152 Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~--~sl~la~----~~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~ 224 (315)
T PRK03522 152 QTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGG--FGLHCAT----PGMQ-LTGIEISAEAIACAKQSAAELGLTNVQ 224 (315)
T ss_pred ecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCH--HHHHHHh----cCCE-EEEEeCCHHHHHHHHHHHHHcCCCceE
Confidence 344555444432 2223357899999999999 6666665 2456 66678888887777655 578887 99
Q ss_pred EEEcCCCchhhcCCC-CCccEEEEeCCccCc-HHHHHHh-cCCCCCeEEE
Q 027826 98 VITGEADDEELMDGL-VDIDFLVVDSRRKDF-ARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l-~~fDfVFIDa~K~~Y-~~~~~~~-~L~~~GgvIV 144 (218)
++.||+ .+.++.. .+||+|++|-....+ ....+++ .+.+ +.+|.
T Consensus 225 ~~~~D~--~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~-~~ivy 271 (315)
T PRK03522 225 FQALDS--TQFATAQGEVPDLVLVNPPRRGIGKELCDYLSQMAP-RFILY 271 (315)
T ss_pred EEEcCH--HHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHcCC-CeEEE
Confidence 999999 8876544 379999999876654 4555666 5555 45554
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-06 Score=71.46 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=78.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~Gd 102 (218)
.+.|...+++...+...+.++||||||++|. .++.++.. +.+ ++.++.++.....++. +...+..++++.++
T Consensus 31 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~--~~~~l~~~----~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~ 103 (233)
T PRK05134 31 RINPLRLNYIREHAGGLFGKRVLDVGCGGGI--LSESMARL----GAD-VTGIDASEENIEVARLHALESGLKIDYRQTT 103 (233)
T ss_pred HhhHHHHHHHHHhccCCCCCeEEEeCCCCCH--HHHHHHHc----CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecC
Confidence 4556667777777777788999999999998 55555542 356 6666888877666554 44666678888898
Q ss_pred CCchhhcCCC-CCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 103 ADDEELMDGL-VDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 103 A~~~e~L~~l-~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
+ .+....- ++||+|+....- .+....++.+ +++++||.+++..
T Consensus 104 ~--~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 104 A--EELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred H--HHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEe
Confidence 8 7665333 489999875321 2345566776 5555588877653
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.4e-06 Score=74.57 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.+.|..+..+..++....-.+|||+|||+|. .++-. +.. +.+ ++..|.++++...++ +++.+|+. ++++.+
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~--~liea--a~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~ 237 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGG--FLIEA--GLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRG 237 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCH--HHHHH--HHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEec
Confidence 5677788888777777677799999999998 44332 222 456 556688888776665 55688888 899999
Q ss_pred CCCchhhcCCC-CCccEEEEeCC-------c-----cCcHHHHHHh-cCCCCCeEEEE
Q 027826 102 EADDEELMDGL-VDIDFLVVDSR-------R-----KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 102 dA~~~e~L~~l-~~fDfVFIDa~-------K-----~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
|+ .+ ++.- .+||.|+.|.. + ..|.++++.+ +++++||.+++
T Consensus 238 D~--~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DA--TK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ch--hc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 99 66 3332 38999999832 1 2267788877 55556886654
|
This family is found exclusively in the Archaea. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=67.94 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHh----cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc-eEEE
Q 027826 26 ESGVAELVSAMAAG----WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVI 99 (218)
Q Consensus 26 ~p~~g~fL~~L~~~----~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~-i~~i 99 (218)
.+...+++...+.. .+..+|||+||++|+ .+..++.. +.+ ++.++.++.....++. +...++. +++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~--~~~~l~~~----~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~ 98 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGL--LSEPLARL----GAN-VTGIDASEENIEVAKLHAKKDPLLKIEYR 98 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCH--HHHHHHhc----CCe-EEEEeCCHHHHHHHHHHHHHcCCCceEEE
Confidence 45566777777764 458899999999999 66555542 345 5566777777665554 4566774 8999
Q ss_pred EcCCCchhhcCCC-CCccEEEEeC---CccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 100 TGEADDEELMDGL-VDIDFLVVDS---RRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 100 ~GdA~~~e~L~~l-~~fDfVFIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+++ .+..... .+||+|+... ...+...+++.+ .++++||.+++..
T Consensus 99 ~~d~--~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 99 CTSV--EDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred eCCH--HHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999 8776554 4899999863 234566777777 5556688777643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.7e-06 Score=71.96 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
....++.|..++...++.+|||+|||+|. .+..|+. .+.+ ++.++.++++.+.++.... .++++.+|+
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~-v~~~D~s~~~l~~a~~~~~---~~~~~~~d~-- 94 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGW--MSRYWRE----RGSQ-VTALDLSPPMLAQARQKDA---ADHYLAGDI-- 94 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCH--HHHHHHH----cCCe-EEEEECCHHHHHHHHhhCC---CCCEEEcCc--
Confidence 34555555554455567899999999998 4444443 2456 6667888877666553321 257888998
Q ss_pred hhhcCCC-CCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 106 EELMDGL-VDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l-~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+ ++-- .+||+|+....- .+....+..+ +++++||.+++-.
T Consensus 95 ~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 95 ES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred cc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 55 3322 389999976532 3445666666 6666699998753
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.4e-06 Score=63.80 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=61.7
Q ss_pred EEEeCcCcchHHHHHHHHHhcCC-CCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-CCccEEEE-
Q 027826 45 IVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-VDIDFLVV- 120 (218)
Q Consensus 45 ILEiGt~~GyiGsaiglA~a~~~-~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~~fDfVFI- 120 (218)
|||+|||+|- .+..++...+. +..+ ++-++.++++...++.. .+.+..++++++|+ .+ ++.. .+||+|+.
T Consensus 1 ILDlgcG~G~--~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~--~~-l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGR--VTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADA--RD-LPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSH--HHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCT--TC-HHHHSSSEEEEEE-
T ss_pred CEEeecCCcH--HHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCH--hH-CcccCCCeeEEEEc
Confidence 7999999998 77777776621 1246 66778889887766554 56777899999999 77 3433 49999999
Q ss_pred eC-----CccCcHHHHHHh-cCCCCCe
Q 027826 121 DS-----RRKDFARVLRLA-NLSSRGA 141 (218)
Q Consensus 121 Da-----~K~~Y~~~~~~~-~L~~~Gg 141 (218)
-. ++++-..+|+.+ ++++|||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 44 234556677776 6666576
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.6e-06 Score=72.73 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=77.1
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h-hC-C-C-c-eEEEEcC
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G-EA-G-F-S-PQVITGE 102 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~-~a-g-l-~-i~~i~Gd 102 (218)
..++.+++. -+||+||.||.|.|- ++ -..+... --+ ++.+|.++...+.++.+ - -+ + . + ++++.+|
T Consensus 66 l~h~~~~ah-~~pk~VLiiGgGdG~--tl---Revlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D 138 (282)
T COG0421 66 LAHVPLLAH-PNPKRVLIIGGGDGG--TL---REVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD 138 (282)
T ss_pred HHhchhhhC-CCCCeEEEECCCccH--HH---HHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence 333334333 355899999999886 33 2222221 235 78889999988877654 2 12 1 1 2 8999999
Q ss_pred CCchhhcCCCC-CccEEEEeCCcc-Cc------HHHHHHh-cCCCCCeEEEEeC
Q 027826 103 ADDEELMDGLV-DIDFLVVDSRRK-DF------ARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 103 A~~~e~L~~l~-~fDfVFIDa~K~-~Y------~~~~~~~-~L~~~GgvIV~DN 147 (218)
+ .+.+++.. +||+|++|+.-. .. .++|+.| +.++++||+|+-+
T Consensus 139 g--~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 139 G--VEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred H--HHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 9 99999887 799999999744 33 7899999 6666699999874
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.3e-06 Score=76.15 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=68.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC--ceEEEEcCCCchhhcCCCCCccE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF--SPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl--~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
...+|||||||+|+ .+..||. .+++ |+-+|.++++.+.++... ..++ .|+++++++ .+.-..-.+||+
T Consensus 131 ~g~~ILDIGCG~G~--~s~~La~----~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da--e~l~~~~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGL--LSEPLAR----MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA--EKLADEGRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCH--HHHHHHH----cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH--HHhhhccCCCCE
Confidence 34689999999999 5655553 2567 777788888887776543 3344 289999999 664222238999
Q ss_pred EEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 118 LVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 118 VFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+.=.-- .+...+++.+ +++++||.+++...
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 9964321 2445677777 66666999998754
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=71.73 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=62.9
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhh--cCC-CCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEEL--MDG-LVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~--L~~-l~~fDfV 118 (218)
-.+||++||++|+ ++..+|..+.+ .|+ |+.+|.++++.+......+.--.|.++.+|+ ..- ++. ++.||+|
T Consensus 133 G~~VLDLGaG~G~--~t~~lAdiVG~-~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da--~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 133 GSKVLYLGAASGT--TVSHVSDLVGP-EGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDA--RYPQKYRMLVPMVDVI 206 (293)
T ss_pred CCEEEEeCCcCCH--HHHHHHHHhCC-CCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCc--cChhhhhcccCCCCEE
Confidence 3589999999999 88889987754 578 6666777643221111111111278899999 542 221 2489999
Q ss_pred EEeCCccC-cHHHHHHh-cCCCCCeEEEEe
Q 027826 119 VVDSRRKD-FARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 119 FIDa~K~~-Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.|..-.+ +..+...+ .++++||.+++.
T Consensus 207 ~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 99997433 33333344 566668988883
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.2e-05 Score=74.01 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=78.2
Q ss_pred CCHHHHH-HHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEE
Q 027826 25 HESGVAE-LVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQV 98 (218)
Q Consensus 25 i~p~~g~-fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~ 98 (218)
+.+.+.+ ++..++... ...+|||+|||+|. .++.||.. ..+ ++.+|.++++.+.++.+ ...|+. +++
T Consensus 277 ~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~--~sl~la~~----~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~ 349 (443)
T PRK13168 277 VNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGN--FTLPLARQ----AAE-VVGVEGVEAMVERARENARRNGLDNVTF 349 (443)
T ss_pred cCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCH--HHHHHHHh----CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEE
Confidence 4455444 333333332 34799999999999 66667654 246 66678889887777655 467877 999
Q ss_pred EEcCCCchhhcCCC----CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 99 ITGEADDEELMDGL----VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 99 i~GdA~~~e~L~~l----~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.||+ .+.++.+ .+||+|++|-....-.+.++.+ ++.+ +++|.+
T Consensus 350 ~~~d~--~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~~-~~ivyv 398 (443)
T PRK13168 350 YHANL--EEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALAKLGP-KRIVYV 398 (443)
T ss_pred EEeCh--HHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHHhcCC-CeEEEE
Confidence 99999 8877542 2799999998877677788777 7666 555443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.2e-06 Score=59.52 Aligned_cols=89 Identities=21% Similarity=0.174 Sum_probs=59.6
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhhcCCC-CCccEEEEeCC
Q 027826 46 VETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGL-VDIDFLVVDSR 123 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~L~~l-~~fDfVFIDa~ 123 (218)
||+||++|. ++..|+.. .+.+ ++.++.++++.+.++.. ...+ ++++.+|+ .+. +-- ++||+|+.-.-
T Consensus 1 LdiG~G~G~--~~~~l~~~---~~~~-v~~~D~~~~~~~~~~~~~~~~~--~~~~~~d~--~~l-~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGR--FAAALAKR---GGAS-VTGIDISEEMLEQARKRLKNEG--VSFRQGDA--EDL-PFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSH--HHHHHHHT---TTCE-EEEEES-HHHHHHHHHHTTTST--EEEEESBT--TSS-SS-TT-EEEEEEESH
T ss_pred CEecCcCCH--HHHHHHhc---cCCE-EEEEeCCHHHHHHHHhcccccC--chheeehH--HhC-ccccccccccccccc
Confidence 799999999 77777775 2567 66667878766655543 3333 56999999 654 432 39999998764
Q ss_pred c---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 124 R---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 124 K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
- ++..++++.+ +++++||.+++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 3 4556677777 77777999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.8e-05 Score=71.83 Aligned_cols=155 Identities=13% Similarity=0.155 Sum_probs=90.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCC--CceEEEEcCCCchhhcCCCCCcc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAG--FSPQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~ag--l~i~~i~GdA~~~e~L~~l~~fD 116 (218)
...++|||||||+|| .++.|+..- ..+ |+-++.++.+...++... ..+ ..|+++.+++ .+ ++.-.+||
T Consensus 121 l~g~~VLDIGCG~G~--~~~~la~~g---~~~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~--e~-lp~~~~FD 191 (322)
T PRK15068 121 LKGRTVLDVGCGNGY--HMWRMLGAG---AKL-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI--EQ-LPALKAFD 191 (322)
T ss_pred CCCCEEEEeccCCcH--HHHHHHHcC---CCE-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH--HH-CCCcCCcC
Confidence 456899999999999 777777642 235 555666665443333222 222 2389999988 54 44434899
Q ss_pred EEEEeCC---ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccch------hhhhhhccCCCCCeEEEEee---------c
Q 027826 117 FLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTF------RWKNVLDGRSRRLVRSVYLP---------V 177 (218)
Q Consensus 117 fVFIDa~---K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~------~~~~~~~~~~~~~~~s~~lP---------i 177 (218)
+||.=+. ..+...+++.+ +.+++||.+|++.....+.... +|.. .+ + ..++| .
T Consensus 192 ~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~-~~-----~--~~~lps~~~l~~~L~ 263 (322)
T PRK15068 192 TVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK-MR-----N--VYFIPSVPALKNWLE 263 (322)
T ss_pred EEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc-Cc-----c--ceeCCCHHHHHHHHH
Confidence 9997332 23456677777 5566699999987766654211 1111 00 0 01122 3
Q ss_pred CCcEEEEEEeecCCccCCCCCCCCceEeccccccccc
Q 027826 178 GKGLDIAHVATSGAVSSSAKGGSRWIKHFDRQSGEEH 214 (218)
Q Consensus 178 GDGl~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (218)
.-|+...+.......+....|+..|+ +.+|.+++
T Consensus 264 ~aGF~~i~~~~~~~t~~~eqr~t~w~---~~~sl~~f 297 (322)
T PRK15068 264 RAGFKDVRIVDVSVTTTEEQRKTEWM---TTESLADF 297 (322)
T ss_pred HcCCceEEEEeCCCCCccccccccCc---ccCcHhhc
Confidence 45666666554444456666888998 34454443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.1e-05 Score=74.12 Aligned_cols=111 Identities=9% Similarity=-0.000 Sum_probs=72.6
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCchhh
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDEEL 108 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~~e~ 108 (218)
..++..+ ......+|||||||+|. .++.||... +.+ ++.++.++++...++... ..+..++++.+|+ .+.
T Consensus 256 e~l~~~~-~~~~~~~vLDiGcG~G~--~~~~la~~~---~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~--~~~ 326 (475)
T PLN02336 256 KEFVDKL-DLKPGQKVLDVGCGIGG--GDFYMAENF---DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADC--TKK 326 (475)
T ss_pred HHHHHhc-CCCCCCEEEEEeccCCH--HHHHHHHhc---CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCc--ccC
Confidence 3444443 23456799999999999 666677643 456 666778887776665443 2233389999999 653
Q ss_pred cCCCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 109 MDGLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 109 L~~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.-.-++||+|+.-..- .+...+++.+ +++++||.+++....
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 2111379999985432 2456677777 666669998876543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.1e-06 Score=72.36 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEE
Q 027826 27 SGVAELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVIT 100 (218)
Q Consensus 27 p~~g~fL~~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~ 100 (218)
..+.+-+..++. +..-.+|||||||.|- .++.+|+.. |.+ |+.+..+++..+.++ ...++|++ ++++.
T Consensus 45 ~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~--~~~~~a~~~---g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~ 118 (273)
T PF02353_consen 45 EAQERKLDLLCEKLGLKPGDRVLDIGCGWGG--LAIYAAERY---GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRL 118 (273)
T ss_dssp HHHHHHHHHHHTTTT--TT-EEEEES-TTSH--HHHHHHHHH-----E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHc---CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence 344444555554 4455699999999998 787777753 456 777788888777765 45689998 99999
Q ss_pred cCCCchhhcCCCCCccEEE-EeCC----ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDGLVDIDFLV-VDSR----RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVF-IDa~----K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|. .+.-+ +||-|+ |.+- +++|+.||+.+ .+++|||.++..-+....
T Consensus 119 ~D~--~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 119 QDY--RDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp S-G--GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred eec--cccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999 66333 888754 4433 36899999999 666669999988766544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.6e-06 Score=71.35 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=69.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchhhcCCC
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEELMDGL 112 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e~L~~l 112 (218)
.+|++||-||.|.|. ++=.+. ... -.+ |+.+|.++...+.++.+ . ..++. ++++.+|| .+.|.+.
T Consensus 75 ~~p~~VLiiGgG~G~--~~~ell---~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg--~~~l~~~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGG--TARELL---KHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG--RKFLKET 146 (246)
T ss_dssp SST-EEEEEESTTSH--HHHHHT---TSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH--HHHHHTS
T ss_pred CCcCceEEEcCCChh--hhhhhh---hcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh--HHHHHhc
Confidence 379999999999887 432222 222 245 88899999988877655 2 23333 99999999 9999886
Q ss_pred C--CccEEEEeCCccC-------cHHHHHHh-cCCCCCeEEEEeC
Q 027826 113 V--DIDFLVVDSRRKD-------FARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 113 ~--~fDfVFIDa~K~~-------Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
. .||+|++|+.-.. -.++|+.+ +.+++||+++.--
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 4 6999999987522 25788888 4444599998753
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-05 Score=67.29 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEc
Q 027826 27 SGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITG 101 (218)
Q Consensus 27 p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~G 101 (218)
+++..++....... ++.+|||+|||+|. -++.++...+ +.+ ++.+|.++...+.++.+ ...| ++++.|
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~--i~l~la~~~~--~~~-v~~vDis~~al~~A~~N~~~~~--~~~~~~ 140 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGA--VGAALAAALD--GIE-LHAADIDPAAVRCARRNLADAG--GTVHEG 140 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcC--CEEEEe
Confidence 44444444444332 24589999999999 5555666543 346 66678988887777655 4555 488999
Q ss_pred CCCchhhcCC-C-CCccEEEEeC
Q 027826 102 EADDEELMDG-L-VDIDFLVVDS 122 (218)
Q Consensus 102 dA~~~e~L~~-l-~~fDfVFIDa 122 (218)
|. .+.++. + ++||+|+.|.
T Consensus 141 D~--~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 141 DL--YDALPTALRGRVDILAANA 161 (251)
T ss_pred ec--hhhcchhcCCCEeEEEECC
Confidence 99 877654 3 3799999985
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.2e-05 Score=72.88 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcC
Q 027826 25 HESGVAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~Gd 102 (218)
-.|++..++..+.... ...+|||+|||+|. -++.++...+ +.+ ++.+|.++++.+.++.+ .+.+..++++.||
T Consensus 234 PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~--IaiaLA~~~p--~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD 308 (423)
T PRK14966 234 PRPETEHLVEAVLARLPENGRVWDLGTGSGA--VAVTVALERP--DAF-VRASDISPPALETARKNAADLGARVEFAHGS 308 (423)
T ss_pred CCccHHHHHHHhhhccCCCCEEEEEeChhhH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 3567777777776543 45699999999999 5555665433 467 66678888887777655 4667679999999
Q ss_pred CCchhh-cCCCCCccEEEEeC
Q 027826 103 ADDEEL-MDGLVDIDFLVVDS 122 (218)
Q Consensus 103 A~~~e~-L~~l~~fDfVFIDa 122 (218)
. .+. ++.-.+||+|+.+-
T Consensus 309 l--~e~~l~~~~~FDLIVSNP 327 (423)
T PRK14966 309 W--FDTDMPSEGKWDIIVSNP 327 (423)
T ss_pred h--hccccccCCCccEEEECC
Confidence 9 664 22223799999864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=3e-05 Score=72.06 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 27 SGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
..+..-+..+++.. ...+|||||||+|. .++.+|... +.+ |+.++.++++.+.++... .++.+++..+|.
T Consensus 150 ~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~--~a~~la~~~---g~~-V~giDlS~~~l~~A~~~~-~~l~v~~~~~D~ 222 (383)
T PRK11705 150 EAQEAKLDLICRKLQLKPGMRVLDIGCGWGG--LARYAAEHY---GVS-VVGVTISAEQQKLAQERC-AGLPVEIRLQDY 222 (383)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCCccH--HHHHHHHHC---CCE-EEEEeCCHHHHHHHHHHh-ccCeEEEEECch
Confidence 33444455555543 45699999999998 666666542 457 666788888877766443 355588888998
Q ss_pred CchhhcCCCCCccEEEEe----C-CccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 104 DDEELMDGLVDIDFLVVD----S-RRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFID----a-~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.+. + ++||.|+.= . ...+|..+|+.+ ++++|||.++.-.+
T Consensus 223 --~~l-~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 223 --RDL-N--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred --hhc-C--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 654 2 489998632 2 245678899998 66667999888654
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-05 Score=61.61 Aligned_cols=99 Identities=17% Similarity=0.046 Sum_probs=64.6
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
....+|||||||+|. .+..++.. +++ ++.+|.++.+.+.++..... .. ++++.+|+ .+....-..||.|
T Consensus 12 ~~~~~vLEiG~G~G~--lt~~l~~~----~~~-v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~--~~~~~~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGA--LTEELLER----AAR-VTAIEIDPRLAPRLREKFAA-ADNLTVIHGDA--LKFDLPKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccH--HHHHHHhc----CCe-EEEEECCHHHHHHHHHHhcc-CCCEEEEECch--hcCCccccCCCEE
Confidence 344689999999999 55555543 457 77788988877666544322 33 89999999 7753222269999
Q ss_pred EEeCCccCcHHHHHHh---cCCCCCeEEEEeCC
Q 027826 119 VVDSRRKDFARVLRLA---NLSSRGAVLVCKNA 148 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~---~L~~~GgvIV~DNv 148 (218)
|.+---....+.+..+ .....+|++++-.-
T Consensus 82 i~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 82 VGNLPYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EECCCcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 9886533334555554 22234788776554
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-05 Score=75.60 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchhh
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEEL 108 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e~ 108 (218)
..+...+....+..+|||||||+|. .+..+|...+ +++ ++.++.++.+.+.++.. ...+..++++.||+ .+
T Consensus 407 ~~~k~~i~d~~~g~rVLDIGCGTG~--ls~~LA~~~P--~~k-VtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa--~d- 478 (677)
T PRK06922 407 ADDKRIILDYIKGDTIVDVGAGGGV--MLDMIEEETE--DKR-IYGIDISENVIDTLKKKKQNEGRSWNVIKGDA--IN- 478 (677)
T ss_pred HHHHHHHhhhcCCCEEEEeCCCCCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHhhhcCCCeEEEEcch--Hh-
Confidence 3445556667788999999999998 6666776643 578 66678888877666543 34555688999999 76
Q ss_pred cCC-CC--CccEEEEeCC----------------ccCcHHHHHHh-cCCCCCeEEEE-eCCCC
Q 027826 109 MDG-LV--DIDFLVVDSR----------------RKDFARVLRLA-NLSSRGAVLVC-KNAYS 150 (218)
Q Consensus 109 L~~-l~--~fDfVFIDa~----------------K~~Y~~~~~~~-~L~~~GgvIV~-DNvl~ 150 (218)
++. ++ +||+|+.-.- .+...+.++.+ +++++||.+++ |.++.
T Consensus 479 Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 479 LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 443 33 8999985421 12345666666 55555666655 66554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.8e-05 Score=68.37 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=60.9
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC-CCccEEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDIDFLV 119 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l-~~fDfVF 119 (218)
+..+|||||||+|+ .+..|+...+..++..++-++.++++...|+.. . -.++++.+|+ .+ +|-- .+||+|+
T Consensus 85 ~~~~vLDiGcG~G~--~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--~-~~~~~~~~d~--~~-lp~~~~sfD~I~ 156 (272)
T PRK11088 85 KATALLDIGCGEGY--YTHALADALPEITTMQLFGLDISKVAIKYAAKR--Y-PQVTFCVASS--HR-LPFADQSLDAII 156 (272)
T ss_pred CCCeEEEECCcCCH--HHHHHHHhcccccCCeEEEECCCHHHHHHHHHh--C-CCCeEEEeec--cc-CCCcCCceeEEE
Confidence 45789999999999 777788776543332266678888766555321 1 1278899998 65 3422 3899998
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.--.+.. ++.+ +++++||.+++
T Consensus 157 ~~~~~~~----~~e~~rvLkpgG~li~ 179 (272)
T PRK11088 157 RIYAPCK----AEELARVVKPGGIVIT 179 (272)
T ss_pred EecCCCC----HHHHHhhccCCCEEEE
Confidence 6443333 3444 55556888876
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.6e-05 Score=66.07 Aligned_cols=94 Identities=17% Similarity=0.052 Sum_probs=63.2
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCC----------------CceEEEEcCCC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAG----------------FSPQVITGEAD 104 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~ag----------------l~i~~i~GdA~ 104 (218)
...+||++|||.|. -+++||. .|.-|+-+|..+...+.+ .+++| ..|+++++|.
T Consensus 34 ~~~rvLd~GCG~G~--da~~LA~-----~G~~V~gvD~S~~Ai~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~- 103 (213)
T TIGR03840 34 AGARVFVPLCGKSL--DLAWLAE-----QGHRVLGVELSEIAVEQF--FAENGLTPTVTQQGEFTRYRAGNIEIFCGDF- 103 (213)
T ss_pred CCCeEEEeCCCchh--HHHHHHh-----CCCeEEEEeCCHHHHHHH--HHHcCCCcceeccccceeeecCceEEEEccC-
Confidence 44699999999999 9988985 244488888988655432 22332 2388899999
Q ss_pred chhhcCC-CCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 105 DEELMDG-LVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 105 ~~e~L~~-l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+.-+. .++||+||=- -.++.-.+|++.+ .++++||.++.
T Consensus 104 -~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 104 -FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 764433 2467777522 2345667788888 77777986443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=9e-05 Score=68.02 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA 103 (218)
+++.+..+|..|-. ....+|||+|||+|+ .++.++...+ +.+ ++.+|.++.+...++. +.+.++..+++.+|.
T Consensus 181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~--ls~~la~~~p--~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~ 254 (342)
T PRK09489 181 LDVGSQLLLSTLTP-HTKGKVLDVGCGAGV--LSAVLARHSP--KIR-LTLSDVSAAALESSRATLAANGLEGEVFASNV 254 (342)
T ss_pred CCHHHHHHHHhccc-cCCCeEEEeccCcCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEccc
Confidence 44555555665543 334589999999999 5655666433 457 6667888877776654 567777778888888
Q ss_pred CchhhcCCCCCccEEEEeCCc--------cCcHHHHHHh-c-CCCCCeEEEEeCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRR--------KDFARVLRLA-N-LSSRGAVLVCKNAY 149 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K--------~~Y~~~~~~~-~-L~~~GgvIV~DNvl 149 (218)
.+.++ ++||+|+.+--- ....+++..+ + |.|.|-++++-|-+
T Consensus 255 --~~~~~--~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 255 --FSDIK--GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred --ccccC--CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 55332 389999986421 2235566665 4 55534455566654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.3e-05 Score=70.57 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCC---c-eEEE
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGF---S-PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl---~-i~~i 99 (218)
++..+--||..|-. ....+|||+|||+|+ .++.++...+ +.+ |+-+|.++.+.+.++.+ ...+. . ++++
T Consensus 213 LD~GtrllL~~lp~-~~~~~VLDLGCGtGv--i~i~la~~~P--~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~ 286 (378)
T PRK15001 213 LDIGARFFMQHLPE-NLEGEIVDLGCGNGV--IGLTLLDKNP--QAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFM 286 (378)
T ss_pred cChHHHHHHHhCCc-ccCCeEEEEeccccH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEE
Confidence 44444445554433 223699999999999 5555666543 467 55567777777776644 33332 2 8999
Q ss_pred EcCCCchhhcCCCCCccEEEEeCCcc--------CcHHHHHHh-cCCCCCeEE-EEeCC
Q 027826 100 TGEADDEELMDGLVDIDFLVVDSRRK--------DFARVLRLA-NLSSRGAVL-VCKNA 148 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa~K~--------~Y~~~~~~~-~L~~~GgvI-V~DNv 148 (218)
.+|+ .+.++. .+||+|+.+-.-+ .-.++|..+ +.+++||.+ ++-|-
T Consensus 287 ~~D~--l~~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr 342 (378)
T PRK15001 287 INNA--LSGVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 342 (378)
T ss_pred Eccc--cccCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEec
Confidence 9999 654432 3799999963211 112455555 444446654 44443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.8e-05 Score=63.79 Aligned_cols=109 Identities=14% Similarity=0.150 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCC--CCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCCCchh
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRH--TGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~--~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA~~~e 107 (218)
+.+..++...++.+|||||||+|. .+..|+..++. .+.+ ++-++.++++.+.++.. ...+ ++++.+++ .+
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~--~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~--~~ 122 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGD--LAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPG--VTFRQAVS--DE 122 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCH--HHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCC--CeEEEEec--cc
Confidence 444444444677899999999999 66667765432 1346 67778888887766543 2334 45555555 22
Q ss_pred hcCCC-CCccEEEEeCCccCc-----HHHHHHh-cCCCCCeEEEEeCCC
Q 027826 108 LMDGL-VDIDFLVVDSRRKDF-----ARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 108 ~L~~l-~~fDfVFIDa~K~~Y-----~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
++.- ++||+|+.-.--++. ...+..+ ++++ |++ ++.+..
T Consensus 123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~-~i~dl~ 168 (232)
T PRK06202 123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLV-LHNDLI 168 (232)
T ss_pred -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeE-EEeccc
Confidence 2322 389999987433322 3456565 6666 544 444443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.4e-05 Score=72.02 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHhcC-CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEEcCC
Q 027826 26 ESGVAELVSAMAAGWD-ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEA 103 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~-ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~GdA 103 (218)
-|.+.--|.+|-+... -++||++|||+|. -+ +|.+.. |.+.|+.++.+|.....++.+ ...|++.++.....
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGI--La--iaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~ 218 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGI--LA--IAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS 218 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSH--HH--HHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHH--HH--HHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe
Confidence 3566677777777765 4799999999998 33 444433 333366778999877777655 56777733322223
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
.+... .+||+|+-.--.+--......+ .++++||.+|.-=++-
T Consensus 219 --~~~~~--~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 219 --EDLVE--GKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp --SCTCC--S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred --ccccc--ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 23232 6999999766555445555554 4455599998755543
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=61.87 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=66.0
Q ss_pred HHHHHHHH--hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCc
Q 027826 31 ELVSAMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADD 105 (218)
Q Consensus 31 ~fL~~L~~--~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~ 105 (218)
.++..+.. .....+|||||||+|+ .+..|+.. +.+ ++.++.++.+.+.++. +...++. ++++.+|.
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~--~~~~l~~~----~~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGS--LSIPLARR----GAK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDL-- 121 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCH--HHHHHHHc----CCE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence 44555544 4567899999999999 77666643 356 6777888888777654 4567773 88998886
Q ss_pred hhhcCCCCCccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEEE
Q 027826 106 EELMDGLVDIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.. . .++||+|+.-..- ......++.+ .+.+ |++++.
T Consensus 122 ~~-~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~ 163 (230)
T PRK07580 122 ES-L--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFT 163 (230)
T ss_pred hh-c--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEE
Confidence 32 1 2489999875332 2333455555 5555 555444
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.2e-05 Score=67.07 Aligned_cols=115 Identities=16% Similarity=-0.004 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHH----hc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhh--CCCceEE
Q 027826 27 SGVAELVSAMAA----GW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGE--AGFSPQV 98 (218)
Q Consensus 27 p~~g~fL~~L~~----~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~--agl~i~~ 98 (218)
+...++|...++ .. ...+|||+|||+|. -+..|+.+++. +.+ ++.++.++++.+.+ +.+.. -++.|+.
T Consensus 44 r~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~--~t~~Ll~~l~~-~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~ 119 (301)
T TIGR03438 44 RTEAAILERHADEIAAATGAGCELVELGSGSSR--KTRLLLDALRQ-PAR-YVPIDISADALKESAAALAADYPQLEVHG 119 (301)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCeEEecCCCcch--hHHHHHHhhcc-CCe-EEEEECCHHHHHHHHHHHHhhCCCceEEE
Confidence 444455554433 22 45899999999999 78788888753 456 67788988876554 44543 2345888
Q ss_pred EEcCCCchhhcCCCC-----CccEEEEeCCccC-----cHHHHHHh-cCCCCCeEEEEeC
Q 027826 99 ITGEADDEELMDGLV-----DIDFLVVDSRRKD-----FARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-----~fDfVFIDa~K~~-----Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++||. .+.++-.. ...++|.+..-.+ -..+|+.+ ..+++||.++++=
T Consensus 120 i~gD~--~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 120 ICADF--TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EEEcc--cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99999 65443222 3456777764333 33466666 5555588877543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=65.67 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=61.8
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcC----CC--
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMD----GL-- 112 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~----~l-- 112 (218)
....+||||||++|. .+..++....+ .|+ |+.+|.++ + .++. +++++||+...++++ .+
T Consensus 50 ~~~~~VLDlG~GtG~--~t~~l~~~~~~-~~~-V~aVDi~~-~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGG--WSQYAVTQIGD-KGR-VIACDILP-M---------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCH--HHHHHHHHcCC-Cce-EEEEeccc-c---------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 455689999999998 66667765533 567 55566665 1 1122 899999993322232 23
Q ss_pred CCccEEEEeCCcc-------Cc-------HHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 113 VDIDFLVVDSRRK-------DF-------ARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 113 ~~fDfVFIDa~K~-------~Y-------~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.+||+|+.|.... +. .+.++.+ +++++||.+++- .|.+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~--~~~~ 168 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK--VFQG 168 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE--EecC
Confidence 3899999997431 11 2345555 666669999885 3544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00011 Score=67.97 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHH-HHHh---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eE
Q 027826 24 SHESGVAELVSA-MAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~-L~~~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~ 97 (218)
+..+.+.+-|.. +... ...++|||+|||+|. -++.+|. . +.+ |+.+|.++...+.++.+ ...|+. ++
T Consensus 212 Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~--~~l~la~--~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~ 284 (374)
T TIGR02085 212 QTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGG--FGLHCAG--P--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLS 284 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccH--HHHHHhh--c--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEE
Confidence 445555555533 3332 356899999999998 4444442 2 346 66678888877766654 577886 99
Q ss_pred EEEcCCCchhhcCCC-CCccEEEEeCCcc-CcHHHHHHh-cCCCCCeEEEEeC
Q 027826 98 VITGEADDEELMDGL-VDIDFLVVDSRRK-DFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l-~~fDfVFIDa~K~-~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
++.+|+ .+.++.. .+||+||+|-... ...+.++.+ .+.|++=|.|.-|
T Consensus 285 ~~~~d~--~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~ 335 (374)
T TIGR02085 285 FAALDS--AKFATAQMSAPELVLVNPPRRGIGKELCDYLSQMAPKFILYSSCN 335 (374)
T ss_pred EEECCH--HHHHHhcCCCCCEEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeC
Confidence 999999 8877654 4799999998754 456677777 6666344444444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=71.35 Aligned_cols=103 Identities=9% Similarity=0.093 Sum_probs=66.4
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhh-cCCC-CC
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEEL-MDGL-VD 114 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~-L~~l-~~ 114 (218)
...+.++|||||||+|. .+..|+.. .++ ++.++.++++.+.++.... ... ++++.+|+ .+. ++-- ++
T Consensus 34 ~~~~~~~vLDlGcG~G~--~~~~la~~----~~~-v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~--~~~~~~~~~~~ 103 (475)
T PLN02336 34 PPYEGKSVLELGAGIGR--FTGELAKK----AGQ-VIALDFIESVIKKNESING-HYKNVKFMCADV--TSPDLNISDGS 103 (475)
T ss_pred CccCCCEEEEeCCCcCH--HHHHHHhh----CCE-EEEEeCCHHHHHHHHHHhc-cCCceEEEEecc--cccccCCCCCC
Confidence 33456799999999999 67667753 346 6667888877655443222 123 89999999 642 3322 38
Q ss_pred ccEEEEeCCccC-----cHHHHHHh-cCCCCCeEEEE-eCCCC
Q 027826 115 IDFLVVDSRRKD-----FARVLRLA-NLSSRGAVLVC-KNAYS 150 (218)
Q Consensus 115 fDfVFIDa~K~~-----Y~~~~~~~-~L~~~GgvIV~-DNvl~ 150 (218)
||+|+....-.. ..+.++.+ +++++||.+++ ||++.
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 999998763221 24566666 55566887766 65543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.1e-05 Score=66.11 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=74.6
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC-ceEEEEcCCCchhhcCCC
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF-SPQVITGEADDEELMDGL 112 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl-~i~~i~GdA~~~e~L~~l 112 (218)
+.+....++..+||||||.|= ..+.||...|+. -.|-++...+-...+.+...++|+ .++++.+|| .++|+.+
T Consensus 41 ~~~f~~~~~pi~lEIGfG~G~--~l~~~A~~nP~~--nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA--~~~l~~~ 114 (227)
T COG0220 41 SALFGNNNAPIVLEIGFGMGE--FLVEMAKKNPEK--NFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA--VEVLDYL 114 (227)
T ss_pred HHHhCCCCCcEEEEECCCCCH--HHHHHHHHCCCC--CEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHhc
Confidence 334444445789999999998 888899987764 335555454444555566679999 599999999 9999876
Q ss_pred C---C---ccEEEEeCCc--c------CcHHHHHHh-cCCCCCeEEE
Q 027826 113 V---D---IDFLVVDSRR--K------DFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 113 ~---~---fDfVFIDa~K--~------~Y~~~~~~~-~L~~~GgvIV 144 (218)
. + +.+-|=|-|. . -|+.+++.+ +.+++||+|-
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 2 4 4555557762 2 378899998 5555588874
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-05 Score=64.02 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC----------------ceEEEEcCCCc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF----------------SPQVITGEADD 105 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl----------------~i~~i~GdA~~ 105 (218)
..+||++|||.|. .+++||. .|.-|+-+|.++...+.+ ..+.++ .|++..+|.
T Consensus 38 ~~rvL~~gCG~G~--da~~LA~-----~G~~V~avD~s~~Ai~~~--~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-- 106 (218)
T PRK13255 38 GSRVLVPLCGKSL--DMLWLAE-----QGHEVLGVELSELAVEQF--FAENGLTPQTRQSGEFEHYQAGEITIYCGDF-- 106 (218)
T ss_pred CCeEEEeCCCChH--hHHHHHh-----CCCeEEEEccCHHHHHHH--HHHcCCCccccccccccccccCceEEEECcc--
Confidence 4699999999999 9999985 244477788888644432 222222 288899999
Q ss_pred hhhcCC-CCCccEEE-----EeCCccCcHHHHHHh-cCCCCCeE
Q 027826 106 EELMDG-LVDIDFLV-----VDSRRKDFARVLRLA-NLSSRGAV 142 (218)
Q Consensus 106 ~e~L~~-l~~fDfVF-----IDa~K~~Y~~~~~~~-~L~~~Ggv 142 (218)
.+.-+. +..||+|| +=-.++.-.+|++.+ .++++||+
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 776443 34789888 444566778899998 77766874
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.3e-05 Score=61.71 Aligned_cols=98 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhc----
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELM---- 109 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L---- 109 (218)
.+.....-++|||+|||+|. .+..++..... .++ |+.+|.++.+ ... ++++.+|+...+.+
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~--~~~~l~~~~~~-~~~-v~~vDis~~~----------~~~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGG--WSQVAVEQVGG-KGR-VIAVDLQPMK----------PIENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred HhcccCCCCEEEEecCCCCH--HHHHHHHHhCC-Cce-EEEEeccccc----------cCCCceEEEeeCCChhHHHHHH
Confidence 33344566899999999998 55555554432 467 6666777743 122 78888888211211
Q ss_pred CCC--CCccEEEEeCCcc-------Cc-------HHHHHHh-cCCCCCeEEEEe
Q 027826 110 DGL--VDIDFLVVDSRRK-------DF-------ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 110 ~~l--~~fDfVFIDa~K~-------~Y-------~~~~~~~-~L~~~GgvIV~D 146 (218)
+.+ ++||+||.|+... ++ ...++.+ +++++||.+++-
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 122 2799999997421 11 3456665 565668988874
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00019 Score=65.26 Aligned_cols=120 Identities=10% Similarity=-0.065 Sum_probs=72.1
Q ss_pred CCCHHHHHHHH--HHHH---hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC--c
Q 027826 24 SHESGVAELVS--AMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF--S 95 (218)
Q Consensus 24 ~i~p~~g~fL~--~L~~---~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl--~ 95 (218)
.++++-..-+. .++. ....++|||||||+|| .++.|+.. . ... ++-++.++.+...++..+ ..+. .
T Consensus 99 ~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~--~~~~~~~~--g-~~~-v~GiDpS~~ml~q~~~~~~~~~~~~~ 172 (314)
T TIGR00452 99 KIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGY--HMWRMLGH--G-AKS-LVGIDPTVLFLCQFEAVRKLLDNDKR 172 (314)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcH--HHHHHHHc--C-CCE-EEEEcCCHHHHHHHHHHHHHhccCCC
Confidence 45666655444 2333 2445899999999999 66556543 1 135 555666666544333322 1221 2
Q ss_pred eEEEEcCCCchhhcCCCCCccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 96 PQVITGEADDEELMDGLVDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.++.++. .+ ++...+||.||.=+-- .+..+++..+ +.+++||.+|.......|
T Consensus 173 v~~~~~~i--e~-lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 173 AILEPLGI--EQ-LHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred eEEEECCH--HH-CCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 77887777 44 4545589999976532 2334667776 666669999887655444
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.6e-05 Score=68.11 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=70.6
Q ss_pred CCHHHHHHHH-HHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEE
Q 027826 25 HESGVAELVS-AMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVI 99 (218)
Q Consensus 25 i~p~~g~fL~-~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i 99 (218)
+.+.+.+-|. .+....+ ..++||++||+|. -++.||..+ .+ |+.+|.++...+.++.+ ...|+. ++++
T Consensus 187 ~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~--~sl~la~~~----~~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~ 259 (362)
T PRK05031 187 PNAAVNEKMLEWALDATKGSKGDLLELYCGNGN--FTLALARNF----RR-VLATEISKPSVAAAQYNIAANGIDNVQII 259 (362)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCeEEEEeccccH--HHHHHHhhC----CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4444444444 4444333 2579999999998 565666643 35 66678888887776655 567887 9999
Q ss_pred EcCCCchhhcCCC---------------C-CccEEEEeCCcc-CcHHHHHHh
Q 027826 100 TGEADDEELMDGL---------------V-DIDFLVVDSRRK-DFARVLRLA 134 (218)
Q Consensus 100 ~GdA~~~e~L~~l---------------~-~fDfVFIDa~K~-~Y~~~~~~~ 134 (218)
.+|+ .+.|+.+ . +||+||+|-... .+.+.++.+
T Consensus 260 ~~d~--~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l 309 (362)
T PRK05031 260 RMSA--EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLV 309 (362)
T ss_pred ECCH--HHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHH
Confidence 9999 8877643 1 589999998754 467777777
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=65.83 Aligned_cols=118 Identities=16% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHHHhc------CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-
Q 027826 24 SHESGVAELVSAMAAGW------DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS- 95 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~------~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~- 95 (218)
|--||+.++..+.+... +...|||+|||+|. .+++|+..++ .++ ++.++..+.....|..+ .+++++
T Consensus 125 IPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGa--Islsll~~L~--~~~-v~AiD~S~~Ai~La~eN~qr~~l~g 199 (328)
T KOG2904|consen 125 IPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGA--ISLSLLHGLP--QCT-VTAIDVSKAAIKLAKENAQRLKLSG 199 (328)
T ss_pred ecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccH--HHHHHHhcCC--Cce-EEEEeccHHHHHHHHHHHHHHhhcC
Confidence 34688888887776543 33479999999999 7888998887 467 66667777665666555 588887
Q ss_pred -eEEE----EcCCCchhhcCCCC-CccEE-------------E-------------EeCCccCcHHHHHHh----cCCCC
Q 027826 96 -PQVI----TGEADDEELMDGLV-DIDFL-------------V-------------VDSRRKDFARVLRLA----NLSSR 139 (218)
Q Consensus 96 -i~~i----~GdA~~~e~L~~l~-~fDfV-------------F-------------IDa~K~~Y~~~~~~~----~L~~~ 139 (218)
|+++ ++|+ .+..+.+. ++|++ + +|+.-+.|..++..+ +++++
T Consensus 200 ~i~v~~~~me~d~--~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~ 277 (328)
T KOG2904|consen 200 RIEVIHNIMESDA--SDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQP 277 (328)
T ss_pred ceEEEeccccccc--ccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhccc
Confidence 7776 7888 66665432 44444 3 344444555544443 56666
Q ss_pred CeEEEEeCC
Q 027826 140 GAVLVCKNA 148 (218)
Q Consensus 140 GgvIV~DNv 148 (218)
||.+...=+
T Consensus 278 gg~~~le~~ 286 (328)
T KOG2904|consen 278 GGFEQLELV 286 (328)
T ss_pred CCeEEEEec
Confidence 888776544
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00012 Score=67.32 Aligned_cols=95 Identities=16% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCC-CCccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGL-VDIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l-~~fDfV 118 (218)
...+|||||||+|. .++.++...+ +++ ++.++.++++.+.++.... .. ++++.||+ .+ ++-- ++||+|
T Consensus 113 ~~~~VLDLGcGtG~--~~l~La~~~~--~~~-VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~--e~-lp~~~~sFDvV 182 (340)
T PLN02490 113 RNLKVVDVGGGTGF--TTLGIVKHVD--AKN-VTILDQSPHQLAKAKQKEP--LKECKIIEGDA--ED-LPFPTDYADRY 182 (340)
T ss_pred CCCEEEEEecCCcH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHhhh--ccCCeEEeccH--Hh-CCCCCCceeEE
Confidence 34699999999999 7777777653 356 6667888877666554322 22 78899999 65 3322 389999
Q ss_pred EEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 119 VVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 119 FIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
+.-..- .+-...++.+ +++++||.+++
T Consensus 183 Is~~~L~~~~d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 183 VSAGSIEYWPDPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred EEcChhhhCCCHHHHHHHHHHhcCCCcEEEE
Confidence 885421 1334567777 66666888754
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=68.89 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHH--HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMA--AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~ 100 (218)
+....+++...++ ......+||++.++-|- -|+.||..+.. .|. |+..|.++.+.... +++.+.|+. |.+..
T Consensus 95 vQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGg--KTt~la~~l~~-~g~-lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~ 170 (470)
T PRK11933 95 IQEASSMLPVAALFADDNAPQRVLDMAAAPGS--KTTQIAALMNN-QGA-IVANEYSASRVKVLHANISRCGVSNVALTH 170 (470)
T ss_pred EECHHHHHHHHHhccCCCCCCEEEEeCCCccH--HHHHHHHHcCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4445555555555 34566799999999997 77778887754 577 55567777776654 566799998 89999
Q ss_pred cCCCchhhcCCCC-CccEEEEeCCccCc-------------------------HHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 101 GEADDEELMDGLV-DIDFLVVDSRRKDF-------------------------ARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~l~-~fDfVFIDa~K~~Y-------------------------~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.|+ ...-+.+. .||.|++||--+.- .+.++.+ .++++||.||.-=-.+.-
T Consensus 171 ~D~--~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 171 FDG--RVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred Cch--hhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 999 66444444 79999999874311 2334444 566679998765544433
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.1e-05 Score=66.16 Aligned_cols=111 Identities=21% Similarity=0.408 Sum_probs=71.8
Q ss_pred HHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcCCC
Q 027826 29 VAELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~GdA~ 104 (218)
-..+..+|-.. ..-.++|++=+|+|. +|+= |+.. |++.++.+|.+++..... +++...+++ ++++.+|+
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGa----lGlE-ALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~- 101 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGA----LGLE-ALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDA- 101 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSH----HHHH-HHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSH-
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCc----cHHH-HHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCH-
Confidence 34566666666 788899998777776 3432 2222 444477788988766654 455677777 89999999
Q ss_pred chhhcCCC----CCccEEEEeCC--ccC-cHHHHHHh---cCCCCCeEEEEeC
Q 027826 105 DEELMDGL----VDIDFLVVDSR--RKD-FARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 105 ~~e~L~~l----~~fDfVFIDa~--K~~-Y~~~~~~~---~L~~~GgvIV~DN 147 (218)
...|+++ .+||+||+|-. +.. |.+.++.+ .++.++|+||+-.
T Consensus 102 -~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 102 -FKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -HHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -HHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 8888765 39999999975 233 47777776 4556699998754
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00023 Score=65.44 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=74.4
Q ss_pred CCHHHHHH-HHHHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEE
Q 027826 25 HESGVAEL-VSAMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVI 99 (218)
Q Consensus 25 i~p~~g~f-L~~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i 99 (218)
+.+.+.+. +...+...+ ..+|||++||+|. -++.||..+ .+ |+.+|.+++..+.++.+ ...|++ ++++
T Consensus 178 ~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~--~sl~la~~~----~~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~ 250 (353)
T TIGR02143 178 PNAAVNIKMLEWACEVTQGSKGDLLELYCGNGN--FSLALAQNF----RR-VLATEIAKPSVNAAQYNIAANNIDNVQII 250 (353)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCcEEEEeccccH--HHHHHHHhC----CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEE
Confidence 33444433 444445443 4579999999999 666666653 35 77778888887776654 577887 9999
Q ss_pred EcCCCchhhcCC------C---C-------CccEEEEeCCcc-CcHHHHHHh-cCCCCCeEEE
Q 027826 100 TGEADDEELMDG------L---V-------DIDFLVVDSRRK-DFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 100 ~GdA~~~e~L~~------l---~-------~fDfVFIDa~K~-~Y~~~~~~~-~L~~~GgvIV 144 (218)
.+|+ .+.++. + . .||+||+|-... ..+..++.+ + + +++|.
T Consensus 251 ~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~--~-~~ivY 308 (353)
T TIGR02143 251 RMSA--EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA--Y-ERILY 308 (353)
T ss_pred EcCH--HHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc--C-CcEEE
Confidence 9999 887763 1 1 389999998644 467777877 4 3 55554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=68.04 Aligned_cols=107 Identities=15% Similarity=0.109 Sum_probs=74.3
Q ss_pred HHHHHHhcCC---CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchh
Q 027826 33 VSAMAAGWDA---RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEE 107 (218)
Q Consensus 33 L~~L~~~~~a---k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e 107 (218)
++.+.+..+. -+|||.-|++|. -+|=+|.-. .+.+.|+..|.+++..+..+.+ +..++. ++++.+|| ..
T Consensus 33 ~~~~~~~~~~~~~~~vLD~faGsG~--rgir~a~e~--~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da--~~ 106 (374)
T TIGR00308 33 IQAFDNLYGKECYINIADALSASGI--RAIRYAHEI--EGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA--AN 106 (374)
T ss_pred HHHHHHhhCCcCCCEEEECCCchhH--HHHHHHhhC--CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH--HH
Confidence 3334444444 389999999998 443333321 1334477788999877766544 456666 89999999 99
Q ss_pred hcCCCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 108 LMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.|.... .||+|++|. -+...++++.+ ...++||++.+-
T Consensus 107 ~l~~~~~~fDvIdlDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 107 VLRYRNRKFHVIDIDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred HHHHhCCCCCEEEeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 988764 799999999 46556899887 555558877654
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.83 E-value=9.7e-05 Score=66.00 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHH--HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEE
Q 027826 25 HESGVAELVSAMA--AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~--~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~ 100 (218)
-.|++..++..+. ....+++|||+|||+|. -+|++|...+ ..+ |+-.+.+++..+.|+.+ .+.|+. +.++.
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~--iai~la~~~~--~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~ 166 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGA--IAIALAKEGP--DAE-VIAVDISPDALALARENAERNGLVRVLVVQ 166 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHH--HHHHHHhhCc--CCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEe
Confidence 3677888887743 22222279999999999 6666777655 357 55557888887777765 578865 66777
Q ss_pred cCCCchhhcCCCCCccEEEE
Q 027826 101 GEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFI 120 (218)
+|. .+-++. +||+|.-
T Consensus 167 ~dl--f~~~~~--~fDlIVs 182 (280)
T COG2890 167 SDL--FEPLRG--KFDLIVS 182 (280)
T ss_pred eec--ccccCC--ceeEEEe
Confidence 777 665554 7888764
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00035 Score=65.10 Aligned_cols=96 Identities=19% Similarity=0.230 Sum_probs=70.1
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
.+|||++||+|. -+|-+|.... ..+ |+..|.+++..+.++.+ +..++. ++++.+|+ .+.+..-+.||+|++
T Consensus 59 ~~vLDl~aGsG~--~~l~~a~~~~--~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da--~~~l~~~~~fD~V~l 131 (382)
T PRK04338 59 ESVLDALSASGI--RGIRYALETG--VEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDA--NALLHEERKFDVVDI 131 (382)
T ss_pred CEEEECCCcccH--HHHHHHHHCC--CCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH--HHHHhhcCCCCEEEE
Confidence 589999999999 5555655432 135 67788999887776654 567787 88999999 888865337999999
Q ss_pred eCCccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 121 DSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 121 Da~K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|-- +.=.++++.+ ...++||+|-+-
T Consensus 132 DP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 974 4446788884 434448888764
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00037 Score=60.42 Aligned_cols=108 Identities=16% Similarity=0.199 Sum_probs=68.4
Q ss_pred HHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hh--------CCCc---e
Q 027826 30 AELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE--------AGFS---P 96 (218)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~--------agl~---i 96 (218)
+..|..|-- +..--+.|++|+++||+.++ +|.-...+++. ..-+|.-++..+..+.+ .+ ..++ .
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~--~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTAC--FARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHH--HHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 344444442 45556899999999995444 44333444443 34567778877776543 21 2233 7
Q ss_pred EEEEcCCCchhhcCCCCCccEEEEeCCccCcH-HHHHHhcCCCCCeEEE
Q 027826 97 QVITGEADDEELMDGLVDIDFLVVDSRRKDFA-RVLRLANLSSRGAVLV 144 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~-~~~~~~~L~~~GgvIV 144 (218)
.+++||. +..-+.-.+||-|++=|+-.+-+ ++++ .|++.|+++|
T Consensus 147 ~ivvGDg--r~g~~e~a~YDaIhvGAaa~~~pq~l~d--qL~~gGrlli 191 (237)
T KOG1661|consen 147 SIVVGDG--RKGYAEQAPYDAIHVGAAASELPQELLD--QLKPGGRLLI 191 (237)
T ss_pred EEEeCCc--cccCCccCCcceEEEccCccccHHHHHH--hhccCCeEEE
Confidence 7899999 88777777999999998855443 3333 4556455554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00039 Score=58.85 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=61.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCC--ceEEEEcCCCchhhcCCCCCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGF--SPQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl--~i~~i~GdA~~~e~L~~l~~f 115 (218)
..+.++|||||||+|. .+..++.. +.+ ++-+|.++++...++. +...++ .++++++|+ .+. + ++|
T Consensus 53 ~~~~~~vLDiGcG~G~--~~~~la~~----~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~--~~~-~--~~f 120 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGL--LSIELAKR----GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL--LSL-C--GEF 120 (219)
T ss_pred CCCCCEEEEEeCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--hhC-C--CCc
Confidence 4568999999999999 66666542 346 6677888888777654 445665 389999999 653 2 689
Q ss_pred cEEEE-eCCccCc-----HHHHHHh-cCCCCCeEEEE
Q 027826 116 DFLVV-DSRRKDF-----ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFI-Da~K~~Y-----~~~~~~~-~L~~~GgvIV~ 145 (218)
|+|+. +.- ..+ ...+..+ ++.++|+++.+
T Consensus 121 D~ii~~~~l-~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 121 DIVVCMDVL-IHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CEEEEhhHH-HhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 98875 332 112 2234444 45564555554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.8e-05 Score=70.20 Aligned_cols=112 Identities=20% Similarity=0.275 Sum_probs=80.3
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc---eEEEEcCCCchhhc
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~---i~~i~GdA~~~e~L 109 (218)
.++....+=|+||-+=|+||- -++. .|+. |++-||+++.+......++.+ .-.|+. ++++.+|+ .+.|
T Consensus 210 ~~l~~~~~GkrvLNlFsYTGg--fSv~--Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv--f~~l 281 (393)
T COG1092 210 RALGELAAGKRVLNLFSYTGG--FSVH--AALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV--FKWL 281 (393)
T ss_pred HHHhhhccCCeEEEecccCcH--HHHH--HHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH--HHHH
Confidence 445555668999999888887 5543 3322 453488888888777777644 577876 89999999 9999
Q ss_pred CCCC----CccEEEEeCC------------ccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 110 DGLV----DIDFLVVDSR------------RKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 110 ~~l~----~fDfVFIDa~------------K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
+.+. +||+|++|-. ...|.+....+ ++++|||++++=+-..+-.
T Consensus 282 ~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 282 RKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred HHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 8863 8999999943 23466666666 6666688888877765553
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.2e-05 Score=69.02 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc---eEEEEcCCCchhhcCCCC--
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS---PQVITGEADDEELMDGLV-- 113 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~---i~~i~GdA~~~e~L~~l~-- 113 (218)
.+-.+||+.=|+-|| |||.-+ . .|+..|.|+|.||...+.|+-+- .-++. |+++.||| .+++++++
T Consensus 133 ~~G~rVLDtC~GLGY--tAi~a~---~-rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~--~e~V~~~~D~ 204 (287)
T COG2521 133 KRGERVLDTCTGLGY--TAIEAL---E-RGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA--YEVVKDFDDE 204 (287)
T ss_pred ccCCEeeeeccCccH--HHHHHH---H-cCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH--HHHHhcCCcc
Confidence 345799998888889 885422 2 25644778899998877776542 33333 89999999 99999996
Q ss_pred CccEEEEeCCc-----cCcHH-HHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSRR-----KDFAR-VLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~K-----~~Y~~-~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+||+|.-|-.. +.|-+ +++.+ +++++||=+ +.=|--+|
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrl-FHYvG~Pg 249 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRL-FHYVGNPG 249 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcE-EEEeCCCC
Confidence 89999999532 55644 44445 666668875 55554444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0002 Score=62.87 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~Gd 102 (218)
.+++...+.+...+.....++|||||||+|+ -++.|+.. +.+ ++.+|.++.+...++..... .. +++++||
T Consensus 12 l~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~--lt~~L~~~----~~~-v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D 83 (258)
T PRK14896 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA--LTDELAKR----AKK-VYAIELDPRLAEFLRDDEIA-AGNVEIIEGD 83 (258)
T ss_pred cCCHHHHHHHHHhcCCCCcCeEEEEeCccCH--HHHHHHHh----CCE-EEEEECCHHHHHHHHHHhcc-CCCEEEEEec
Confidence 4678888888777777778999999999999 66666654 346 77789999887776544322 34 9999999
Q ss_pred CCchhhcCCCCCccEEEE
Q 027826 103 ADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFI 120 (218)
+ .+. .++.||.|+-
T Consensus 84 ~--~~~--~~~~~d~Vv~ 97 (258)
T PRK14896 84 A--LKV--DLPEFNKVVS 97 (258)
T ss_pred c--ccC--CchhceEEEE
Confidence 9 663 1345777764
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00034 Score=59.41 Aligned_cols=112 Identities=20% Similarity=0.351 Sum_probs=74.4
Q ss_pred HHHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcCCC
Q 027826 29 VAELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~GdA~ 104 (218)
-..+..+|.. ...=.++|++ |+|- -++|+= |+.. |+..++-+|.+.+..... ++....++. .+++.+||
T Consensus 30 REalFNil~~~~i~g~~~LDl--FAGS--GaLGlE-AlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da- 102 (187)
T COG0742 30 REALFNILAPDEIEGARVLDL--FAGS--GALGLE-ALSR-GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA- 102 (187)
T ss_pred HHHHHHhccccccCCCEEEEe--cCCc--cHhHHH-HHhC-CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH-
Confidence 3455666666 3677899995 5554 445543 3322 455577778888765554 455678865 99999999
Q ss_pred chhhcCCCC---CccEEEEeCC--ccCcHHHHHHh-----cCCCCCeEEEEeCC
Q 027826 105 DEELMDGLV---DIDFLVVDSR--RKDFARVLRLA-----NLSSRGAVLVCKNA 148 (218)
Q Consensus 105 ~~e~L~~l~---~fDfVFIDa~--K~~Y~~~~~~~-----~L~~~GgvIV~DNv 148 (218)
...|+++. +||+||+|-. |+.+....... .+++++|+||+-.-
T Consensus 103 -~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 103 -LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred -HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 88888875 4999999975 44553333333 44566899887653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00031 Score=63.10 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHH---HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEE
Q 027826 25 HESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQV 98 (218)
Q Consensus 25 i~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~ 98 (218)
+++++-.=+..++ .+..=.++||||||-|- .++-+|+-. |.+ |+-+..++++...++ .+++.|++ |++
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~--l~~~aA~~y---~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v 126 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGG--LAIYAAEEY---GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEV 126 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhH--HHHHHHHHc---CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEE
Confidence 3444444344444 45566799999999998 777777643 567 666678887776665 47899999 888
Q ss_pred EEcCCCchhhcCCCCCccEEE-Ee----CCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 99 ITGEADDEELMDGLVDIDFLV-VD----SRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~~l~~fDfVF-ID----a~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+.-|= .++-+ +||=|. |. --+++|+.||+.+ .++++||.++..-+...-
T Consensus 127 ~l~d~--rd~~e---~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 127 RLQDY--RDFEE---PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred Eeccc--ccccc---ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 87766 44333 366443 22 2368899999999 777779999887776433
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=9.5e-05 Score=65.27 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhc---CCCCcEEEE--EEcCCcc-------------
Q 027826 24 SHESGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVAS---RHTGGRHVC--LVPDERS------------- 81 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~---~~~~G~vit--t~e~~~~------------- 81 (218)
.+++.--..|+.+++.. =|-.|+|.|++-|- |++-|+..+ ..++-++.. |.+.-|+
T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGg--s~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~ 130 (248)
T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGG--SSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWE 130 (248)
T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSH--HHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCT
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCH--HHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhh
Confidence 35666666666666644 57789999999997 776544322 222323321 2221110
Q ss_pred -----------HHHHHHHHhhCCCc---eEEEEcCCCchhhcCCCC--CccEEEEeCCccCcHHHHHHh-----cCCCCC
Q 027826 82 -----------RSEYVHALGEAGFS---PQVITGEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA-----NLSSRG 140 (218)
Q Consensus 82 -----------~~~~a~~~~~agl~---i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~-----~L~~~G 140 (218)
..+..+++.+.|+. ++++.|.- .++||+.+ ++-|+.||+| .|....+.+ +|.+ |
T Consensus 131 ~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F--~dTLp~~p~~~IAll~lD~D--lYesT~~aLe~lyprl~~-G 205 (248)
T PF05711_consen 131 FHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWF--PDTLPDAPIERIALLHLDCD--LYESTKDALEFLYPRLSP-G 205 (248)
T ss_dssp CCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-H--HHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEE-E
T ss_pred hhhcccccccCHHHHHHHHHHcCCCcccEEEECCcc--hhhhccCCCccEEEEEEecc--chHHHHHHHHHHHhhcCC-C
Confidence 01112233467763 99999999 99999875 8999999998 777765554 4545 9
Q ss_pred eEEEEeCCCCCC
Q 027826 141 AVLVCKNAYSRN 152 (218)
Q Consensus 141 gvIV~DNvl~~G 152 (218)
|+||+|+-.+.|
T Consensus 206 GiIi~DDY~~~g 217 (248)
T PF05711_consen 206 GIIIFDDYGHPG 217 (248)
T ss_dssp EEEEESSTTTHH
T ss_pred eEEEEeCCCChH
Confidence 999999977755
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00025 Score=59.85 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=70.8
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCC-CCccEEEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGL-VDIDFLVV 120 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l-~~fDfVFI 120 (218)
+++.||||.|.-|-- ||.+.+ +-+ ++-+|....+...-+.. .+.|++ ++++++++ .+ +.. ..||+|.-
T Consensus 51 ~~lDiGSGaGfPGip--LaI~~p--~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~--E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIP--LAIARP--DLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRA--EE--PEYRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHH--HHHH-T--TSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H--HH--TTTTT-EEEEEE
T ss_pred eEEecCCCCCChhHH--HHHhCC--CCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee--cc--cccCCCccEEEe
Confidence 799999999995444 566555 457 66778877777666655 589999 99999999 77 333 39999999
Q ss_pred eCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 121 DSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 121 Da~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
=|- .....+++++ +++++||.+++ +.|.
T Consensus 122 RAv-~~l~~l~~~~~~~l~~~G~~l~----~KG~ 150 (184)
T PF02527_consen 122 RAV-APLDKLLELARPLLKPGGRLLA----YKGP 150 (184)
T ss_dssp ESS-SSHHHHHHHHGGGEEEEEEEEE----EESS
T ss_pred ehh-cCHHHHHHHHHHhcCCCCEEEE----EcCC
Confidence 997 6788999998 76666998864 4663
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00018 Score=65.10 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCC
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA 103 (218)
.-.-++|..+.+ +.++||.+|||+|. -+|+.++ . |.+-+.-.+.||-..++++.+ ...++. ++.-..+.
T Consensus 150 ~lcL~~Le~~~~--~g~~vlDvGcGSGI--LaIAa~k--L--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~ 221 (300)
T COG2264 150 SLCLEALEKLLK--KGKTVLDVGCGSGI--LAIAAAK--L--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL 221 (300)
T ss_pred HHHHHHHHHhhc--CCCEEEEecCChhH--HHHHHHH--c--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc
Confidence 334466666666 99999999999998 4443333 2 333355567888777777766 467776 55555555
Q ss_pred CchhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 104 ~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.+.... .+||+|+---=-+--..+.+.+ .+++|||.+|.-=++
T Consensus 222 --~~~~~~-~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 222 --LEVPEN-GPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred --hhhccc-CcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 443332 4899999765333333444444 555569999876655
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.2e-05 Score=65.02 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHh---cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEEE
Q 027826 25 HESGVAELVSAMAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~~~---~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i~ 100 (218)
+.|-.-.+++.-++. ..-++||.||||.|. -+..||+. |.. |+-++..++..+.|+.. .+.|+.|+...
T Consensus 40 ~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~--Lse~mAr~----Ga~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~ 112 (243)
T COG2227 40 INPLRLDYIREVARLRFDLPGLRVLDVGCGGGI--LSEPLARL----GAS-VTGIDASEKPIEVAKLHALESGVNIDYRQ 112 (243)
T ss_pred eccchhhhhhhhhhcccCCCCCeEEEecCCccH--hhHHHHHC----CCe-eEEecCChHHHHHHHHhhhhccccccchh
Confidence 344444555555555 677899999999998 55556653 455 77788888888888765 48998899999
Q ss_pred cCCCchhhcCCCCCccEEEEeCCccCcHH---HHHHh-cCCCCCeEEEEeCCC
Q 027826 101 GEADDEELMDGLVDIDFLVVDSRRKDFAR---VLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~---~~~~~-~L~~~GgvIV~DNvl 149 (218)
..+ .+....-++||+|..=---++|++ ++..| ++++|||+++.--+-
T Consensus 113 ~~~--edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 113 ATV--EDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhH--HHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 888 776665579999986544444432 55556 777779998776654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00027 Score=61.37 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcC-CCCcEEEEEEcCCccHHHHH-HHHhhCCC-ceE-EEEcCCCchhhcCCCC--C
Q 027826 41 DARLIVETWSHGGATATSVGLAVASR-HTGGRHVCLVPDERSRSEYV-HALGEAGF-SPQ-VITGEADDEELMDGLV--D 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~-~~~G~vitt~e~~~~~~~~a-~~~~~agl-~i~-~i~GdA~~~e~L~~l~--~ 114 (218)
+--.+||||||+|- - -.-.+ .++-+ ||.++-++.+.+.+ +.+++.-. +++ ++++++ |-|++|. +
T Consensus 76 ~K~~vLEvgcGtG~--N----fkfy~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s 145 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGA--N----FKFYPWKPINS-VTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGS 145 (252)
T ss_pred CccceEEecccCCC--C----cccccCCCCce-EEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCC
Confidence 33457999999994 1 11112 13446 67778888887776 45554433 355 899988 6688885 8
Q ss_pred ccEE---EEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCCccchh-hhhhhccCCCCCeEEEEeecCCcEEEEE
Q 027826 115 IDFL---VVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRNDSTFR-WKNVLDGRSRRLVRSVYLPVGKGLDIAH 185 (218)
Q Consensus 115 fDfV---FIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~~~~~-~~~~~~~~~~~~~~s~~lPiGDGl~v~r 185 (218)
||-| |+=|.-++-.+.++.+ ++++|||.|++ +=|+...+. |++.+.. .++..-.-++||-.++|
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif---iEHva~~y~~~n~i~q~----v~ep~~~~~~dGC~ltr 214 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF---IEHVAGEYGFWNRILQQ----VAEPLWHLESDGCVLTR 214 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE---EecccccchHHHHHHHH----HhchhhheeccceEEeh
Confidence 9977 4556667777888887 77777888865 334543333 3333221 12222333678866665
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=59.81 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=52.5
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCCCchhhcCCCC--C-cc
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEADDEELMDGLV--D-ID 116 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA~~~e~L~~l~--~-fD 116 (218)
+.|+++-||.|- -+|.+|+.. -+ |+.+|.++.+...++.+. -+|++ |++++||+ .+.++++. . +|
T Consensus 1 ~~vlD~fcG~GG--NtIqFA~~~----~~-Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~--~~~~~~~~~~~~~D 71 (163)
T PF09445_consen 1 TTVLDAFCGVGG--NTIQFARTF----DR-VIAIDIDPERLECAKHNAEVYGVADNIDFICGDF--FELLKRLKSNKIFD 71 (163)
T ss_dssp SEEEETT-TTSH--HHHHHHHTT-----E-EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H--HHHGGGB------S
T ss_pred CEEEEeccCcCH--HHHHHHHhC----Ce-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH--HHHHhhcccccccc
Confidence 468898888886 999999862 35 666789999999988875 79987 99999999 99998875 3 89
Q ss_pred EEEEeCCc
Q 027826 117 FLVVDSRR 124 (218)
Q Consensus 117 fVFIDa~K 124 (218)
+||+|-.-
T Consensus 72 ~vFlSPPW 79 (163)
T PF09445_consen 72 VVFLSPPW 79 (163)
T ss_dssp EEEE---B
T ss_pred EEEECCCC
Confidence 99999743
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00021 Score=60.57 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=62.0
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCc-eEEEEcCCCchhhcCCC---CCccEE
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFS-PQVITGEADDEELMDGL---VDIDFL 118 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~-i~~i~GdA~~~e~L~~l---~~fDfV 118 (218)
.+||||||.|- ..+.+|...+ +-..|- +|....... +.+...+.++. +.++.+|| .+.|+.+ .++|-|
T Consensus 20 l~lEIG~G~G~--~l~~~A~~~P--d~n~iG-iE~~~~~v~~a~~~~~~~~l~Nv~~~~~da--~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 20 LILEIGCGKGE--FLIELAKRNP--DINFIG-IEIRKKRVAKALRKAEKRGLKNVRFLRGDA--RELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEET-TTSH--HHHHHHHHST--TSEEEE-EES-HHHHHHHHHHHHHHTTSSEEEEES-C--TTHHHHHSTTTSEEEE
T ss_pred eEEEecCCCCH--HHHHHHHHCC--CCCEEE-EecchHHHHHHHHHHHhhcccceEEEEccH--HHHHhhcccCCchheE
Confidence 89999999998 8888888765 345444 566555443 33455677998 99999999 8877654 278877
Q ss_pred EE---eCC-cc-------CcHHHHHHh-cCCCCCeEE
Q 027826 119 VV---DSR-RK-------DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 119 FI---Da~-K~-------~Y~~~~~~~-~L~~~GgvI 143 (218)
|| |-| |. -.+++++.+ .++++||.|
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 77 554 22 357788887 555558876
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=54.88 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=66.0
Q ss_pred HHHHHHHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCch
Q 027826 28 GVAELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDE 106 (218)
Q Consensus 28 ~~g~fL~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~ 106 (218)
...+++..+.. ....++||||||+.|. .+..|+.. +-+ ++-++.++..... ..+....-++ .
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~~----~~~-~~g~D~~~~~~~~--------~~~~~~~~~~--~ 70 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGS--FLRALAKR----GFE-VTGVDISPQMIEK--------RNVVFDNFDA--Q 70 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSH--HHHHHHHT----TSE-EEEEESSHHHHHH--------TTSEEEEEEC--H
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCH--HHHHHHHh----CCE-EEEEECCHHHHhh--------hhhhhhhhhh--h
Confidence 34566776664 6889999999999998 66556442 336 6667777755444 1122222222 2
Q ss_pred hhcCCCCCccEEEEeCCccCcH---HHHHHh-cCCCCCeEEEEeCCCC
Q 027826 107 ELMDGLVDIDFLVVDSRRKDFA---RVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 107 e~L~~l~~fDfVFIDa~K~~Y~---~~~~~~-~L~~~GgvIV~DNvl~ 150 (218)
+....=++||+|+.=.--+.-+ .+++.+ .+++|||.+++.....
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 2122223899999886655443 444455 6666699999888754
|
... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00063 Score=60.15 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhccCC-------CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc
Q 027826 9 TASKAYIDTVKSCEL-------SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS 81 (218)
Q Consensus 9 ~a~~ayl~~l~~~~~-------~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~ 81 (218)
+.+++++..-..... .+++...+.+...+......+|||||||+|. .+..|+.. +.+ ++.+|.+++
T Consensus 3 ~~~~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~--lt~~L~~~----~~~-v~avE~d~~ 75 (272)
T PRK00274 3 PRTRELLERYGHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA--LTEPLLER----AAK-VTAVEIDRD 75 (272)
T ss_pred hhHHHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH--HHHHHHHh----CCc-EEEEECCHH
Confidence 445666655433211 4677776666655666677899999999999 66666664 236 667788888
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCchhh
Q 027826 82 RSEYVHALGEAGFSPQVITGEADDEEL 108 (218)
Q Consensus 82 ~~~~a~~~~~agl~i~~i~GdA~~~e~ 108 (218)
+.+.++..... -.+++++||+ .+.
T Consensus 76 ~~~~~~~~~~~-~~v~~i~~D~--~~~ 99 (272)
T PRK00274 76 LAPILAETFAE-DNLTIIEGDA--LKV 99 (272)
T ss_pred HHHHHHHhhcc-CceEEEEChh--hcC
Confidence 87766543222 2389999999 653
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0009 Score=60.84 Aligned_cols=107 Identities=14% Similarity=0.048 Sum_probs=68.6
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEEEEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~i~GdA~~~e~L~~l~~fD 116 (218)
-..=|+||+|||+.|| -+.-|+.+ |.+.|.-++-.+......+.++ -.|.. ........ .|-|+.++.||
T Consensus 113 ~L~gk~VLDIGC~nGY--~~frM~~~----GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplg--vE~Lp~~~~FD 184 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGY--YSFRMLGR----GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLG--VEDLPNLGAFD 184 (315)
T ss_pred CcCCCEEEEecCCCcH--HHHHHhhc----CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcc--hhhccccCCcC
Confidence 4566899999999999 55445543 4554554555443322223333 34544 33455667 88888877999
Q ss_pred EEEEeCCc---cCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 117 FLVVDSRR---KDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 117 fVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
.||.=+-- .+-.+.+..+ ..+++||-+|.+-....|+
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 99987652 2334455555 3344599999999988886
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00057 Score=59.18 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=72.3
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCCCchhhcCCCCCccEEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA~~~e~L~~l~~fDfVF 119 (218)
+++++.||||.|. =+|=||.+.+ +.+ +|.+|....+...-+.. .+.|++ +++++|.| .+.=++.+-||+|-
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~p--~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra--E~~~~~~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAFP--DLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRA--EEFGQEKKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhcc--CCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhH--hhcccccccCcEEE
Confidence 7999999999999 4444665444 577 77788888777776665 589999 99999999 55443321299999
Q ss_pred EeCCccCcHHHHHHh-cCCCCCeEEE
Q 027826 120 VDSRRKDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 120 IDa~K~~Y~~~~~~~-~L~~~GgvIV 144 (218)
.=|- ..-..+++++ +++++||.++
T Consensus 141 sRAv-a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 141 SRAV-ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred eehc-cchHHHHHHHHHhcccCCcch
Confidence 9996 7778899999 7776677664
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.49 E-value=9.3e-05 Score=54.65 Aligned_cols=91 Identities=22% Similarity=0.149 Sum_probs=48.1
Q ss_pred EEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCc-eEEEEcCCCchhhcCCC--CCccEEEEe
Q 027826 46 VETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS-PQVITGEADDEELMDGL--VDIDFLVVD 121 (218)
Q Consensus 46 LEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~-i~~i~GdA~~~e~L~~l--~~fDfVFID 121 (218)
|||||++|. .+..++...+ +.+ ++-++.++.+.+. ++.+.+.+.. .+.+..+. .+..... ++||+|+.=
T Consensus 1 LdiGcG~G~--~~~~l~~~~~--~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGR--LLRALLEELP--DAR-YTGVDISPSMLERARERLAELGNDNFERLRFDV--LDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS---TTTTHHHHC---EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--S--SS---CCC----SEEEEE
T ss_pred CEeCccChH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeec--CChhhcccccccceehhh
Confidence 799999999 6656776653 567 5566777877643 4456655544 55555555 4444433 389999875
Q ss_pred CCc---cCcHHHHHHh-cCCCCCeEE
Q 027826 122 SRR---KDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 122 a~K---~~Y~~~~~~~-~L~~~GgvI 143 (218)
.-- ++-..+++.+ ++++|||++
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 432 3344566666 677779985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00069 Score=60.80 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~--i~~i~Gd 102 (218)
+|+.+..+. +.....-..|+|-|||+|- -+.++|+|..+ -|+ +.|.|..+.+++.| +.|++.|+. +++.+-|
T Consensus 91 t~Dia~I~~-~L~i~PGsvV~EsGTGSGS--lShaiaraV~p-tGh-l~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 91 TPDIAMILS-MLEIRPGSVVLESGTGSGS--LSHAIARAVAP-TGH-LYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred cccHHHHHH-HhcCCCCCEEEecCCCcch--HHHHHHHhhCc-Ccc-eEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 565555444 4566666799999999998 67778998876 589 66677877776654 678899998 8888777
Q ss_pred CCchhhcCCC-C-CccEEEEeCC
Q 027826 103 ADDEELMDGL-V-DIDFLVVDSR 123 (218)
Q Consensus 103 A~~~e~L~~l-~-~fDfVFIDa~ 123 (218)
. ...=-.. . .+|-||+|--
T Consensus 166 V--c~~GF~~ks~~aDaVFLDlP 186 (314)
T KOG2915|consen 166 V--CGSGFLIKSLKADAVFLDLP 186 (314)
T ss_pred c--ccCCccccccccceEEEcCC
Confidence 6 3311111 2 8999999965
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0005 Score=61.90 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCC-c-eEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGF-S-PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl-~-i~~i~ 100 (218)
.+++...+.+-..+......+|||||||+|. -+..++.. +++ ++.+|.++.+...++. +...+. . ++++.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~--LT~~Ll~~----~~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGN--LTEKLLQL----AKK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHH--HHHHHHHh----CCc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4567666666666666666899999999999 45445543 346 6778999988777654 455553 3 99999
Q ss_pred cCCCchhhcCCCCCccEEEEeCCccCc---HHHHHHh
Q 027826 101 GEADDEELMDGLVDIDFLVVDSRRKDF---ARVLRLA 134 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~K~~Y---~~~~~~~ 134 (218)
||+ ++. .+.+||.|+.+- .-| +-.++++
T Consensus 92 ~Da--l~~--~~~~~d~VvaNl--PY~Istpil~~ll 122 (294)
T PTZ00338 92 GDA--LKT--EFPYFDVCVANV--PYQISSPLVFKLL 122 (294)
T ss_pred CCH--hhh--cccccCEEEecC--CcccCcHHHHHHH
Confidence 999 763 245789887543 233 4455555
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0015 Score=55.71 Aligned_cols=108 Identities=16% Similarity=0.146 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCc
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADD 105 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~ 105 (218)
|.-.+++.+ +...++.++|.+|||.|= -++.||+. |--|+.++.++...+..+.++ +.+++|+....|-
T Consensus 17 ~~hs~v~~a-~~~~~~g~~LDlgcG~GR--NalyLA~~-----G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl-- 86 (192)
T PF03848_consen 17 PTHSEVLEA-VPLLKPGKALDLGCGEGR--NALYLASQ-----GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL-- 86 (192)
T ss_dssp ---HHHHHH-CTTS-SSEEEEES-TTSH--HHHHHHHT-----T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG--
T ss_pred CCcHHHHHH-HhhcCCCcEEEcCCCCcH--HHHHHHHC-----CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc--
Confidence 333444443 567789999999999998 88888873 555888889887665555554 7888888888886
Q ss_pred hhhcCCCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 106 EELMDGLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 106 ~e~L~~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.+.-.. ..||+|+-. -.++.-+..++.+ .-.++||+.+.
T Consensus 87 ~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 87 NDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp CCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 442211 389999642 3345666777777 33444999876
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=64.34 Aligned_cols=104 Identities=22% Similarity=0.422 Sum_probs=65.1
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCchhhcCC
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADDEELMDG 111 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~~e~L~~ 111 (218)
+.+..+-++||-+=|++|- -+ ++.+.. |++.|++++.+....+.++ ++.-.|+. ++++.+|+ .+.|.+
T Consensus 118 v~~~~~gkrvLnlFsYTGg--fs--v~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dv--f~~l~~ 189 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGG--FS--VAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDV--FKFLKR 189 (286)
T ss_dssp HHHHCTTCEEEEET-TTTH--HH--HHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-H--HHHHHH
T ss_pred HHHHcCCCceEEecCCCCH--HH--HHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH--HHHHHH
Confidence 3444567899998888875 33 333322 3434777788777666665 44555654 89999999 998876
Q ss_pred C---CCccEEEEeCC---------ccCcHHHHHHh-cCCCCCeEEE-EeC
Q 027826 112 L---VDIDFLVVDSR---------RKDFARVLRLA-NLSSRGAVLV-CKN 147 (218)
Q Consensus 112 l---~~fDfVFIDa~---------K~~Y~~~~~~~-~L~~~GgvIV-~DN 147 (218)
+ .+||+|++|-. ...|.+.+..+ +++++||+++ +-|
T Consensus 190 ~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 190 LKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred HhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 5 38999999953 23677777777 6776688765 455
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=52.05 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=54.2
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCC--Cc--eEE---EEcCCCch--
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAG--FS--PQV---ITGEADDE-- 106 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~ag--l~--i~~---i~GdA~~~-- 106 (218)
....+.++|||+|||+|. .+|.+|... ...+++.|+ .++ .....+ +....+ .. +++ -.|+. .
T Consensus 41 ~~~~~~~~VLELGaG~Gl--~gi~~a~~~--~~~~Vv~TD-~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~--~~~ 112 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTGL--PGIAAAKLF--GAARVVLTD-YNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDE--LDS 112 (173)
T ss_dssp GGGTTTSEEEETT-TTSH--HHHHHHHT---T-SEEEEEE--S--HHHHHHHHHHTT--------EEEE--TTS---HHH
T ss_pred hhhcCCceEEEECCccch--hHHHHHhcc--CCceEEEec-cch-hhHHHHHHHHhccccccccccCcEEEecCc--ccc
Confidence 346788999999999999 666555542 245766664 555 444444 433322 22 544 34554 3
Q ss_pred hhcCCCCCccEEEE-eC--CccCcHHHHHHh--cCCCCCeEEEEeCC
Q 027826 107 ELMDGLVDIDFLVV-DS--RRKDFARVLRLA--NLSSRGAVLVCKNA 148 (218)
Q Consensus 107 e~L~~l~~fDfVFI-Da--~K~~Y~~~~~~~--~L~~~GgvIV~DNv 148 (218)
+.++ -.+||+|+- |. +.+.++.+++.+ .+.+.+.++++.-.
T Consensus 113 ~~~~-~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 113 DLLE-PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp HHHS--SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccc-cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 2222 137888764 32 246777777777 44465667776644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00066 Score=59.28 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCC
Q 027826 33 VSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL 112 (218)
Q Consensus 33 L~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l 112 (218)
|-..+-...+++|+.+|||.|- ||=-|+.--+ +.. |+-++.++++.+.|+ +.....+|..||. .+.=+.
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGn--sTelL~~RwP--~A~-i~GiDsS~~Mla~Aa---~rlp~~~f~~aDl--~~w~p~- 90 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGN--STELLARRWP--DAV-ITGIDSSPAMLAKAA---QRLPDATFEEADL--RTWKPE- 90 (257)
T ss_pred HHhhCCccccceeeecCCCCCH--HHHHHHHhCC--CCe-EeeccCCHHHHHHHH---HhCCCCceecccH--hhcCCC-
Confidence 4445667899999999999997 6655776544 456 888899998876653 2233368888888 654442
Q ss_pred CCccEEEEeCCc---cCcHHHHHHh--cCCCCCeEEEE---eCCC
Q 027826 113 VDIDFLVVDSRR---KDFARVLRLA--NLSSRGAVLVC---KNAY 149 (218)
Q Consensus 113 ~~fDfVFIDa~K---~~Y~~~~~~~--~L~~~GgvIV~---DNvl 149 (218)
.+.|++|-.|.- .++++.|..+ .|.| ||++.+ ||..
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~P-gg~LAVQmPdN~d 134 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAP-GGVLAVQMPDNLD 134 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCC-CceEEEECCCccC
Confidence 289999999864 4556666665 5555 999876 5654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00073 Score=60.59 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=62.3
Q ss_pred CCCeEEEeCcC-cchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h-hCCCc--eEEEEcCCCchhhcCCCCCc
Q 027826 41 DARLIVETWSH-GGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G-EAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~-~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~-~agl~--i~~i~GdA~~~e~L~~l~~f 115 (218)
.|++|+=||+| .-. |+|.||..... +.. ++.++.+++..+.++.+ . ..|++ ++|+++|+ .+.-..+..|
T Consensus 120 ~p~rVaFIGSGPLPl--T~i~la~~~~~-~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~--~~~~~dl~~~ 193 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPL--TSIVLAKQHGP-GAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADV--LDVTYDLKEY 193 (276)
T ss_dssp ---EEEEE---SS-H--HHHHHH--HTT---E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G--GGG-GG----
T ss_pred ccceEEEEcCCCcch--HHHHHHHHhCC-CCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch--hccccccccC
Confidence 46799999997 455 99999975432 345 66778999888877665 4 46766 99999999 8776678899
Q ss_pred cEEEEeCCcc----CcHHHHHHh-cCCCCCeEEEEe
Q 027826 116 DFLVVDSRRK----DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 116 DfVFIDa~K~----~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|.||+=|--+ .=.+.|+.+ +..++|++|+.=
T Consensus 194 DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 194 DVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9999998766 888899998 555559999876
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0011 Score=58.47 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=61.2
Q ss_pred CCCeEEEeCcCcchHHHHHH--HHHhcCC---CCcEEEEEEcCCccHHHHHHHHh--------------------hC---
Q 027826 41 DARLIVETWSHGGATATSVG--LAVASRH---TGGRHVCLVPDERSRSEYVHALG--------------------EA--- 92 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaig--lA~a~~~---~~G~vitt~e~~~~~~~~a~~~~--------------------~a--- 92 (218)
++-+|+++|||+|--..+|+ |+...+. .+.+ |+-.+.++++.+.|+.-. ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 45699999999996333444 3443332 2356 555578887766554310 00
Q ss_pred ----CCc--eEEEEcCCCchhhcCCCCCccEEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 93 ----GFS--PQVITGEADDEELMDGLVDIDFLVVDSR-----RKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 93 ----gl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
.+. |++..+|. .+.-+...+||+||.-.- .+.-...++.+ ..+++||.+++=.
T Consensus 178 ~v~~~ir~~V~F~~~dl--~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNL--LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccC--CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 112 78889998 664333458999997321 11222455555 5556699988744
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=54.68 Aligned_cols=139 Identities=12% Similarity=0.129 Sum_probs=89.6
Q ss_pred ccChhhhHHHHHHhhhccCC------CCCHHHHHHHHHHHH--hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEE
Q 027826 4 VWSPETASKAYIDTVKSCEL------SHESGVAELVSAMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCL 75 (218)
Q Consensus 4 ~~~~~~a~~ayl~~l~~~~~------~i~p~~g~fL~~L~~--~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt 75 (218)
.|+.+++.+.|+.+-+.... ++..=.-.++..++. ..+-.+|||||=|-|.+.|. +-++ ++ .-+ ++
T Consensus 56 ~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~--iQe~-~p-~~H--~I 129 (271)
T KOG1709|consen 56 ADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTF--IQEA-PP-DEH--WI 129 (271)
T ss_pred ccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHHHHHhhCCceEEEeccchHHHHHH--Hhhc-CC-cce--EE
Confidence 47778888887776333211 111111122333322 26778999998888875444 2332 32 334 45
Q ss_pred EcCCccHHHHHHHHhhCCCc----eEEEEcCCCchhhcCCCC--CccEEEEeCCccCcHHHHHHh----cCCCCCeEEEE
Q 027826 76 VPDERSRSEYVHALGEAGFS----PQVITGEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA----NLSSRGAVLVC 145 (218)
Q Consensus 76 ~e~~~~~~~~a~~~~~agl~----i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~----~L~~~GgvIV~ 145 (218)
+|-+|+..+. +++.|-. |-++.|.- .+++++|. .||=||-|+--+.|.+..+.- .|++|+|++-.
T Consensus 130 iE~hp~V~kr---mr~~gw~ek~nViil~g~W--eDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 130 IEAHPDVLKR---MRDWGWREKENVIILEGRW--EDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred EecCHHHHHH---HHhcccccccceEEEecch--HhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 5777754433 3322222 77888999 89999985 899999999989998876654 77777999988
Q ss_pred eCCCCCCc
Q 027826 146 KNAYSRND 153 (218)
Q Consensus 146 DNvl~~G~ 153 (218)
=|-+..+.
T Consensus 205 fNg~~~~~ 212 (271)
T KOG1709|consen 205 FNGLGADN 212 (271)
T ss_pred ecCcccch
Confidence 88876663
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0043 Score=52.96 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEE
Q 027826 24 SHESGVAELVSAMAAGWD---ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i 99 (218)
..++..+..+-..+.+.+ -+.|+.+|||||. -+ ++.++. |.+.|+.+|.|++..++++.+. +.+..++++
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~--La--~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~ 98 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGI--LA--IGAALL--GASRVLAVDIDPEALEIARANAEELLGDVEFV 98 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCH--HH--HHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCCceEEE
Confidence 345666666666666554 4679999999998 33 333333 3344777899999998888775 533339999
Q ss_pred EcCCCchhhcCCCCCccEEEEeC
Q 027826 100 TGEADDEELMDGLVDIDFLVVDS 122 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~fDfVFIDa 122 (218)
+.|+ .+.= .++|-++++-
T Consensus 99 ~~dv--~~~~---~~~dtvimNP 116 (198)
T COG2263 99 VADV--SDFR---GKFDTVIMNP 116 (198)
T ss_pred Ecch--hhcC---CccceEEECC
Confidence 9999 4322 1566666663
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0066 Score=53.50 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcC-CCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASR-HTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~-~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
+..+.++. +......+|||+|||+|. -++.++..++ +...+ |+.+|.++.....++.+.. .++++.+|+
T Consensus 37 ~~iAr~~~--i~~~~~grVLDlG~GSG~--Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~---~~~~~~~D~-- 106 (241)
T PHA03412 37 IGLARDFT--IDACTSGSVVDLCAGIGG--LSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVP---EATWINADA-- 106 (241)
T ss_pred HHHHHHHH--HhccCCCEEEEccChHHH--HHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhcc---CCEEEEcch--
Confidence 44445543 234456899999999998 5555665543 22456 7778999987777764421 278999999
Q ss_pred hhhcCCCCCccEEEEeCC---------ccC------cHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 106 EELMDGLVDIDFLVVDSR---------RKD------FARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~---------K~~------Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
..... -.+||+|+-.-- +.. ...+++.+ +|+++|++|+=-|++-.+
T Consensus 107 ~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~ 168 (241)
T PHA03412 107 LTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSANFR 168 (241)
T ss_pred hcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccccCc
Confidence 65321 138999986421 111 22244444 777879987777776333
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0072 Score=55.01 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCC------CceEEEEcCCCchhhcCCCC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAG------FSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~ag------l~i~~i~GdA~~~e~L~~l~ 113 (218)
+..+|||||||+|. .++.|+.. +.+ |+-++.++.+.+.++.. ...+ ..+++..+|. .+. + .
T Consensus 144 ~~~~VLDlGcGtG~--~a~~la~~----g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl--~~l-~--~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGS--LAIPLALE----GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL--ESL-S--G 211 (315)
T ss_pred CCCEEEEecCCCCH--HHHHHHHC----CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch--hhc-C--C
Confidence 45799999999999 66666652 456 67778989887776654 3431 2278888887 542 2 4
Q ss_pred CccEEEE-eCCccCc-----HHHHHHh-cCCCCCeEEEEe
Q 027826 114 DIDFLVV-DSRRKDF-----ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 114 ~fDfVFI-Da~K~~Y-----~~~~~~~-~L~~~GgvIV~D 146 (218)
+||+|+. |.- .+| ...++.+ .+.+ |++||..
T Consensus 212 ~fD~Vv~~~vL-~H~p~~~~~~ll~~l~~l~~-g~liIs~ 249 (315)
T PLN02585 212 KYDTVTCLDVL-IHYPQDKADGMIAHLASLAE-KRLIISF 249 (315)
T ss_pred CcCEEEEcCEE-EecCHHHHHHHHHHHHhhcC-CEEEEEe
Confidence 7998863 321 223 3345555 4444 7887754
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0047 Score=53.22 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=60.8
Q ss_pred HHHHHHHHh-cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhc
Q 027826 31 ELVSAMAAG-WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELM 109 (218)
Q Consensus 31 ~fL~~L~~~-~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L 109 (218)
+++..+... ..+.+|||||||+|. .+..|+... +++ |+-+|.++++.+.++.- .+.++||+ .+ +
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~--~~~~l~~~~---~~~-v~gvD~S~~Ml~~a~~~------~~~~~~d~--~~-l 104 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGE--LSYHFKKVF---KYY-VVALDYAENMLKMNLVA------DDKVVGSF--EA-L 104 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCH--HHHHHHHhc---CCE-EEEECCCHHHHHHHHhc------cceEEech--hh-C
Confidence 445555443 347899999999999 666676643 357 66678888887766531 24578898 54 4
Q ss_pred CCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCC
Q 027826 110 DGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRG 140 (218)
Q Consensus 110 ~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~G 140 (218)
|--+ +||.|+.=-.- .+....++.+ +++++.
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 5333 89999975432 2334555555 555444
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0014 Score=54.60 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEE
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFL 118 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfV 118 (218)
...+|||||||+|. .+..++... +.. ++.+|.+++....++ +.+ ++++.+|+ .+.++.+. +||+|
T Consensus 13 ~~~~iLDiGcG~G~--~~~~l~~~~---~~~-~~giD~s~~~i~~a~---~~~--~~~~~~d~--~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGE--LLALLRDEK---QVR-GYGIEIDQDGVLACV---ARG--VNVIQGDL--DEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCH--HHHHHHhcc---CCc-EEEEeCCHHHHHHHH---HcC--CeEEEEEh--hhcccccCCCCcCEE
Confidence 45699999999998 555555432 234 455677765544432 223 67888999 76554442 89999
Q ss_pred EEeCC
Q 027826 119 VVDSR 123 (218)
Q Consensus 119 FIDa~ 123 (218)
+.-..
T Consensus 80 i~~~~ 84 (194)
T TIGR02081 80 ILSQT 84 (194)
T ss_pred EEhhH
Confidence 98643
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0062 Score=55.22 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~G 101 (218)
-++..+--||+.|-...+- +||.+|||+|++|.. ||+..+ ..+ ++-.+.+....+.++.+ ...+++ .+++.+
T Consensus 142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~--la~~~p--~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 142 KLDKGSRLLLETLPPDLGG-KVLDLGCGYGVLGLV--LAKKSP--QAK-LTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred CcChHHHHHHHhCCccCCC-cEEEeCCCccHHHHH--HHHhCC--CCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 4677778888888887776 999999999994443 676544 567 55556666666666644 567777 588889
Q ss_pred CCCchhhcCCCCCccEEEEeCCc----cCcH----HHHHHh--cCCCCCeEEEEeC
Q 027826 102 EADDEELMDGLVDIDFLVVDSRR----KDFA----RVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 102 dA~~~e~L~~l~~fDfVFIDa~K----~~Y~----~~~~~~--~L~~~GgvIV~DN 147 (218)
|. .+-.+. .||+|..--.- .--. +.++.+ .|.+.|-+-|+=|
T Consensus 216 ~~--~~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 216 NL--YEPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cc--cccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 88 665554 89999865332 2222 555555 6777566777777
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=65.79 Aligned_cols=89 Identities=9% Similarity=-0.045 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCC------
Q 027826 25 HESGVAELVSAMAAGW----DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAG------ 93 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~ag------ 93 (218)
-.|++-.|...|.... +.++|||+|||+|+ .++.+|...+ .++ ++.+|.+++..+.|+.+. ..+
T Consensus 98 PRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~--Iai~La~~~~--~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~ 172 (1082)
T PLN02672 98 PEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGW--ISIAIAEKWL--PSK-VYGLDINPRAVKVAWINLYLNALDDDGL 172 (1082)
T ss_pred CchhHHHHHHHHHhcccccCCCCEEEEEecchHH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHcCcccccc
Confidence 3577777777744321 24689999999999 5666776544 357 666688898877776553 322
Q ss_pred ---------C-c-eEEEEcCCCchhhcCCCC-CccEEEE
Q 027826 94 ---------F-S-PQVITGEADDEELMDGLV-DIDFLVV 120 (218)
Q Consensus 94 ---------l-~-i~~i~GdA~~~e~L~~l~-~fDfVFI 120 (218)
+ . +++++||. .+.++... +||+|.-
T Consensus 173 ~~~~~~~~~l~~rV~f~~sDl--~~~~~~~~~~fDlIVS 209 (1082)
T PLN02672 173 PVYDGEGKTLLDRVEFYESDL--LGYCRDNNIELDRIVG 209 (1082)
T ss_pred cccccccccccccEEEEECch--hhhccccCCceEEEEE
Confidence 1 2 89999999 87775443 6888764
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=55.18 Aligned_cols=96 Identities=18% Similarity=0.113 Sum_probs=53.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~~fDfV 118 (218)
-...++||+||+.|. -+--||. ...+ ++.++..+...+.++. +-++.. |+++.++. -+..|. .+||+|
T Consensus 42 ~ry~~alEvGCs~G~--lT~~LA~----rCd~-LlavDis~~Al~~Ar~-Rl~~~~~V~~~~~dv--p~~~P~-~~FDLI 110 (201)
T PF05401_consen 42 RRYRRALEVGCSIGV--LTERLAP----RCDR-LLAVDISPRALARARE-RLAGLPHVEWIQADV--PEFWPE-GRFDLI 110 (201)
T ss_dssp SSEEEEEEE--TTSH--HHHHHGG----GEEE-EEEEES-HHHHHHHHH-HTTT-SSEEEEES-T--TT---S-S-EEEE
T ss_pred cccceeEecCCCccH--HHHHHHH----hhCc-eEEEeCCHHHHHHHHH-hcCCCCCeEEEECcC--CCCCCC-CCeeEE
Confidence 344799999999998 4433443 2456 5556777755544442 123445 99999998 554442 389999
Q ss_pred EEeCCccCcHH-------HHHHh-cCCCCCeEEEEeC
Q 027826 119 VVDSRRKDFAR-------VLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 119 FIDa~K~~Y~~-------~~~~~-~L~~~GgvIV~DN 147 (218)
.+=. -..|.. +++.+ ..+.|||.+|+=.
T Consensus 111 V~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 8764 355552 33333 4444588888743
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=53.13 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHHH----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEEEcCC
Q 027826 31 ELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVITGEA 103 (218)
Q Consensus 31 ~fL~~L~~----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i~GdA 103 (218)
.+|.-++. ..+|.+||.+||+.|- --..|+.--- .++ ++-++..+...+.|++++ +-|++ |+|..-|.
T Consensus 53 ~wl~d~~~~~rv~~~A~~VlDLGtGNG~--~L~~L~~egf--~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 53 DWLKDLIVISRVSKQADRVLDLGTGNGH--LLFQLAKEGF--QSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHhhhhhhhhcccccceeeccCCchH--HHHHHHHhcC--CCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 34444444 4567799999999997 4445665432 356 555678888888899886 77887 99988777
Q ss_pred CchhhcCCC-CCccEEE---------EeCC--ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 104 DDEELMDGL-VDIDFLV---------VDSR--RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 104 ~~~e~L~~l-~~fDfVF---------IDa~--K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.+- ..+ .+||+|+ +-.+ ++.-.-|++.+ +++++||+.|+--.-|--
T Consensus 128 --~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~ 186 (227)
T KOG1271|consen 128 --TDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK 186 (227)
T ss_pred --cCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH
Confidence 332 112 2566665 3222 23334466667 666679999886655533
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0089 Score=54.68 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=70.1
Q ss_pred cccChhhhHHHHHHhhhccCC-----------CCC--HHHHHHHHHHHHhc-----------CCCeEEEeCcCcchHHHH
Q 027826 3 LVWSPETASKAYIDTVKSCEL-----------SHE--SGVAELVSAMAAGW-----------DARLIVETWSHGGATATS 58 (218)
Q Consensus 3 ~~~~~~~a~~ayl~~l~~~~~-----------~i~--p~~g~fL~~L~~~~-----------~ak~ILEiGt~~GyiGsa 58 (218)
+.|+.+.|+.++=.+|....= .++ |.-..++..+..+. ...+|||||||+|.|...
T Consensus 52 idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~l 131 (321)
T PRK11727 52 IDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPL 131 (321)
T ss_pred eeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHH
Confidence 568888888888777766421 122 33456665555442 357999999999974333
Q ss_pred HHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhC-CCc--eEEEE-cCCCchhhcCCC----CCccEEEEe
Q 027826 59 VGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEA-GFS--PQVIT-GEADDEELMDGL----VDIDFLVVD 121 (218)
Q Consensus 59 iglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~a-gl~--i~~i~-GdA~~~e~L~~l----~~fDfVFID 121 (218)
|+... .+.+ ++-+|.++...+.|+.+ ... +++ |+++. .+. .+.+..+ +.||||+--
T Consensus 132 --La~~~--~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~--~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 132 --IGVHE--YGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS--KAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred --HHhhC--CCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch--hhhhhcccccCCceEEEEeC
Confidence 33332 2457 55557888887777665 455 576 88864 454 4444432 379999853
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=55.40 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
.+++...+-+-..+...+..+|||||||+|. .+..|+... .+ ++.+|.++.+...++......-.++++++|+
T Consensus 12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~--lt~~L~~~~----~~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~ 84 (253)
T TIGR00755 12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGA--LTEPLLKRA----KK-VTAIEIDPRLAEILRKLLSLYERLEVIEGDA 84 (253)
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCH--HHHHHHHhC----Cc-EEEEECCHHHHHHHHHHhCcCCcEEEEECch
Confidence 4556666555555566678899999999999 666666543 34 6667888887766654332211289999999
Q ss_pred Cchh
Q 027826 104 DDEE 107 (218)
Q Consensus 104 ~~~e 107 (218)
.+
T Consensus 85 --~~ 86 (253)
T TIGR00755 85 --LK 86 (253)
T ss_pred --hc
Confidence 65
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0061 Score=58.07 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=67.4
Q ss_pred HHHHHHHHHhc----CCCeEEEeCcCcchHHHHHHHHHhc-CCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEc
Q 027826 30 AELVSAMAAGW----DARLIVETWSHGGATATSVGLAVAS-RHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITG 101 (218)
Q Consensus 30 g~fL~~L~~~~----~ak~ILEiGt~~GyiGsaiglA~a~-~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~G 101 (218)
.+.|.-..+.. +.+.|+.||+|+|-+ +..+ +.|+ ...+...|+.+|.++......+.. ++.|++ |+++.|
T Consensus 171 ~~al~D~~~~~~~~~~~~vVldVGAGrGpL-~~~a-l~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~ 248 (448)
T PF05185_consen 171 EEALKDRVRKNSYSSKDKVVLDVGAGRGPL-SMFA-LQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHG 248 (448)
T ss_dssp HHHHHHHHTTS-SEETT-EEEEES-TTSHH-HHHH-HHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES
T ss_pred HHHHHhhhhhccccccceEEEEeCCCccHH-HHHH-HHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeC
Confidence 34444444444 357899999999973 2212 2222 111222377888888665555544 677775 999999
Q ss_pred CCCchhh-cCCCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 102 EADDEEL-MDGLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 102 dA~~~e~-L~~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|. .++ +| .+.|+|.-- ++.+.-++.++.+ +.+++||+++=...
T Consensus 249 d~--r~v~lp--ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 249 DM--REVELP--EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp -T--TTSCHS--S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred cc--cCCCCC--CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 99 653 22 278888643 2456778888887 66666899875544
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.01 Score=53.13 Aligned_cols=96 Identities=11% Similarity=0.156 Sum_probs=67.9
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCC----CCcEEEEEEcCCccHHHHHHHH-hhCCCc----eEEEEcCCCchhhcCCCC
Q 027826 43 RLIVETWSHGGATATSVGLAVASRH----TGGRHVCLVPDERSRSEYVHAL-GEAGFS----PQVITGEADDEELMDGLV 113 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~----~~G~vitt~e~~~~~~~~a~~~-~~agl~----i~~i~GdA~~~e~L~~l~ 113 (218)
-++|++++|||- .|.++...+.. .+++ |++.+.+|++...++.= .+-++. +++++||| |.|| ++
T Consensus 102 m~~lDvaGGTGD--iaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA---E~Lp-Fd 174 (296)
T KOG1540|consen 102 MKVLDVAGGTGD--IAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA---EDLP-FD 174 (296)
T ss_pred CeEEEecCCcch--hHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc---ccCC-CC
Confidence 589999999999 88888887753 2356 78889999886655432 245665 78899999 4466 43
Q ss_pred --CccEEEEeCCccCc---HHHHHHh-cCCCCCeEEEE
Q 027826 114 --DIDFLVVDSRRKDF---ARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 114 --~fDfVFIDa~K~~Y---~~~~~~~-~L~~~GgvIV~ 145 (218)
.||..-|=---.+. ++-++.+ ++++|||.+.+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 78887766544443 3445555 78888998764
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0056 Score=51.64 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC-C
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA-D 104 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA-~ 104 (218)
++-.++-+...+--.+...|||+|.++|++.-+| |+...++ .. ++.+|.+++....-.. .. -.+++++||| +
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTGV~TkaI-L~~gv~~--~~-L~~iE~~~dF~~~L~~--~~-p~~~ii~gda~~ 105 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTGVITKAI-LSRGVRP--ES-LTAIEYSPDFVCHLNQ--LY-PGVNIINGDAFD 105 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCccHhHHHH-HhcCCCc--cc-eEEEEeCHHHHHHHHH--hC-CCccccccchhh
Confidence 4555565555555667779999999999954443 6665554 34 7788998865433221 11 1167999999 2
Q ss_pred chhhcCCCC--CccEEEEeCCc-----cCcHHHHHHh-cCCCCCeEEE
Q 027826 105 DEELMDGLV--DIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 105 ~~e~L~~l~--~fDfVFIDa~K-----~~Y~~~~~~~-~L~~~GgvIV 144 (218)
+..+|..-. .||.|+----- +.-.++++.+ ..++.||.+|
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLV 153 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEE
Confidence 222454432 79998764433 3345667776 3445588776
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=51.98 Aligned_cols=97 Identities=5% Similarity=-0.080 Sum_probs=66.0
Q ss_pred HHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchhhc
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEELM 109 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e~L 109 (218)
|+..-+||+||=||.|-|- ++ -+.++.+ .+ |+-+|.|++..+.++.+ - ..++. ++++.. . .
T Consensus 67 l~~h~~pk~VLIiGGGDGg--~~---REvLkh~-~~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~-----~ 133 (262)
T PRK00536 67 GCTKKELKEVLIVDGFDLE--LA---HQLFKYD-TH-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L-----L 133 (262)
T ss_pred HhhCCCCCeEEEEcCCchH--HH---HHHHCcC-Ce-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-----h
Confidence 3455789999999999886 33 5555654 36 77789999888777653 1 23454 676652 2 2
Q ss_pred CCC-CCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeC
Q 027826 110 DGL-VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 110 ~~l-~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DN 147 (218)
..- ++||.|.+|.- .=+++++.+ +.+++||++|+=.
T Consensus 134 ~~~~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 134 DLDIKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hccCCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence 222 48999999964 226777788 5555699998844
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0087 Score=53.78 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=50.6
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
......+|||+|||+|. -++.++.... +.+ |+.+|.++.+.+.++... . .++++.+|+ .+.... ..||+
T Consensus 61 ~~~~~grVLDLGcGsGi--lsl~la~r~~--~~~-V~gVDisp~al~~Ar~n~--~-~v~~v~~D~--~e~~~~-~kFDl 129 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGR--LSFCMLHRCK--PEK-IVCVELNPEFARIGKRLL--P-EAEWITSDV--FEFESN-EKFDV 129 (279)
T ss_pred ccccCCeEEEcCCCCCH--HHHHHHHhCC--CCE-EEEEECCHHHHHHHHHhC--c-CCEEEECch--hhhccc-CCCcE
Confidence 33445799999999997 4444444322 346 666788887776665431 1 388999999 876532 38999
Q ss_pred EEEeCC
Q 027826 118 LVVDSR 123 (218)
Q Consensus 118 VFIDa~ 123 (218)
|+.+..
T Consensus 130 IIsNPP 135 (279)
T PHA03411 130 VISNPP 135 (279)
T ss_pred EEEcCC
Confidence 999643
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0045 Score=53.09 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=66.1
Q ss_pred HHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
....-..+.++||+||.+.|. .++.++++.+. -+ ++..+. |+..+.++. .-.|+++.||. .+.+|.
T Consensus 93 ~~~~d~~~~~~vvDvGGG~G~--~~~~l~~~~P~--l~-~~v~Dl-p~v~~~~~~----~~rv~~~~gd~--f~~~P~-- 158 (241)
T PF00891_consen 93 LEAFDFSGFKTVVDVGGGSGH--FAIALARAYPN--LR-ATVFDL-PEVIEQAKE----ADRVEFVPGDF--FDPLPV-- 158 (241)
T ss_dssp HHHSTTTTSSEEEEET-TTSH--HHHHHHHHSTT--SE-EEEEE--HHHHCCHHH----TTTEEEEES-T--TTCCSS--
T ss_pred hccccccCccEEEeccCcchH--HHHHHHHHCCC--Cc-ceeecc-Hhhhhcccc----ccccccccccH--Hhhhcc--
Confidence 333445678899999999999 77888888764 56 555555 444433333 11299999999 766664
Q ss_pred CccEEEEeCCcc-----CcHHHHHHh--cCCCC--CeEEEEeCCCCCC
Q 027826 114 DIDFLVVDSRRK-----DFARVLRLA--NLSSR--GAVLVCKNAYSRN 152 (218)
Q Consensus 114 ~fDfVFIDa~K~-----~Y~~~~~~~--~L~~~--GgvIV~DNvl~~G 152 (218)
+|++++=.--+ +-...++.+ -|.|. |-|+|.|.++-..
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 99999954444 444566666 45442 4666666666444
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.03 Score=48.33 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCC--cEEEEEEcCCcc-HHHHHHHHhhCCCc-eEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTG--GRHVCLVPDERS-RSEYVHALGEAGFS-PQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~--G~vitt~e~~~~-~~~~a~~~~~agl~-i~~i 99 (218)
+..|.-.-..+.|+-..+|..|+|+|+-.|= |+|++|.-+.+-| -+++ +++.+-. ..-++.. .. |.++
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GG--Sal~fA~~m~s~Gq~~kvl-~vdIdi~~~~p~a~e-----~p~i~f~ 123 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGG--SALFFANMMISIGQPFKVL-GVDIDIKPLDPAARE-----VPDILFI 123 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeeccccCc--hhhhhhHhHHhcCCCceEE-EEecccCcCChhhhc-----CCCeEEE
Confidence 5678888999999999999999999999986 9999887665533 3533 3333321 1122221 34 9999
Q ss_pred EcCCCchhhcCC---C---CCccEEEEeCCc--cCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 100 TGEADDEELMDG---L---VDIDFLVVDSRR--KDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~~---l---~~fDfVFIDa~K--~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|+.++.++..+ + .+-=||.+|++- ++-+.-++++ +|+..|.-+|+-+..-.+
T Consensus 124 egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 124 EGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred eCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 999855544443 2 256689999984 2344455555 666658887776665433
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0089 Score=53.19 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCC
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA 103 (218)
+++...+-+-..+....-.+|||||.|.|- -|.-|++. +.+ |+.+|.|+.+...-+.... ... +++++|||
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~Ga--LT~~Ll~~----~~~-v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~Da 85 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGA--LTEPLLER----AAR-VTAIEIDRRLAEVLKERFA-PYDNLTVINGDA 85 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCH--HHHHHHhh----cCe-EEEEEeCHHHHHHHHHhcc-cccceEEEeCch
Confidence 344443333333333344579999999998 44445543 346 7788999876554433222 223 89999999
Q ss_pred Cchh-hcCCCCCccEEEEe
Q 027826 104 DDEE-LMDGLVDIDFLVVD 121 (218)
Q Consensus 104 ~~~e-~L~~l~~fDfVFID 121 (218)
++ -++++..++.|+--
T Consensus 86 --Lk~d~~~l~~~~~vVaN 102 (259)
T COG0030 86 --LKFDFPSLAQPYKVVAN 102 (259)
T ss_pred --hcCcchhhcCCCEEEEc
Confidence 55 23333245555533
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=57.45 Aligned_cols=102 Identities=20% Similarity=0.098 Sum_probs=64.3
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhc-------C-CCCcEE-EEEEcCCcc-HHHHHH-------------HHh------h
Q 027826 41 DARLIVETWSHGGATATSVGLAVAS-------R-HTGGRH-VCLVPDERS-RSEYVH-------------ALG------E 91 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~-------~-~~~G~v-itt~e~~~~-~~~~a~-------------~~~------~ 91 (218)
+.=+|+|+|=|+|| -++....+. + ....++ +.++|..|- ..+.++ .+. .
T Consensus 57 ~~~~i~e~gfG~G~--N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 134 (662)
T PRK01747 57 RRFVIAETGFGTGL--NFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLL 134 (662)
T ss_pred CcEEEEecCcchHH--HHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccC
Confidence 34689999999999 555533322 1 112343 566776442 122222 221 1
Q ss_pred CCC----------ceEEEEcCCCchhhcCCCC-CccEEEEeCCcc------CcHHHHHHh-cCCCCCeEEEEe
Q 027826 92 AGF----------SPQVITGEADDEELMDGLV-DIDFLVVDSRRK------DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 92 agl----------~i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K~------~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
.|+ ..+++.||| .+.|+++. .+|.+|+|+--. --+++|..+ ++.++||.+++-
T Consensus 135 ~g~~~~~~~~~~~~l~l~~gd~--~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 135 PGCHRLLFDDGRVTLDLWFGDA--NELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred CCceEEEecCCcEEEEEEecCH--HHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 233 255788999 99999996 799999997533 235577776 777779999865
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.022 Score=55.01 Aligned_cols=98 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCCC--Ccc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGLV--DID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l~--~fD 116 (218)
.+...+||||||.|= ..+.+|...++ -.+|-++-..+....+.+...+.|+. +.++.+|+ ..+...+. ++|
T Consensus 346 ~~~p~~lEIG~G~G~--~~~~~A~~~p~--~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~--~~~~~~~~~~sv~ 419 (506)
T PRK01544 346 EKRKVFLEIGFGMGE--HFINQAKMNPD--ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL--DLILNDLPNNSLD 419 (506)
T ss_pred CCCceEEEECCCchH--HHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHhcCccccc
Confidence 357889999999997 88888887664 34455433333233344445678888 88998888 65555553 567
Q ss_pred EEEE---eCC--cc------CcHHHHHHh-cCCCCCeEE
Q 027826 117 FLVV---DSR--RK------DFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 117 fVFI---Da~--K~------~Y~~~~~~~-~L~~~GgvI 143 (218)
-||| |-| |. -.+++++.+ .++++||.|
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i 458 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNL 458 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEE
Confidence 6666 666 22 256788887 555558865
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.019 Score=48.99 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEcCCCchhhcCCCCCcc
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~GdA~~~e~L~~l~~fD 116 (218)
+.++++-++|||||+|++-|. |+....+ +...++| +.||+..++-. .....+..++++.-|- ...|.. ++.|
T Consensus 40 ~~~~~~i~lEIG~GSGvvstf--L~~~i~~-~~~~lat-DiNp~A~~~Tl~TA~~n~~~~~~V~tdl--~~~l~~-~~VD 112 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTF--LASVIGP-QALYLAT-DINPEALEATLETARCNRVHIDVVRTDL--LSGLRN-ESVD 112 (209)
T ss_pred hhcCceeEEEecCCcchHHHH--HHHhcCC-CceEEEe-cCCHHHHHHHHHHHHhcCCccceeehhH--Hhhhcc-CCcc
Confidence 344599999999999995444 6666553 4444565 67776655433 2334444477777777 776666 6888
Q ss_pred EEEEe
Q 027826 117 FLVVD 121 (218)
Q Consensus 117 fVFID 121 (218)
.+...
T Consensus 113 vLvfN 117 (209)
T KOG3191|consen 113 VLVFN 117 (209)
T ss_pred EEEEC
Confidence 77654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.028 Score=48.51 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCC----------
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGF---------- 94 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl---------- 94 (218)
+.|.--+++.. .......+||-.|||.|| -.++||.. |.-|+-+|..+...+.+ +.+.++
T Consensus 22 ~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~--D~~~La~~-----G~~VvGvDls~~Ai~~~--~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 22 PNPALVEYLDS-LALKPGGRVLVPGCGKGY--DMLWLAEQ-----GHDVVGVDLSPTAIEQA--FEENNLEPTVTSVGGF 91 (218)
T ss_dssp STHHHHHHHHH-HTTSTSEEEEETTTTTSC--HHHHHHHT-----TEEEEEEES-HHHHHHH--HHHCTTEEECTTCTTE
T ss_pred CCHHHHHHHHh-cCCCCCCeEEEeCCCChH--HHHHHHHC-----CCeEEEEecCHHHHHHH--HHHhccCCCcccccce
Confidence 45555555555 234555699999999999 89888862 44477788887543332 222222
Q ss_pred -----c-eEEEEcCCCchhhcCCC-CCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEE
Q 027826 95 -----S-PQVITGEADDEELMDGL-VDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 95 -----~-i~~i~GdA~~~e~L~~l-~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
. |++.+||. .+.=+.. .+||+|+== -..+.=.+|.+.+ .|+++||.+
T Consensus 92 ~~~~~~~i~~~~gDf--F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 92 KRYQAGRITIYCGDF--FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp EEETTSSEEEEES-T--TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred eeecCCceEEEEccc--ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 1 68999999 8854443 389998622 2356778899998 777668883
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.033 Score=48.60 Aligned_cols=97 Identities=7% Similarity=-0.014 Sum_probs=65.7
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh----------------CCCceEEEEcCCCc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE----------------AGFSPQVITGEADD 105 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~----------------agl~i~~i~GdA~~ 105 (218)
..+||-.|||.|+ -+++||.. |-+ |+-+|..+...+.+ +++ .+..|++++||.
T Consensus 44 ~~rvLvPgCGkg~--D~~~LA~~----G~~-V~GvDlS~~Ai~~~--~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~-- 112 (226)
T PRK13256 44 SSVCLIPMCGCSI--DMLFFLSK----GVK-VIGIELSEKAVLSF--FSQNTINYEVIHGNDYKLYKGDDIEIYVADI-- 112 (226)
T ss_pred CCeEEEeCCCChH--HHHHHHhC----CCc-EEEEecCHHHHHHH--HHHcCCCcceecccccceeccCceEEEEccC--
Confidence 3799999999999 99999863 334 77788887543332 222 233489999999
Q ss_pred hhhcC--C-CCCccEEEEeC-----CccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 106 EELMD--G-LVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 106 ~e~L~--~-l~~fDfVFIDa-----~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
.+.=+ . +.+||+|+-=+ ..+.=.+|.+.+ .++++||.++.=..-
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 77422 1 34788865433 345566788888 666668887765543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.022 Score=48.70 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEE
Q 027826 43 RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVV 120 (218)
Q Consensus 43 k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFI 120 (218)
.+||++|||.|- |...+.+..+.-..-+|.+++..... .+-| +.+++||+ .+-|+.++ +||.|.+
T Consensus 15 srVLDLGCGdG~------LL~~L~~~k~v~g~GvEid~~~v~~c---v~rG--v~Viq~Dl--d~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 15 SRVLDLGCGDGE------LLAYLKDEKQVDGYGVEIDPDNVAAC---VARG--VSVIQGDL--DEGLADFPDQSFDYVIL 81 (193)
T ss_pred CEEEecCCCchH------HHHHHHHhcCCeEEEEecCHHHHHHH---HHcC--CCEEECCH--HHhHhhCCCCCccEEeh
Confidence 699999999886 22223222222245678887543222 2344 57999999 88898885 9999998
Q ss_pred eCCccCcHHHHHH----h-cCCCCCeEEEEeCC
Q 027826 121 DSRRKDFARVLRL----A-NLSSRGAVLVCKNA 148 (218)
Q Consensus 121 Da~K~~Y~~~~~~----~-~L~~~GgvIV~DNv 148 (218)
--.- |....=+. + +..+ -+||-+-|.
T Consensus 82 sqtL-Q~~~~P~~vL~EmlRVgr-~~IVsFPNF 112 (193)
T PF07021_consen 82 SQTL-QAVRRPDEVLEEMLRVGR-RAIVSFPNF 112 (193)
T ss_pred HhHH-HhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence 6542 22222222 2 4545 689999997
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.024 Score=45.78 Aligned_cols=94 Identities=16% Similarity=0.058 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchh
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e 107 (218)
+.+++|..-....+.++|||||||+|. + + |..+.+.|-. |+.++.+++..+.++ +.+ ++++.+|- .+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~--~-v--A~~L~~~G~~-ViaIDi~~~aV~~a~---~~~--~~~v~dDl--f~ 69 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYF--K-V--AKKLKESGFD-VIVIDINEKAVEKAK---KLG--LNAFVDDL--FN 69 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCH--H-H--HHHHHHCCCE-EEEEECCHHHHHHHH---HhC--CeEEECcC--CC
Confidence 356666665555556889999999885 2 2 2222232445 666788886544443 223 68888888 54
Q ss_pred hcCC-CCCccEEEE-eCCccCcHHHHHHh
Q 027826 108 LMDG-LVDIDFLVV-DSRRKDFARVLRLA 134 (218)
Q Consensus 108 ~L~~-l~~fDfVFI-Da~K~~Y~~~~~~~ 134 (218)
-=.. ...+|+|.- =...+.-+..++++
T Consensus 70 p~~~~y~~a~liysirpp~el~~~~~~la 98 (134)
T PRK04148 70 PNLEIYKNAKLIYSIRPPRDLQPFILELA 98 (134)
T ss_pred CCHHHHhcCCEEEEeCCCHHHHHHHHHHH
Confidence 2222 248888874 33334455555555
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.028 Score=50.85 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=59.3
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc-eEEEEcCCCchhhcCCC--C--Ccc
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEELMDGL--V--DID 116 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~-i~~i~GdA~~~e~L~~l--~--~fD 116 (218)
...+|+.++|+|. =|..++...++ +|+ |+.++.++++...++..... .. +++++++. .+....+ + ++|
T Consensus 20 g~~vlD~TlG~GG--hS~~il~~~~~-~g~-VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f--~~l~~~l~~~~~~vD 92 (296)
T PRK00050 20 DGIYVDGTFGGGG--HSRAILERLGP-KGR-LIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNF--SNLKEVLAEGLGKVD 92 (296)
T ss_pred CCEEEEeCcCChH--HHHHHHHhCCC-CCE-EEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCH--HHHHHHHHcCCCccC
Confidence 3589999999998 88888888753 688 55678889887776643222 34 99999999 7654333 2 799
Q ss_pred EEEEeCCccCcH
Q 027826 117 FLVVDSRRKDFA 128 (218)
Q Consensus 117 fVFIDa~K~~Y~ 128 (218)
.|++|-.-..|+
T Consensus 93 gIl~DLGvSs~Q 104 (296)
T PRK00050 93 GILLDLGVSSPQ 104 (296)
T ss_pred EEEECCCccccc
Confidence 999998765553
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.02 Score=50.68 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=55.7
Q ss_pred HHHHhcC---CC--eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhC------C--C-c-eEE
Q 027826 35 AMAAGWD---AR--LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEA------G--F-S-PQV 98 (218)
Q Consensus 35 ~L~~~~~---ak--~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~a------g--l-~-i~~ 98 (218)
.|+++.+ -. +||+.-.|.|- -+ +-.|.. |++ |+.+|.++.....- ..+.++ + + . +++
T Consensus 77 ~l~kAvglk~g~~p~VLD~TAGlG~--Da--~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 77 AVAKAVGIKGDYLPDVVDATAGLGR--DA--FVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred HHHHHhCCCCCCCCEEEECCCCccH--HH--HHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 4555553 33 79997777776 33 222222 678 88889999766544 455553 3 2 3 899
Q ss_pred EEcCCCchhhcCCCC-CccEEEEeCC
Q 027826 99 ITGEADDEELMDGLV-DIDFLVVDSR 123 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-~fDfVFIDa~ 123 (218)
+++|+ .+.|+++. +||+||+|--
T Consensus 150 ~~~da--~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 150 IHASS--LTALTDITPRPQVVYLDPM 173 (250)
T ss_pred EeCcH--HHHHhhCCCCCcEEEECCC
Confidence 99999 99999875 8999999964
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.06 Score=46.39 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcC-CC-eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccH-HHHHHHHhhCCCc-----eEEEE
Q 027826 29 VAELVSAMAAGWD-AR-LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSR-SEYVHALGEAGFS-----PQVIT 100 (218)
Q Consensus 29 ~g~fL~~L~~~~~-ak-~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~-~~~a~~~~~agl~-----i~~i~ 100 (218)
..-.|..|.+... .. +|||||||+|- =+..+|.+++. =+--.+ |.+++. ..+.....++|+. +.+=.
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGq--Ha~~FA~~lP~--l~WqPS-D~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv 85 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQ--HAVYFAQALPH--LTWQPS-DPDDNLRPSIRAWIAEAGLPNVRPPLALDV 85 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccH--HHHHHHHHCCC--CEEcCC-CCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence 3445555555433 33 59999999998 88889999874 232244 344444 3333334566665 33211
Q ss_pred cCCCchhhcC-----CCCCccEEEEe-----CCccCcHHHHHHh-cCCCCCeEEEEeCCCCC
Q 027826 101 GEADDEELMD-----GLVDIDFLVVD-----SRRKDFARVLRLA-NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 101 GdA~~~e~L~-----~l~~fDfVFID-----a~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~ 151 (218)
.+. -.... .-.+||.||.= +..+.-..+|+.+ +++++||+++.-==+..
T Consensus 86 ~~~--~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 86 SAP--PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred CCC--CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 111 11111 12389999853 2234556778887 67767999988766533
|
The function of this family is unknown. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.031 Score=47.82 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=60.8
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc--eEEEEcCCCchhhcCCCCCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~--i~~i~GdA~~~e~L~~l~~f 115 (218)
...-..|+.+-||.|| -+|-+|+-.. ..+ |...|.+|+..+..+ +....+++ |+++.||+ .+.++ -..+
T Consensus 99 v~~~e~VlD~faGIG~--f~l~~ak~~~--~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~--~~~~~-~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGP--FSLPIAKHGK--AKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA--REFLP-EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTT--THHHHHHHT---SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G--GG----TT-E
T ss_pred CCcceEEEEccCCccH--HHHHHhhhcC--ccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH--HHhcC-cccc
Confidence 3456899999999999 7766666322 345 666789998777665 44566777 99999999 99888 4489
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEE
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvI 143 (218)
|=|.++-- ..-.++++.+ .++++||+|
T Consensus 171 drvim~lp-~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 171 DRVIMNLP-ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEE--T-SSGGGGHHHHHHHEEEEEEE
T ss_pred CEEEECCh-HHHHHHHHHHHHHhcCCcEE
Confidence 99999875 4444688887 666668886
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.014 Score=52.19 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=72.1
Q ss_pred cccChhhhHHHHHHhhhccCCC-CCHHHHHHHHHHHHhcCC-------CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEE
Q 027826 3 LVWSPETASKAYIDTVKSCELS-HESGVAELVSAMAAGWDA-------RLIVETWSHGGATATSVGLAVASRHTGGRHVC 74 (218)
Q Consensus 3 ~~~~~~~a~~ayl~~l~~~~~~-i~p~~g~fL~~L~~~~~a-------k~ILEiGt~~GyiGsaiglA~a~~~~~G~vit 74 (218)
-.|-++.-...+|+.+...+.. |.. .++...-. +.| ++||++|||+|. -+.-||+- |.. |+
T Consensus 47 ~~wwd~~g~~~~Lh~mn~~Rl~fi~d---~~~~~v~~-~~p~~k~~~g~~ilDvGCGgGL--LSepLArl----ga~-V~ 115 (282)
T KOG1270|consen 47 FTWWDEEGVRHPLHSMNQTRLPFIRD---DLRNRVNN-HAPGSKPLLGMKILDVGCGGGL--LSEPLARL----GAQ-VT 115 (282)
T ss_pred ccccccccchhhhhhccchhhhHHHH---HHHhcccc-cCCCccccCCceEEEeccCccc--cchhhHhh----CCe-eE
Confidence 3577777777777776654431 110 01111100 122 569999999999 56566652 445 77
Q ss_pred EEcCCccHHHHHHHHhh------CCCc--eEEEEcCCCchhhcCCCCCccEEEEeCCccCc---HHHHHHh-cCCCCCeE
Q 027826 75 LVPDERSRSEYVHALGE------AGFS--PQVITGEADDEELMDGLVDIDFLVVDSRRKDF---ARVLRLA-NLSSRGAV 142 (218)
Q Consensus 75 t~e~~~~~~~~a~~~~~------agl~--i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y---~~~~~~~-~L~~~Ggv 142 (218)
-++..+++.+.|+..+. .++. +++.+.++ ...- ++||-|..==--++| +++++-+ .+++|||.
T Consensus 116 GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~--E~~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 116 GIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV--EGLT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred eecccHHHHHHHHHhhhcCchhccccceeeehhhcch--hhcc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCc
Confidence 77888888877765542 2222 44555555 2222 259988765444555 3445554 44444665
Q ss_pred EEEeCC
Q 027826 143 LVCKNA 148 (218)
Q Consensus 143 IV~DNv 148 (218)
++.-.+
T Consensus 191 lfitti 196 (282)
T KOG1270|consen 191 LFITTI 196 (282)
T ss_pred eEeeeh
Confidence 555443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.057 Score=47.42 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA 103 (218)
.+++...+-+...+.......|||||.|.|. -|-.|+... .+ ++.+|.++.....-+......-.++++.+|+
T Consensus 13 L~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~--lT~~L~~~~----~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~ 85 (262)
T PF00398_consen 13 LVDPNIADKIVDALDLSEGDTVLEIGPGPGA--LTRELLKRG----KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDF 85 (262)
T ss_dssp EEHHHHHHHHHHHHTCGTTSEEEEESSTTSC--CHHHHHHHS----SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-T
T ss_pred eCCHHHHHHHHHhcCCCCCCEEEEeCCCCcc--chhhHhccc----Cc-ceeecCcHhHHHHHHHHhhhcccceeeecch
Confidence 4567777777777777788999999999999 444465543 46 7778999866544333222122299999999
Q ss_pred Cchh
Q 027826 104 DDEE 107 (218)
Q Consensus 104 ~~~e 107 (218)
++
T Consensus 86 --l~ 87 (262)
T PF00398_consen 86 --LK 87 (262)
T ss_dssp --TT
T ss_pred --hc
Confidence 64
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.15 Score=47.14 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=64.3
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchh-hcCCCCC
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEE-LMDGLVD 114 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e-~L~~l~~ 114 (218)
+.+-|.||.+||++|. -++.-|+| |.+.|..+|... .++.|+.+ +..+++ |+++.|.. .+ .|| .++
T Consensus 58 lf~dK~VlDVGcGtGI--LS~F~akA----GA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkv--Edi~LP-~eK 127 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGI--LSMFAAKA----GARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKV--EDIELP-VEK 127 (346)
T ss_pred hcCCCEEEEcCCCccH--HHHHHHHh----CcceEEEEechH-HHHHHHHHHHhcCccceEEEeecce--EEEecC-ccc
Confidence 6788999999999997 44333333 445577777754 55666554 577787 99999999 66 455 558
Q ss_pred ccEEEEeCCccCcHHHHHHh---------cCCCCCeEEEEeCC
Q 027826 115 IDFLVVDSRRKDFARVLRLA---------NLSSRGAVLVCKNA 148 (218)
Q Consensus 115 fDfVFIDa~K~~Y~~~~~~~---------~L~~~GgvIV~DNv 148 (218)
.|.|. +.--.|--++|-. +-+++||+|.=|-.
T Consensus 128 VDiIv--SEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a 168 (346)
T KOG1499|consen 128 VDIIV--SEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA 168 (346)
T ss_pred eeEEe--ehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence 88764 3334454444432 22345999866554
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.064 Score=47.54 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCC-eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-h--hCCCceEEEEcCCCc
Q 027826 30 AELVSAMAAGWDAR-LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G--EAGFSPQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~ak-~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~--~agl~i~~i~GdA~~ 105 (218)
..++..++..+.-. .++|+|||+|- +++++|.-.. +||.| +.++.+...++.. . .......+...+-
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gq--a~~~iae~~k----~VIat-D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~-- 91 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQ--AARGIAEHYK----EVIAT-DVSEAMLKVAKKHPPVTYCHTPSTMSSDEM-- 91 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCc--chHHHHHhhh----hheee-cCCHHHHHHhhcCCCcccccCCcccccccc--
Confidence 56777777776555 99999999998 9999998633 45665 5566666555422 1 1111133332222
Q ss_pred hhhcCCCCCccEEEEeCCcc--CcHHHHHHh--cCCCCCeEEEEeC
Q 027826 106 EELMDGLVDIDFLVVDSRRK--DFARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K~--~Y~~~~~~~--~L~~~GgvIV~DN 147 (218)
.+++..=++.|+|..=-.-+ +-.+++..+ .|+++||+|++=|
T Consensus 92 v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 92 VDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred ccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEE
Confidence 33332213899986532111 234455555 5678798998733
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=48.21 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHH---Hh---hCCCc---eEEEEcCCCchhh
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHA---LG---EAGFS---PQVITGEADDEEL 108 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~---~~---~agl~---i~~i~GdA~~~e~ 108 (218)
..+++++|=+|.+-|. ++-+-++-+ -++ |+-+|.||++.+.++. +. +.-++ +.++..|| .+.
T Consensus 287 ~~~a~~vLvlGGGDGL-----AlRellkyP~~~q-I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA--f~w 358 (508)
T COG4262 287 VRGARSVLVLGGGDGL-----ALRELLKYPQVEQ-ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA--FQW 358 (508)
T ss_pred ccccceEEEEcCCchH-----HHHHHHhCCCcce-EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH--HHH
Confidence 4689999999998886 223333333 345 8899999999887752 22 22222 88999999 999
Q ss_pred cCCCC-CccEEEEeCCcc-------Cc-HHHHHHh--cCCCCCeEEEEe
Q 027826 109 MDGLV-DIDFLVVDSRRK-------DF-ARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~fDfVFIDa~K~-------~Y-~~~~~~~--~L~~~GgvIV~D 146 (218)
|++-. .||+|.+|---. .| .+++.++ +|.. +|++|+-
T Consensus 359 lr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e-~Gl~VvQ 406 (508)
T COG4262 359 LRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAE-TGLMVVQ 406 (508)
T ss_pred HHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCc-CceEEEe
Confidence 99865 999999995432 23 3455555 5555 8888764
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.21 Score=39.69 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh----cCCCeEEEeCcCcchHHHHHHHHHhcC--CCCcEEEEEEcCCccHHHHHHHH-hhCC--Cc--eE
Q 027826 29 VAELVSAMAAG----WDARLIVETWSHGGATATSVGLAVASR--HTGGRHVCLVPDERSRSEYVHAL-GEAG--FS--PQ 97 (218)
Q Consensus 29 ~g~fL~~L~~~----~~ak~ILEiGt~~GyiGsaiglA~a~~--~~~G~vitt~e~~~~~~~~a~~~-~~ag--l~--i~ 97 (218)
.++++..++.. .+...|+++|+|-||++.. ||..+. ..+-+ |+.+|.++...+.+... .+.+ +. .+
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~--La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRA--LAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLS 85 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHH--HHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence 45666666666 8899999999999994444 444221 22446 67778888776665544 3444 32 45
Q ss_pred EEEcCC
Q 027826 98 VITGEA 103 (218)
Q Consensus 98 ~i~GdA 103 (218)
+..++.
T Consensus 86 ~~~~~~ 91 (141)
T PF13679_consen 86 FIQGDI 91 (141)
T ss_pred hhccch
Confidence 555544
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.064 Score=47.59 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=56.5
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCc---eEEEEcCCCchhhcCCC--CCc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS---PQVITGEADDEELMDGL--VDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~---i~~i~GdA~~~e~L~~l--~~f 115 (218)
.|.+|||||||.|= |..=+.+-.+.++=+ |..-+-.|...+.-+.. .++. +.--.-|.+.-+..... .++
T Consensus 71 ~~~~ilEvGCGvGN--tvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~--~~~~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 71 SAETILEVGCGVGN--TVFPLLKTSPNNRLK-VYACDFSPRAIELVKKS--SGYDESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred ChhhheeeccCCCc--ccchhhhcCCCCCeE-EEEcCCChHHHHHHHhc--cccchhhhcccceeccchhccCCCCcCcc
Confidence 34489999999886 544355544443345 44446666444443332 2322 22222222111112222 256
Q ss_pred cE-----EEEeCCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 116 DF-----LVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 116 Df-----VFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+ ||.=-.++.-+..++-+ +|++|||.|++=+-
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 63 44455578888888888 77777999887653
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.3 Score=45.22 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCc--eEEEEcCCCc
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADD 105 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~--i~~i~GdA~~ 105 (218)
+.+=..++-....=..||..=+|.|| -+|-+|.... .+ |+..|.||+.....+. +...+++ |+.++||+
T Consensus 176 ~~ER~Rva~~v~~GE~V~DmFAGVGp--fsi~~Ak~g~---~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~-- 247 (341)
T COG2520 176 STERARVAELVKEGETVLDMFAGVGP--FSIPIAKKGR---PK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA-- 247 (341)
T ss_pred hHHHHHHHhhhcCCCEEEEccCCccc--chhhhhhcCC---ce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH--
Confidence 33444444444556789998788888 6766666533 24 7778999998777654 4566666 89999999
Q ss_pred hhhcCCCCCccEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 106 EELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 106 ~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
.++++++..+|=|++---+.. .+|++.+ .++++||+|-.....-..
T Consensus 248 rev~~~~~~aDrIim~~p~~a-~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 248 REVAPELGVADRIIMGLPKSA-HEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred HHhhhccccCCEEEeCCCCcc-hhhHHHHHHHhhcCcEEEEEeccchh
Confidence 999999889999999887544 3466666 555559999888876544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=47.51 Aligned_cols=102 Identities=21% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHH-HhcCC--CeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEE
Q 027826 24 SHESGVAELVSAMA-AGWDA--RLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQV 98 (218)
Q Consensus 24 ~i~p~~g~fL~~L~-~~~~a--k~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~ 98 (218)
++.+.+.+-|...+ ...+. .+|||+=||.|- -++.||.. ..+ |+.+|.+++..+.|+.+ ...|+. +++
T Consensus 176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~--fsl~la~~----~~~-V~gvE~~~~av~~A~~Na~~N~i~n~~f 248 (352)
T PF05958_consen 176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGT--FSLPLAKK----AKK-VIGVEIVEEAVEDARENAKLNGIDNVEF 248 (352)
T ss_dssp -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTC--CHHHHHCC----SSE-EEEEES-HHHHHHHHHHHHHTT--SEEE
T ss_pred cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCH--HHHHHHhh----CCe-EEEeeCCHHHHHHHHHHHHHcCCCcceE
Confidence 45566665555444 44443 379999999887 44445532 346 66678888887777765 478888 999
Q ss_pred EEcCCCchhhcCC--------------CC--CccEEEEeCCc-cCcHHHHHHh
Q 027826 99 ITGEADDEELMDG--------------LV--DIDFLVVDSRR-KDFARVLRLA 134 (218)
Q Consensus 99 i~GdA~~~e~L~~--------------l~--~fDfVFIDa~K-~~Y~~~~~~~ 134 (218)
+.++| .++... +. .+|.|++|-.. +-.....+.+
T Consensus 249 ~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~ 299 (352)
T PF05958_consen 249 IRGDA--EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI 299 (352)
T ss_dssp EE--S--HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred EEeec--cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence 99998 665431 11 58999999874 4555566666
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.61 Score=42.53 Aligned_cols=126 Identities=14% Similarity=0.091 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEc
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~G 101 (218)
+.....+-+..|...-+|-+||.|-+|.|= .-+-.....+...-. |...+.++.-.+..+.+ ++.|++ ++|..|
T Consensus 119 l~~~i~~ai~~L~~~g~pvrIlDIAaG~GR--YvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~ 195 (311)
T PF12147_consen 119 LEELIRQAIARLREQGRPVRILDIAAGHGR--YVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQG 195 (311)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeccCCcH--HHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEec
Confidence 444555556667777899999999999885 444323322321124 66667777665665655 689999 599999
Q ss_pred CCCchhhcCCCC-CccEEEEeCCccCcHH------HHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 102 EADDEELMDGLV-DIDFLVVDSRRKDFAR------VLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 102 dA~~~e~L~~l~-~fDfVFIDa~K~~Y~~------~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
||-+.+.+..++ ..+++.+-+--+.+++ .+.-+ ..+++||.+|.-|-=||..
T Consensus 196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 196 DAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred CCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 994445677787 6899999875444443 23333 4556699999999999884
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.12 Score=40.15 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=37.6
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEcCC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEA 103 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~GdA 103 (218)
.+|+|||+.|+ .+++++...+ +++ +..+|-+++.....+ ++...++. ++++....
T Consensus 1 ~vlDiGa~~G~--~~~~~~~~~~--~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGD--TSLYFARKGA--EGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccH--HHHHHHHhCC--CCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 37999999999 8888887643 457 666788887766554 44555665 66554433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.34 Score=44.88 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~-i~~i~G 101 (218)
.++|..+.+|-.|++...=.+||+ .+.|. -++-+..++. |.++|-+ +.+..+..-++ |+...|++ ..+..+
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlD--PFcGT--GgiLiEagl~--G~~viG~-Did~~mv~gak~Nl~~y~i~~~~~~~~ 252 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLD--PFCGT--GGILIEAGLM--GARVIGS-DIDERMVRGAKINLEYYGIEDYPVLKV 252 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeec--CcCCc--cHHHHhhhhc--CceEeec-chHHHHHhhhhhhhhhhCcCceeEEEe
Confidence 679999999999999999999999 55553 2233444443 6786665 67777766555 56789888 777776
Q ss_pred -CCCchhhcCCCC--CccEEEEeCC-------c-----cCcHHHHHHh-cCCCCCeEEE
Q 027826 102 -EADDEELMDGLV--DIDFLVVDSR-------R-----KDFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 102 -dA~~~e~L~~l~--~fDfVFIDa~-------K-----~~Y~~~~~~~-~L~~~GgvIV 144 (218)
|| .. || |. .+|=|.-|-. | +.|.+.|+.+ .++++||.+|
T Consensus 253 ~Da--~~-lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 253 LDA--TN-LP-LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred ccc--cc-CC-CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99 44 44 64 5999999932 2 2388888888 6666688554
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=45.54 Aligned_cols=52 Identities=8% Similarity=0.063 Sum_probs=38.2
Q ss_pred HHHHHH-hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH
Q 027826 33 VSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL 89 (218)
Q Consensus 33 L~~L~~-~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~ 89 (218)
|..|=. ...++.+|.|||-+|. -++.||+-..+ +.|.-++.++.+.+.|+..
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~--lt~~iak~F~~---r~iLGvDID~~LI~~Ark~ 101 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGF--LTLSIAKDFGP---RRILGVDIDPVLIQRARKE 101 (288)
T ss_pred hhhccccccCcceeEeccCCcch--hHHHHHHhhcc---ceeeEeeccHHHHHHHHHh
Confidence 444422 4589999999999999 88888887643 4466678888887777544
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.42 Score=45.51 Aligned_cols=116 Identities=23% Similarity=0.221 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHHH----hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eE
Q 027826 24 SHESGVAELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~----~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~ 97 (218)
+..+.+.+-|...+. ..+..++|++=||.|- -++.||. ...+ |+.+|..++..+.|+.++ ..|+. ++
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~--f~l~lA~----~~~~-V~gvEi~~~aV~~A~~NA~~n~i~N~~ 344 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGT--FGLPLAK----RVKK-VHGVEISPEAVEAAQENAAANGIDNVE 344 (432)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCCh--hhhhhcc----cCCE-EEEEecCHHHHHHHHHHHHHcCCCcEE
Confidence 455666666665554 2345689998888777 5555552 1345 667799999888888774 78888 99
Q ss_pred EEEcCCCchhhcCCCC---CccEEEEeCCccCcH-HHHHHh-cCCCCCeEEEEeCC
Q 027826 98 VITGEADDEELMDGLV---DIDFLVVDSRRKDFA-RVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~---~fDfVFIDa~K~~Y~-~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+.|+| .+.++... .+|.|++|--...-. +.++.+ ++.|+.=|-|.=|.
T Consensus 345 f~~~~a--e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP 398 (432)
T COG2265 345 FIAGDA--EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNP 398 (432)
T ss_pred EEeCCH--HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCH
Confidence 999999 99998863 899999998866555 888888 77775544454443
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.14 Score=45.84 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~G 101 (218)
.+.....++...++....-.+||++-++-|- =+..||..+.. .|. |+..+.++++.... +++.+.|+. +.+...
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGg--Kt~~la~~~~~-~g~-i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~ 143 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGG--KTTHLAELMGN-KGE-IVANDISPKRLKRLKENLKRLGVFNVIVINA 143 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSH--HHHHHHHHTTT-TSE-EEEEESSHHHHHHHHHHHHHTT-SSEEEEES
T ss_pred EecccccccccccccccccccccccccCCCC--ceeeeeecccc-hhH-HHHhccCHHHHHHHHHHHHhcCCceEEEEee
Confidence 3456666777777777777899998888775 77778887654 688 44557777766554 456799999 888889
Q ss_pred CCCchhhcCCC-C-CccEEEEeCC
Q 027826 102 EADDEELMDGL-V-DIDFLVVDSR 123 (218)
Q Consensus 102 dA~~~e~L~~l-~-~fDfVFIDa~ 123 (218)
|+ .+..+.. . .||.|++||.
T Consensus 144 D~--~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 144 DA--RKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp HH--HHHHHHHHTTTEEEEEEECS
T ss_pred cc--ccccccccccccchhhcCCC
Confidence 99 8776543 3 5999999974
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.12 Score=45.04 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=40.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCC---c-eEEEEcCCCchhhcCCCCCc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGF---S-PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl---~-i~~i~GdA~~~e~L~~l~~f 115 (218)
+-+.||++||++|+ -+..++.. . .++ |+.++..+.+... .++ ...+ + ..+..=+. .+.-+.+..+
T Consensus 75 ~~~~vlDiG~gtG~--~t~~l~~~-g--a~~-v~avD~~~~~l~~--~l~~~~~v~~~~~~ni~~~~~--~~~~~d~~~~ 144 (228)
T TIGR00478 75 KNKIVLDVGSSTGG--FTDCALQK-G--AKE-VYGVDVGYNQLAE--KLRQDERVKVLERTNIRYVTP--ADIFPDFATF 144 (228)
T ss_pred CCCEEEEcccCCCH--HHHHHHHc-C--CCE-EEEEeCCHHHHHH--HHhcCCCeeEeecCCcccCCH--hHcCCCceee
Confidence 45689999999999 66666653 1 235 6666777643322 222 2211 1 11111122 2333344578
Q ss_pred cEEEEeCCc
Q 027826 116 DFLVVDSRR 124 (218)
Q Consensus 116 DfVFIDa~K 124 (218)
|++|+=-.+
T Consensus 145 DvsfiS~~~ 153 (228)
T TIGR00478 145 DVSFISLIS 153 (228)
T ss_pred eEEEeehHh
Confidence 888886543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.11 Score=44.88 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=62.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCceEEEEcCCCchhhcCCCCCccE
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~i~~i~GdA~~~e~L~~l~~fDf 117 (218)
..+-|+|||+|+++|. -+|.-|++ |...+..-+.+|...++.+.+. ..|++|.+..-|. +.+=..||+
T Consensus 77 tVrgkrVLd~gagsgL--vaIAaa~a----GA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~-----~g~~~~~Dl 145 (218)
T COG3897 77 TVRGKRVLDLGAGSGL--VAIAAARA----GAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL-----IGSPPAFDL 145 (218)
T ss_pred ccccceeeecccccCh--HHHHHHHh----hhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc-----cCCCcceeE
Confidence 4578999999999998 66544443 3333444466687766666554 6677799988888 332237888
Q ss_pred EEEeC---CccCcHHHHHHh-cCCCCCeEEEEeCCCCCCc
Q 027826 118 LVVDS---RRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 118 VFIDa---~K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G~ 153 (218)
++.-= +|....+...+. .+..+|..|+ +.-+|.
T Consensus 146 ~LagDlfy~~~~a~~l~~~~~~l~~~g~~vl---vgdp~R 182 (218)
T COG3897 146 LLAGDLFYNHTEADRLIPWKDRLAEAGAAVL---VGDPGR 182 (218)
T ss_pred EEeeceecCchHHHHHHHHHHHHHhCCCEEE---EeCCCC
Confidence 76532 244444555544 4554455554 445554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.42 Score=39.72 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHH--H-HHHhcCC----CCcEEEEEEcCCccHHHHHH-HHhhCCCc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSV--G-LAVASRH----TGGRHVCLVPDERSRSEYVH-ALGEAGFS 95 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsai--g-lA~a~~~----~~G~vitt~e~~~~~~~~a~-~~~~agl~ 95 (218)
.+.|..+..|-.|+...+-..+|+-=||+|- ..| + ++....+ ...+++. .+.+++....++ ++..+|+.
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGt--iliEaa~~~~~~~~~~~~~~~~~~g-~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGT--ILIEAALMGANIPPLNDINELKIIG-SDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSH--HHHHHHHHHTTTSTTTH-CH--EEE-EESSHHHHHHHHHHHHHTT-C
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCH--HHHHHHHHhhCcccccccccccEEe-cCCCHHHHHHHHHHHHhcccC
Confidence 5778889999999888877899997777775 222 1 1111110 0123344 467777766665 45689998
Q ss_pred --eEEEEcCCCchhhcCCCCCccEEEEeCC-----------ccCcHHHHHHh-cCCCCCeEEEEe
Q 027826 96 --PQVITGEADDEELMDGLVDIDFLVVDSR-----------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 96 --i~~i~GdA~~~e~L~~l~~fDfVFIDa~-----------K~~Y~~~~~~~-~L~~~GgvIV~D 146 (218)
|++..+|+ .+.-..-.++|.|..|-- +..|..+++.+ +++++..++++.
T Consensus 88 ~~i~~~~~D~--~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 88 DYIDFIQWDA--RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGEEEEE--G--GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CceEEEecch--hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999999 654312238999999932 35677777777 544435555443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.35 Score=43.77 Aligned_cols=84 Identities=20% Similarity=0.101 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCc--eEEEEcC
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~--i~~i~Gd 102 (218)
.|++.+-|..=+.....-.|||||.|+|- -|..|.++ +.+|| .+|.|+.++.. .+...-...+ .++++||
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGn--LT~~lLe~----~kkVv-A~E~Dprmvael~krv~gtp~~~kLqV~~gD 115 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGN--LTVKLLEA----GKKVV-AVEIDPRMVAELEKRVQGTPKSGKLQVLHGD 115 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCH--HHHHHHHh----cCeEE-EEecCcHHHHHHHHHhcCCCccceeeEEecc
Confidence 46666666666777778899999999998 66566654 34645 46888876543 3444434434 8999999
Q ss_pred CCchhhcCCCCCccEEEE
Q 027826 103 ADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 103 A~~~e~L~~l~~fDfVFI 120 (218)
. +.. .++-||.+.-
T Consensus 116 ~--lK~--d~P~fd~cVs 129 (315)
T KOG0820|consen 116 F--LKT--DLPRFDGCVS 129 (315)
T ss_pred c--ccC--CCcccceeec
Confidence 9 432 2335565553
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.052 Score=48.09 Aligned_cols=15 Identities=20% Similarity=0.029 Sum_probs=13.1
Q ss_pred CCCeEEEeCcCcchH
Q 027826 41 DARLIVETWSHGGAT 55 (218)
Q Consensus 41 ~ak~ILEiGt~~Gyi 55 (218)
+.++|||+|+|+|..
T Consensus 86 ~~~~vlELGsGtglv 100 (248)
T KOG2793|consen 86 KYINVLELGSGTGLV 100 (248)
T ss_pred cceeEEEecCCccHH
Confidence 677999999999983
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.099 Score=45.30 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=34.5
Q ss_pred eEEEEcCCCchhhcCCCC--CccEEEEeC--------------CccCcHHHH----HHh-cCCCCCeEEEE
Q 027826 96 PQVITGEADDEELMDGLV--DIDFLVVDS--------------RRKDFARVL----RLA-NLSSRGAVLVC 145 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~--~fDfVFIDa--------------~K~~Y~~~~----~~~-~L~~~GgvIV~ 145 (218)
+++++||+ ++.|+.++ ++|+||.|- ....|.+++ +.+ +++++||++++
T Consensus 2 ~~l~~gD~--le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNC--IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechH--HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 47899999 99999995 999999992 123344544 333 56666888875
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.95 Score=41.81 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCc-eEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~-i~~i~G 101 (218)
.++....++-..++.-..-.+||.+=..-|= =|..||..+...++. |+..+.++.+.... +++++.|+. +.++..
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPGG--KTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~ 215 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAPGG--KTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNK 215 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCCCC--HHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEec
Confidence 4566777777777777777899997666664 666788887654444 57778888776654 566899999 788888
Q ss_pred CCCchhhcCCCC---CccEEEEeCCccCc--------------H-----------HHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDGLV---DIDFLVVDSRRKDF--------------A-----------RVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~---~fDfVFIDa~K~~Y--------------~-----------~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
|+ ........ +||-|++||-=+.. + +.++.+ .++++||++|.......-
T Consensus 216 d~--~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 216 DA--RRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cc--ccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 88 54433332 59999999742110 1 122222 566779999999986655
Q ss_pred c
Q 027826 153 D 153 (218)
Q Consensus 153 ~ 153 (218)
.
T Consensus 294 e 294 (355)
T COG0144 294 E 294 (355)
T ss_pred h
Confidence 3
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.19 Score=44.23 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=71.0
Q ss_pred CCHH-HHHHHHHHHHhc-CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc--eEEE
Q 027826 25 HESG-VAELVSAMAAGW-DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS--PQVI 99 (218)
Q Consensus 25 i~p~-~g~fL~~L~~~~-~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~--i~~i 99 (218)
++|+ .+.++..-+... ++..|+..=||.| |-+|=+|.- +.. |..+|.+|.+...|+.+. -+|+. |+|+
T Consensus 76 vTpe~ia~~iA~~v~~~~~~~~iidaf~g~g--Gntiqfa~~----~~~-VisIdiDPikIa~AkhNaeiYGI~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACMNAEVIVDAFCGVG--GNTIQFALQ----GPY-VIAIDIDPVKIACARHNAEVYGVPDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhcCcchhhhhhhcCC--chHHHHHHh----CCe-EEEEeccHHHHHHHhccceeecCCceeEEE
Confidence 4444 456666555544 9999999656555 366555542 335 667899999888888775 69998 9999
Q ss_pred EcCCCchhhcCCCC----CccEEEEeCCccCcHHHHHH
Q 027826 100 TGEADDEELMDGLV----DIDFLVVDSRRKDFARVLRL 133 (218)
Q Consensus 100 ~GdA~~~e~L~~l~----~fDfVFIDa~K~~Y~~~~~~ 133 (218)
.||- +++...|+ -+|+||.-.. -.|+.|+..
T Consensus 149 ~GD~--ld~~~~lq~~K~~~~~vf~spp-wggp~y~~~ 183 (263)
T KOG2730|consen 149 CGDF--LDLASKLKADKIKYDCVFLSPP-WGGPSYLRA 183 (263)
T ss_pred echH--HHHHHHHhhhhheeeeeecCCC-CCCcchhhh
Confidence 9999 99888774 5889998764 566766655
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=92.48 E-value=1.1 Score=39.84 Aligned_cols=107 Identities=13% Similarity=0.038 Sum_probs=58.4
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEE--EEcCCCchhhcCCCCCcc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQV--ITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~--i~GdA~~~e~L~~l~~fD 116 (218)
..+|++||++|+|.| |++|-+...-+ .-.-++.+|.++.+.+.++.+.+..-...- ..... ......+.+.|
T Consensus 31 ~f~P~~vLD~GsGpG---ta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~D 104 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPG---TALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVL--YRDFLPFPPDD 104 (274)
T ss_pred CCCCceEEEecCChH---HHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhh--hcccccCCCCc
Confidence 358999999999966 56554443333 223377788999888888877543332111 11111 11112223447
Q ss_pred EEEEeCC-----ccCcHHHHHHh-cCCCCCeEEEEeCCCCCC
Q 027826 117 FLVVDSR-----RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 117 fVFIDa~-----K~~Y~~~~~~~-~L~~~GgvIV~DNvl~~G 152 (218)
+|..--- ...-.++++.+ .... +-+|++++-.-.|
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~-~~LVlVEpGt~~G 145 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTA-PVLVLVEPGTPAG 145 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhcc-CcEEEEcCCChHH
Confidence 7765321 12334444444 3344 4788888766655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.76 Score=37.41 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=51.5
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcC-CCCCccEE
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMD-GLVDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~-~l~~fDfV 118 (218)
.+-|+|+.||.+.|- |+|.++.. |++.|..+|.++......+.+.+.. .+...|-..+..+ ..++||..
T Consensus 27 vk~KtV~dIGA~iGd--SaiYF~l~----GAK~Vva~E~~~kl~k~~een~k~n----nI~DK~v~~~eW~~~Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGS--SALYFLLR----GASFVVQYEKEEKLRKKWEEVCAYF----NICDKAVMKGEWNGEYEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccc--hhhHHhhc----CccEEEEeccCHHHHHHHHHHhhhh----eeeeceeecccccccCCCcceE
Confidence 366899999999999 99987763 4555777788887665554332221 1222220011122 34699999
Q ss_pred EEeCCccCcHHHHHHh
Q 027826 119 VVDSRRKDFARVLRLA 134 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~ 134 (218)
-||++ ...+.++.-
T Consensus 97 ~iDCe--GCE~~l~v~ 110 (156)
T PHA01634 97 VMDCE--GCEEKLNVS 110 (156)
T ss_pred EEEcc--chHHhcCHH
Confidence 99997 455444443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.41 Score=41.45 Aligned_cols=66 Identities=24% Similarity=0.206 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc-eEEEEcCC
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEA 103 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~-i~~i~GdA 103 (218)
+.|-+++.+-.. -....+|+|+|. -+.--|.+ .-| |..+|.+|.++..++.+ .-.|+. +++++|||
T Consensus 22 avF~~ai~~va~-d~~~DLGaGsGi--Ls~~Aa~~----A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA 89 (252)
T COG4076 22 AVFTSAIAEVAE-DTFADLGAGSGI--LSVVAAHA----AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA 89 (252)
T ss_pred HHHHHHHHHHhh-hceeeccCCcch--HHHHHHhh----hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEeccc
Confidence 444444444444 678899999997 22111222 236 66679999998888755 456666 99999999
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.042 Score=48.67 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcC---CCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCc
Q 027826 30 AELVSAMAAGWD---ARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 30 g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~ 105 (218)
=++|..++.-.+ .+++|.+||+||..|-.|= ||. + ++-++.++.+.+.| ..+..+ -.+.+.++
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~-------~-ltGvDiS~nMl~kA--~eKg~Y-D~L~~Aea-- 177 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD-------R-LTGVDISENMLAKA--HEKGLY-DTLYVAEA-- 177 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHh-------h-ccCCchhHHHHHHH--Hhccch-HHHHHHHH--
Confidence 345655555443 6799999999999333321 222 3 55566766554433 233333 35566777
Q ss_pred hhhcCCCC--CccEEEEeCCccCcHHHHHHh-----cCCCCCeEEEEeC
Q 027826 106 EELMDGLV--DIDFLVVDSRRKDFARVLRLA-----NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~~l~--~fDfVFIDa~K~~Y~~~~~~~-----~L~~~GgvIV~DN 147 (218)
...++.++ +||+|- =+|---|.--++-+ .++.+||++++--
T Consensus 178 ~~Fl~~~~~er~DLi~-AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 178 VLFLEDLTQERFDLIV-AADVLPYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred HHHhhhccCCcccchh-hhhHHHhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 77787654 899874 34444555444443 4455599998754
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.59 Score=42.79 Aligned_cols=102 Identities=16% Similarity=0.246 Sum_probs=68.9
Q ss_pred HHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCC-CcEEEEEEcCCccHHHHHHHH-h--hCCCc---eEEEEcCCCchh
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEE 107 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~-~G~vitt~e~~~~~~~~a~~~-~--~agl~---i~~i~GdA~~~e 107 (218)
.|++..+|+++|=||-+-|= - +-.-+++. =+. +...|.+...++..+.+ . ..|++ +.++.||. ..
T Consensus 115 ~l~s~~npkkvlVVgggDgg---v--lrevikH~~ve~-i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG--~~ 186 (337)
T KOG1562|consen 115 ALCSHPNPKKVLVVGGGDGG---V--LREVIKHKSVEN-ILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG--FL 186 (337)
T ss_pred ccccCCCCCeEEEEecCCcc---c--eeeeeccccccc-eeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH--HH
Confidence 36788899999999887552 0 22222321 233 56667777766665544 2 56776 99999999 99
Q ss_pred hcCCCC--CccEEEEeCCcc------CcH-HHHHHh--cCCCCCeEEEE
Q 027826 108 LMDGLV--DIDFLVVDSRRK------DFA-RVLRLA--NLSSRGAVLVC 145 (218)
Q Consensus 108 ~L~~l~--~fDfVFIDa~K~------~Y~-~~~~~~--~L~~~GgvIV~ 145 (218)
.++.++ +||.|..|.+-. .|. .||+.+ .|++ +|+++.
T Consensus 187 fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~-dgv~~~ 234 (337)
T KOG1562|consen 187 FLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKG-DGVVCT 234 (337)
T ss_pred HHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCC-CcEEEE
Confidence 999883 999999998743 233 367776 4544 787653
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.7 Score=38.16 Aligned_cols=97 Identities=19% Similarity=0.136 Sum_probs=55.6
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCceEEEEcCC-CchhhcCCCCCccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFSPQVITGEA-DDEELMDGLVDIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~i~~i~GdA-~~~e~L~~l~~fDfV 118 (218)
-.+||=+|.++|. |.-.++--..+ +|. |..+|..+....---.++ +-+ |=-|.+|| .+.+.-.-++..|+|
T Consensus 74 gskVLYLGAasGT--TVSHvSDIvg~-~G~-VYaVEfs~r~~rdL~~la~~R~N--IiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 74 GSKVLYLGAASGT--TVSHVSDIVGP-DGV-VYAVEFSPRSMRDLLNLAKKRPN--IIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp T-EEEEETTTTSH--HHHHHHHHHTT-TSE-EEEEESSHHHHHHHHHHHHHSTT--EEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCEEEEecccCCC--ccchhhhccCC-CCc-EEEEEecchhHHHHHHHhccCCc--eeeeeccCCChHHhhcccccccEE
Confidence 4699999999886 55567776654 688 777888874321111222 333 55678999 122222223599999
Q ss_pred EEeCCccCcHHHHHH-h-cCCCCCeEEE
Q 027826 119 VVDSRRKDFARVLRL-A-NLSSRGAVLV 144 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~-~-~L~~~GgvIV 144 (218)
|.|-...+-.+.+-. + ..+++||.++
T Consensus 148 ~~DVaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 148 FQDVAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEE-SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EecCCChHHHHHHHHHHHhhccCCcEEE
Confidence 999775555555444 4 3444477554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.27 Score=40.15 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc-----CCCeEEEeCcCcchHHHHHHHHHhcCCC---CcEEEEEEcCCccHHHHHHHHhhCCCc-eEE
Q 027826 28 GVAELVSAMAAGW-----DARLIVETWSHGGATATSVGLAVASRHT---GGRHVCLVPDERSRSEYVHALGEAGFS-PQV 98 (218)
Q Consensus 28 ~~g~fL~~L~~~~-----~ak~ILEiGt~~GyiGsaiglA~a~~~~---~G~vitt~e~~~~~~~~a~~~~~agl~-i~~ 98 (218)
..-.+..++-+.. +..++|++|++.|- +...+.+. .++ +..++..+. ..+. +..
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGG------ws~~~~~~~~~~~~-v~avDl~~~----------~~~~~~~~ 67 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGG------WSQVLLQRGGPAGR-VVAVDLGPM----------DPLQNVSF 67 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSH------HHHHHHTSTTTEEE-EEEEESSST----------GS-TTEEB
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccc------eeeeeeecccccce-EEEEecccc----------ccccceee
Confidence 3344455554444 45899999999996 22222222 366 444555553 1112 444
Q ss_pred EEcCCCc---hhhcCC-C----CCccEEEEeC
Q 027826 99 ITGEADD---EELMDG-L----VDIDFLVVDS 122 (218)
Q Consensus 99 i~GdA~~---~e~L~~-l----~~fDfVFIDa 122 (218)
+.||.+. .+.+.+ + .++|+|+.|+
T Consensus 68 i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 68 IQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred eecccchhhHHHhhhhhccccccCcceecccc
Confidence 4555411 112222 1 3899999999
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.82 Score=37.02 Aligned_cols=70 Identities=10% Similarity=0.065 Sum_probs=44.8
Q ss_pred EcCCccHHHHHHH-Hh--hCC-Cc-eEEEEcCCCchhhcCCCC-CccEEEEeCCc---cCcHHHHHHh-cCCCCCeEEEE
Q 027826 76 VPDERSRSEYVHA-LG--EAG-FS-PQVITGEADDEELMDGLV-DIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 76 ~e~~~~~~~~a~~-~~--~ag-l~-i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K---~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
++.++++.+.|+. .. ..+ .. |+++.||+ .+ |+.-+ +||+|++-..- .+-.+.++.+ ++++|||.+++
T Consensus 3 vD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~--~~-lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 3 LDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA--ID-LPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred EcCCHHHHHHHHHhhhcccccCCCceEEEEech--hh-CCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 4566777666642 22 222 23 99999999 65 45333 89999886532 3455667776 66667998876
Q ss_pred eCC
Q 027826 146 KNA 148 (218)
Q Consensus 146 DNv 148 (218)
-+.
T Consensus 80 ~d~ 82 (160)
T PLN02232 80 LDF 82 (160)
T ss_pred EEC
Confidence 544
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.6 Score=34.37 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=18.1
Q ss_pred HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcE
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGR 71 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~ 71 (218)
...+||+||=||+++|| |-+--++.|... +..
T Consensus 35 ~~~GpK~VLViGaStGy-GLAsRIa~aFg~-gA~ 66 (78)
T PF12242_consen 35 KINGPKKVLVIGASTGY-GLASRIAAAFGA-GAD 66 (78)
T ss_dssp --TS-SEEEEES-SSHH-HHHHHHHHHHCC---E
T ss_pred CCCCCceEEEEecCCcc-cHHHHHHHHhcC-CCC
Confidence 34789999999999998 555334454432 444
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.1 Score=41.41 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=35.2
Q ss_pred eEEEEcCCCchhhcCCCC-CccEEEEeCCc-c-----CcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 96 PQVITGEADDEELMDGLV-DIDFLVVDSRR-K-----DFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~-~fDfVFIDa~K-~-----~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
.++..||| .+.|+++. .+|.+|.|+-- . --.++|..+ ++.++||++++-.+
T Consensus 33 L~L~~gDa--~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 33 LTLWFGDA--REMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEES-H--HHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEcHH--HHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 67899999 99999986 99999999842 2 125688887 66666999976544
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.2 Score=39.29 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=40.7
Q ss_pred eEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHH-HHH----hhCCC-----c-eEEEEcCCCchhhcCCC
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HAL----GEAGF-----S-PQVITGEADDEELMDGL 112 (218)
Q Consensus 44 ~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a-~~~----~~agl-----~-i~~i~GdA~~~e~L~~l 112 (218)
+||...+|-|- -++=||. + |++ |+-+|.+|-.+..- ..+ ..... . |+++++|+ .+.|+.-
T Consensus 78 ~VLDaTaGLG~--Da~vlA~-~---G~~-V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~--~~~L~~~ 148 (234)
T PF04445_consen 78 SVLDATAGLGR--DAFVLAS-L---GCK-VTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA--LEYLRQP 148 (234)
T ss_dssp -EEETT-TTSH--HHHHHHH-H---T---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C--CCHCCCH
T ss_pred EEEECCCcchH--HHHHHHc-c---CCe-EEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH--HHHHhhc
Confidence 89997777775 5554553 2 567 77789999765443 223 23333 1 99999999 9999932
Q ss_pred C-CccEEEEeCC
Q 027826 113 V-DIDFLVVDSR 123 (218)
Q Consensus 113 ~-~fDfVFIDa~ 123 (218)
. +||.|++|--
T Consensus 149 ~~s~DVVY~DPM 160 (234)
T PF04445_consen 149 DNSFDVVYFDPM 160 (234)
T ss_dssp SS--SEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 3 9999999964
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=90.50 E-value=1 Score=38.54 Aligned_cols=97 Identities=15% Similarity=0.204 Sum_probs=53.5
Q ss_pred EEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCc--eEEEEcCCCchhhcCCCCCccEEEEe
Q 027826 45 IVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFS--PQVITGEADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 45 ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~--i~~i~GdA~~~e~L~~l~~fDfVFID 121 (218)
|..|||==|| -.++|...-. --+++.+ +.++.-.+ +.+++.++|+. |+++.||. ++.|+.-+..|.|.|=
T Consensus 1 vaDIGtDHgy--Lpi~L~~~~~--~~~~ia~-DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG--L~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGY--LPIYLLKNGK--APKAIAV-DINPGPLEKAKENIAKYGLEDRIEVRLGDG--LEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTH--HHHHHHHTTS--EEEEEEE-ESSHHHHHHHHHHHHHTT-TTTEEEEE-SG--GGG--GGG---EEEEE
T ss_pred CceeccchhH--HHHHHHhcCC--CCEEEEE-eCCHHHHHHHHHHHHHcCCcccEEEEECCc--ccccCCCCCCCEEEEe
Confidence 5689999999 4555555322 1254444 56665444 44566899988 99999999 8877654458999997
Q ss_pred CCcc-CcHHHHHHh--cCCCCCeEEEEeCC
Q 027826 122 SRRK-DFARVLRLA--NLSSRGAVLVCKNA 148 (218)
Q Consensus 122 a~K~-~Y~~~~~~~--~L~~~GgvIV~DNv 148 (218)
+-=+ .=.+.++.. .+.+..=+|+..|.
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~ 103 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNT 103 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCC
Confidence 6522 223344443 23232347777664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.74 Score=38.34 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=62.0
Q ss_pred CHHH-HHHHHHHHHhcC---CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEE
Q 027826 26 ESGV-AELVSAMAAGWD---ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVIT 100 (218)
Q Consensus 26 ~p~~-g~fL~~L~~~~~---ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~ 100 (218)
+|+- +..++++-...+ -|+++.+||+.|. -++ |-++.. .+.+.-++.+|+..+.... ..++.++|+++.
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGm--Ls~--a~sm~~--~e~vlGfDIdpeALEIf~rNaeEfEvqidlLq 102 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGM--LSI--AFSMPK--NESVLGFDIDPEALEIFTRNAEEFEVQIDLLQ 102 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhh--hHH--HhhcCC--CceEEeeecCHHHHHHHhhchHHhhhhhheee
Confidence 4444 455666655554 7999999999998 333 333343 3446667888887666544 457888889998
Q ss_pred cCCCchhhcCCCCCccEEEEeCC
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
-+. ++..+....||-+.||-.
T Consensus 103 cdi--ldle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 103 CDI--LDLELKGGIFDTAVINPP 123 (185)
T ss_pred eec--cchhccCCeEeeEEecCC
Confidence 888 665555568999999854
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.64 E-value=1 Score=39.85 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhc---CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCceEEE
Q 027826 24 SHESGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~i~~i 99 (218)
.++|++.--=..++... .-|+||=+|=-= . ++|++|.... ..+ |+.++.++...+.-+.. .+.|+.|+.+
T Consensus 24 ~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDD-L--tSlA~al~~~--~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~ 97 (243)
T PF01861_consen 24 YATPETTLRRAALMAERGDLEGKRILFLGDDD-L--TSLALALTGL--PKR-ITVVDIDERLLDFINRVAEEEGLPIEAV 97 (243)
T ss_dssp -B-HHHHHHHHHHHHHTT-STT-EEEEES-TT----HHHHHHHHT----SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE
T ss_pred cccHHHHHHHHHHHHhcCcccCCEEEEEcCCc-H--HHHHHHhhCC--CCe-EEEEEcCHHHHHHHHHHHHHcCCceEEE
Confidence 46777653333333333 468999987432 2 5665554333 346 88889998777665544 5889999999
Q ss_pred EcCCCchhhcCC-C-CCccEEEEeCCccCcHHHHHHh------cCCCCCeEEEE
Q 027826 100 TGEADDEELMDG-L-VDIDFLVVDSRRKDFARVLRLA------NLSSRGAVLVC 145 (218)
Q Consensus 100 ~GdA~~~e~L~~-l-~~fDfVFIDa~K~~Y~~~~~~~------~L~~~GgvIV~ 145 (218)
+-|. .+-||. + +.||.+|.|-- .-++=+.++ -|..+|+.+.+
T Consensus 98 ~~Dl--R~~LP~~~~~~fD~f~TDPP--yT~~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 98 HYDL--RDPLPEELRGKFDVFFTDPP--YTPEGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp ---T--TS---TTTSS-BSEEEE-----SSHHHHHHHHHHHHHTB-STT-EEEE
T ss_pred Eecc--cccCCHHHhcCCCEEEeCCC--CCHHHHHHHHHHHHHHhCCCCceEEE
Confidence 9999 999986 4 49999999964 444555553 45555755433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.3 Score=40.36 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|..-.+=+.+.++.+++.++= .++|. +|+. .-..+.+.++++|++...--......+ .+.+.|++..++..
T Consensus 74 ~~nPt~~~le~~iaal~ga~~~l~--fsSGm--aA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~ 149 (409)
T KOG0053|consen 74 SGNPTRDVLESGIAALEGAAHALL--FSSGM--AAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV 149 (409)
T ss_pred CCCCchHHHHHHHHHHhCCceEEE--ecccH--HHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence 445777777788899999999887 45565 4443 223334557887777543333444444 44588888888876
Q ss_pred CCCchhhcCC-CC-CccEEEEeCCccCcHHHHHH--h-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSRRKDFARVLRL--A-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~K~~Y~~~~~~--~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+-+.. .+ ..++||+-.----+.+..+. + ++. ++|-+||+||++-.+
T Consensus 150 ~~--~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 150 DD--LKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred hh--HHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc
Confidence 66 554444 44 49999999865444443333 2 443 559999999998665
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=0.33 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.5
Q ss_pred eEEEEcCCCchhhcCCCC--CccEEEEeCC
Q 027826 96 PQVITGEADDEELMDGLV--DIDFLVVDSR 123 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~l~--~fDfVFIDa~ 123 (218)
.++++||+ ++.++.++ +||+||+|-.
T Consensus 9 ~~i~~gD~--~~~l~~l~~~siDlIitDPP 36 (284)
T PRK11524 9 KTIIHGDA--LTELKKIPSESVDLIFADPP 36 (284)
T ss_pred CEEEeccH--HHHHHhcccCcccEEEECCC
Confidence 57899999 99998885 8999999953
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.66 E-value=0.63 Score=43.74 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhhccCCCCCHHHHHHHHHHH------HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCcc
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMA------AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS 81 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~~i~p~~g~fL~~L~------~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~ 81 (218)
+.+.+|||.+.-+.. -|.+-+.|- --..|++||++|-|-| |.+|-+...-+ +=+-.+++|.++.
T Consensus 80 dm~V~Ayias~lp~~------Yasv~asL~~L~~~~~dfapqsiLDvG~GPg---tgl~A~n~i~P-dl~sa~ile~sp~ 149 (484)
T COG5459 80 DMAVKAYIASRLPQT------YASVRASLDELQKRVPDFAPQSILDVGAGPG---TGLWALNDIWP-DLKSAVILEASPA 149 (484)
T ss_pred hHHHHHHHHHhhhHH------HHHHHHHHHHHHHhCCCcCcchhhccCCCCc---hhhhhhcccCC-CchhhhhhccCHH
Confidence 456778887754322 233322222 2357999999888766 45442322222 2222456677765
Q ss_pred HHHHHHHHh-hCCCc-eEEEEcCCCchhhcCCC---CCccEEEE------eCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 82 RSEYVHALG-EAGFS-PQVITGEADDEELMDGL---VDIDFLVV------DSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 82 ~~~~a~~~~-~agl~-i~~i~GdA~~~e~L~~l---~~fDfVFI------Da~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
....-..+. ....+ ..-..+|. .+-.-.+ +.|+++.+ |.....-..+++.+ .++.+||.+|.
T Consensus 150 lrkV~~tl~~nv~t~~td~r~s~v--t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVi 223 (484)
T COG5459 150 LRKVGDTLAENVSTEKTDWRASDV--TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVI 223 (484)
T ss_pred HHHHHHHHHhhcccccCCCCCCcc--chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEE
Confidence 443333332 23332 22244444 2221122 36777654 44433444577777 55555888775
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.73 E-value=2.3 Score=37.75 Aligned_cols=81 Identities=15% Similarity=0.033 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCC
Q 027826 27 SGVAELVSAMAAGWD--ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~~~--ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~ 104 (218)
+-...-|..| .+-. +.-||+|||++|.+|+. +.+ .|+..+-++..+.+.+.|.. .+ ++-+++.+|-
T Consensus 35 em~eRaLELL-alp~~~~~~iLDIGCGsGLSg~v------L~~-~Gh~wiGvDiSpsML~~a~~-~e--~egdlil~DM- 102 (270)
T KOG1541|consen 35 EMAERALELL-ALPGPKSGLILDIGCGSGLSGSV------LSD-SGHQWIGVDISPSMLEQAVE-RE--LEGDLILCDM- 102 (270)
T ss_pred HHHHHHHHHh-hCCCCCCcEEEEeccCCCcchhe------ecc-CCceEEeecCCHHHHHHHHH-hh--hhcCeeeeec-
Confidence 3344444444 3444 88999999999994433 233 46878888999998777653 11 1125677777
Q ss_pred chhhcCCCC-CccEEEE
Q 027826 105 DEELMDGLV-DIDFLVV 120 (218)
Q Consensus 105 ~~e~L~~l~-~fDfVFI 120 (218)
-+-||--+ +||=|..
T Consensus 103 -G~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 103 -GEGLPFRPGTFDGVIS 118 (270)
T ss_pred -CCCCCCCCCccceEEE
Confidence 66666544 8887653
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.54 E-value=3.7 Score=38.10 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=62.8
Q ss_pred CCeEEEeCcCcchHHHHHH-HHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCCCccEEEE
Q 027826 42 ARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVV 120 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaig-lA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~~fDfVFI 120 (218)
-...|.+|.| +|..++ +..-.+ .=+ -+.-..+...+.|+++. .| |+.+.||- ++- .++-|.||+
T Consensus 178 v~~avDvGgG---iG~v~k~ll~~fp--~ik--~infdlp~v~~~a~~~~-~g--V~~v~gdm--fq~---~P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGG---IGRVLKNLLSKYP--HIK--GINFDLPFVLAAAPYLA-PG--VEHVAGDM--FQD---TPKGDAIWM 242 (342)
T ss_pred CceEEEcCCc---HhHHHHHHHHhCC--CCc--eeecCHHHHHhhhhhhc-CC--cceecccc--ccc---CCCcCeEEE
Confidence 6889998876 456666 333222 222 22233344455566665 55 78899999 554 446678887
Q ss_pred -----eCCccCcHHHHHHh--cCCCCCeEEEEeCCCCCC
Q 027826 121 -----DSRRKDFARVLRLA--NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 121 -----Da~K~~Y~~~~~~~--~L~~~GgvIV~DNvl~~G 152 (218)
|=.-++...+|+.| -|.+.|.|||.||++-..
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e 281 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEE 281 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCC
Confidence 33346788899999 455778999999998764
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.2 Score=38.87 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHh-----cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh-hCCCc-eEEEE
Q 027826 28 GVAELVSAMAAG-----WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS-PQVIT 100 (218)
Q Consensus 28 ~~g~fL~~L~~~-----~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~-~agl~-i~~i~ 100 (218)
.+-.||..|... .+..+.|+.|+|.|= - .+.+.-+--..|..+|..+...+.|+... ..+-. .++..
T Consensus 37 gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGR--V----Tk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~ 110 (218)
T PF05891_consen 37 GSRNFLKKLKRGRKPGKPKFNRALDCGAGIGR--V----TKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYC 110 (218)
T ss_dssp HHHHHHHCCCT---------SEEEEET-TTTH--H----HHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCcceEEecccccch--h----HHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEe
Confidence 356777776666 368899998888776 2 33221112233777888888777766443 31222 45554
Q ss_pred cCCCchhhcCCCCCccEEEEeCC-----ccCcHHHHHHh--cCCCCCeEEEE-eCCCCCCc
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR-----RKDFARVLRLA--NLSSRGAVLVC-KNAYSRND 153 (218)
Q Consensus 101 GdA~~~e~L~~l~~fDfVFIDa~-----K~~Y~~~~~~~--~L~~~GgvIV~-DNvl~~G~ 153 (218)
--- .+.-|.-..||+|.+==- -++..+||+.| -|.| +|+||+ +|+-..|.
T Consensus 111 ~gL--Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~-~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 111 VGL--QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP-NGVIVVKENVSSSGF 168 (218)
T ss_dssp S-G--GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE-EEEEEEEEEEESSSE
T ss_pred cCH--hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC-CcEEEEEecCCCCCC
Confidence 444 555565458999998521 13467788888 4656 666554 78877773
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.5 Score=41.21 Aligned_cols=71 Identities=17% Similarity=0.410 Sum_probs=46.9
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhh-CCCc--eEEEEcCCCchhh-cCCCCCc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGE-AGFS--PQVITGEADDEEL-MDGLVDI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~-agl~--i~~i~GdA~~~e~-L~~l~~f 115 (218)
.+-|-||++|+++|. -|. +|.. .|++.|..+|-. ++++.|+.+.+ ..+. |.+|.|.. .++ || ++.
T Consensus 176 F~~kiVlDVGaGSGI-LS~--FAaq---AGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi--EdieLP--Ek~ 244 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGI-LSF--FAAQ---AGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI--EDIELP--EKV 244 (517)
T ss_pred cCCcEEEEecCCccH-HHH--HHHH---hCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc--ccccCc--hhc
Confidence 356889999999997 122 2322 255558887775 58888887754 3444 99999998 542 22 267
Q ss_pred cEEEEe
Q 027826 116 DFLVVD 121 (218)
Q Consensus 116 DfVFID 121 (218)
|.+.-.
T Consensus 245 DviISE 250 (517)
T KOG1500|consen 245 DVIISE 250 (517)
T ss_pred cEEEec
Confidence 776644
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=86.52 E-value=6.2 Score=37.40 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcC---------CCeEEEeC-cCcchHHHHHH--HHHhcC-CCCcEEEEEEcCCccHHHHHHH---H-hhC
Q 027826 30 AELVSAMAAGWD---------ARLIVETW-SHGGATATSVG--LAVASR-HTGGRHVCLVPDERSRSEYVHA---L-GEA 92 (218)
Q Consensus 30 g~fL~~L~~~~~---------ak~ILEiG-t~~GyiGsaig--lA~a~~-~~~G~vitt~e~~~~~~~~a~~---~-~~a 92 (218)
..++..|.+..+ .+.|+=+| ||+|= |++. ||.++. ..+|+-|..+..++.+..+... + ...
T Consensus 200 ~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGK--TTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~ 277 (424)
T PRK05703 200 RYLLELLANMIPVRVEDILKQGGVVALVGPTGVGK--TTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM 277 (424)
T ss_pred HHHHHHHHHHhCccccccccCCcEEEEECCCCCCH--HHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh
Confidence 345555555443 24566677 66665 4433 665553 2244336666677755433332 2 246
Q ss_pred CCceEEEEcCCCchhhcCCCCCccEEEEeCC
Q 027826 93 GFSPQVITGEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 93 gl~i~~i~GdA~~~e~L~~l~~fDfVFIDa~ 123 (218)
|+.+.......++.+.|..+..+|+||||..
T Consensus 278 ~vp~~~~~~~~~l~~~l~~~~~~DlVlIDt~ 308 (424)
T PRK05703 278 GIPVEVVYDPKELAKALEQLRDCDVILIDTA 308 (424)
T ss_pred CCceEccCCHHhHHHHHHHhCCCCEEEEeCC
Confidence 6654433322233556666678999999965
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=86.48 E-value=2.4 Score=39.65 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCc---eEEEEcCCCchhhcCCCC-Cc
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~---i~~i~GdA~~~e~L~~l~-~f 115 (218)
++-+|||.=+++|. =+|=+|.-+.. ..+ |+.=+.+++..+..+ +....|++ +++.+.|| ...|.... .|
T Consensus 49 ~~~~~lDalaasGv--R~iRy~~E~~~-~~~-v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA--n~ll~~~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGV--RGIRYAKELAG-VDK-VTANDISPEAVELIKRNLELNGLEDERIEVSNMDA--NVLLYSRQERF 122 (377)
T ss_dssp S-EEEEETT-TTSH--HHHHHHHH-SS-ECE-EEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H--HHHHCHSTT-E
T ss_pred CCceEEeccccccH--HHHHHHHHcCC-CCE-EEEecCCHHHHHHHHHhHhhccccCceEEEehhhH--HHHhhhccccC
Confidence 34599998888888 67656665432 235 666677787666554 44556665 78999999 88886333 89
Q ss_pred cEEEEeCCccCcHHHHHHh-cCCCCCeEEEEeCC
Q 027826 116 DFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNv 148 (218)
|+|=||.- +.=.+|++.+ +-.+.||++-+--+
T Consensus 123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 99988886 5666899998 55555999876554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=86.31 E-value=3.2 Score=36.89 Aligned_cols=80 Identities=21% Similarity=0.259 Sum_probs=41.6
Q ss_pred CCeEEEeC-cCcchHHHHHH--HHHhcCCC-CcEEEEEEcCCccHHHHHH---HHh-hCCCceEEEEcCCCchhhcCCCC
Q 027826 42 ARLIVETW-SHGGATATSVG--LAVASRHT-GGRHVCLVPDERSRSEYVH---ALG-EAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 42 ak~ILEiG-t~~GyiGsaig--lA~a~~~~-~G~vitt~e~~~~~~~~a~---~~~-~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
++.|+=+| ||+|= |++. ||..+... +++-|..+..++.+..+.. .+. ..|+.+.+...+.++.+.|..+.
T Consensus 194 ~~vi~~vGptGvGK--TTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~ 271 (282)
T TIGR03499 194 GGVIALVGPTGVGK--TTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR 271 (282)
T ss_pred CeEEEEECCCCCCH--HHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc
Confidence 33555555 55565 4333 66655432 3233555566665433332 232 45555433322222355666677
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
.+|+||||..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 8999999974
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.98 Score=43.82 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=50.0
Q ss_pred cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCCC-Cc
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l~-~f 115 (218)
.+.+.+|.||||+|- ++..+.+.+=..+++-.++. . +....| .+-|+. +-++ + ..-||--. .|
T Consensus 116 g~iR~~LDvGcG~aS------F~a~l~~r~V~t~s~a~~d~-~-~~qvqfaleRGvpa~~~~~---~--s~rLPfp~~~f 182 (506)
T PF03141_consen 116 GGIRTALDVGCGVAS------FGAYLLERNVTTMSFAPNDE-H-EAQVQFALERGVPAMIGVL---G--SQRLPFPSNAF 182 (506)
T ss_pred CceEEEEeccceeeh------hHHHHhhCCceEEEcccccC-C-chhhhhhhhcCcchhhhhh---c--cccccCCccch
Confidence 567899999998886 44444443323233333332 2 222233 356665 2111 2 33455443 89
Q ss_pred cEE-----EEeCCccCcHHHHHHh-cCCCCCeEEEEeCCC
Q 027826 116 DFL-----VVDSRRKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 116 DfV-----FIDa~K~~Y~~~~~~~-~L~~~GgvIV~DNvl 149 (218)
|+| .|+-...+ .-|+-.+ +++++||..|-..--
T Consensus 183 DmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 998 33332222 1133333 777779998876653
|
; GO: 0008168 methyltransferase activity |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.76 E-value=5.1 Score=37.66 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhC--CCceEEEEcCCCchhhcCCCC-CccEE
Q 027826 42 ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEA--GFSPQVITGEADDEELMDGLV-DIDFL 118 (218)
Q Consensus 42 ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~a--gl~i~~i~GdA~~~e~L~~l~-~fDfV 118 (218)
+++|+|-=+++|. -+|=.|..... -+ ++.=+.+|+..+..+.+.+. +..+.++.+|| -..|.+.. .||+|
T Consensus 53 ~~~v~DalsatGi--RgIRya~E~~~--~~-v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DA--N~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGI--RGIRYAVETGV--VK-VVLNDISPKAVELIKENVRLNSGEDAEVINKDA--NALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccch--hHhhhhhhcCc--cE-EEEccCCHHHHHHHHHHHHhcCcccceeecchH--HHHHHhcCCCccEE
Confidence 9999998787787 66556654432 15 55557888877776655433 44488888999 99998876 78877
Q ss_pred EEeCCccCcHHHHHHh-cCCCCCeEEEE---eCCCCCC
Q 027826 119 VVDSRRKDFARVLRLA-NLSSRGAVLVC---KNAYSRN 152 (218)
Q Consensus 119 FIDa~K~~Y~~~~~~~-~L~~~GgvIV~---DNvl~~G 152 (218)
=||-- +.=.+|++.+ .-.+.||++-+ |-.-..|
T Consensus 126 DiDPF-GSPaPFlDaA~~s~~~~G~l~vTATD~a~L~G 162 (380)
T COG1867 126 DIDPF-GSPAPFLDAALRSVRRGGLLCVTATDTAPLCG 162 (380)
T ss_pred ecCCC-CCCchHHHHHHHHhhcCCEEEEEecccccccC
Confidence 66654 5666788887 44454888753 4444455
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=85.73 E-value=2.1 Score=31.99 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHhcCCCCc-EEEEEEcCCccHHHHHHHHhhCCCceEEEEcCCCchhhcCCCC--CccEEEEeCCcc
Q 027826 51 HGGATATSVGLAVASRHTGG-RHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVVDSRRK 125 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G-~vitt~e~~~~~~~~a~~~~~agl~i~~i~GdA~~~e~L~~l~--~fDfVFIDa~K~ 125 (218)
|+|. .+..+++.+.+ ++ . ++.++.+++.. +.+.+.| ++++.||++..++|.++. ..|.+++..+..
T Consensus 5 G~g~--~~~~i~~~L~~-~~~~-vvvid~d~~~~---~~~~~~~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 5 GYGR--IGREIAEQLKE-GGID-VVVIDRDPERV---EELREEG--VEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp S-SH--HHHHHHHHHHH-TTSE-EEEEESSHHHH---HHHHHTT--SEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred cCCH--HHHHHHHHHHh-CCCE-EEEEECCcHHH---HHHHhcc--cccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 3455 34447777766 56 5 66778887553 3334555 679999997778898765 899999998744
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=85.60 E-value=2.6 Score=39.41 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHH--HHHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEE
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaig--lA~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~ 100 (218)
.-.|.+..+=..|+.+.++..++=. ++|. +||. +...+ .+|.+++..-..-......-+ .+.+.|+++++..
T Consensus 52 ~gnPt~~~le~~la~Le~g~~a~~~--~SGm--aAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d 126 (386)
T PF01053_consen 52 YGNPTVRALEQRLAALEGGEDALLF--SSGM--AAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVD 126 (386)
T ss_dssp TC-HHHHHHHHHHHHHHT-SEEEEE--SSHH--HHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEES
T ss_pred cccccHHHHHHHHHHhhcccceeec--cchH--HHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEEEEeC
Confidence 5689999999999999999988884 5566 5552 33333 446786665333222222223 3446787766664
Q ss_pred cCCCchhhcCC-CC-CccEEEEeCCcc--CcHHHHHHh-cCC-CCC-eEEEEeCCCCCC
Q 027826 101 GEADDEELMDG-LV-DIDFLVVDSRRK--DFARVLRLA-NLS-SRG-AVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~-l~-~fDfVFIDa~K~--~Y~~~~~~~-~L~-~~G-gvIV~DNvl~~G 152 (218)
..- .+.+.. ++ .-++||+..--. ....-++.+ ++. +.| .++|+||++-.+
T Consensus 127 ~~d--~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 127 PTD--LEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp TTS--HHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred chh--HHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 433 555543 44 899999997633 233333333 443 346 899999998544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=85.47 E-value=8.2 Score=35.24 Aligned_cols=121 Identities=7% Similarity=0.072 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|=..|++..++...+ -+++|. .++.++.++..++.++++....-+.... ....+...|+.+..+.
T Consensus 49 ~~~pt~~~le~~la~l~g~~~~~--~~~sG~--~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd-- 122 (366)
T PRK08247 49 TGNPTRGVLEQAIADLEGGDQGF--ACSSGM--AAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVN-- 122 (366)
T ss_pred CCCchHHHHHHHHHHHhCCCcEE--EEcCHH--HHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEEC--
Confidence 45688899999999999988764 455666 4554344443446676654333222222 2233456776644432
Q ss_pred CCchhhcC-CCC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCC
Q 027826 103 ADDEELMD-GLV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYS 150 (218)
Q Consensus 103 A~~~e~L~-~l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~ 150 (218)
.++.+.+. .+. ..++||+..- +-....-++.+ .+. +.|.++|+||+..
T Consensus 123 ~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~ 176 (366)
T PRK08247 123 TASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFY 176 (366)
T ss_pred CCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 22234343 343 6789998543 22222334444 333 4488999999974
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.45 E-value=5.8 Score=37.05 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHh----------cCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCC
Q 027826 24 SHESGVAELVSAMAAG----------WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAG 93 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~----------~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~ag 93 (218)
..++..-++...+-.. ..-+++|++|++.|= =|--|+ +.|++ |+.++..+ .+..+...+
T Consensus 184 apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGG--WT~~L~----~rG~~-V~AVD~g~----l~~~L~~~~ 252 (357)
T PRK11760 184 APSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGG--WTYQLV----RRGMF-VTAVDNGP----MAQSLMDTG 252 (357)
T ss_pred CCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcH--HHHHHH----HcCCE-EEEEechh----cCHhhhCCC
Confidence 4555555555554443 355699999999985 221133 23667 55555443 223332221
Q ss_pred CceEEEEcCCCchhhcCCCCCccEEEEeCCccCcHHHHHHh
Q 027826 94 FSPQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA 134 (218)
Q Consensus 94 l~i~~i~GdA~~~e~L~~l~~fDfVFIDa~K~~Y~~~~~~~ 134 (218)
.|+.+.+++ ....+.-.++|+++.|.. +.-.+..+++
T Consensus 253 -~V~h~~~d~--fr~~p~~~~vDwvVcDmv-e~P~rva~lm 289 (357)
T PRK11760 253 -QVEHLRADG--FKFRPPRKNVDWLVCDMV-EKPARVAELM 289 (357)
T ss_pred -CEEEEeccC--cccCCCCCCCCEEEEecc-cCHHHHHHHH
Confidence 289999999 888776458999999997 4444555655
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=85.25 E-value=1.6 Score=38.42 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH--HHHHhhC-CCc--eEEEEcCCCchhhcCCC------CCccEEE
Q 027826 51 HGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY--VHALGEA-GFS--PQVITGEADDEELMDGL------VDIDFLV 119 (218)
Q Consensus 51 ~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~--a~~~~~a-gl~--i~~i~GdA~~~e~L~~l------~~fDfVF 119 (218)
|+|=..+++.||.++...|++ |+.++-||.+.-. ++.-.+. .+. +++...+- ...|... ..|||||
T Consensus 12 GaGKTT~~~~LAs~la~~G~~-V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e--~~~l~~~~e~a~~~~~d~Vl 88 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGAR-VALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADE--LTILEDAYEAAEASGFDFVL 88 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCe-EEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccc--hhhHHHHHHHHHhcCCCEEE
Confidence 456522344577777655666 7778888875332 2211122 233 55555444 3344332 2699999
Q ss_pred EeCCc
Q 027826 120 VDSRR 124 (218)
Q Consensus 120 IDa~K 124 (218)
||-.-
T Consensus 89 vDleG 93 (231)
T PF07015_consen 89 VDLEG 93 (231)
T ss_pred EeCCC
Confidence 99863
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed | Back alignment and domain information |
|---|
Probab=85.07 E-value=4.2 Score=37.64 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=46.3
Q ss_pred eEEEeCcC-----cchHHHHHHHHHhcCCCC--cEEEEEEcCCccHHHH---HHHHhhCCCceEEEEcCCCchhhcCCCC
Q 027826 44 LIVETWSH-----GGATATSVGLAVASRHTG--GRHVCLVPDERSRSEY---VHALGEAGFSPQVITGEADDEELMDGLV 113 (218)
Q Consensus 44 ~ILEiGt~-----~GyiGsaiglA~a~~~~~--G~vitt~e~~~~~~~~---a~~~~~agl~i~~i~GdA~~~e~L~~l~ 113 (218)
.||=.+-+ .|| ||++|+..++...+ =+ |...|..|...-. ++.+.+.|+.++++...+ .-.+=.-.
T Consensus 149 ~ILThc~sg~lat~~~-gTal~~i~~A~~~gk~~~-V~v~EsRP~~qG~~lta~eL~~~GI~vtlI~Dsa--~~~~M~~~ 224 (344)
T PRK05720 149 GILTHCNAGWLATAGY-GTALAPIYAAKEKGIDIH-VYADETRPRLQGARLTAWELYQAGIDVTVITDNM--AAHLMQTG 224 (344)
T ss_pred EEEEecCCCcceecch-hHHHHHHHHHHHcCCceE-EEEcCCCChhhhHHHHHHHHHHCCCCEEEEcccH--HHHHhccc
Confidence 57765321 266 78888555443212 23 4455666654432 566779999999998777 55443323
Q ss_pred CccEEEEeCC
Q 027826 114 DIDFLVVDSR 123 (218)
Q Consensus 114 ~fDfVFIDa~ 123 (218)
..|+|++-|+
T Consensus 225 ~vd~VivGAd 234 (344)
T PRK05720 225 KIDAVIVGAD 234 (344)
T ss_pred CCCEEEEccc
Confidence 6888888766
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.59 E-value=12 Score=32.67 Aligned_cols=100 Identities=19% Similarity=0.129 Sum_probs=60.2
Q ss_pred hcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHh--hCCCceEEEEcCCCchhhcCCC-CCc
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAGFSPQVITGEADDEELMDGL-VDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~--~agl~i~~i~GdA~~~e~L~~l-~~f 115 (218)
+..-.+||=+|.++|. |.-.++--+. .|+ |..+|..+.. .++.+. +.--.|--+.+||+--+.-..+ +..
T Consensus 74 i~~g~~VLYLGAasGT--TvSHVSDIv~--~G~-iYaVEfs~R~--~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 74 IKEGSKVLYLGAASGT--TVSHVSDIVG--EGR-IYAVEFSPRP--MRELLDVAEKRPNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCCCEEEEeeccCCC--cHhHHHhccC--CCc-EEEEEecchh--HHHHHHHHHhCCCceeeecccCCcHHhhhhcccc
Confidence 3456799999999997 5555776654 578 7777887743 222221 1111155588999111111222 589
Q ss_pred cEEEEeCCccCcHHHHHH-h--cCCCCCeEEEE
Q 027826 116 DFLVVDSRRKDFARVLRL-A--NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~K~~Y~~~~~~-~--~L~~~GgvIV~ 145 (218)
|+||.|-...+-.+.+-. + -|.+.|+++++
T Consensus 147 Dviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 999999887666666655 3 45554444443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=15 Score=37.00 Aligned_cols=95 Identities=7% Similarity=0.048 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHh-cCCCeEEEeCcCcchHHHHHHH-HHhcCC----------------------------------
Q 027826 24 SHESGVAELVSAMAAG-WDARLIVETWSHGGATATSVGL-AVASRH---------------------------------- 67 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~-~~ak~ILEiGt~~GyiGsaigl-A~a~~~---------------------------------- 67 (218)
++.+..+.-|-.++.- .+-..++.-.||+|.+..-.+| |...++
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4555666555556554 3457899999999973322222 221111
Q ss_pred ---CCcEEEEEEcCCccHHHHHHHH-hhCCCc--eEEEEcCCCchhhcCCC--CCccEEEEe
Q 027826 68 ---TGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMDGL--VDIDFLVVD 121 (218)
Q Consensus 68 ---~~G~vitt~e~~~~~~~~a~~~-~~agl~--i~~i~GdA~~~e~L~~l--~~fDfVFID 121 (218)
...+ ++-.|.++++...++.+ ..+|+. |+++.+|+ .+.-... ++||+|..+
T Consensus 252 ~~~~~~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~--~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 252 LAELPSK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDV--ADLKNPLPKGPTGLVISN 310 (702)
T ss_pred ccccCce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh--hhcccccccCCCCEEEEC
Confidence 1124 66678888888877655 689997 99999999 7754333 269999988
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=83.89 E-value=5 Score=34.37 Aligned_cols=107 Identities=12% Similarity=0.070 Sum_probs=51.1
Q ss_pred HHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH----Hh----hCCCc---eEEEEcCCCc
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA----LG----EAGFS---PQVITGEADD 105 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~----~~----~agl~---i~~i~GdA~~ 105 (218)
+.+..-...++||||.|= ..+ +.|+...-.+ ..-+|..+.....++. +. ..|.. ++++.||.
T Consensus 38 ~~l~~~dvF~DlGSG~G~--~v~--~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf-- 110 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGN--VVF--QAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF-- 110 (205)
T ss_dssp TT--TT-EEEEES-TTSH--HHH--HHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T--
T ss_pred hCCCCCCEEEECCCCCCH--HHH--HHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc--
Confidence 344445589999999886 332 2222221234 4556888887665542 21 34554 88899998
Q ss_pred hh--hcCC-CCCccEEEEeCCc---cCcHHHHHHhcCCCCCeEEEEeCCCC
Q 027826 106 EE--LMDG-LVDIDFLVVDSRR---KDFARVLRLANLSSRGAVLVCKNAYS 150 (218)
Q Consensus 106 ~e--~L~~-l~~fDfVFIDa~K---~~Y~~~~~~~~L~~~GgvIV~DNvl~ 150 (218)
++ ..+. +..-|+||+...- +.-....+.+.-+|+|..||+=--+.
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred cccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 43 2332 2478999998752 11111222223346699998744343
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=83.86 E-value=6.9 Score=36.16 Aligned_cols=123 Identities=11% Similarity=0.027 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH-HHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~-a~~~~~agl~i~~i~Gd 102 (218)
.-.|.+.+|=..+++..+++..+=+ ++|. +++-++.++..+|.++++....-...... .......|+++.++..+
T Consensus 47 ~~~p~~~~Le~~la~l~g~~~al~~--~SG~--~Al~~~l~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~ 122 (380)
T PRK06176 47 SGNPTRFALEELIADLEGGVKGFAF--ASGL--AGIHAVFSLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTS 122 (380)
T ss_pred CCChhHHHHHHHHHHHhCCCCEEEE--CCHH--HHHHHHHHHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCC
Confidence 5678899999999999988887654 4454 34433333334577866653322212222 22334677665554333
Q ss_pred CCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- .+.+.+ ++ ...+||+-.- .-....-++.+ .+. +.|.++|+||+...+
T Consensus 123 d--~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 123 D--LSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred C--HHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 2 444443 44 6789998433 21122223333 333 448999999997543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=82.81 E-value=7.9 Score=37.29 Aligned_cols=91 Identities=13% Similarity=0.149 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhc-------CCCeEEEeCcCcchHHHHHHHHHhcCCCC---c--EEEEEEcCCccHHHHHH-HHhhC
Q 027826 26 ESGVAELVSAMAAGW-------DARLIVETWSHGGATATSVGLAVASRHTG---G--RHVCLVPDERSRSEYVH-ALGEA 92 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~-------~ak~ILEiGt~~GyiGsaiglA~a~~~~~---G--~vitt~e~~~~~~~~a~-~~~~a 92 (218)
++..+++|..++... ...+|||.+||+|- -.++++..+...+ + .-++..|.++.....++ .+...
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~--fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~ 86 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGR--LIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF 86 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccH--HHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc
Confidence 345555555544221 45699999999998 4444444442111 1 23667788887766555 44444
Q ss_pred C-CceEEEEcCCCchhhc----CC-CCCccEEEE
Q 027826 93 G-FSPQVITGEADDEELM----DG-LVDIDFLVV 120 (218)
Q Consensus 93 g-l~i~~i~GdA~~~e~L----~~-l~~fDfVFI 120 (218)
+ +.++++.+|. +... +. .+.||+|.-
T Consensus 87 ~~~~~~i~~~d~--l~~~~~~~~~~~~~fD~IIg 118 (524)
T TIGR02987 87 ALLEINVINFNS--LSYVLLNIESYLDLFDIVIT 118 (524)
T ss_pred CCCCceeeeccc--ccccccccccccCcccEEEe
Confidence 4 3367777776 4311 11 247999874
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627 | Back alignment and domain information |
|---|
Probab=82.78 E-value=16 Score=31.98 Aligned_cols=71 Identities=13% Similarity=-0.003 Sum_probs=46.2
Q ss_pred hhhHHHHHHhhhccCC-CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHH
Q 027826 8 ETASKAYIDTVKSCEL-SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY 85 (218)
Q Consensus 8 ~~a~~ayl~~l~~~~~-~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~ 85 (218)
.+.++|-++---.... +++......+...++-..|=+.|=+|-+-.+ . |..++.. +|+ +..+|.++.....
T Consensus 5 ~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghds---l--lW~aLN~-gGr-TvFLEEd~~~i~~ 76 (225)
T TIGR01627 5 LSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQY---L--MWSSLNH-RGR-TVFIEEEKIMIAK 76 (225)
T ss_pred hhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcch---H--HHHHhcC-CCe-eEEecCCHHHHHH
Confidence 3344555544433222 6778888889999999999999999887664 3 4444554 788 4556666655433
|
This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=82.67 E-value=4.3 Score=35.97 Aligned_cols=92 Identities=10% Similarity=0.054 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcC-----CCCcEEEEEEcCCccHHHHHHH-HhhCCCc---
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASR-----HTGGRHVCLVPDERSRSEYVHA-LGEAGFS--- 95 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~-----~~~G~vitt~e~~~~~~~~a~~-~~~agl~--- 95 (218)
-++..++|+..++......+|++-.||+|- -.+....-+. ...-. ++-.|.++.....++. +.-.|..
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~--fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGG--FLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSH--HHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHH--HHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccc
Confidence 467788999999977777899999999997 3333333210 11334 6677888887766653 3334444
Q ss_pred eEEEEcCCCchhhcCC--CCCccEEEEe
Q 027826 96 PQVITGEADDEELMDG--LVDIDFLVVD 121 (218)
Q Consensus 96 i~~i~GdA~~~e~L~~--l~~fDfVFID 121 (218)
..+..+|. +..-.. ...||+|+..
T Consensus 107 ~~i~~~d~--l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 107 INIIQGDS--LENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp CEEEES-T--TTSHSCTST--EEEEEEE
T ss_pred cccccccc--ccccccccccccccccCC
Confidence 56999999 654443 3489999875
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=82.13 E-value=7.8 Score=35.35 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=54.1
Q ss_pred CCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHH-HhhCCCceEEEEcCCCchhh---cCCC--CC
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEADDEEL---MDGL--VD 114 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~-~~~agl~i~~i~GdA~~~e~---L~~l--~~ 114 (218)
....+|....|.|- =|..|+.+++ +|+ ++.++.+++....++. +...+=.+++++++- .+. |+.+ ++
T Consensus 20 ~ggiyVD~TlG~GG--HS~~iL~~l~--~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF--~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 20 PDGIYIDCTLGFGG--HSKAILEQLG--TGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF--ANFFEHLDELLVTK 92 (305)
T ss_pred CCCEEEEeCCCChH--HHHHHHHhCC--CCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH--HHHHHHHHhcCCCc
Confidence 33579995555554 8888888775 389 5567888887666654 444332389999998 654 4443 37
Q ss_pred ccEEEEeCCccCc
Q 027826 115 IDFLVVDSRRKDF 127 (218)
Q Consensus 115 fDfVFIDa~K~~Y 127 (218)
+|.|+.|---+.+
T Consensus 93 vDgIl~DLGvSS~ 105 (305)
T TIGR00006 93 IDGILVDLGVSSP 105 (305)
T ss_pred ccEEEEeccCCHh
Confidence 9999999765444
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.37 E-value=8.9 Score=35.50 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHH-HHHHHhhCCCceEEEEcC
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSE-YVHALGEAGFSPQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~-~a~~~~~agl~i~~i~Gd 102 (218)
.-.|...+|-+.|++..+++..+= +++|. ++|.++..+..+|.+++++...-..... ..+.....|.++.++.-+
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~~v~--~~sG~--~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTKGFA--FASGM--AAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCCeEE--ECCHH--HHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 457889999999999998887554 45555 4544333222335675655332221222 223345678775554322
Q ss_pred CCchhhc-CCCC-CccEEEEeCCcc---CcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 103 ADDEELM-DGLV-DIDFLVVDSRRK---DFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L-~~l~-~fDfVFIDa~K~---~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
- .+.+ ..+. .-++||+..--. ...+ ++.+ .+. +.|.++|+||+...+
T Consensus 127 d--~~~l~~~l~~~tklV~l~~p~NptG~~~d-l~~I~~la~~~g~~vvvD~a~~~~ 180 (390)
T PRK08064 127 N--LEEVAQNIKPNTKLFYVETPSNPLLKVTD-IRGVVKLAKAIGCLTFVDNTFLTP 180 (390)
T ss_pred C--HHHHHHhcCCCceEEEEECCCCCCcEecc-HHHHHHHHHHcCCEEEEECCCCcc
Confidence 2 3333 3454 678999875432 2222 2222 332 448899999996443
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=81.22 E-value=12 Score=34.92 Aligned_cols=123 Identities=16% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHHH-HhcCCCCcEEEEEEcC-CccHHHHHHHHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPD-ERSRSEYVHALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaiglA-~a~~~~~G~vitt~e~-~~~~~~~a~~~~~agl~i~~i~G 101 (218)
.-.|...+|-..|++..+++.++=++ +|. +++-.+ .++..+|.++++.... .+......+.....|..+.++..
T Consensus 67 ~~~p~~~~le~~lA~l~g~~~al~~~--sG~--~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 67 YGNPTVSMFEERLRLIEGAEACFATA--SGM--SAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred CCCchHHHHHHHHHHHhCCCcEEEEC--ChH--HHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 46788999999999999999888754 454 444311 1223346675554312 12222333444577877665543
Q ss_pred CCCchhhcC-CCC-CccEEEEeCCccCcH--HHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMD-GLV-DIDFLVVDSRRKDFA--RVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~-~l~-~fDfVFIDa~K~~Y~--~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+. .+. .-++||+..--.-.. .-++.+ .+. +.|.++|+||+...+
T Consensus 143 ~d--~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~ 197 (403)
T PRK07810 143 ED--LSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP 197 (403)
T ss_pred CC--HHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 32 44343 343 678999865432222 223333 333 448899999997655
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=81.18 E-value=21 Score=32.98 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHHH-HHhhCCCceEEEEc
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a~-~~~~agl~i~~i~G 101 (218)
.-.|....|=..|++..++..++= +.+|+ .++.+ ..++..+|.+++++...-........ .....|+.++++.-
T Consensus 47 ~gnPt~~~lE~~lA~l~g~~~~~~--~~sG~--~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 47 RGTLTHFALQDAMCELEGGAGCYL--YPSGL--AAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred CCCccHHHHHHHHHHHhCCCcEEE--ECcHH--HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 456888888888888889988886 55566 45442 22333446676655322221122222 23456766554422
Q ss_pred CCCchhhcCC-CC-CccEEEEeCC--ccCcHHHHHHh-cCC-CCCeEEEEeCCCCCC
Q 027826 102 EADDEELMDG-LV-DIDFLVVDSR--RKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~-l~-~fDfVFIDa~--K~~Y~~~~~~~-~L~-~~GgvIV~DNvl~~G 152 (218)
+- .+.+.+ +. ...+|++..- ......-++.+ .+. +.|..+|+||+...|
T Consensus 123 ~~--~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g 177 (377)
T TIGR01324 123 LI--GEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG 177 (377)
T ss_pred CC--HHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 11 233443 33 6789998754 33334444444 443 448999999998666
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.87 E-value=6.8 Score=34.76 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHH---HhcCCCeEEEeCcCcchHHHHHHHHHhcCCCCcEEEEEEcCCccHHHHHHHHhhCCCceEEEEc
Q 027826 25 HESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGsaiglA~a~~~~~G~vitt~e~~~~~~~~a~~~~~agl~i~~i~G 101 (218)
+++..-.+...|= -..+=+.+|.||++||= +...+.+.|++.|+.++--.. +..-.+ +.+..|.++++
T Consensus 60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGG------FTd~lLq~gAk~VyavDVG~~--Ql~~kL-R~d~rV~~~E~ 130 (245)
T COG1189 60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGG------FTDVLLQRGAKHVYAVDVGYG--QLHWKL-RNDPRVIVLER 130 (245)
T ss_pred cccHHHHHHHHHHhcCcCCCCCEEEEecCCCcc------HHHHHHHcCCcEEEEEEccCC--ccCHhH-hcCCcEEEEec
Confidence 4444434444333 34577899999999985 233333445666766655432 222111 34444555554
Q ss_pred CCCchhhcC--CCC-CccEEEEeCCccCcHHHHHHh-cCCCCCeEEEE
Q 027826 102 EADDEELMD--GLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 102 dA~~~e~L~--~l~-~fDfVFIDa~K~~Y~~~~~~~-~L~~~GgvIV~ 145 (218)
.= ...|. .+. ..||+++|..--.-...+..+ .++.+++.+++
T Consensus 131 tN--~r~l~~~~~~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 131 TN--VRYLTPEDFTEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CC--hhhCCHHHcccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 33 33232 232 799999998866666666666 55544665553
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.31 E-value=38 Score=31.81 Aligned_cols=125 Identities=12% Similarity=0.026 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCeEEEeCcCcchHHHHHHH-HHhcCCCCcEEEEEEcCCccHHHHH-HHHhhCCCceEEE
Q 027826 22 ELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQVI 99 (218)
Q Consensus 22 ~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGsaigl-A~a~~~~~G~vitt~e~~~~~~~~a-~~~~~agl~i~~i 99 (218)
.+.-.|....|=..|+.+-++...+=+.+ |. ++|.+ ..++-.+|.++|++...-....... +.+.+.|+++.++
T Consensus 57 sR~~nPt~~~le~~la~LEg~~~a~~~~S--Gm--aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 57 GRRGTLTHFSLQEAMCELEGGAGCALYPC--GA--AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred cCCCChhHHHHHHHHHHHhCCCeEEEEhH--HH--HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 34678999999999999999998888655 55 44442 2233344678666522221222222 3345788876665
Q ss_pred EcCCCchhhcC-CCC-CccEEEEeCCccCcHH--HHHHh-cCC-C--CCeEEEEeCCCCCC
Q 027826 100 TGEADDEELMD-GLV-DIDFLVVDSRRKDFAR--VLRLA-NLS-S--RGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~-~l~-~fDfVFIDa~K~~Y~~--~~~~~-~L~-~--~GgvIV~DNvl~~G 152 (218)
...- .+.+. .++ .-.+||++.--.--.. -++.+ .+. + +|.++++||++.-|
T Consensus 133 d~~d--~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p 191 (395)
T PRK08114 133 DPLI--GADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAG 191 (395)
T ss_pred CCCC--HHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 4322 33343 344 5689999976433322 22222 332 2 26899999998655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 100.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 100.0 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 100.0 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 99.54 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.36 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.33 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.32 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.31 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.3 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.3 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.25 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.12 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.09 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.07 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.06 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.02 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.92 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.77 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.77 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.77 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.76 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.74 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.73 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.73 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.7 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.65 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.64 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.64 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.61 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.57 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.56 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.55 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.52 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.49 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.49 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.48 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.48 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.48 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.47 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.46 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.46 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.45 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.41 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.4 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.39 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.38 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.38 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.37 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.36 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.36 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.36 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.33 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.29 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.25 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.23 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.21 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.19 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.17 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.16 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.13 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.13 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.11 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.08 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.06 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.03 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.96 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.87 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.76 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.75 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.63 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.38 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.37 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.34 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.33 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 97.31 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.15 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.07 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.0 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.91 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 96.89 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.79 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.69 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.68 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 96.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 96.54 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.24 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.22 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.04 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.03 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 95.35 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 95.24 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 94.96 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 94.36 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 93.79 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 93.54 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 92.91 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 91.51 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 91.42 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 90.1 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 86.61 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 85.81 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.99 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 83.28 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 82.21 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.81 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 81.54 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 80.92 |
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.5e-43 Score=261.25 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=136.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EE
Q ss_conf 2878888899999999985699939993757561899999998649899699999739820899999-99658994--39
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~ 97 (218)
..+.++|++|+||++|++..+||+|||+||++|| |++|||.++++ +|+ ++|+|.+++....|+ ++.++|+. |+
T Consensus 39 ~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~Gy--Stl~la~al~~-~g~-v~tie~~~~~~~~A~~~~~~~g~~~~i~ 114 (227)
T d1susa1 39 NIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGY--SLLATALAIPE-DGK-ILAMDINKENYELGLPVIKKAGVDHKID 114 (227)
T ss_dssp GGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGH--HHHHHHHHSCT-TCE-EEEEESCCHHHHHHHHHHHHTTCGGGEE
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHH--HHHHHHHHCCC-CCE-EEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 6565589999999999983599848970404446--67778861899-847-9999616135788877898733355145
Q ss_pred EEECCCCCHHHCCCC------C-CCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECCCCCCC---C------C-----
Q ss_conf 998379950110899------9-811899808966829999975-4989984999818877784---2------0-----
Q 027826 98 VITGEADDEELMDGL------V-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S------T----- 155 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l------~-~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G~---~------~----- 155 (218)
+++|+| .++|+++ . +||||||||+|.+|++||+++ ++.++||+||+||++|+|. + .
T Consensus 115 ~~~g~a--~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~ 192 (227)
T d1susa1 115 FREGPA--LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYY 192 (227)
T ss_dssp EEESCH--HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHH
T ss_pred EEEHHH--HHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 550578--888999984215677501899626355338999999852689838998167778861487644067889999
Q ss_pred ---HH-HHHHHCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf ---26-564313678898389994558938999993
Q 027826 156 ---FR-WKNVLDGRSRRLVRSVYLPVGKGLDIAHVA 187 (218)
Q Consensus 156 ---~~-~~~~~~~~~~~~~~t~llPigDGL~v~r~~ 187 (218)
.+ +++.+.++ ++|+++++|+|||++++||.
T Consensus 193 ~~~i~~~n~~i~~d--~r~~~~llPigDGl~i~~K~ 226 (227)
T d1susa1 193 RDFVLELNKALAVD--PRIEICMLPVGDGITICRRI 226 (227)
T ss_dssp HHHHHHHHHHHHHC--TTBCCEEECSTTCEEEECBC
T ss_pred HHHHHHHHHHHHCC--CCEEEEEEECCCEEEEEEEC
T ss_conf 99999999997359--99799996317725798977
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-41 Score=252.56 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=136.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--E
Q ss_conf 02878888899999999985699939993757561899999998649899699999739820899999-99658994--3
Q 027826 20 SCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--P 96 (218)
Q Consensus 20 ~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I 96 (218)
...+.++|++|+||++|++..+||+|||+||++|| |++|||.++++ +|+ ++++|.+++....++ ++.++|+. |
T Consensus 38 ~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~Gy--Stl~~a~al~~-~g~-i~tie~~~~~~~~A~~~~~~ag~~~~i 113 (219)
T d2avda1 38 QGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGY--SALALALALPA-DGR-VVTCEVDAQPPELGRPLWRQAEAEHKI 113 (219)
T ss_dssp TGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSH--HHHHHHTTSCT-TCE-EEEEESCSHHHHHHHHHHHHTTCTTTE
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHH--HHHHHHHHCCC-CCE-EEEEEECHHHHHHHHHHHHHCCCCCEE
T ss_conf 87766499999999999971698739987423657--79999972998-753-899960266779999999863766507
Q ss_pred EEEECCCCCHHHCCCC-----C-CCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECCCCCCC---C--------CHH-
Q ss_conf 9998379950110899-----9-811899808966829999975-4989984999818877784---2--------026-
Q 027826 97 QVITGEADDEELMDGL-----V-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---S--------TFR- 157 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l-----~-~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G~---~--------~~~- 157 (218)
++++||| .+.++++ . +|||||+|++|++|.+||+.+ +++++||+|++||++|+|. + .++
T Consensus 114 ~~~~Gda--~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~ 191 (219)
T d2avda1 114 DLRLKPA--LETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRN 191 (219)
T ss_dssp EEEESCH--HHHHHHHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHH
T ss_pred EEEEEEH--HHCCHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9999405--53136665211467710799707887779999999987357858999677455766685447888999999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 56431367889838999455893899999
Q 027826 158 WKNVLDGRSRRLVRSVYLPVGKGLDIAHV 186 (218)
Q Consensus 158 ~~~~~~~~~~~~~~t~llPigDGL~v~r~ 186 (218)
+++.+.++ +++++++||+|||++|++|
T Consensus 192 ~~~~i~~d--~r~~~~llPigdGl~ia~K 218 (219)
T d2avda1 192 LNERIRRD--VRVYISLLPLGDGLTLAFK 218 (219)
T ss_dssp HHHHHHHC--TTEEEEEECSTTCEEEEEE
T ss_pred HHHHHHHC--CCEEEEEEECCCEEEEEEE
T ss_conf 99999759--9979999651882389996
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=4.3e-33 Score=204.68 Aligned_cols=156 Identities=17% Similarity=0.267 Sum_probs=128.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EE
Q ss_conf 2878888899999999985699939993757561899999998649899699999739820899999-99658994--39
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~ 97 (218)
..+.++|++|+||+.|++..+|++|||+||++|| ||++||.+++ ++|+ +++++.+++....++ ++..+|+. |+
T Consensus 36 ~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~--Sti~la~al~-~~g~-v~sid~~~~~~~~a~~~~~~~gl~~~i~ 111 (214)
T d2cl5a1 36 WAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY--SAVRMARLLQ-PGAR-LLTMEMNPDYAAITQQMLNFAGLQDKVT 111 (214)
T ss_dssp CCCSCHHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHTTCC-TTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHH--HHHHHHHHCC-CCCE-EEEEECCHHHHHHHHHHHHHCCCCCCCE
T ss_conf 7646489999999999985299879997127034--7999997588-7637-9998456888899988998728886110
Q ss_pred EEECCCCCHHHCCCC------CCCCEEEEECCCCCCHHHHHHH---CCCCCCEEEEEECCCCCCCCCHH-HHHHHCCCCC
Q ss_conf 998379950110899------9811899808966829999975---49899849998188777842026-5643136788
Q 027826 98 VITGEADDEELMDGL------VDIDFLVVDSRRKDFARVLRLA---NLSSRGAVLVCKNAYSRNDSTFR-WKNVLDGRSR 167 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l------~~~DfVFIDa~K~~Y~~~~~~~---~L~~~GgiIv~DNvl~~G~~~~~-~~~~~~~~~~ 167 (218)
++.||+ .++|+++ .+|||+|||++|+.|..++.+. +++++||+||+||++|+|.+++. +++..
T Consensus 112 l~~Gd~--~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~~----- 184 (214)
T d2cl5a1 112 ILNGAS--QDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGS----- 184 (214)
T ss_dssp EEESCH--HHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHHC-----
T ss_pred EEECCC--CCCCCCHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHCC-----
T ss_conf 441100--0111200211565544235423563101007789998476388919999276788986899998615-----
Q ss_pred CCEEEEE-------EECCCCEEEEEEE
Q ss_conf 9838999-------4558938999993
Q 027826 168 RLVRSVY-------LPVGKGLDIAHVA 187 (218)
Q Consensus 168 ~~~~t~l-------lPigDGL~v~r~~ 187 (218)
+++.+.. +|++||++++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~dgl~~s~~~ 211 (214)
T d2cl5a1 185 SSFECTHYSSYLEYMKVVDGLEKAIYQ 211 (214)
T ss_dssp TTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred CCEEEHHHHHCCEECCCCCCEEEEEEC
T ss_conf 841401100010352267855999934
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.54 E-value=2.2e-14 Score=98.71 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCC--CCCCEEEEEECCCCCHHHHHHHHHHCCCC-EEEEE
Q ss_conf 8888899999999985699939993757561899999998649--89969999973982089999999658994-39998
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASR--HTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~--~~~g~vi~t~e~~~~~~~~a~~~~~agl~-I~~i~ 100 (218)
+..|....+++.|+.-.+|++||||||+.|+ |++++|..+. ..+|+++++ +.++.....+ ..... |+++.
T Consensus 63 ~k~p~d~~~~~eli~~~KPk~ILEIGv~~Gg--S~~~~a~~l~~~~~~~kI~gi-DId~~~~~~~----~~~~~~I~~i~ 135 (232)
T d2bm8a1 63 LKDPDTQAVYHDMLWELRPRTIVELGVYNGG--SLAWFRDLTKIMGIDCQVIGI-DRDLSRCQIP----ASDMENITLHQ 135 (232)
T ss_dssp CSCHHHHHHHHHHHHHHCCSEEEEECCTTSH--HHHHHHHHHHHTTCCCEEEEE-ESCCTTCCCC----GGGCTTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHCCCCCEEEEC-CCCHHHHHHH----HCCCCCEEEEE
T ss_conf 2298999999999998599989997999763--799999999754998348704-7575666553----13442113431
Q ss_pred CCCCCHHHCCCCC--CCCEEEEECCCCCCHHHHHHH--CCCCCCEEEEEECCC
Q ss_conf 3799501108999--811899808966829999975--498998499981887
Q 027826 101 GEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA--NLSSRGAVLVCKNAY 149 (218)
Q Consensus 101 GdA~~~e~L~~l~--~~DfVFIDa~K~~Y~~~~~~~--~L~~~GgiIv~DNvl 149 (218)
||++..+.+..+. .+||||||++......+.++. .++++||++|++++.
T Consensus 136 gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i 188 (232)
T d2bm8a1 136 GDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI 188 (232)
T ss_dssp CCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 02244889987774178789986886149999999984436759999998478
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.8e-12 Score=84.95 Aligned_cols=131 Identities=15% Similarity=0.111 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 35699999965302878888899999999985699939993757561899999998649899699999739820899999
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 8 ~~a~~ay~~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~ 87 (218)
.|....|...++-...+|-|.-..++-.++......+|||+||++|+ .++.||.++.+ +|+ |+++|.++++...|+
T Consensus 65 ~Pt~~d~~~~~~r~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~--lt~~LAr~vg~-~G~-V~t~E~~~~~~~~A~ 140 (324)
T d2b25a1 65 RPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGG--MSLFLSKAVGS-QGR-VISFEVRKDHHDLAK 140 (324)
T ss_dssp CCCHHHHHHHSCCSSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSH--HHHHHHHHHCT-TCE-EEEEESSHHHHHHHH
T ss_pred CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHHCC-CCE-EEEECCCHHHHHHHH
T ss_conf 89989986315788764465329999997389999999991524309--99999998489-858-998559999999999
Q ss_pred -HHHHC----------CCC--EEEEECCCCCHHHCCCCC--CCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf -99658----------994--399983799501108999--811899808966829999975-498998499981
Q 027826 88 -ALGEA----------GFS--PQVITGEADDEELMDGLV--DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 88 -~~~~a----------gl~--I~~i~GdA~~~e~L~~l~--~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
++.+. ++. ++++++|. .+....+. .||.||+|-... .++++.+ +.+++||.+++-
T Consensus 141 ~n~~~~~~~~~~~~~~~~~~nv~~~~~di--~~~~~~~~~~~fD~V~LD~p~P--~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 141 KNYKHWRDSWKLSHVEEWPDNVDFIHKDI--SGATEDIKSLTFDAVALDMLNP--HVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp HHHHHHHHHHTTTCSSCCCCCEEEEESCT--TCCC-------EEEEEECSSST--TTTHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCH--HHCCCCCCCCCCCEEEECCCCH--HHHHHHHHHHCCCCCEEEEE
T ss_conf 99997301012334310566403785434--4354346788764575257688--99999999952589889999
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=7.2e-12 Score=84.42 Aligned_cols=131 Identities=17% Similarity=0.105 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 35699999965302878888899999999985699939993757561899999998649899699999739820899999
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 8 ~~a~~ay~~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~ 87 (218)
.|....|...++-...++-|.-..++-.++......+|||+||++|+ .++.||.++.+ +|+ ++++|.++++...|+
T Consensus 70 ~p~~~d~~~~~~r~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~--lt~~lA~~~~~-~G~-V~~vD~~~~~~~~A~ 145 (266)
T d1o54a_ 70 IPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGA--MCAVLARAVGS-SGK-VFAYEKREEFAKLAE 145 (266)
T ss_dssp CCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHTTT-TCE-EEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH--HHHHHHHHHCC-CCE-EEEEECCHHHHHHHH
T ss_conf 89989998526688644366889999996088899999878988778--99999997389-838-999839999999999
Q ss_pred -HHHHCCCC--EEEEECCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf -99658994--399983799501108999811899808966829999975-4989984999818
Q 027826 88 -ALGEAGFS--PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 88 -~~~~agl~--I~~i~GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
++.++++. +.+.++|. .+.++. ..||.||+|.. +..++++.+ +++++||.+++.-
T Consensus 146 ~~~~~~g~~~~v~~~~~d~--~~~~~~-~~~D~V~~d~p--~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 146 SNLTKWGLIERVTIKVRDI--SEGFDE-KDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp HHHHHTTCGGGEEEECCCG--GGCCSC-CSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHCCCCCCEEEECCC--CCCCCC-CCEEEEEECCC--CHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9999840556737984543--234343-33035676379--99999999996038997799994
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=4.2e-12 Score=85.72 Aligned_cols=132 Identities=14% Similarity=0.071 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH
Q ss_conf 35699999965302878888899999999985699939993757561899999998649899699999739820899999
Q 027826 8 ETASKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH 87 (218)
Q Consensus 8 ~~a~~ay~~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~ 87 (218)
.|....|...++-...++-|.-..++-.++......+|||+||++|+ .++.||.++.+ +|+ ++++|.++++...|+
T Consensus 63 ~pt~~~~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~--lt~~La~~vgp-~G~-V~~~d~~~~~~~~Ar 138 (264)
T d1i9ga_ 63 RPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGA--LTLSLLRAVGP-AGQ-VISYEQRADHAEHAR 138 (264)
T ss_dssp CCCHHHHHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHHCT-TSE-EEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH--HHHHHHHHHCC-CCE-EEEECCCHHHHHHHH
T ss_conf 89999997515687656366789999998488999999861768709--99999996489-947-998648999999999
Q ss_pred H-HHHC--C-CC-EEEEECCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 9-9658--9-94-399983799501108999811899808966829999975-4989984999818
Q 027826 88 A-LGEA--G-FS-PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 88 ~-~~~a--g-l~-I~~i~GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
. +..+ + .. ++++++|+ .+.--.-..||.||+|.... .++++.+ +.+++||.+++-.
T Consensus 139 ~n~~~~~~~~~~nv~~~~~d~--~~~~~~~~~fDaV~ldlp~P--~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 139 RNVSGCYGQPPDNWRLVVSDL--ADSELPDGSVDRAVLDMLAP--WEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp HHHHHHHTSCCTTEEEECSCG--GGCCCCTTCEEEEEEESSCG--GGGHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHCCCCCCEEEEEECCC--CCCCCCCCCCCEEEEECCCH--HHHHHHHHHCCCCCCEEEEEE
T ss_conf 742343047875389994453--11456678766689953897--998899885067798999993
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.31 E-value=1.6e-11 Score=82.49 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC--EEEEE
Q ss_conf 88888999999999856999399937575618999999986498996999997398208999999-9658994--39998
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~--I~~i~ 100 (218)
+...+.-.++-.+.+.....+|||+||++|+ .++.+|. . .++ ++.+|.+++....++. ..+.|+. |++++
T Consensus 16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~--~s~~lA~---~-~~~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~ 88 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGG--VTLELAG---R-VRR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLME 88 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSH--HHHHHHT---T-SSE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEECCEEC--CCCCCCC---C-CEE-EEEECCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 8839999999996599998999997788281--2502124---5-408-9994399999999999999839974169998
Q ss_pred CCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf 3799501108999811899808966829999975-498998499981887778
Q 027826 101 GEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 101 GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
||+ .+.+.....||.||++....+..++++.+ +.+++||.+++.......
T Consensus 89 gda--~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~ 139 (186)
T d1l3ia_ 89 GDA--PEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLET 139 (186)
T ss_dssp SCH--HHHHTTSCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred CCH--HHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 843--315422288678999485002067999999981859889999642166
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.30 E-value=2.7e-12 Score=86.83 Aligned_cols=127 Identities=11% Similarity=0.028 Sum_probs=93.2
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HH
Q ss_conf 99999965302878888899999999985699939993757561899999998649899699999739820899999-99
Q 027826 11 SKAYIDTVKSCELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-AL 89 (218)
Q Consensus 11 ~~ay~~~l~~~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~ 89 (218)
..-|...++-...++-|.-..++-+.+....-.+|||+||++|+ .++.||.++.+ .|+ +++.|.++++...|+ ++
T Consensus 55 ~~~~~~~~~r~~qiiypkD~~~Ii~~l~i~pG~rVLEiG~GsG~--lt~~la~~v~~-~g~-V~~vD~~e~~~~~A~~n~ 130 (250)
T d1yb2a1 55 PMYFGRVIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGN--MSSYILYALNG-KGT-LTVVERDEDNLKKAMDNL 130 (250)
T ss_dssp GGGHHHHC------------------CCCCTTCEEEEECCTTSH--HHHHHHHHHTT-SSE-EEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEECCH--HHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHH
T ss_conf 89998417898764687889999998099996978992222749--99999997099-958-999979899999999999
Q ss_pred HHCC-CC-EEEEECCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 6589-94-399983799501108999811899808966829999975-498998499981
Q 027826 90 GEAG-FS-PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 90 ~~ag-l~-I~~i~GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
.+.+ .. ++++++|. .+.++. .+||.||+|... -.++++.+ +.+++||++++.
T Consensus 131 ~~~~~~~nv~~~~~Di--~~~~~~-~~fD~V~ld~p~--p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 131 SEFYDIGNVRTSRSDI--ADFISD-QMYDAVIADIPD--PWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp HTTSCCTTEEEECSCT--TTCCCS-CCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEE
T ss_pred HHHCCCCCEEEEEEEE--ECCCCC-CEEEEEEECCCC--HHHHHHHHHHHCCCCCEEEEE
T ss_conf 9850898168997002--012344-225435663775--689999999856977539999
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.30 E-value=9.2e-12 Score=83.81 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC-EEEEEC
Q ss_conf 8888899999999985699939993757561899999998649899699999739820899999-99658994-399983
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~-I~~i~G 101 (218)
+..|..-+.+-.++......+||||||++|| .+..||....+ +|+ |++++.++++...++ .+...++. +.+++|
T Consensus 58 i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~--~s~~la~~~~~-~g~-V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~ 133 (213)
T d1dl5a1 58 SSQPSLMALFMEWVGLDKGMRVLEIGGGTGY--NAAVMSRVVGE-KGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCG 133 (213)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHHHCT-TCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ECCCHHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHHHHHHCC-CCC-EEEEECCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 3152356778876420345359996476534--68999998388-774-8976133566777666676632356531117
Q ss_pred CCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 799501108999811899808966829999975-498998499981
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
|+ .+.++.-.+||.||+.+..++.++- +. .|+| ||.+|+.
T Consensus 134 d~--~~~~~~~~~fD~I~~~~~~~~~p~~--l~~~Lkp-GG~lv~p 174 (213)
T d1dl5a1 134 DG--YYGVPEFSPYDVIFVTVGVDEVPET--WFTQLKE-GGRVIVP 174 (213)
T ss_dssp CG--GGCCGGGCCEEEEEECSBBSCCCHH--HHHHEEE-EEEEEEE
T ss_pred CH--HHCCCCCCCHHHHHHHCCHHHHHHH--HHHHCCC-CCEEEEE
T ss_conf 66--7725454441043333249786899--9985488-9599999
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.1e-11 Score=81.80 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=82.2
Q ss_pred CCCHHH-HHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC-----
Q ss_conf 888889-999999998-5699939993757561899999998649899699999739820899999-99658994-----
Q 027826 24 SHESGV-AELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS----- 95 (218)
Q Consensus 24 ~i~p~~-g~fL~~L~~-~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~----- 95 (218)
+..|.. +.+|..|.. .....+||||||++|| .+..||..+.+ .|+ |+++|.++++...++ ++.+.++.
T Consensus 57 is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy--~ta~la~l~~~-~g~-V~~ie~~~~l~~~a~~~l~~~~~~~~~~~ 132 (224)
T d1i1na_ 57 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGI--LTACFARMVGC-TGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSG 132 (224)
T ss_dssp ECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSH--HHHHHHHHHCT-TCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHHCC-CCE-EEEECCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 546677899998876406998748984698987--99999998587-855-99984789999999973244575312135
Q ss_pred -EEEEECCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf -399983799501108999811899808966829999975-498998499981
Q 027826 96 -PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 96 -I~~i~GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
+++++||+ .+..+.-.+||.|++++...+.++- +. .|++ ||.+|+-
T Consensus 133 ~~~~~~gD~--~~~~~~~~~fD~I~~~~~~~~ip~~--l~~~Lkp-GG~LV~p 180 (224)
T d1i1na_ 133 RVQLVVGDG--RMGYAEEAPYDAIHVGAAAPVVPQA--LIDQLKP-GGRLILP 180 (224)
T ss_dssp SEEEEESCG--GGCCGGGCCEEEEEECSBBSSCCHH--HHHTEEE-EEEEEEE
T ss_pred CEEEEEEEC--CCCCCHHHHHHHHHHHCCHHHCCHH--HHHHCCC-CCEEEEE
T ss_conf 248999401--2464112235554210453335998--9953288-9689999
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.12 E-value=2.5e-10 Score=75.66 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC-EEEEEC
Q ss_conf 8888899999999985699939993757561899999998649899699999739820899999-99658994-399983
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~-I~~i~G 101 (218)
+..|..-..+-.++....-.+||||||++|| .|..||.-+ +++ ++++|.+++....++ .+.+.|+. +++++|
T Consensus 61 is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY--~taila~l~---g~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g 134 (215)
T d1jg1a_ 61 VSAPHMVAIMLEIANLKPGMNILEVGTGSGW--NAALISEIV---KTD-VYTIERIPELVEFAKRNLERAGVKNVHVILG 134 (215)
T ss_dssp ECCHHHHHHHHHHHTCCTTCCEEEECCTTSH--HHHHHHHHH---CSC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHH---CCE-EEEEECCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 3455657898876415764347896688785--599999861---760-6998326889999999898719961699988
Q ss_pred CCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf 799501108999811899808966829999975498998499981
Q 027826 102 EADDEELMDGLVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 102 dA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~~L~~~GgiIv~D 146 (218)
|+ .+-.+...+||-|++.+.-...++.|-. +|.+ ||.+|+.
T Consensus 135 d~--~~g~~~~~pfD~Iiv~~a~~~ip~~l~~-qL~~-gGrLv~p 175 (215)
T d1jg1a_ 135 DG--SKGFPPKAPYDVIIVTAGAPKIPEPLIE-QLKI-GGKLIIP 175 (215)
T ss_dssp CG--GGCCGGGCCEEEEEECSBBSSCCHHHHH-TEEE-EEEEEEE
T ss_pred CC--CCCCCCCCCCEEEEEECCCCCCCHHHHH-HCCC-CCEEEEE
T ss_conf 61--0387556761168840450007988997-4488-9789999
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.09 E-value=1.2e-10 Score=77.50 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=79.1
Q ss_pred CCCHH-HHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHCCC----CCCEEEEEECCCCCHHHHHHH-HHH-----
Q ss_conf 88888-999999999-856999399937575618999999986498----996999997398208999999-965-----
Q 027826 24 SHESG-VAELVSAMA-AGWDARLIVETWSHGGATATSVGLAVASRH----TGGRHVCLVPDERSRSEYVHA-LGE----- 91 (218)
Q Consensus 24 ~i~p~-~g~fL~~L~-~~~~ak~ILEiGt~~GyiGtaigLA~a~~~----~~g~vi~t~e~~~~~~~~a~~-~~~----- 91 (218)
+..|. .+.+|..|. ......+||||||++|| .|..||..+.+ ++++ |+++|.+++....++. +..
T Consensus 61 is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY--~ta~la~l~g~~g~~~~~~-V~~iE~~~~l~~~a~~~l~~~~~~~ 137 (223)
T d1r18a_ 61 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGY--LTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSM 137 (223)
T ss_dssp ECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSH--HHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHHHHCCCCCCCE-EEEEECCHHHHHHHHHHHHHCCHHH
T ss_conf 302355789998776406887758984699888--9999999852316776547-9987258999999987665402221
Q ss_pred CCCC-EEEEECCCCCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 8994-399983799501108999811899808966829999975-498998499981
Q 027826 92 AGFS-PQVITGEADDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 92 agl~-I~~i~GdA~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
.++. +++++||+ .+..+...+||.|++++.-...++.| . +|.+ ||.+|+-
T Consensus 138 ~~~~nv~~~~~d~--~~~~~~~~~fD~Iiv~~a~~~~p~~l--~~~Lk~-gG~lV~p 189 (223)
T d1r18a_ 138 LDSGQLLIVEGDG--RKGYPPNAPYNAIHVGAAAPDTPTEL--INQLAS-GGRLIVP 189 (223)
T ss_dssp HHHTSEEEEESCG--GGCCGGGCSEEEEEECSCBSSCCHHH--HHTEEE-EEEEEEE
T ss_pred CCCCEEEEEECCC--CCCCCCCCCEEEEEEEEECHHCHHHH--HHHCCC-CCEEEEE
T ss_conf 3750799996565--42223334221689974010254999--970177-9699999
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.07 E-value=6.4e-10 Score=73.38 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88888999999999856999399937575618999999986498996999997398208999999965899439998379
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEA 103 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA 103 (218)
+..|.....+-..+......+||||||++|| .|..||.. .++ |+++|.+++....++.+....-.+++++||+
T Consensus 53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy--~ta~La~l----~~~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~ 125 (224)
T d1vbfa_ 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGY--YTALIAEI----VDK-VVSVEINEKMYNYASKLLSYYNNIKLILGDG 125 (224)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSH--HHHHHHHH----SSE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCG
T ss_pred EEHHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHH----HCC-CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 1121567899987642366339996698787--89999997----362-4432365999999999873434333214742
Q ss_pred CCHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 9501108999811899808966829999975-498998499981
Q 027826 104 DDEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 104 ~~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
....+.-.+||.|++.+.-+..++.| . .|.+ ||.+|+-
T Consensus 126 --~~g~~~~~pfD~Iiv~~a~~~ip~~l--~~qLk~-GGrLV~p 164 (224)
T d1vbfa_ 126 --TLGYEEEKPYDRVVVWATAPTLLCKP--YEQLKE-GGIMILP 164 (224)
T ss_dssp --GGCCGGGCCEEEEEESSBBSSCCHHH--HHTEEE-EEEEEEE
T ss_pred --HHCCHHHHHHHHHHHHCCHHHHHHHH--HHHCCC-CCEEEEE
T ss_conf --20432333677877624511311779--986298-9789999
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.1e-10 Score=75.18 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=82.0
Q ss_pred HHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH-HCCCCEEEEECCCCCH
Q ss_conf 99999999856--99939993757561899999998649899699999739820899999996-5899439998379950
Q 027826 30 AELVSAMAAGW--DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDE 106 (218)
Q Consensus 30 g~fL~~L~~~~--~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~-~agl~I~~i~GdA~~~ 106 (218)
..++..|+... ..++|||||+++|+ ++..+|+. ...+ ++.+|.++.....++... ..+..+.++.+++ .
T Consensus 40 ~~~~~~la~~~~~~g~~VLdIGcG~G~--~a~~~a~~---~~~~-v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~--~ 111 (229)
T d1zx0a1 40 TPYMHALAAAASSKGGRVLEVGFGMAI--AASKVQEA---PIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW--E 111 (229)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECCTTSH--HHHHHHTS---CEEE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCH--H
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCHH--HHHHHHHC---CCCE-EEEECCCHHHHHHHHHHHHHCCCCCCCCCCCC--C
T ss_conf 999999997636688818985052308--89999871---8776-99967999999999997453444321222232--2
Q ss_pred HHCCCCC--CCCEEEEECCCCCC--------HHHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf 1108999--81189980896682--------9999975-498998499981887778
Q 027826 107 ELMDGLV--DIDFLVVDSRRKDF--------ARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 107 e~L~~l~--~~DfVFIDa~K~~Y--------~~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
+....+. +||.+|+|+....+ ..+++.+ +++++||++++.|..+.+
T Consensus 112 ~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~ 168 (229)
T d1zx0a1 112 DVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG 168 (229)
T ss_dssp HHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 111234446545123214321024222267999999999875899689998268751
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2.2e-09 Score=70.29 Aligned_cols=122 Identities=14% Similarity=0.031 Sum_probs=89.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEE
Q ss_conf 7888889999999998569993999375756189999999864989969999973982089999999-658994--3999
Q 027826 23 LSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVI 99 (218)
Q Consensus 23 ~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i 99 (218)
.+.+++..+.|..++.....++||||||++|+ .+..|+.. .+.+ ++-++.++.+.+.++.. ...|+. |+|+
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~--~~~~la~~---~~~~-v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~ 88 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGE--MLCTWARD---HGIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFI 88 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCH--HHHHHHHH---TCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHHH---CCCE-EEEEECCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99989999999997089998989998078889--99999986---6987-999962410236788877875123530355
Q ss_pred ECCCCCHHHCCCCCCCCEEEEE---CCCCCCHHHHHHH-CCCCCCEEEEEECCCCCCC
Q ss_conf 8379950110899981189980---8966829999975-4989984999818877784
Q 027826 100 TGEADDEELMDGLVDIDFLVVD---SRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND 153 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~~DfVFID---a~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G~ 153 (218)
++|+ .+..+. .+||+|+.= ..-.+....++.+ +.+++||.+++.+..+...
T Consensus 89 ~~d~--~~~~~~-~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~ 143 (245)
T d1nkva_ 89 HNDA--AGYVAN-EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL 143 (245)
T ss_dssp ESCC--TTCCCS-SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTC
T ss_pred HHHH--HHCCCC-CCEEEEEEEEHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 6677--651556-743699998303216887898999998708386899985654678
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.92 E-value=9e-10 Score=72.53 Aligned_cols=108 Identities=18% Similarity=0.332 Sum_probs=79.2
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EEEEECCCCCHH
Q ss_conf 999999985699939993757561899999998649899699999739820899999-99658994--399983799501
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEADDEE 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~~i~GdA~~~e 107 (218)
.+..+|-...+-++||++|+++|. -+ +..+.+ |.+-++.+|.+++.....+ ++...++. ++++.+|+ .+
T Consensus 4 ~~fn~l~~~~~g~~vlDl~~GtG~--~~--iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~--~~ 75 (152)
T d2esra1 4 AIFNMIGPYFNGGRVLDLFAGSGG--LA--IEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA--ER 75 (152)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCH--HH--HHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH--HH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCH--HH--HHHHHH--CCCEEEEEHHCHHHHHHHHHHHHHCCCCCCHHHHCCCC--CC
T ss_conf 999887866799969991782079--99--999872--76405531116244321003222013332011210232--21
Q ss_pred HCCCCC-CCCEEEEECC--CCCCHHHHHHH---CCCCCCEEEEEE
Q ss_conf 108999-8118998089--66829999975---498998499981
Q 027826 108 LMDGLV-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l~-~~DfVFIDa~--K~~Y~~~~~~~---~L~~~GgiIv~D 146 (218)
.++... +||+||+|.. +..|.+.++.+ +++.++|+|++.
T Consensus 76 ~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 76 AIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp HHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CCCCCCCCCCEEEECHHHCCCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 001222334326762221010699999999987983898599998
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=2.2e-09 Score=70.35 Aligned_cols=114 Identities=20% Similarity=0.217 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EEEEECCC
Q ss_conf 89999999998569-9939993757561899999998649899699999739820899999-99658994--39998379
Q 027826 28 GVAELVSAMAAGWD-ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGEA 103 (218)
Q Consensus 28 ~~g~fL~~L~~~~~-ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~~i~GdA 103 (218)
++..--.++.+..+ .++||++++++|. .++.+|.+ . ..+ |+.++.++.....++ ++...|+. +++++||+
T Consensus 131 Dqr~~r~~~~~~~~~g~~VLDl~~g~G~--~si~~a~~--g-a~~-V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~ 204 (324)
T d2as0a2 131 DQRENRLALEKWVQPGDRVLDVFTYTGG--FAIHAAIA--G-ADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA 204 (324)
T ss_dssp TTHHHHHHHGGGCCTTCEEEETTCTTTH--HHHHHHHT--T-CSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred CHHHHHHHHHHHCCCCCEEECCCCCCCC--HHHHHHHC--C-CCE-EEEECCCHHHHHHHHHHHHHCCCCCCCEEEECHH
T ss_conf 1136889988645899754114675160--53411435--8-868-9960388999999999999829983334650446
Q ss_pred CCHHHCCCC----CCCCEEEEECCC------------CCCHHHHHHH-CCCCCCEEEEEECCC
Q ss_conf 950110899----981189980896------------6829999975-498998499981887
Q 027826 104 DDEELMDGL----VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 104 ~~~e~L~~l----~~~DfVFIDa~K------------~~Y~~~~~~~-~L~~~GgiIv~DNvl 149 (218)
.+.+..+ .+||+|++|... ..|.+++..+ +++++||++++-+-.
T Consensus 205 --~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 205 --FEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp --HHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred --HHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf --6656888863679981201772124788789999999999999999971899589999588
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.77 E-value=1.7e-08 Score=65.29 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCCEEEEECCCC
Q ss_conf 889999999998569-993999375756189999999864989969999973982089999999-658994399983799
Q 027826 27 SGVAELVSAMAAGWD-ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~~~-ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~I~~i~GdA~ 104 (218)
|.+.-.|..|.+..+ .++||++||++|+ .++.+++ .+.++ +.++.+++....++.+ ...++.+++++++.
T Consensus 105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~--l~i~aa~----~g~~V-~gvDis~~av~~A~~na~~n~~~~~~~~~d~- 176 (254)
T d2nxca1 105 ETTRLALKALARHLRPGDKVLDLGTGSGV--LAIAAEK----LGGKA-LGVDIDPMVLPQAEANAKRNGVRPRFLEGSL- 176 (254)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEETCTTSH--HHHHHHH----TTCEE-EEEESCGGGHHHHHHHHHHTTCCCEEEESCH-
T ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCHHH--HHHHHHH----CCCEE-EEEECCHHHHHHHHHHHHHCCCCEEEEECCC-
T ss_conf 22567777777516766779984552658--8999996----29989-9997986899999999987598326786143-
Q ss_pred CHHHCCCCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECCCC
Q ss_conf 501108999811899808966829999975-4989984999818877
Q 027826 105 DEELMDGLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 105 ~~e~L~~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~ 150 (218)
.+.++. .+||+|+.........++++.+ +.+++||.++.-.++.
T Consensus 177 -~~~~~~-~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil~ 221 (254)
T d2nxca1 177 -EAALPF-GPFDLLVANLYAELHAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp -HHHGGG-CCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred -CCCCCC-CCCCHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf -345542-232022220243207999999998668885999982655
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.77 E-value=3.3e-08 Score=63.67 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=74.3
Q ss_pred HHHHHH----HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCEEEEECCCCCH
Q ss_conf 999999----856999399937575618999999986498996999997398208999999-965899439998379950
Q 027826 32 LVSAMA----AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEADDE 106 (218)
Q Consensus 32 fL~~L~----~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~I~~i~GdA~~~ 106 (218)
++..|+ +..+|++|||+||++|+ .++.|+...+ .+++ ++.++.++.....++. ....++.++++.+|+ .
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~--~~~~la~~~~-~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~--~ 87 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGY--LGLVLMPLLP-EGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDA--T 87 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTH--HHHHHTTTSC-TTCE-EEEEECCHHHHHHHHHHHHSSSSEEEEEESCT--T
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHCC-CCCE-EEEEECCHHHHHHHHCCCCCCCCCCCCCCCCC--C
T ss_conf 999999987435996989996596889--9999998577-9988-99994601676641023222233321000122--2
Q ss_pred HHCCCCCCCCEEEEECCCC---CCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 1108999811899808966---829999975-498998499981
Q 027826 107 ELMDGLVDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 107 e~L~~l~~~DfVFIDa~K~---~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
+. +--++||+|+.-.--+ +-...++.+ +.+++||.+++-
T Consensus 88 ~~-~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~ 130 (281)
T d2gh1a1 88 EI-ELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICF 130 (281)
T ss_dssp TC-CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEE
T ss_pred CC-CCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 35-65677618998303324778999999999971859689999
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=4.5e-08 Score=62.91 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=73.8
Q ss_pred HHHHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCCEEEEECCCC
Q ss_conf 99999999985---69993999375756189999999864989969999973982089999999-658994399983799
Q 027826 29 VAELVSAMAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~~---~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~I~~i~GdA~ 104 (218)
...++..+.+. .++++|||+||++|- .++.|+.. +.+ ++.++.++++...++.. .+.++.++++.+|+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~iLDiGcGtG~--~~~~l~~~----~~~-v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~- 97 (251)
T d1wzna1 26 EIDFVEEIFKEDAKREVRRVLDLACGTGI--PTLELAER----GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDV- 97 (251)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCH--HHHHHHHT----TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCHHHCCC----CEE-EEEEEECCCCCCCCCCCCCCCCCCCHHEEHHH-
T ss_conf 99999999998437899999995788981--11121002----617-88896112221122222222233100000012-
Q ss_pred CHHHCCCCCCCCEEEEECCC------CCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 50110899981189980896------6829999975-4989984999818
Q 027826 105 DEELMDGLVDIDFLVVDSRR------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 105 ~~e~L~~l~~~DfVFIDa~K------~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
.++-.. ++||+|++=..- ++....++.+ +.+++||++++|=
T Consensus 98 -~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 98 -LEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp -GGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -HHCCCC-CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf -201455-354467664221330776789999999999759881999996
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=2e-08 Score=64.94 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=73.6
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-H--HCCC----CEEEEECCCCCHHH
Q ss_conf 998569993999375756189999999864989969999973982089999999-6--5899----43999837995011
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G--EAGF----SPQVITGEADDEEL 108 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~--~agl----~I~~i~GdA~~~e~ 108 (218)
++...+||+||.+|.+.|. ++-.+.+ ..+..+ |+.+|.+++..+.++.+ . ..+. .++++.+|| .+.
T Consensus 72 l~~~~~pk~VLiiG~G~G~--~~~~ll~--~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da--~~~ 144 (312)
T d1uira_ 72 MLTHPEPKRVLIVGGGEGA--TLREVLK--HPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA--RAY 144 (312)
T ss_dssp HHHSSCCCEEEEEECTTSH--HHHHHTT--STTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH--HHH
T ss_pred HHHCCCCCEEEEECCCCHH--HHHHHHH--CCCCCE-EEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECHH--HHH
T ss_conf 6528886658983799669--9999985--599645-99854887899999752840135756788429998609--998
Q ss_pred CCCCC-CCCEEEEECCC---------CCC-HHHHHHH-CCCCCCEEEEEE
Q ss_conf 08999-81189980896---------682-9999975-498998499981
Q 027826 109 MDGLV-DIDFLVVDSRR---------KDF-ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~~DfVFIDa~K---------~~Y-~~~~~~~-~L~~~GgiIv~D 146 (218)
|.+.+ .||+|++|..- ..| .++|+.+ +.+++||++++-
T Consensus 145 l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~ 194 (312)
T d1uira_ 145 LERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (312)
T ss_dssp HHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 63067761489994777545564156663699999999734899469995
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.74 E-value=7e-09 Score=67.49 Aligned_cols=113 Identities=14% Similarity=0.291 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EEEEECC
Q ss_conf 88899999999985699939993757561899999998649899699999739820899999-99658994--3999837
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITGE 102 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~~i~Gd 102 (218)
+..-.++..+|.....-++||++.+++|. -+ +..+.+ |.+.++.+|.+++....++ ++...+.. ++++.+|
T Consensus 26 ~~vrealFn~l~~~~~~~~vLDlfaGsG~--~g--~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D 99 (182)
T d2fhpa1 26 DKVKESIFNMIGPYFDGGMALDLYSGSGG--LA--IEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD 99 (182)
T ss_dssp HHHHHHHHHHHCSCCSSCEEEETTCTTCH--HH--HHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCCC--CC--CEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89999999998876289889970565444--13--023321--0468888888888999998876421001210000233
Q ss_pred CCCHHHCCCC----CCCCEEEEECC--CCCCHHHHHHH---CCCCCCEEEEEE
Q ss_conf 9950110899----98118998089--66829999975---498998499981
Q 027826 103 ADDEELMDGL----VDIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCK 146 (218)
Q Consensus 103 A~~~e~L~~l----~~~DfVFIDa~--K~~Y~~~~~~~---~L~~~GgiIv~D 146 (218)
+ .+.|+++ .+||+||+|-. +..|.+.++.+ .++.++|+|++-
T Consensus 100 ~--~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 100 A--NRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp H--HHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred C--HHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 1--01333100357776437864055514899999999977998899799998
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=7e-09 Score=67.47 Aligned_cols=105 Identities=18% Similarity=0.251 Sum_probs=75.8
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC-EEEEECCCCCHHHCCC
Q ss_conf 9999856999399937575618999999986498996999997398208999999-9658994-3999837995011089
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS-PQVITGEADDEELMDG 111 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~-I~~i~GdA~~~e~L~~ 111 (218)
+.+++....++||++++++|. .++.+|.. +.+ |+.++.++.....++. ....|+. ++++.+|+ .+.++.
T Consensus 138 r~~~~~~~g~rVLDl~~gtG~--~s~~~a~g----~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~--~~~~~~ 208 (318)
T d1wxxa2 138 RLYMERFRGERALDVFSYAGG--FALHLALG----FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANA--FDLLRR 208 (318)
T ss_dssp HHHGGGCCEEEEEEETCTTTH--HHHHHHHH----EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH--HHHHHH
T ss_pred HHHHHHHCCCEEECCCCCCCH--HHHHHHHC----CCC-EEEECCHHHHHHHHHHHHHHCCCCCCCEEECCH--HHHHHH
T ss_conf 778987289906625788758--99998845----772-785102699999999999983888764243419--988654
Q ss_pred C----CCCCEEEEECCC------------CCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 9----981189980896------------6829999975-4989984999818
Q 027826 112 L----VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 112 l----~~~DfVFIDa~K------------~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
+ .+||+|++|... ..|.+.+..+ +++++||++++-.
T Consensus 209 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s 261 (318)
T d1wxxa2 209 LEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS 261 (318)
T ss_dssp HHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 57660689889984786566647899999999999999997768898899996
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.73 E-value=2.3e-08 Score=64.52 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCCC
Q ss_conf 89999999998569993999375756189999999864989969999973982089999999-658994-3999837995
Q 027826 28 GVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADD 105 (218)
Q Consensus 28 ~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~~ 105 (218)
+.+++|.. +...+.++|||||+++|. .+..|+. .+.+ ++.++.++++...|+.. ...++. ++++++|+
T Consensus 3 ~~~~ll~~-~~l~~~~rVLDiGcG~G~--~~~~l~~----~~~~-v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-- 72 (231)
T d1vl5a_ 3 DLAKLMQI-AALKGNEEVLDVATGGGH--VANAFAP----FVKK-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-- 72 (231)
T ss_dssp CHHHHHHH-HTCCSCCEEEEETCTTCH--HHHHHGG----GSSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--
T ss_pred HHHHHHHH-CCCCCCCEEEEECCCCCH--HHHHHHH----HCCE-EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCC--
T ss_conf 69999996-399982999995366859--9999997----3998-999989889986655023332222222233332--
Q ss_pred HHHCC-CCCCCCEEEEECCCC---CCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 01108-999811899808966---829999975-4989984999818
Q 027826 106 EELMD-GLVDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 106 ~e~L~-~l~~~DfVFIDa~K~---~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
.+ ++ .-.+||+|+.-..-+ +....+..+ +++++||.+++..
T Consensus 73 ~~-l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 73 EQ-MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp -C-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 22-22222333333321012346789999999998538880899996
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.70 E-value=7.9e-08 Score=61.50 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCC
Q ss_conf 889999999998569993999375756189999999864989969999973982089999999-658994-399983799
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~ 104 (218)
+....+|...+....-.+|||+||++|. .+..|+.. +++ ++.++.++.+.+.|+.. ...++. +.++++|+
T Consensus 2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~--~~~~la~~----~~~-v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~- 73 (234)
T d1xxla_ 2 HHSLGLMIKTAECRAEHRVLDIGAGAGH--TALAFSPY----VQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTA- 73 (234)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSH--HHHHHGGG----SSE-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-
T ss_pred CHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHH----CCE-EEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 0699999997589998989995781849--99999982----996-999948714302333100001233222333322-
Q ss_pred CHHHCC-CCCCCCEEEEECCCC---CCHHHHHHH-CCCCCCEEEEE-ECC
Q ss_conf 501108-999811899808966---829999975-49899849998-188
Q 027826 105 DEELMD-GLVDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVC-KNA 148 (218)
Q Consensus 105 ~~e~L~-~l~~~DfVFIDa~K~---~Y~~~~~~~-~L~~~GgiIv~-DNv 148 (218)
.+ ++ .-.+||+|+.-..-. +-..+++.+ +++++||.+++ +..
T Consensus 74 -~~-~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 74 -ES-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp -TB-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CC-CCCCCCCCCEEEEECEEECCCCHHHHHHHHHHEECCCCEEEEEECC
T ss_conf -22-3455545433321010311568999999997745878189999847
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.65 E-value=1e-07 Score=60.86 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCEEEEECCC
Q ss_conf 88999999999856--999399937575618999999986498996999997398208999999-965899439998379
Q 027826 27 SGVAELVSAMAAGW--DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEA 103 (218)
Q Consensus 27 p~~g~fL~~L~~~~--~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~I~~i~GdA 103 (218)
+...+|+..++... .+++|||+||++|- -++.|+.. +.+ ++-++.++.+...|+. ....++.++++++|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~vLDiGCG~G~--~~~~l~~~----g~~-v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~ 93 (246)
T d1y8ca_ 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGN--LTENLCPK----FKN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTST--THHHHGGG----SSE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHH----CCC-CEEECCCHHHHHHCCCCCCCCCCCCEEECCCH
T ss_conf 999999999999719998939998686889--99999970----985-07633220124420021023676310010454
Q ss_pred CCHHHCCCCCCCCEEEEECC-------CCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 95011089998118998089-------66829999975-498998499981
Q 027826 104 DDEELMDGLVDIDFLVVDSR-------RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 104 ~~~e~L~~l~~~DfVFIDa~-------K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
.+.- --++||+|+.=.. ..+-..+|+.+ +++++||++++|
T Consensus 94 --~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 94 --SNLN-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp --GGCC-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --HHHC-CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf --5410-13202344110022103587779999999999857998699999
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=1.3e-07 Score=60.33 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCC-EEEEECCCCCHHHCCCCC--CC
Q ss_conf 69993999375756189999999864989969999973982089999-999658994-399983799501108999--81
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITGEADDEELMDGLV--DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~-I~~i~GdA~~~e~L~~l~--~~ 115 (218)
.....||||||+.|. .++.||...+ +..++ -+|..+.....+ +...+.++. |.++.||| ..++..+. ++
T Consensus 28 ~~~PlvLeIGcG~G~--~~~~lA~~~p--~~~~i-GiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da--~~l~~~~~~~~~ 100 (204)
T d2fcaa1 28 NDNPIHIEVGTGKGQ--FISGMAKQNP--DINYI-GIELFKSVIVTAVQKVKDSEAQNVKLLNIDA--DTLTDVFEPGEV 100 (204)
T ss_dssp SCCCEEEEECCTTSH--HHHHHHHHCT--TSEEE-EECSCHHHHHHHHHHHHHSCCSSEEEECCCG--GGHHHHCCTTSC
T ss_pred CCCCEEEEEEECCCH--HHHHHHHHCC--CCCEE-EEECCHHHHHHHHHHHHHHHCCCCHHCCCCH--HHHHCCCCCHHH
T ss_conf 999559999731939--9999998689--98188-7633267778999999987504732101301--321013674032
Q ss_pred CEEEEECCCC----C-------CHHHHHHH-CCCCCCEEEEE
Q ss_conf 1899808966----8-------29999975-49899849998
Q 027826 116 DFLVVDSRRK----D-------FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~K~----~-------Y~~~~~~~-~L~~~GgiIv~ 145 (218)
|.|++-..-. . .+++++.+ +++++||++.+
T Consensus 101 d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 101 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred HCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 101014665441022010344378899999984797767999
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.64 E-value=8.3e-08 Score=61.40 Aligned_cols=107 Identities=8% Similarity=0.070 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC---EEEEECCCC
Q ss_conf 999999999856999399937575618999999986498996999997398208999999-9658994---399983799
Q 027826 29 VAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS---PQVITGEAD 104 (218)
Q Consensus 29 ~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~---I~~i~GdA~ 104 (218)
..++|...+...+.++|||+||++|+ .++.+|.. +.+ ++.++.++.....++. ....++. ++++.+|.
T Consensus 40 ~t~lLi~~l~~~~~~~VLDiGcG~G~--~~~~la~~----~~~-v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~- 111 (194)
T d1dusa_ 40 GTKILVENVVVDKDDDILDLGCGYGV--IGIALADE----VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL- 111 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSH--HHHHHGGG----SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST-
T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCH--HHHHHHHH----CCC-CCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCH-
T ss_conf 99999983774889829999511786--27888751----013-41131000100167777887377652289997124-
Q ss_pred CHHHCCCCCCCCEEEEECCCCC----CHHHHHHH-CCCCCCEEEEE
Q ss_conf 5011089998118998089668----29999975-49899849998
Q 027826 105 DEELMDGLVDIDFLVVDSRRKD----FARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 105 ~~e~L~~l~~~DfVFIDa~K~~----Y~~~~~~~-~L~~~GgiIv~ 145 (218)
.+.++. ++||+|+.+..-.. ...+++.+ +++++||.+++
T Consensus 112 -~~~~~~-~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 112 -YENVKD-RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp -TTTCTT-SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -HHHHCC-CCCEEEEECCCEEECCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf -553136-77529998664786121346689999985086849999
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.61 E-value=2.2e-07 Score=59.04 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC-EEEEECCCC
Q ss_conf 8899999999985699939993757561899999998649899699999739820899999-99658994-399983799
Q 027826 27 SGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS-PQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~-I~~i~GdA~ 104 (218)
..-..+..+|-....-.++|++++++|. -+ +..+.+ |+..++.+|.+.+.....+ ++...+.. ++++.+|+
T Consensus 29 ~vre~lfn~l~~~~~~~~vLDlfaGsG~--~g--iealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~- 101 (183)
T d2fpoa1 29 RVRETLFNWLAPVIVDAQCLDCFAGSGA--LG--LEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA- 101 (183)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETTCTTCH--HH--HHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCC--EE--EEEEEC--CCCEEEEEEEEECHHHHHHHHHHHCCCCCEEEEEECC-
T ss_conf 9999997341013303253343113343--34--667743--7621579997313056788777640343304663022-
Q ss_pred CHHHCCCCC-CCCEEEEECC--CCCCHHHHHHH---CCCCCCEEEEEE
Q ss_conf 501108999-8118998089--66829999975---498998499981
Q 027826 105 DEELMDGLV-DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCK 146 (218)
Q Consensus 105 ~~e~L~~l~-~~DfVFIDa~--K~~Y~~~~~~~---~L~~~GgiIv~D 146 (218)
.+.+.... +||+||+|-. +..|.+.++.+ .+..++|+|++-
T Consensus 102 -~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 102 -MSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -HHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf -32212454326789982744356399999999978887998299999
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=1.5e-07 Score=59.96 Aligned_cols=103 Identities=14% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHH-H--HCCCC---EEEEECCCCCHHH
Q ss_conf 99856999399937575618999999986498-9969999973982089999999-6--58994---3999837995011
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHAL-G--EAGFS---PQVITGEADDEEL 108 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~-~~g~vi~t~e~~~~~~~~a~~~-~--~agl~---I~~i~GdA~~~e~ 108 (218)
++..-+|++||-+|.+.|. ++ ...+.. +..+ |+.+|.+++....++.+ . ..++. ++++.+|| .+.
T Consensus 84 l~~~~~pk~VLiiGgG~G~--~~---r~~l~~~~~~~-i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da--~~~ 155 (295)
T d1inla_ 84 MFLHPNPKKVLIIGGGDGG--TL---REVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG--AEY 155 (295)
T ss_dssp HHHSSSCCEEEEEECTTCH--HH---HHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHH
T ss_pred HHHCCCCCEEEEECCCCHH--HH---HHHHHCCCCCE-EEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHH--HHH
T ss_conf 7648997658995698469--99---99985499744-9984588899999998887521222577737983548--999
Q ss_pred CCCCC-CCCEEEEECCCC-------C-CHHHHHHH--CCCCCCEEEEEEC
Q ss_conf 08999-811899808966-------8-29999975--4989984999818
Q 027826 109 MDGLV-DIDFLVVDSRRK-------D-FARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 109 L~~l~-~~DfVFIDa~K~-------~-Y~~~~~~~--~L~~~GgiIv~DN 147 (218)
|.+.+ .||.|++|+.-. . -.++|+.+ .|.+ ||++++--
T Consensus 156 l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~-~Gi~v~q~ 204 (295)
T d1inla_ 156 VRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKE-DGVFSAET 204 (295)
T ss_dssp GGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEE-EEEEEEEC
T ss_pred HHCCCCCCCEEEECCCCCCCCCHHHHCCHHHHHHHHHHCCC-CCEEEEEC
T ss_conf 75087777789990777776732544139999998862289-96799942
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.56 E-value=7.5e-08 Score=61.64 Aligned_cols=113 Identities=12% Similarity=0.218 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC---EEEEEC
Q ss_conf 889999999998-5699939993757561899999998649899699999739820899999-99658994---399983
Q 027826 27 SGVAELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS---PQVITG 101 (218)
Q Consensus 27 p~~g~fL~~L~~-~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~---I~~i~G 101 (218)
.++-+.-+.+++ ....++||.+.+++|. -++..|. . +.+.|+.++.++.....++ ++...++. ++++.+
T Consensus 129 lDqR~~r~~l~~~~~~g~~VLdlf~~~G~--~sl~aa~--~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~ 202 (317)
T d2b78a2 129 LDQRQVRNELINGSAAGKTVLNLFSYTAA--FSVAAAM--G--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM 202 (317)
T ss_dssp GGGHHHHHHHHHTTTBTCEEEEETCTTTH--HHHHHHH--T--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCH--HHHHHHH--C--CCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 77899999999986179816533777758--9999876--8--9716898427778999999988873046763698972
Q ss_pred CCCCHHHCCCC----CCCCEEEEECCC------------CCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 79950110899----981189980896------------6829999975-4989984999818
Q 027826 102 EADDEELMDGL----VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 102 dA~~~e~L~~l----~~~DfVFIDa~K------------~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
|+ .+.|+.+ ..||+|++|-.. ..|.+.++.+ +++++||++++-.
T Consensus 203 d~--~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 203 DV--FDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp CH--HHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CH--HHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 59--99999988604777779974723134315789999899999999999729998899994
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.55 E-value=3.4e-07 Score=57.93 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=74.4
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC-CCEEEEEECCCCCHHHHHHHHH---HCCCC---EEEEECCCCCHHH
Q ss_conf 998569993999375756189999999864989-9699999739820899999996---58994---3999837995011
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHT-GGRHVCLVPDERSRSEYVHALG---EAGFS---PQVITGEADDEEL 108 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~-~g~vi~t~e~~~~~~~~a~~~~---~agl~---I~~i~GdA~~~e~ 108 (218)
+....+|++||-+|.+.|. ++ ...+... ..+ |+.+|.+++...+++.+. ...+. ++++.+|| .+.
T Consensus 70 l~~~~~p~~vLiiGgG~G~--~~---~~~l~~~~~~~-i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~--~~~ 141 (274)
T d1iy9a_ 70 LFTHPNPEHVLVVGGGDGG--VI---REILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG--FMH 141 (274)
T ss_dssp HHHSSSCCEEEEESCTTCH--HH---HHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS--HHH
T ss_pred HHCCCCCCEEEECCCCCCH--HH---HHHHHCCCCCE-EEEECCCHHHHHHHHHHCHHHCCCCCCCCEEEEECHH--HHH
T ss_conf 3305786337752788719--99---99984699415-8885488899999987571212421378718996368--999
Q ss_pred CCCCC-CCCEEEEECCCCC-------CHHHHHHH--CCCCCCEEEEEEC
Q ss_conf 08999-8118998089668-------29999975--4989984999818
Q 027826 109 MDGLV-DIDFLVVDSRRKD-------FARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 109 L~~l~-~~DfVFIDa~K~~-------Y~~~~~~~--~L~~~GgiIv~DN 147 (218)
|.+.+ .||+|++|+.-.. -.++|+.+ .|.+ +|+++.-.
T Consensus 142 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~-~Gv~v~q~ 189 (274)
T d1iy9a_ 142 IAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE-DGIFVAQT 189 (274)
T ss_dssp HHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE-EEEEEEEC
T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCC-CCEEEEEC
T ss_conf 8625787788998289988741655139999998765279-95699946
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.52 E-value=2.9e-07 Score=58.29 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=73.6
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH--HCC---------CC-EEEEECC
Q ss_conf 99985699939993757561899999998649899699999739820899999996--589---------94-3999837
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG--EAG---------FS-PQVITGE 102 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~--~ag---------l~-I~~i~Gd 102 (218)
.+....+|++||.+|.+.|. ++-.+ +.....+ |+.+|.+++....++.+. ..+ -. ++++.+|
T Consensus 66 ~l~~~~~p~~vLiiG~G~G~--~~~~~---l~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~D 139 (276)
T d1mjfa_ 66 AMLAHPKPKRVLVIGGGDGG--TVREV---LQHDVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGD 139 (276)
T ss_dssp HHHHSSCCCEEEEEECTTSH--HHHHH---TTSCCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESC
T ss_pred HHHCCCCCCEEEEECCCCHH--HHHHH---HHHCCCE-EEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEECH
T ss_conf 64428887658995599609--99999---9707742-798438989999999863224313566513579973699770
Q ss_pred CCCHHHCCCCCCCCEEEEECCCCCC-------HHHHHHH--CCCCCCEEEEEE
Q ss_conf 9950110899981189980896682-------9999975--498998499981
Q 027826 103 ADDEELMDGLVDIDFLVVDSRRKDF-------ARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 103 A~~~e~L~~l~~~DfVFIDa~K~~Y-------~~~~~~~--~L~~~GgiIv~D 146 (218)
| .+.+.+-+.||+|++|+.-... .++|+.+ .|.+ +|++++.
T Consensus 140 a--~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~-~Gv~v~q 189 (276)
T d1mjfa_ 140 G--FEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNN-PGIYVTQ 189 (276)
T ss_dssp H--HHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEE-EEEEEEE
T ss_pred H--HHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEEEE
T ss_conf 9--999853678788999378887775333479999865752489-9669995
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.49 E-value=1.1e-06 Score=54.98 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=69.0
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH-HHHHHHCCCC--EEEEECCCCCHHHCCCCCCC
Q ss_conf 56999399937575618999999986498996999997398208999-9999658994--39998379950110899981
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~-a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~ 115 (218)
..+.++||+||+++|. .++.|+...+ +.+ ++.++. ++.... ++.+...++. |+++.||. .+..+ .+|
T Consensus 78 ~~~~~~VLDvGcG~G~--~~~~la~~~p--~~~-~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~--~~~~~--~~~ 147 (253)
T d1tw3a2 78 WTNVRHVLDVGGGKGG--FAAAIARRAP--HVS-ATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF--FEPLP--RKA 147 (253)
T ss_dssp CTTCSEEEEETCTTSH--HHHHHHHHCT--TCE-EEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT--TSCCS--SCE
T ss_pred CCCCCEEEEECCCCCH--HHHHHHHHCC--EEE-EEECCC-HHHHHHHHHHHHHHHCCCCHHHCCCCC--HHHCC--CCH
T ss_conf 7668789996898988--7899997456--368-998248-788899999999863133101100220--01113--320
Q ss_pred CEEEEECCCCCC-----HHHHHHH-CCCCCCE-EEEEECCCC
Q ss_conf 189980896682-----9999975-4989984-999818877
Q 027826 116 DFLVVDSRRKDF-----ARVLRLA-NLSSRGA-VLVCKNAYS 150 (218)
Q Consensus 116 DfVFIDa~K~~Y-----~~~~~~~-~L~~~Gg-iIv~DNvl~ 150 (218)
|.|++=.--+++ ...++.+ +.+++|| ++|.|....
T Consensus 148 D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~ 189 (253)
T d1tw3a2 148 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL 189 (253)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC
T ss_pred HHEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 100102344457806667789999985698727999961578
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.49 E-value=1.6e-06 Score=54.06 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCC-EEEEECCCCCHHHCCCCC--CC
Q ss_conf 69993999375756189999999864989969999973982089999-999658994-399983799501108999--81
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS-PQVITGEADDEELMDGLV--DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~-I~~i~GdA~~~e~L~~l~--~~ 115 (218)
.....||||||+.|- ..+.+|+..+ +..+|.+ |..+.....+ +...+.+++ |.++.+|| .++++.++ ++
T Consensus 30 ~~~plvLdIGcG~G~--~~~~lA~~~p--~~~~iGi-d~~~~~v~~a~~~~~~~~l~Ni~~~~~da--~~l~~~~~~~~~ 102 (204)
T d1yzha1 30 NDNPIHVEVGSGKGA--FVSGMAKQNP--DINYIGI-DIQKSVLSYALDKVLEVGVPNIKLLWVDG--SDLTDYFEDGEI 102 (204)
T ss_dssp SCCCEEEEESCTTSH--HHHHHHHHCT--TSEEEEE-ESCHHHHHHHHHHHHHHCCSSEEEEECCS--SCGGGTSCTTCC
T ss_pred CCCCEEEEEECCCCH--HHHHHHHHCC--CCCEEEE-ECCHHHHHHHHHHHHHHCCCCCEEEECCH--HHHHHHCCCCCE
T ss_conf 999739999402878--9999999789--9965878-65688789999766520345400451679--997420567703
Q ss_pred CEEEEE---CC-CC-------CCHHHHHHH-CCCCCCEEEE
Q ss_conf 189980---89-66-------829999975-4989984999
Q 027826 116 DFLVVD---SR-RK-------DFARVLRLA-NLSSRGAVLV 144 (218)
Q Consensus 116 DfVFID---a~-K~-------~Y~~~~~~~-~L~~~GgiIv 144 (218)
|.|++= -+ |. -..++++.+ +++++||.+.
T Consensus 103 ~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 103 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred EHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 00012365323320000156637889999997388774899
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.48 E-value=5.4e-07 Score=56.78 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=65.3
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCCCHHHHHHHHHHCCCC--EEEEECCCCCHHHCCCCCCC
Q ss_conf 5699939993757561899999998649899-69999973982089999999658994--39998379950110899981
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTG-GRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~-g~vi~t~e~~~~~~~~a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~ 115 (218)
..+-+.||++|+++|. .++.+|++ | .+ |+.+|.++....+++.....++. |+++.|++ .++-...+.|
T Consensus 31 ~~~~~~VLDiGcG~G~--ls~~aa~~----Ga~~-V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~--~~~~~~~~~~ 101 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGI--LCMFAAKA----GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKV--EEVELPVEKV 101 (316)
T ss_dssp HHTTCEEEEETCTTSH--HHHHHHHT----TCSE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT--TTCCCSSSCE
T ss_pred CCCCCEEEEEECCCCH--HHHHHHHH----CCCE-EEEECCCHHHHHHHHHHHHHCCCCCCCEEECCH--HHCCCCCCEE
T ss_conf 4791989998067859--99999982----8988-999868678866655898828864330676317--8755454205
Q ss_pred CEEEEECC------CCCCHHHHHHH-CCCCCCEEEEE
Q ss_conf 18998089------66829999975-49899849998
Q 027826 116 DFLVVDSR------RKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa~------K~~Y~~~~~~~-~L~~~GgiIv~ 145 (218)
|.|+.+.- ......+++.+ +++++||.++-
T Consensus 102 D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 102 DIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp EEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 7885420002303077899999999853799869993
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.48 E-value=1.3e-06 Score=54.70 Aligned_cols=106 Identities=12% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCCCHHH
Q ss_conf 99999998569993999375756189999999864989969999973982089999999-658994-3999837995011
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEEL 108 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~~~e~ 108 (218)
.++. .+...++.+|||+||++|. .+++|+.. +-+ ++.++.++...+.++.. ...++. +++..+|. .+.
T Consensus 21 ~~~~-~~~~~~~grvLDiGcG~G~--~~~~la~~----g~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~--~~~ 90 (198)
T d2i6ga1 21 DVLA-AAKVVAPGRTLDLGCGNGR--NSLYLAAN----GYD-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDL--NTL 90 (198)
T ss_dssp HHHH-HHTTSCSCEEEEETCTTSH--HHHHHHHT----TCE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT--TTC
T ss_pred HHHH-HCCCCCCCCEEEECCCCCH--HHHHHHHH----HHH-HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHEEC--CCC
T ss_conf 9999-7154799959998899978--89998987----665-403567678899999975422333200221000--144
Q ss_pred CCCCCCCCEEEEEC-----CCCCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 08999811899808-----966829999975-4989984999818
Q 027826 109 MDGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 109 L~~l~~~DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
.+ -++||+|+.-. ++.+...+++.+ +++++||++++.-
T Consensus 91 ~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 91 TF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp CC-CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-CCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 54-665459998203010888899999999999718794999999
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.48 E-value=8.7e-07 Score=55.60 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=72.2
Q ss_pred HHHHHHHH---CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC--EEEEECCCCC
Q ss_conf 99999985---6999399937575618999999986498996999997398208999999-9658994--3999837995
Q 027826 32 LVSAMAAG---WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADD 105 (218)
Q Consensus 32 fL~~L~~~---~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~--I~~i~GdA~~ 105 (218)
++..|... .+..+||||||++|. .+..||... +.+ |+.++.++.+...++. ....|+. ++++.+|+
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~--~~~~la~~~---~~~-v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~-- 126 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGG--AARFLVRKF---GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF-- 126 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHHH---CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT--
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHCCC---CCE-EEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCC--
T ss_conf 99999984399999989870999707--776532057---957-9999534024433210233333333222233333--
Q ss_pred HHHCCCCCCCCEEEEECC---CCCCHHHHHHH-CCCCCCEEEEEECCC
Q ss_conf 011089998118998089---66829999975-498998499981887
Q 027826 106 EELMDGLVDIDFLVVDSR---RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 106 ~e~L~~l~~~DfVFIDa~---K~~Y~~~~~~~-~L~~~GgiIv~DNvl 149 (218)
.++--.-.+||+|+.-.- -.+...++..+ +++++||.+++-+..
T Consensus 127 ~~l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 127 LEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp TSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCCCCCCCHHHCCCHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 333222233312211402551247889999999851899379999851
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.47 E-value=8.1e-07 Score=55.79 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCCC-CCCCEE
Q ss_conf 6999399937575618999999986498996999997398208999999965899439998379950110899-981189
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL-VDIDFL 118 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~l-~~~DfV 118 (218)
..-.+||++|+++|+ ++..||....+ +|+ |+.+|.++++...++...+.--.+..+.+|+...+..+.. +.+|++
T Consensus 72 ~pG~~VLDlGaGsG~--~t~~la~~VG~-~G~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i 147 (227)
T d1g8aa_ 72 KPGKSVLYLGIASGT--TASHVSDIVGW-EGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI 147 (227)
T ss_dssp CTTCEEEEETTTSTT--HHHHHHHHHCT-TSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEE
T ss_conf 999889991557789--99999998499-978-99994759999999999974688338997777742013444656799
Q ss_pred EEECCC-CCCHHHHHHH-CCCCCCEEEEE
Q ss_conf 980896-6829999975-49899849998
Q 027826 119 VVDSRR-KDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 119 FIDa~K-~~Y~~~~~~~-~L~~~GgiIv~ 145 (218)
|.|..- .+....++.+ +.+++||.++.
T Consensus 148 ~~d~~~~~~~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 148 FEDVAQPTQAKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99712441499999999986043874999
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.46 E-value=4e-07 Score=57.53 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=71.9
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH---HCCCC---EEEEECCCCCHHHCCC
Q ss_conf 85699939993757561899999998649899699999739820899999996---58994---3999837995011089
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG---EAGFS---PQVITGEADDEELMDG 111 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~---~agl~---I~~i~GdA~~~e~L~~ 111 (218)
...+|++||-+|.+.|. ++ ...+.......++.+|.+++...+++.+. ...+. ++++.+|| .+.+.+
T Consensus 77 ~~~~pk~VLiiGgG~G~--~~---r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da--~~~l~~ 149 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGG--VL---REVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG--VAFLKN 149 (290)
T ss_dssp TSSCCCEEEEETCSSSH--HH---HHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH--HHHHHT
T ss_pred HCCCCCCEEEECCCCHH--HH---HHHHHCCCCEEEEEECCCHHHHHHHHHHCHHHHCCCCCCCCEEEECCH--HHHHHH
T ss_conf 29997534774698369--99---999856663046872588999999998553321134699747998638--899752
Q ss_pred C-C-CCCEEEEECCCCCC-------HHHHHHH--CCCCCCEEEEEEC
Q ss_conf 9-9-81189980896682-------9999975--4989984999818
Q 027826 112 L-V-DIDFLVVDSRRKDF-------ARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 112 l-~-~~DfVFIDa~K~~Y-------~~~~~~~--~L~~~GgiIv~DN 147 (218)
. + .||.|++|+.-... .++|+.+ .|.+ ||+++.--
T Consensus 150 ~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q~ 195 (290)
T d1xj5a_ 150 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRP-GGVVCTQA 195 (290)
T ss_dssp SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEE-EEEEEEEC
T ss_pred CCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHCCC-CCEEEEEC
T ss_conf 23557508998277877754222799999999973489-95799946
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=8.1e-07 Score=55.79 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=64.5
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC--EEEEECCCCCHHHCCCCCCC
Q ss_conf 8569993999375756189999999864989969999973982089999999658994--39998379950110899981
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~ 115 (218)
...+.++||++|+++|. .++.+|++- ..+ |+.+|.++....+++.....++. |+++.|++ .++-.....|
T Consensus 32 ~~~~~~~VLDiGcG~G~--lsl~aa~~G---a~~-V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~--~~l~~~~~~~ 103 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGI--LSMFAAKAG---AKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI--EEVHLPVEKV 103 (311)
T ss_dssp GGTTTCEEEEETCTTSH--HHHHHHHTT---CSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT--TTSCCSCSCE
T ss_pred CCCCCCEEEEECCCCCH--HHHHHHHCC---CCE-EEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEH--HHHCCCCCCC
T ss_conf 45796999998788789--999999739---988-999939799999999999847776646997548--8823764441
Q ss_pred CEEEEEC-----CCCCCHHHHHH-H-CCCCCCEEEEE
Q ss_conf 1899808-----96682999997-5-49899849998
Q 027826 116 DFLVVDS-----RRKDFARVLRL-A-NLSSRGAVLVC 145 (218)
Q Consensus 116 DfVFIDa-----~K~~Y~~~~~~-~-~L~~~GgiIv~ 145 (218)
|.|+-+. ..+..++.+.. . +++++||.++-
T Consensus 104 D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 104 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEC
T ss_conf 1899750032213332117899999835899939954
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.45 E-value=4.1e-06 Score=51.82 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=65.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCCEEEEECCCCCHHHCCCCCCCCEEE
Q ss_conf 9993999375756189999999864989969999973982089999999-658994399983799501108999811899
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEELMDGLVDIDFLV 119 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~I~~i~GdA~~~e~L~~l~~~DfVF 119 (218)
.-.+||||||++|. .++.||. .+.+ ++.++.++++...++.. ...+..+.++.+|+ .++--.-.+||+|+
T Consensus 37 ~~~~ILDiGcG~G~--~~~~la~----~~~~-v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~--~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 37 KRGKVLDLACGVGG--FSFLLED----YGFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDA--RKLSFEDKTFDYVI 107 (226)
T ss_dssp SCCEEEEETCTTSH--HHHHHHH----TTCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCT--TSCCSCTTCEEEEE
T ss_pred CCCEEEEECCCCCH--HHHHHHH----HHCC-CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCCCEEEE
T ss_conf 99989997897404--4566765----4200-23455433310245553013323322224552--11124676750999
Q ss_pred EECCCCCC-----HHHHHHH-CCCCCCEEEEEE
Q ss_conf 80896682-----9999975-498998499981
Q 027826 120 VDSRRKDF-----ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 120 IDa~K~~Y-----~~~~~~~-~L~~~GgiIv~D 146 (218)
.=.--... ...++.+ +++++||.++++
T Consensus 108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCHHHCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 816043198668999999999875858589999
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.41 E-value=5.2e-07 Score=56.89 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=73.3
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHH-H-C-CCC---EEEEECCCCCHHH
Q ss_conf 99856999399937575618999999986498-99699999739820899999996-5-8-994---3999837995011
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHALG-E-A-GFS---PQVITGEADDEEL 108 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~-~~g~vi~t~e~~~~~~~~a~~~~-~-a-gl~---I~~i~GdA~~~e~ 108 (218)
++..-+||+||-+|.+.|. ++ ...+.. +..+ |+.+|.+++....++.+. . + ++. ++++.+|| .+.
T Consensus 101 l~~~~~pk~VLIiGgG~G~--~~---rellk~~~v~~-v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da--~~~ 172 (312)
T d2b2ca1 101 MFAHPDPKRVLIIGGGDGG--IL---REVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG--FEF 172 (312)
T ss_dssp HHHSSSCCEEEEESCTTSH--HH---HHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH--HHH
T ss_pred HHCCCCCCEEEEECCCCHH--HH---HHHHHCCCCCE-EEEECCCHHHHHHHHHHCHHHCCCCCCCCEEEEECHH--HHH
T ss_conf 7519987869994798469--99---99997399433-8997256899999876352211455799738997159--999
Q ss_pred CCCCC-CCCEEEEECCCCC-------CHHHHHHH--CCCCCCEEEEEEC
Q ss_conf 08999-8118998089668-------29999975--4989984999818
Q 027826 109 MDGLV-DIDFLVVDSRRKD-------FARVLRLA--NLSSRGAVLVCKN 147 (218)
Q Consensus 109 L~~l~-~~DfVFIDa~K~~-------Y~~~~~~~--~L~~~GgiIv~DN 147 (218)
+.+.+ .||.|++|..-.. -.++|+.+ .|.+ ||+++.--
T Consensus 173 l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~-~Gi~v~q~ 220 (312)
T d2b2ca1 173 LKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKE-DGILSSQG 220 (312)
T ss_dssp HHHCTTCEEEEEECCC-------------HHHHHHHHEEE-EEEEEEEC
T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEC
T ss_conf 9737887778999278888864566319999999862378-96799936
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.40 E-value=5e-07 Score=56.98 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=70.6
Q ss_pred HHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC---EEEEECC
Q ss_conf 8999999999-8569993999375756189999999864989969999973982089999999-658994---3999837
Q 027826 28 GVAELVSAMA-AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS---PQVITGE 102 (218)
Q Consensus 28 ~~g~fL~~L~-~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~---I~~i~Gd 102 (218)
+.=+++..++ ...+.++||.+.+++|. .++.+|. .+.+ |+.++.++.....++.+ ...|+. ++++++|
T Consensus 118 ~nr~~~~~~~~~~~~~~rVLdlf~~tG~--~sl~aa~----~GA~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D 190 (309)
T d2igta1 118 VHWEWLKNAVETADRPLKVLNLFGYTGV--ASLVAAA----AGAE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICED 190 (309)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEETCTTCH--HHHHHHH----TTCE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSC
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHHHH----CCCE-EEEEECHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 7899999987530689708880588767--7899986----8980-9999481999999998666523468848999477
Q ss_pred CCCHHHCCCC----CCCCEEEEECCC-------------CCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 9950110899----981189980896-------------6829999975-4989984999818
Q 027826 103 ADDEELMDGL----VDIDFLVVDSRR-------------KDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 103 A~~~e~L~~l----~~~DfVFIDa~K-------------~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
+ .+.|.+. ..||+|++|-.+ ..+...++.+ .|+.+||.+++-+
T Consensus 191 ~--~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 191 A--MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp H--HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred H--HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 7--775787764589988899789854556531367899999999999997467899789996
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=5.3e-07 Score=56.81 Aligned_cols=107 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCCCHHHCCCCCCC
Q ss_conf 8569993999375756189999999864989969999973982089999999-658994-39998379950110899981
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~~~e~L~~l~~~ 115 (218)
...+.++|||+|++.|. .+..|+ .+...+ ++.++.++++...|+.. ...+.. ++++++|+ .++...-++|
T Consensus 57 ~~~~~~~vLDiGcG~G~--~~~~l~---~~~~~~-v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~--~~~~~~~~~f 128 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGR--ITKRLL---LPLFRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL--QDFTPEPDSY 128 (222)
T ss_dssp -CCCCSEEEEETCTTTH--HHHHTT---TTTCSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG--GGCCCCSSCE
T ss_pred CCCCCCEEEEECCCCCH--HHHHHH---HHCCCE-EEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC
T ss_conf 78878779993467787--369999---853978-878406788841011232112222233322112--2222333323
Q ss_pred CEEEEECCCCCC-----HHHHHHH--CCCCCCEEEEEECCCCCC
Q ss_conf 189980896682-----9999975--498998499981887778
Q 027826 116 DFLVVDSRRKDF-----ARVLRLA--NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 116 DfVFIDa~K~~Y-----~~~~~~~--~L~~~GgiIv~DNvl~~G 152 (218)
|+|+.-..-... .++++.+ .|.|.|-+++.||+...+
T Consensus 129 D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~ 172 (222)
T d2ex4a1 129 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG 172 (222)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 32112333222103455547889987438761499987655566
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.38 E-value=1.4e-06 Score=54.37 Aligned_cols=102 Identities=15% Similarity=0.063 Sum_probs=67.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH-HCCCCEEEEECCCCCHHHCCCC-CCCCE
Q ss_conf 699939993757561899999998649899699999739820899999996-5899439998379950110899-98118
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFSPQVITGEADDEELMDGL-VDIDF 117 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~-~agl~I~~i~GdA~~~e~L~~l-~~~Df 117 (218)
....+||++|+++|+ ++..||...+ +|+ |+.++..+++...++... ..+ .+.++.+|++..+..+.. +.+|+
T Consensus 55 kpg~~VLDlGcG~G~--~~~~la~~v~--~g~-V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 55 RGDERVLYLGAASGT--TVSHLADIVD--EGI-IYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CSSCEEEEETCTTSH--HHHHHHHHTT--TSE-EEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 999999992785799--9999997416--776-9999087999999999744458-810899105674222355453789
Q ss_pred EEEECC-CCCCHHHHHHH-CCCCCCEEEE-EEC
Q ss_conf 998089-66829999975-4989984999-818
Q 027826 118 LVVDSR-RKDFARVLRLA-NLSSRGAVLV-CKN 147 (218)
Q Consensus 118 VFIDa~-K~~Y~~~~~~~-~L~~~GgiIv-~DN 147 (218)
+|.|-. ..+....+..+ +.+++||.++ ++.
T Consensus 129 v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 129 IYQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 996065736679999999987406976999998
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.38 E-value=4.7e-06 Score=51.43 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEEEC
Q ss_conf 8899999999985--69993999375756189999999864989969999973982089999999-658994--399983
Q 027826 27 SGVAELVSAMAAG--WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITG 101 (218)
Q Consensus 27 p~~g~fL~~L~~~--~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i~G 101 (218)
+..-+.+..+++. ....+|||+||++|. .++.|+.....++.+ ++-++.++.+...|+.. ...+.. ++++.+
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~--~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~ 99 (225)
T d1im8a_ 23 SNIITAIGMLAERFVTADSNVYDLGCSRGA--ATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCN 99 (225)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCTTCH--HHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCHHH--HHHHHHHHHCCCCCC-EEEECCCHHHHHHHHHHHHHHCCCCHHHHCCC
T ss_conf 999999999999866999879993341246--799998750478874-69737988999999987576402300110100
Q ss_pred CCCCHHHCCCCCCCCEEEEEC-----CCCCCHHHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf 799501108999811899808-----966829999975-498998499981887778
Q 027826 102 EADDEELMDGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 102 dA~~~e~L~~l~~~DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
|+ .+. ..+.+|++..-. +.++....|+.+ +.+++||+++........
T Consensus 100 d~--~~~--~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~ 152 (225)
T d1im8a_ 100 DI--RHV--EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 152 (225)
T ss_dssp CT--TTC--CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCS
T ss_pred HH--HCC--CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
T ss_conf 01--002--355430567742000267156788999999747898655524346654
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=1.9e-06 Score=53.75 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=73.6
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEEECCCCCHHHCC
Q ss_conf 99998569993999375756189999999864989969999973982089999999-658994--399983799501108
Q 027826 34 SAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELMD 110 (218)
Q Consensus 34 ~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i~GdA~~~e~L~ 110 (218)
++.-.....++||++|+++|+ .++.+|+. . .++ |+.+|.+++....++.+ ...++. |++++||+ .++++
T Consensus 100 ri~~~~~~g~~VlD~~aG~G~--~~l~~a~~--~-~~~-V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~--~~~~~ 171 (260)
T d2frna1 100 RMAKVAKPDELVVDMFAGIGH--LSLPIAVY--G-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN--RDFPG 171 (260)
T ss_dssp HHHHHCCTTCEEEETTCTTTT--THHHHHHH--T-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT--TTCCC
T ss_pred HHHHHCCCCCEEEECCCEECH--HHHHHHHH--C-CCE-EEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHCC
T ss_conf 997424785589977565959--99999972--8-968-9996498999999999999809875599998236--88445
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEEC
Q ss_conf 999811899808966829999975-4989984999818
Q 027826 111 GLVDIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKN 147 (218)
Q Consensus 111 ~l~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DN 147 (218)
. ..||.|+++-.. ...++++.+ .++++||+|.+..
T Consensus 172 ~-~~~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~ 207 (260)
T d2frna1 172 E-NIADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHN 207 (260)
T ss_dssp C-SCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCCEEEECCCC-CHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 7-878999988987-26888999986457997999993
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.36 E-value=3e-06 Score=52.55 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=63.7
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCC--EEEEECCCCCHHHCCCCC
Q ss_conf 98569993999375756189999999864989969999973982089999-999658994--399983799501108999
Q 027826 37 AAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEADDEELMDGLV 113 (218)
Q Consensus 37 ~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~--I~~i~GdA~~~e~L~~l~ 113 (218)
....+-++||++|+++|. .++.+|++ |++.|+.+|.++ ....+ +.....++. |+++.|+. .++--.-+
T Consensus 34 ~~~~~~~~VLDlGcGtG~--ls~~aa~~----Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~--~~l~~~~~ 104 (328)
T d1g6q1_ 34 KDLFKDKIVLDVGCGTGI--LSMFAAKH----GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL--EDVHLPFP 104 (328)
T ss_dssp HHHHTTCEEEEETCTTSH--HHHHHHHT----CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT--TTSCCSSS
T ss_pred CCCCCCCEEEEECCCCCH--HHHHHHHH----CCCEEEEEECCH-HHHHHHHHHHHHCCCCCCEEEEEEH--HHCCCCCC
T ss_conf 044793999996788789--99999972----899899995988-9999999999728665314788442--10447666
Q ss_pred CCCEEEEECC-----C-CCCHHHHHHH-CCCCCCEEEEEECC
Q ss_conf 8118998089-----6-6829999975-49899849998188
Q 027826 114 DIDFLVVDSR-----R-KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 114 ~~DfVFIDa~-----K-~~Y~~~~~~~-~L~~~GgiIv~DNv 148 (218)
.||+|+...- - ......+... +++++||+++-+-+
T Consensus 105 ~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~ 146 (328)
T d1g6q1_ 105 KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKC 146 (328)
T ss_dssp CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred CEEEEEEEECCEEECCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 213799872022302621579999998706699749995102
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=8.5e-06 Score=49.99 Aligned_cols=115 Identities=11% Similarity=0.056 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-----EEE
Q ss_conf 88889999999998569993999375756189999999864989969999973982089999999-658994-----399
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-----PQV 98 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-----I~~ 98 (218)
-.....++|..+.+..+.++|||+||++|. .++.||.. |-+ |+-++.++++...|+.. ...+.. ..+
T Consensus 40 r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~--~~~~la~~----g~~-v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~ 112 (292)
T d1xvaa_ 40 RTAEYKAWLLGLLRQHGCHRVLDVACGTGV--DSIMLVEE----GFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVI 112 (292)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSCTTSH--HHHHHHHT----TCE-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHC----CCE-EEECCCCHHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 679999999997655197999993278859--99999976----991-56123766799999999986444655322456
Q ss_pred EECCCCCHHH---CCCCCCCCEEEEECCC-----------CCCHHHHHHH-CCCCCCEEEEEECC
Q ss_conf 9837995011---0899981189980896-----------6829999975-49899849998188
Q 027826 99 ITGEADDEEL---MDGLVDIDFLVVDSRR-----------KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 99 i~GdA~~~e~---L~~l~~~DfVFIDa~K-----------~~Y~~~~~~~-~L~~~GgiIv~DNv 148 (218)
...+. ... ++.-++||.|+.-.+- .+....|+.+ +.+++||++|+|..
T Consensus 113 ~~~~~--~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 113 EEANW--LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp EECCG--GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCC--CCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 52020--0144446777771189995670623588444768999999999987685819999505
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.8e-07 Score=57.05 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=71.8
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCHHHHHHHHH---HCCCC---EEEEECCCCCHHH
Q ss_conf 99856999399937575618999999986498-99699999739820899999996---58994---3999837995011
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRH-TGGRHVCLVPDERSRSEYVHALG---EAGFS---PQVITGEADDEEL 108 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~-~~g~vi~t~e~~~~~~~~a~~~~---~agl~---I~~i~GdA~~~e~ 108 (218)
++...+||+||-+|.+.|. ++- ..+.. +..+ ++.+|.+++....++.+. ...+. ++++.+|| .+.
T Consensus 73 l~~~~~pk~vLiiGgG~G~--~~~---~~l~~~~~~~-v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da--~~~ 144 (285)
T d2o07a1 73 LCSHPNPRKVLIIGGGDGG--VLR---EVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG--FEF 144 (285)
T ss_dssp HTTSSSCCEEEEEECTTSH--HHH---HHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH--HHH
T ss_pred HHHCCCCCEEEEECCCCHH--HHH---HHHHCCCCCE-EEECCCCHHHHHHHHHHCHHHCCCCCCCCCEEEECCH--HHH
T ss_conf 6538676768986799649--999---9997599531-3650677899999976366541555798756998548--999
Q ss_pred CCCCC-CCCEEEEECCCCC------C-HHHHHHH--CCCCCCEEEEEE
Q ss_conf 08999-8118998089668------2-9999975--498998499981
Q 027826 109 MDGLV-DIDFLVVDSRRKD------F-ARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 109 L~~l~-~~DfVFIDa~K~~------Y-~~~~~~~--~L~~~GgiIv~D 146 (218)
|.+.+ .||.|++|+.-.. | .++|+.+ .|.+ ||++++-
T Consensus 145 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~-~Gi~v~q 191 (285)
T d2o07a1 145 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKE-DGVLCCQ 191 (285)
T ss_dssp HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEE-EEEEEEE
T ss_pred HHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-CCEEEEE
T ss_conf 7427877778999478988744011469999999985589-9759994
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=6.6e-07 Score=56.29 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCEEEEECCCCCHH
Q ss_conf 999999998-56999399937575618999999986498996999997398208999999-9658994399983799501
Q 027826 30 AELVSAMAA-GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 30 g~fL~~L~~-~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~I~~i~GdA~~~e 107 (218)
..+..+|.. .....+||++|+++|. .+ ++.+.+ +.+ ++.+|.+++....++. +...++..+++..++ ..
T Consensus 29 e~lf~~l~~~~~~g~~vLDl~~G~G~--~~--i~a~~~--ga~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~--d~ 99 (171)
T d1ws6a1 29 KALFDYLRLRYPRRGRFLDPFAGSGA--VG--LEAASE--GWE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPV--EV 99 (171)
T ss_dssp HHHHHHHHHHCTTCCEEEEETCSSCH--HH--HHHHHT--TCE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCH--HH
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCH--HH--HHHHHC--CCH-HHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEH--HC
T ss_conf 99999862015699869981253111--54--543312--101-21024687887656678876224321254201--02
Q ss_pred HCCCC----CCCCEEEEECC--CCCCHHHHHHH--CCCCCCEEEEEE
Q ss_conf 10899----98118998089--66829999975--498998499981
Q 027826 108 LMDGL----VDIDFLVVDSR--RKDFARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l----~~~DfVFIDa~--K~~Y~~~~~~~--~L~~~GgiIv~D 146 (218)
.++.. ++||+||+|-. ++.+..+.++. .+.++||++++-
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 33101245776330587365556889999999980984879699999
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.29 E-value=5.3e-06 Score=51.16 Aligned_cols=99 Identities=8% Similarity=-0.084 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC--EEEEECCCCCHHHCCCCC-CC
Q ss_conf 6999399937575618999999986498996999997398208999999-9658994--399983799501108999-81
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITGEADDEELMDGLV-DI 115 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~--I~~i~GdA~~~e~L~~l~-~~ 115 (218)
.+.++|||+||++|. .+.-++.. ..++++. ++.++++...|+. ....+.. +.++.+|+ .......+ +|
T Consensus 23 ~~~~~VLDlGCG~G~--~~~~~~~~---~~~~v~G-iD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~--~~~~~~~~~~f 94 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGG--DLLKYERA---GIGEYYG-VDIAEVSINDARVRARNMKRRFKVFFRAQDS--YGRHMDLGKEF 94 (252)
T ss_dssp CTTCEEEEETCTTTT--THHHHHHH---TCSEEEE-EESCHHHHHHHHHHHHTSCCSSEEEEEESCT--TTSCCCCSSCE
T ss_pred CCCCEEEEECCCCCH--HHHHHHHC---CCCEEEE-ECCCHHHHHHHHHHHHHCCCCCCEEEEECCH--HHHCCCCCCCC
T ss_conf 994989995163868--99999973---9984999-6199999999999988628886248897335--54222545564
Q ss_pred CEEEEECCCCCC-------HHHHHHH-CCCCCCEEEEEE
Q ss_conf 189980896682-------9999975-498998499981
Q 027826 116 DFLVVDSRRKDF-------ARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 116 DfVFIDa~K~~Y-------~~~~~~~-~L~~~GgiIv~D 146 (218)
|.|+.-..-+.+ ..+++.+ +++++||+++++
T Consensus 95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEECCEEEECCCCHHHHHHHHHHHHCEECCCCEEEEE
T ss_conf 289973303104787889988789874162899789998
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.25 E-value=3.6e-06 Score=52.08 Aligned_cols=103 Identities=15% Similarity=0.053 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCC
Q ss_conf 99999985699939993757561899999998649899699999739820899999996589943999837995011089
Q 027826 32 LVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG 111 (218)
Q Consensus 32 fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~ 111 (218)
.+..+.+..++++|||||+++|. .+..|+. .+.+ ++.++.+++....++.. ....++++.+++ .+....
T Consensus 11 ~~~~~~~~~~~~~VLDiGcG~G~--~~~~l~~----~g~~-v~giD~s~~~i~~a~~~--~~~~~~~~~~~~--~~~~~~ 79 (225)
T d2p7ia1 11 MVRAFTPFFRPGNLLELGSFKGD--FTSRLQE----HFND-ITCVEASEEAISHAQGR--LKDGITYIHSRF--EDAQLP 79 (225)
T ss_dssp HHHHHGGGCCSSCEEEESCTTSH--HHHHHTT----TCSC-EEEEESCHHHHHHHHHH--SCSCEEEEESCG--GGCCCS
T ss_pred HHHHHHHHCCCCCEEEEECCCCH--HHHHHHH----CCCE-EEEEECCHHHHHHHHCC--CCCCCCCCCCCC--CCCCCC
T ss_conf 99984400799969999079709--9999997----4991-99994857874332113--322223332222--222232
Q ss_pred CCCCCEEEEECCCC---CCHHHHHHH--CCCCCCEEEEEE
Q ss_conf 99811899808966---829999975--498998499981
Q 027826 112 LVDIDFLVVDSRRK---DFARVLRLA--NLSSRGAVLVCK 146 (218)
Q Consensus 112 l~~~DfVFIDa~K~---~Y~~~~~~~--~L~~~GgiIv~D 146 (218)
.+||+|+.-.--+ +-...+..+ +++++||.+++.
T Consensus 80 -~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 80 -RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp -SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -334312332126753899999999999731899569999
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.23 E-value=1.1e-05 Score=49.27 Aligned_cols=112 Identities=11% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCC--EEEEEC
Q ss_conf 8999999999856---999399937575618999999986498996999997398208999999-9658994--399983
Q 027826 28 GVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFS--PQVITG 101 (218)
Q Consensus 28 ~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~--I~~i~G 101 (218)
.+-+-+..+++.. ...+||||||+.|. .++.+|+.. +.+ |+.+..+++....++. ..+.|+. +++...
T Consensus 36 AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~--~a~~~a~~~---g~~-v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~ 109 (280)
T d2fk8a1 36 AQYAKVDLNLDKLDLKPGMTLLDIGCGWGT--TMRRAVERF---DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ 109 (280)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEEESCTTSH--HHHHHHHHH---CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEES
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHHHHHC---CEE-EEEECCHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 999999999997299999999994588629--899888727---515-99951137899999999876313220234431
Q ss_pred CCCCHHHCCCCCCCCEEEEEC-----CCCCCHHHHHHH-CCCCCCEEEEEECCCC
Q ss_conf 799501108999811899808-----966829999975-4989984999818877
Q 027826 102 EADDEELMDGLVDIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 102 dA~~~e~L~~l~~~DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~ 150 (218)
|. .+. + .+||.|+.-. ...+|..+|+.+ +++++||.+++.-+..
T Consensus 110 d~--~~~-~--~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 110 GW--EDF-A--EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp CG--GGC-C--CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HH--HHH-C--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC
T ss_conf 12--321-0--11014268557777654448899999874118996189998622
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.21 E-value=7.5e-06 Score=50.30 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=70.5
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCC--EEEEECCCCCHHHCCCCCCC
Q ss_conf 569993999375756189999999864989969999973982089999-999658994--39998379950110899981
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS--PQVITGEADDEELMDGLVDI 115 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~--I~~i~GdA~~~e~L~~l~~~ 115 (218)
..+.++||+||++.|. .+..++++.+ +.+ ++..+. ++....+ +.+...++. ++++.||. .+-+| .+|
T Consensus 79 ~~~~~~vlDvG~G~G~--~~~~l~~~~P--~~~-~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~--~~~~p--~~~ 148 (256)
T d1qzza2 79 WSAVRHVLDVGGGNGG--MLAAIALRAP--HLR-GTLVEL-AGPAERARRRFADAGLADRVTVAEGDF--FKPLP--VTA 148 (256)
T ss_dssp CTTCCEEEEETCTTSH--HHHHHHHHCT--TCE-EEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT--TSCCS--CCE
T ss_pred CCCCCEEEEECCCCCH--HHHHHHHHHC--CCE-EEEECC-HHHHHHHHHHHHHCCCCCEEEEEEEEC--CCCCC--CCC
T ss_conf 7668879997898978--9999998625--857-999348-288899999876417765046642001--23466--643
Q ss_pred CEEEEECCCCCC-----HHHHHHH--CCCCCCE-EEEEECCCCCC
Q ss_conf 189980896682-----9999975--4989984-99981887778
Q 027826 116 DFLVVDSRRKDF-----ARVLRLA--NLSSRGA-VLVCKNAYSRN 152 (218)
Q Consensus 116 DfVFIDa~K~~Y-----~~~~~~~--~L~~~Gg-iIv~DNvl~~G 152 (218)
|++++=.--+++ ...|+.+ .|+| || ++|.|.++...
T Consensus 149 D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkp-gG~llI~d~~~~~~ 192 (256)
T d1qzza2 149 DVVLLSFVLLNWSDEDALTILRGCVRALEP-GGRLLVLDRADVEG 192 (256)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE-EEEEEEEECCH---
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-CCEEEEEEECCCCC
T ss_conf 012114420125737777999999863588-66048987306798
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=1.5e-05 Score=48.60 Aligned_cols=113 Identities=8% Similarity=-0.077 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HH-----------
Q ss_conf 888889999999998569993999375756189999999864989969999973982089999999-65-----------
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GE----------- 91 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~----------- 91 (218)
...|.--+++..+.......+||++||+.|+ .++.||.. |-+ |+-++..+.....++.. ..
T Consensus 28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~--~a~~LA~~----G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~ 100 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGKAV--EMKWFADR----GHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIP 100 (229)
T ss_dssp TCCHHHHHHHHHHHTTCCSCEEEETTCTTCT--HHHHHHHT----TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTST
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHHC----CCC-EEEEECCHHHHHHHHHHHHCCCCCCCHHCCC
T ss_conf 8998999999986178989879995889838--89999838----981-8999588999999998711044311110035
Q ss_pred -------CCCCEEEEECCCCCHHHCCCCC-CCCEEEEEC-----CCCCCHHHHHHH-CCCCCCEEEEE
Q ss_conf -------8994399983799501108999-811899808-----966829999975-49899849998
Q 027826 92 -------AGFSPQVITGEADDEELMDGLV-DIDFLVVDS-----RRKDFARVLRLA-NLSSRGAVLVC 145 (218)
Q Consensus 92 -------agl~I~~i~GdA~~~e~L~~l~-~~DfVFIDa-----~K~~Y~~~~~~~-~L~~~GgiIv~ 145 (218)
.+..++++++|. .+..+... .||+|+--+ ..++...|++.+ +++++||.++.
T Consensus 101 ~~~~~~~~~~~v~~~~~d~--~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 101 GTKVFKSSSGNISLYCCSI--FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp TCEEEEETTSSEEEEESCG--GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCEEEECCCCEEEEECCH--HHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 2020340278379998532--31663214761589987788854612567899999864097626999
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.17 E-value=1e-05 Score=49.51 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCC--C-CCCC
Q ss_conf 699939993757561899999998649899699999739820899999996589943999837995011089--9-9811
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDG--L-VDID 116 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~--l-~~~D 116 (218)
..-.+||++|+++|+ ++..+|...+ +|+ |+.++.++.+...++......-.+..+.+++ ....+- . ..+|
T Consensus 73 kpG~~VLDlGcGsG~--~~~~la~~~~--~g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~--~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 73 KRDSKILYLGASAGT--TPSHVADIAD--KGI-VYAIEYAPRIMRELLDACAERENIIPILGDA--NKPQEYANIVEKVD 145 (230)
T ss_dssp CTTCEEEEESCCSSH--HHHHHHHHTT--TSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCT--TCGGGGTTTCCCEE
T ss_pred CCCCEEEEECEECCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCCCEEE
T ss_conf 999989990887488--9999997489--988-9999492899999999876415663599750--36765556532267
Q ss_pred EEEEECC-CCCCHHHHHHH-CCCCCCEEEE-EECCC
Q ss_conf 8998089-66829999975-4989984999-81887
Q 027826 117 FLVVDSR-RKDFARVLRLA-NLSSRGAVLV-CKNAY 149 (218)
Q Consensus 117 fVFIDa~-K~~Y~~~~~~~-~L~~~GgiIv-~DNvl 149 (218)
++|.|-. ..+...++..+ +.+++||.++ ++..-
T Consensus 146 ~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~ 181 (230)
T d1g8sa_ 146 VIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181 (230)
T ss_dssp EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 751232034899999999997530585699974046
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.16 E-value=2.6e-05 Score=47.27 Aligned_cols=115 Identities=12% Similarity=0.002 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEE
Q ss_conf 8889999999998---569993999375756189999999864989969999973982089999999-658994--3999
Q 027826 26 ESGVAELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVI 99 (218)
Q Consensus 26 ~p~~g~fL~~L~~---~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i 99 (218)
+..+-+.+..++. ...-.+||||||+.|- .++.+|... +.+ ++.+..+++....++.. ...|+. +++.
T Consensus 43 ~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~--~~~~~a~~~---g~~-v~git~s~~q~~~a~~~~~~~~l~~~v~~~ 116 (291)
T d1kpia_ 43 EEAQYAKRKLALDKLNLEPGMTLLDIGCGWGS--TMRHAVAEY---DVN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVR 116 (291)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSH--HHHHHHHHH---CCE-EEEEESCHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHHHHHC---CCC-EEECCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999986399999978874576258--999999864---753-031052088999999998751111134455
Q ss_pred ECCCCCHHHCCCCCCCCEEEEECCC------------CCCHHHHHHH-CCCCCCEEEEEECCCCC
Q ss_conf 8379950110899981189980896------------6829999975-49899849998188777
Q 027826 100 TGEADDEELMDGLVDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~~DfVFIDa~K------------~~Y~~~~~~~-~L~~~GgiIv~DNvl~~ 151 (218)
..|. .+. + .+||-|.--.-- .+|..+|+.+ +++++||.++..-+...
T Consensus 117 ~~d~--~~~-~--~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 117 IQGW--EEF-D--EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp ECCG--GGC-C--CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred HHCC--CCC-C--CCCCEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 4201--133-6--6514576201677601255556789999999999974799875578999605
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.13 E-value=3.1e-05 Score=46.80 Aligned_cols=106 Identities=8% Similarity=-0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8899999999985--69993999375756189999999864989969999973982089999999658994399983799
Q 027826 27 SGVAELVSAMAAG--WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 27 p~~g~fL~~L~~~--~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~ 104 (218)
+-...+...+... .++.+|||+|+++|+ .+..|+...+ +.+++ -++.++.+...++.. .-.++++.||+
T Consensus 68 ~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~--~~~~l~~~~~--~~~~~-giD~s~~~~~~a~~~---~~~~~~~~~d~- 138 (268)
T d1p91a_ 68 PLRDAIVAQLRERLDDKATAVLDIGCGEGY--YTHAFADALP--EITTF-GLDVSKVAIKAAAKR---YPQVTFCVASS- 138 (268)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEETCTTST--THHHHHHTCT--TSEEE-EEESCHHHHHHHHHH---CTTSEEEECCT-
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCH--HHHHHHHHCC--CCEEE-EECCHHHHHHHHHCC---CCCCCCEEEEH-
T ss_conf 999999999997558778879995798968--8899998789--97899-966167655554202---13532001101-
Q ss_pred CHHHCCC-CCCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEE
Q ss_conf 5011089-99811899808966829999975498998499981
Q 027826 105 DEELMDG-LVDIDFLVVDSRRKDFARVLRLANLSSRGAVLVCK 146 (218)
Q Consensus 105 ~~e~L~~-l~~~DfVFIDa~K~~Y~~~~~~~~L~~~GgiIv~D 146 (218)
.++ +- -.+||+|+.-.....+.+.. +++++||.+++-
T Consensus 139 -~~l-~~~~~sfD~v~~~~~~~~~~e~~---rvLkpgG~l~~~ 176 (268)
T d1p91a_ 139 -HRL-PFSDTSMDAIIRIYAPCKAEELA---RVVKPGGWVITA 176 (268)
T ss_dssp -TSC-SBCTTCEEEEEEESCCCCHHHHH---HHEEEEEEEEEE
T ss_pred -HHC-CCCCCCEEEEEECCCHHHHHHHH---HHHCCCCEEEEE
T ss_conf -213-57899888885268879999999---970888389999
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.13 E-value=1.1e-05 Score=49.35 Aligned_cols=103 Identities=14% Similarity=0.117 Sum_probs=64.7
Q ss_pred HHHHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 999999998--569993999375756189999999864989969999973982089999999658994399983799501
Q 027826 30 AELVSAMAA--GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEE 107 (218)
Q Consensus 30 g~fL~~L~~--~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e 107 (218)
-+++..++. ..++.+|||+||++|. .+..|+. .+.+ |+.++.++.+...++... ...++.+++ .+
T Consensus 29 ~~~~~~~~~~~~~~~~~vLDiGcG~G~--~~~~l~~----~~~~-v~giD~s~~~l~~a~~~~----~~~~~~~~~--~~ 95 (246)
T d2avna1 29 HRLIGSFLEEYLKNPCRVLDLGGGTGK--WSLFLQE----RGFE-VVLVDPSKEMLEVAREKG----VKNVVEAKA--ED 95 (246)
T ss_dssp HHHHHHHHHHHCCSCCEEEEETCTTCH--HHHHHHT----TTCE-EEEEESCHHHHHHHHHHT----CSCEEECCT--TS
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCH--HCCCCCC----CCEE-EEEEECCCCCCCCCCCCC----CCCCCCCCC--CC
T ss_conf 999999999856999989997999723--2000135----4228-999611344332322222----333222223--46
Q ss_pred HCCCC-CCCCEEEEECC----CCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 10899-98118998089----66829999975-498998499981
Q 027826 108 LMDGL-VDIDFLVVDSR----RKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 108 ~L~~l-~~~DfVFIDa~----K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
|+-- ++||+|+.=.+ -.+....++.+ +++++||+++++
T Consensus 96 -l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 96 -LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp -CCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -CCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf -64334665320454012656545999999987334848589999
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.11 E-value=1.4e-05 Score=48.79 Aligned_cols=113 Identities=12% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC-EEEEECCCCCHHH
Q ss_conf 999999998569993999375756189999999864989969999973982089999999658994-3999837995011
Q 027826 30 AELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEADDEEL 108 (218)
Q Consensus 30 g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~-I~~i~GdA~~~e~ 108 (218)
-+||..+ ...+.++|||+|++.|. .+..|+.-. ... |+.++..+++.+.|+.... +.. ++++++++ .+.
T Consensus 83 ~~fl~~l-~~~~~~~vLD~GcG~G~--~t~~ll~~~---~~~-v~~vD~s~~~l~~a~~~~~-~~~~~~~~~~d~--~~~ 152 (254)
T d1xtpa_ 83 RNFIASL-PGHGTSRALDCGAGIGR--ITKNLLTKL---YAT-TDLLEPVKHMLEEAKRELA-GMPVGKFILASM--ETA 152 (254)
T ss_dssp HHHHHTS-TTCCCSEEEEETCTTTH--HHHHTHHHH---CSE-EEEEESCHHHHHHHHHHTT-TSSEEEEEESCG--GGC
T ss_pred HHHHHHC-CCCCCCEEEEECCCCCH--HHHHHHHHC---CCE-EEEECCCHHHHHHHHCCCC-CCCCCEEEECCC--CCC
T ss_conf 9998528-77788769994664775--658888613---856-8998388999974221322-354301487343--233
Q ss_pred CCCCCCCCEEEEECCCCCC-----HHHHHHH--CCCCCCEEEEEECCCCCC
Q ss_conf 0899981189980896682-----9999975--498998499981887778
Q 027826 109 MDGLVDIDFLVVDSRRKDF-----ARVLRLA--NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 109 L~~l~~~DfVFIDa~K~~Y-----~~~~~~~--~L~~~GgiIv~DNvl~~G 152 (218)
-..-..||+|+.-.--.+. .++++.+ .|.+.|-+++.||+....
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~ 203 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 357774006886034333102465799999997648996899996677887
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.08 E-value=1.2e-05 Score=49.17 Aligned_cols=118 Identities=9% Similarity=-0.037 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH-HCC---------
Q ss_conf 8888899999999985699939993757561899999998649899699999739820899999996-589---------
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAG--------- 93 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~-~ag--------- 93 (218)
.+.|.--+++..| ......+||++||++|+ .++.||.. |.+ |+-++.++.+.+.++... ..+
T Consensus 4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~--~a~~la~~----G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~ 75 (201)
T d1pjza_ 4 EVNKDLQQYWSSL-NVVPGARVLVPLCGKSQ--DMSWLSGQ----GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFK 75 (201)
T ss_dssp SSTHHHHHHHHHH-CCCTTCEEEETTTCCSH--HHHHHHHH----CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEE
T ss_pred HHHHHHHHHHHHC-CCCCCCEEEEECCCCCH--HHHHHHHC----CCC-EEEECCCHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 4778999999974-99999979996686878--89999976----995-5841564999999999711342011110011
Q ss_pred ----CCEEEEECCCCCHHHCCCCC-CCCEEEEECCCC-----CCHHHHHHH-CCCCCCEEEEE-ECCCCC
Q ss_conf ----94399983799501108999-811899808966-----829999975-49899849998-188777
Q 027826 94 ----FSPQVITGEADDEELMDGLV-DIDFLVVDSRRK-----DFARVLRLA-NLSSRGAVLVC-KNAYSR 151 (218)
Q Consensus 94 ----l~I~~i~GdA~~~e~L~~l~-~~DfVFIDa~K~-----~Y~~~~~~~-~L~~~GgiIv~-DNvl~~ 151 (218)
..++++.||+ .+.-+... .||.|+--..-. ++..+++.+ +.+++||.++. ....++
T Consensus 76 ~~~~~~~~~~~~d~--~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 76 VYAAPGIEIWCGDF--FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp EEECSSSEEEEECC--SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred HCCCCCCCEECCCC--CCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 01211232001430--011234556613899976567346155677999999754978289999853466
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=3.2e-05 Score=46.75 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEEC
Q ss_conf 88899999999985--69993999375756189999999864989969999973982089999999-658994-399983
Q 027826 26 ESGVAELVSAMAAG--WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITG 101 (218)
Q Consensus 26 ~p~~g~fL~~L~~~--~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~G 101 (218)
.|++..+....... .++.+||++||++|++ ++.+|...+ +.+ ++..+.++.....|+.+ .+.++. |+|+.|
T Consensus 91 RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I--~i~la~~~p--~~~-v~avDis~~Al~~A~~Na~~~~~~~v~~~~~ 165 (274)
T d2b3ta1 91 RPDTECLVEQALARLPEQPCRILDLGTGTGAI--ALALASERP--DCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQS 165 (274)
T ss_dssp CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHH--HHHHHHHCT--TSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECC
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHH--HHHHHHHCC--CCE-EEECCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 31003555467654111344102332024677--888875088--533-6312310377769999999847656356634
Q ss_pred CCCCHHHCCCCCCCCEEEEE
Q ss_conf 79950110899981189980
Q 027826 102 EADDEELMDGLVDIDFLVVD 121 (218)
Q Consensus 102 dA~~~e~L~~l~~~DfVFID 121 (218)
|. .+.++. ..||+|.-.
T Consensus 166 d~--~~~~~~-~~fDlIvsN 182 (274)
T d2b3ta1 166 DW--FSALAG-QQFAMIVSN 182 (274)
T ss_dssp ST--TGGGTT-CCEEEEEEC
T ss_pred CC--CCCCCC-CCEEEEEEC
T ss_conf 65--434689-852489961
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=1.7e-05 Score=48.28 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHH---HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEE
Q ss_conf 888999999999---8569993999375756189999999864989969999973982089999999-658994--3999
Q 027826 26 ESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVI 99 (218)
Q Consensus 26 ~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i 99 (218)
+..+-+.+..++ ......+||+||++.|- .++.+|..- |.+ ++.+...++....++.. .++|+. +++.
T Consensus 44 ~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~--~a~~~a~~~---g~~-v~git~s~~Q~~~a~~~~~~~g~~~~v~~~ 117 (285)
T d1kpga_ 44 QEAQIAKIDLALGKLGLQPGMTLLDVGCGWGA--TMMRAVEKY---DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVL 117 (285)
T ss_dssp HHHHHHHHHHHHTTTTCCTTCEEEEETCTTSH--HHHHHHHHH---CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHHHHCC---CCC-EEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999987189999889993574018--889887528---961-488714377899999998764111126888
Q ss_pred ECCCCCHHHCCCCCCCCEEE-EECC----CCCCHHHHHHH-CCCCCCEEEEEECCC
Q ss_conf 83799501108999811899-8089----66829999975-498998499981887
Q 027826 100 TGEADDEELMDGLVDIDFLV-VDSR----RKDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~~DfVF-IDa~----K~~Y~~~~~~~-~L~~~GgiIv~DNvl 149 (218)
.+|. .+. + .+||-|. |-+- ..+|..+|+.+ +++++||.++...+.
T Consensus 118 ~~d~--~~~-~--~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 118 LAGW--EQF-D--EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ESCG--GGC-C--CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHHH--HCC-C--CCCCCEEEEHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 7643--213-3--4444111304346507146789999998524899719999996
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.96 E-value=5.6e-05 Score=45.34 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCC---EEEEE
Q ss_conf 88889999999998569993999375756189999999864989969999973982089999-999658994---39998
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEAGFS---PQVIT 100 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~---I~~i~ 100 (218)
.+..-.++..+|-....-.++|++-+++|. +|+-...+ |...++.+|.+......- +++...+.. ..++.
T Consensus 27 ~~~vrealFn~l~~~~~~~~vLDlFaGsG~----~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~ 100 (183)
T d2ifta1 27 GDRVKETLFNWLMPYIHQSECLDGFAGSGS----LGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN 100 (183)
T ss_dssp -CHHHHHHHHHHHHHHTTCEEEETTCTTCH----HHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCC----EEEEEEEE--CCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 289999999776654040458513667631----13333550--540467752131112457667765033321000002
Q ss_pred CCCCCHHHCCCCC---CCCEEEEECC--CCCCHHHHHHH---CCCCCCEEEEEEC
Q ss_conf 3799501108999---8118998089--66829999975---4989984999818
Q 027826 101 GEADDEELMDGLV---DIDFLVVDSR--RKDFARVLRLA---NLSSRGAVLVCKN 147 (218)
Q Consensus 101 GdA~~~e~L~~l~---~~DfVFIDa~--K~~Y~~~~~~~---~L~~~GgiIv~DN 147 (218)
.|+ .+.+.... +||+||+|-. ...|.+.++.+ .+..++|+|++-.
T Consensus 101 ~d~--~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 101 QSS--LDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp SCH--HHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCC--CCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 321--11001234477663788640675335999999888708818895999996
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.87 E-value=5.1e-05 Score=45.59 Aligned_cols=113 Identities=16% Similarity=0.140 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCCEEEE
Q ss_conf 88888999999999856---9993999375756189999999864989969999973982089999999-6589943999
Q 027826 24 SHESGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVI 99 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~I~~i 99 (218)
.-++..+..+..++... .-++||++|+++|. -++.++. .. ..+ ++.+|.+++....++.+ ...+...+++
T Consensus 26 ~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~--l~i~a~~--~g-~~~-v~~vdi~~~~~~~a~~N~~~~~~~~~~~ 99 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGV--LSYGALL--LG-AKE-VICVEVDKEAVDVLIENLGEFKGKFKVF 99 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCH--HHHHHHH--TT-CSE-EEEEESCHHHHHHHHHHTGGGTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH--HHHHHHH--CC-CCE-EEEECCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999999999999996599899999987676369--9999997--49-987-9997076999999999999759985599
Q ss_pred ECCCCCHHHCCCCCCCCEEEEECCC-----CCCHHHHHHH-CCCCCCEEEEEECCC
Q ss_conf 8379950110899981189980896-----6829999975-498998499981887
Q 027826 100 TGEADDEELMDGLVDIDFLVVDSRR-----KDFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 100 ~GdA~~~e~L~~l~~~DfVFIDa~K-----~~Y~~~~~~~-~L~~~GgiIv~DNvl 149 (218)
.+|+ .+. -..||+||.|-.- ....++++.. .+. +.+....+..
T Consensus 100 ~~d~--~~~---~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~--~~v~~ih~~~ 148 (201)
T d1wy7a1 100 IGDV--SEF---NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIHLAK 148 (201)
T ss_dssp ESCG--GGC---CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEEECC
T ss_pred ECCH--HHH---CCCCCEEEECCCCCCCCCCCCHHHHHHHHHHC--CCCHHCCCCH
T ss_conf 7753--550---77675898767643112212179999987323--2301100111
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=0.00022 Score=42.03 Aligned_cols=102 Identities=10% Similarity=0.150 Sum_probs=75.8
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCCCHHHCCCCC
Q ss_conf 998569993999375756189999999864989969999973982089999999-658994-399983799501108999
Q 027826 36 MAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDGLV 113 (218)
Q Consensus 36 L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~~~e~L~~l~ 113 (218)
++....+++++.+||+.|. -++-+|-+.+ +.+ ++-+|....+...-+.. .+-|+. ++++++.+ .+..+ -.
T Consensus 60 ~~~~~~~~~ilDiGsGaG~--PGi~laI~~p--~~~-~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~--E~~~~-~~ 131 (207)
T d1jsxa_ 60 VAPYLQGERFIDVGTGPGL--PGIPLSIVRP--EAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV--EEFPS-EP 131 (207)
T ss_dssp HGGGCCSSEEEEETCTTTT--THHHHHHHCT--TSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT--TTSCC-CS
T ss_pred HHHHHCCCCEEEEECCCCC--EEEEHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHCCCCCEEEECCCH--HHHCC-CC
T ss_conf 6654448830543046882--6531445136--526-999824058999999999873984001101304--44055-53
Q ss_pred CCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 811899808966829999975-498998499981
Q 027826 114 DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 114 ~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
+||+|.-=|- ......++++ .+.+++|.+++-
T Consensus 132 ~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 132 PFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCCEEHHHHH-CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 3000012131-37999999999844899599997
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00024 Score=41.81 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-H-------HCCCC---
Q ss_conf 999999998---569993999375756189999999864989969999973982089999999-6-------58994---
Q 027826 30 AELVSAMAA---GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-G-------EAGFS--- 95 (218)
Q Consensus 30 g~fL~~L~~---~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~-------~agl~--- 95 (218)
-.++..+++ ...-..||++||+.|. .++.+|...+ ..+++ -+|..++....++.. . ..|+.
T Consensus 137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~--~~~~~a~~~~--~~~~~-Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQ--VVLQVAAATN--CKHHY-GVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEETCTTSH--HHHHHHHHCC--CSEEE-EEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCH--HHHHHHHHHC--CCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999997289999989983788889--9999999727--88399-99478899999999999999876650566774
Q ss_pred EEEEECCCCCHHH--CCCCCCCCEEEEECCCCCCHH---HHHHH-CCCCCCEEEEEECCCC
Q ss_conf 3999837995011--089998118998089668299---99975-4989984999818877
Q 027826 96 PQVITGEADDEEL--MDGLVDIDFLVVDSRRKDFAR---VLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 96 I~~i~GdA~~~e~--L~~l~~~DfVFIDa~K~~Y~~---~~~~~-~L~~~GgiIv~DNvl~ 150 (218)
|++++||+ .+. -..+...|+||+-.- ..-++ .+..+ +.+++||.||+--.+.
T Consensus 212 i~~~~gd~--~~~~~~~~~~~advi~~~~~-~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~ 269 (328)
T d1nw3a_ 212 YTLERGDF--LSEEWRERIANTSVIFVNNF-AFGPEVDHQLKERFANMKEGGRIVSSKPFA 269 (328)
T ss_dssp EEEEECCT--TSHHHHHHHHHCSEEEECCT-TTCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred EEEEECCC--CCCCCCCCCCCCEEEEECCE-ECCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 48997764--55643113575169998662-056578899999998479983899936557
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.63 E-value=0.0016 Score=37.18 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHH---HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEE
Q ss_conf 888999999999---8569993999375756189999999864989969999973982089999999-658994--3999
Q 027826 26 ESGVAELVSAMA---AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVI 99 (218)
Q Consensus 26 ~p~~g~fL~~L~---~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i 99 (218)
.|++..++.... ...+.++++++||++|.++++ ++.. ++.+++. .+.+++....++.+ .+.++. +.++
T Consensus 92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~--la~~---~~~~v~a-~Dis~~Al~~A~~Na~~~~~~~~~~i~ 165 (271)
T d1nv8a_ 92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVS--VAKF---SDAIVFA-TDVSSKAVEIARKNAERHGVSDRFFVR 165 (271)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHH--HHHH---SSCEEEE-EESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHHH--HHHC---CCCEEEE-CHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 255456655433320156663799755410134331--1101---3100232-011246899979999970887405776
Q ss_pred ECCCCCHHHCCCC-CCCCEEEEE
Q ss_conf 8379950110899-981189980
Q 027826 100 TGEADDEELMDGL-VDIDFLVVD 121 (218)
Q Consensus 100 ~GdA~~~e~L~~l-~~~DfVFID 121 (218)
.++. .+.++.. ..||+|.-.
T Consensus 166 ~~~~--~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 166 KGEF--LEPFKEKFASIEMILSN 186 (271)
T ss_dssp ESST--TGGGGGGTTTCCEEEEC
T ss_pred ECCC--CCCCCCCCCCCCEEEEC
T ss_conf 2233--45532346762389972
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.38 E-value=0.00083 Score=38.71 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EEEEECCCCCHHHCCC--C-CC
Q ss_conf 69993999375756189999999864989969999973982089999999-658994-3999837995011089--9-98
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQVITGEADDEELMDG--L-VD 114 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~~i~GdA~~~e~L~~--l-~~ 114 (218)
..+++++.|||+.|. -+|-||-+.+ +-+ ++.+|....+...-+.. .+-|+. ++++++.+ .+.-.. . +.
T Consensus 69 ~~~~~ilDiGSGaGf--PGi~laI~~p--~~~-v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~--E~~~~~~~~~~~ 141 (239)
T d1xdza_ 69 NQVNTICDVGAGAGF--PSLPIKICFP--HLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRA--ETFGQRKDVRES 141 (239)
T ss_dssp GGCCEEEEECSSSCT--THHHHHHHCT--TCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH--HHHTTCTTTTTC
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHCC--CCC-CEEECCHHHHHHHHHHHHHHHCCCCCEEEEEHH--HHCCCCCCCCCC
T ss_conf 688769742488736--8999999578--765-364214588899999999983888717883035--541431012566
Q ss_pred CCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECCCCCCC---CCHH-----HHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 11899808966829999975-4989984999818877784---2026-----56431367889838999455893
Q 027826 115 IDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNAYSRND---STFR-----WKNVLDGRSRRLVRSVYLPVGKG 180 (218)
Q Consensus 115 ~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G~---~~~~-----~~~~~~~~~~~~~~t~llPigDG 180 (218)
||+|.-=|- ......++++ .+.++||.+++ +.|. .+.. +...-..- ..+....+|..++
T Consensus 142 ~D~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~----~KG~~~~~El~~a~~~~~~~~~~~--~~v~~~~lp~~~~ 209 (239)
T d1xdza_ 142 YDIVTARAV-ARLSVLSELCLPLVKKNGLFVA----LKAASAEEELNAGKKAITTLGGEL--ENIHSFKLPIEES 209 (239)
T ss_dssp EEEEEEECC-SCHHHHHHHHGGGEEEEEEEEE----EECC-CHHHHHHHHHHHHHTTEEE--EEEEEEECTTTCC
T ss_pred CEEEEEHHH-HCHHHHHHHHHHHCCCCCEEEE----ECCCCHHHHHHHHHHHHHHCCCEE--EEEEEEECCCCCC
T ss_conf 418987255-0778999987651066989999----779985999998998999739879--9999985798889
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0022 Score=36.32 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHHCCC----------CCCC--HHHHHHHHHHHHH--------CCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 21591356999999653028----------7888--8899999999985--------69993999375756189999999
Q 027826 3 LVWSPETASKAYIDTVKSCE----------LSHE--SGVAELVSAMAAG--------WDARLIVETWSHGGATATSVGLA 62 (218)
Q Consensus 3 ~~~~~~~a~~ay~~~l~~~~----------~~i~--p~~g~fL~~L~~~--------~~ak~ILEiGt~~GyiGtaigLA 62 (218)
+-|....|.+++-.++.... ..++ |....++..+... ....++|++||++|.| ++.||
T Consensus 3 idf~~~~a~~~l~~~ll~~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I--~~~l~ 80 (250)
T d2h00a1 3 LNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCI--YPLLG 80 (250)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTH--HHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH--HHHHH
T ss_conf 3259869999999999999859448968981619999779999999998640346866654678857781099--99999
Q ss_pred HHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC--EEEEECCCCCHHHC-CCC----C-CCCEEEEECCCCCCH
Q ss_conf 864989969999973982089999999-658994--39998379950110-899----9-811899808966829
Q 027826 63 VASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS--PQVITGEADDEELM-DGL----V-DIDFLVVDSRRKDFA 128 (218)
Q Consensus 63 ~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~--I~~i~GdA~~~e~L-~~l----~-~~DfVFIDa~K~~Y~ 128 (218)
...+ +-+++.+ +.+++....|+.+ ...+++ +.++..+. ...+ +.+ + .||||+ +++.-|.
T Consensus 81 ~~~~--~~~~~~~-Di~~~al~~A~~N~~~n~l~~~~~~~~~~~--~~~~~~~~~~~~~~~fD~iv--sNPPY~~ 148 (250)
T d2h00a1 81 ATLN--GWYFLAT-EVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ--KTLLMDALKEESEIIYDFCM--CNPPFFA 148 (250)
T ss_dssp HHHH--CCEEEEE-ESCHHHHHHHHHHHHHTTCTTTEEEEECCT--TCSSTTTSTTCCSCCBSEEE--ECCCCC-
T ss_pred HHCC--CCCCCCE-ECCHHHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHHHHCCCCCEEEEE--ECCCCCC
T ss_conf 9688--7642112-258999999999999828875413334010--77664544312567542899--3675445
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.0033 Score=35.29 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=77.7
Q ss_pred CCCHHHHHHHHHHHH----HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-EE
Q ss_conf 888889999999998----569993999375756189999999864989969999973982089999999-658994-39
Q 027826 24 SHESGVAELVSAMAA----GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS-PQ 97 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~----~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~-I~ 97 (218)
++.+...+.|...+. ..+..+|||.-+++|. -++.||. ...+ |+.+|.+++....|+.+ ...|+. ++
T Consensus 191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~--fsl~La~----~~~~-V~gvE~~~~ai~~A~~na~~n~i~n~~ 263 (358)
T d1uwva2 191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGN--FTLPLAT----QAAS-VVGVEGVPALVEKGQQNARLNGLQNVT 263 (358)
T ss_dssp CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTT--THHHHHT----TSSE-EEEEESCHHHHHHHHHHHHHTTCCSEE
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCHHCCC----CCCE-EEECCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 03303446779889875246788449995366665--5210035----6527-982247499999999848755324621
Q ss_pred EEECCCCCHHHCCCC----CCCCEEEEECCCCCCHHHHHHH-CCCCCCEEE
Q ss_conf 998379950110899----9811899808966829999975-498998499
Q 027826 98 VITGEADDEELMDGL----VDIDFLVVDSRRKDFARVLRLA-NLSSRGAVL 143 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l----~~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiI 143 (218)
++.|++ .+.++.. ..+|.|++|=...--.+..+.+ ++.+ .-||
T Consensus 264 ~~~~~~--~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~l~~~~~-~~iv 311 (358)
T d1uwva2 264 FYHENL--EEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEP-IRIV 311 (358)
T ss_dssp EEECCT--TSCCSSSGGGTTCCSEEEECCCTTCCHHHHHHHHHHCC-SEEE
T ss_pred EEECCH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC-CEEE
T ss_conf 342204--54323445540467559967997347999999997499-9899
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.33 E-value=0.00056 Score=39.67 Aligned_cols=86 Identities=9% Similarity=0.076 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 88888999999999856---999399937575618999999986498996999997398208999999965899439998
Q 027826 24 SHESGVAELVSAMAAGW---DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVIT 100 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~---~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~ 100 (218)
.-+++.++.+-..+... .-++||++||++|. -+++++. .. ..+ |+.+|.+++....++.+.. .++++.
T Consensus 28 ~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~--l~i~a~~--~g-a~~-V~~vDid~~a~~~ar~N~~---~~~~~~ 98 (197)
T d1ne2a_ 28 PTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGI--LACGSYL--LG-AES-VTAFDIDPDAIETAKRNCG---GVNFMV 98 (197)
T ss_dssp CCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCH--HHHHHHH--TT-BSE-EEEEESCHHHHHHHHHHCT---TSEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHH--CC-CCC-CCCCCCCHHHHHHHHHCCC---CCCEEE
T ss_conf 9998999999999987599897999990798719--9999997--58-873-2301469999999997354---015799
Q ss_pred CCCCCHHHCCCCCCCCEEEEECC
Q ss_conf 37995011089998118998089
Q 027826 101 GEADDEELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 101 GdA~~~e~L~~l~~~DfVFIDa~ 123 (218)
+|. .++ + ..||.|+.|-.
T Consensus 99 ~D~--~~l-~--~~fD~Vi~NPP 116 (197)
T d1ne2a_ 99 ADV--SEI-S--GKYDTWIMNPP 116 (197)
T ss_dssp CCG--GGC-C--CCEEEEEECCC
T ss_pred EEH--HHC-C--CCCEEEEECCC
T ss_conf 762--203-7--74008872766
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=97.31 E-value=0.00042 Score=40.39 Aligned_cols=99 Identities=20% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCCC
Q ss_conf 99999856999399937575618999999986498996999997398208999999965899439998379950110899
Q 027826 33 VSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGL 112 (218)
Q Consensus 33 L~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~l 112 (218)
+..+.......+|||||+++|. . +..+. +++.+ +.++.+...++. + .++++.+|+ .++-..-
T Consensus 28 ~~~~~~~~~~~~vLDiGcG~G~--~----~~~~~----~~~gi-D~s~~~~~~a~~--~---~~~~~~~d~--~~l~~~~ 89 (208)
T d1vlma_ 28 LQAVKCLLPEGRGVEIGVGTGR--F----AVPLK----IKIGV-EPSERMAEIARK--R---GVFVLKGTA--ENLPLKD 89 (208)
T ss_dssp HHHHHHHCCSSCEEEETCTTST--T----HHHHT----CCEEE-ESCHHHHHHHHH--T---TCEEEECBT--TBCCSCT
T ss_pred HHHHHHHCCCCEEEEECCCCCC--C----CCCCC----EEEEE-ECCHHHCCCCCC--C---CCCCCCCCC--CCCCCCC
T ss_conf 9999841899869998999732--0----35621----07999-678001433312--2---222222222--2222222
Q ss_pred CCCCEEEEECCCC---CCHHHHHHH-CCCCCCEEEEEECCC
Q ss_conf 9811899808966---829999975-498998499981887
Q 027826 113 VDIDFLVVDSRRK---DFARVLRLA-NLSSRGAVLVCKNAY 149 (218)
Q Consensus 113 ~~~DfVFIDa~K~---~Y~~~~~~~-~L~~~GgiIv~DNvl 149 (218)
++||+|+.=..-+ +-..+++.+ +.+++||.+++....
T Consensus 90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~ 130 (208)
T d1vlma_ 90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 130 (208)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 33333321222222222221003455237889549999368
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00093 Score=38.42 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH-HHHHHHCCCC-EEEEECC
Q ss_conf 8888999999999856999399937575618999999986498996999997398208999-9999658994-3999837
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS-PQVITGE 102 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~-a~~~~~agl~-I~~i~Gd 102 (218)
+......+...++....-.+||++..+-|. -++.||..+.+ .+++++. +.++.+... .+++.+.|+. +++...|
T Consensus 78 ~QD~sS~l~~~~L~~~~g~~vLD~cAapGg--Kt~~la~l~~~-~~~i~a~-d~~~~R~~~l~~~l~r~g~~~~~~~~~d 153 (293)
T d2b9ea1 78 LQDRASCLPAMLLDPPPGSHVIDACAAPGN--KTSHLAALLKN-QGKIFAF-DLDAKRLASMATLLARAGVSCCELAEED 153 (293)
T ss_dssp ECCTGGGHHHHHHCCCTTCEEEESSCTTCH--HHHHHHHHHTT-CSEEEEE-ESCHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred ECCCCCCCCCCCCCCCCCCEEEECCCCHHH--HHHHHHHHHCC-CCEEEEE-CCCHHHHHHHHHHHHHCCCCCEEEEEHH
T ss_conf 837765433223689864457761656416--89999998458-8167620-4898899999877775186413656011
Q ss_pred CCCHHHCCCC---CCCCEEEEECC
Q ss_conf 9950110899---98118998089
Q 027826 103 ADDEELMDGL---VDIDFLVVDSR 123 (218)
Q Consensus 103 A~~~e~L~~l---~~~DfVFIDa~ 123 (218)
+ ...-+.. ..||.||+|+.
T Consensus 154 ~--~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 154 F--LAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp G--GGSCTTCGGGTTEEEEEECCC
T ss_pred H--HHHCCCCCCCCEEEEEEECCC
T ss_conf 5--551302332312118962586
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.0038 Score=35.00 Aligned_cols=107 Identities=10% Similarity=0.041 Sum_probs=63.2
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH-H-------CCCC---EEE-EECCCCC
Q ss_conf 85699939993757561899999998649899699999739820899999996-5-------8994---399-9837995
Q 027826 38 AGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-E-------AGFS---PQV-ITGEADD 105 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~-~-------agl~---I~~-i~GdA~~ 105 (218)
....-.++|++||+.|- .++.+|...+ ..+ ++-+|..+.+...|+... + .+.. +.+ ..++.
T Consensus 213 ~Lkpgd~fLDLGCG~G~--~vl~aA~~~g--~~~-v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f-- 285 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGN--CVVQAALECG--CAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF-- 285 (406)
T ss_dssp TCCTTCEEEEESCTTSH--HHHHHHHHHC--CSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS--
T ss_pred CCCCCCEEEECCCCCCH--HHHHHHHHCC--CCE-EEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECH--
T ss_conf 89999989967898759--9999999769--976-9998489999999999999875555553035665203344042--
Q ss_pred HH--HCC-CCCCCCEEEEECC--CCCCHHHHHHH-CCCCCCEEEEEECCCCC
Q ss_conf 01--108-9998118998089--66829999975-49899849998188777
Q 027826 106 EE--LMD-GLVDIDFLVVDSR--RKDFARVLRLA-NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 106 ~e--~L~-~l~~~DfVFIDa~--K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~ 151 (218)
.+ ... .+...|.+|+..- -.+....+..+ +.+++||.||.-..+..
T Consensus 286 ~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~~ 337 (406)
T d1u2za_ 286 VDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS 337 (406)
T ss_dssp TTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred HHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 2165422454564399973316736799999999972699828999114678
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.07 E-value=0.0016 Score=37.13 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=73.0
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCC---------------C-EE
Q ss_conf 99985699939993757561899999998649899699999739820899999-9965899---------------4-39
Q 027826 35 AMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGF---------------S-PQ 97 (218)
Q Consensus 35 ~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl---------------~-I~ 97 (218)
.+++..++++|||..+++|. =+|-.|.... ... |+..+.+++.....+ ++...++ . ++
T Consensus 39 l~~~~~~~~~vLD~~sasG~--rsiRya~E~~--~~~-V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~ 113 (375)
T d2dula1 39 VLLNILNPKIVLDALSATGI--RGIRFALETP--AEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIV 113 (375)
T ss_dssp HHHHHHCCSEEEESSCTTSH--HHHHHHHHSS--CSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEE
T ss_pred HHHHHHCCCEEEECCCCCCH--HHHHHHHHCC--CCE-EEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 99997399879986877409--9999998589--978-998259989999999999863754322112433235543367
Q ss_pred EEECCCCCHHHCCCCC-CCCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECC
Q ss_conf 9983799501108999-811899808966829999975-49899849998188
Q 027826 98 VITGEADDEELMDGLV-DIDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 98 ~i~GdA~~~e~L~~l~-~~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNv 148 (218)
+...|| ...+.... .||+|.||-- +.-.+|++.+ +..+.||++.+--+
T Consensus 114 ~~~~Da--~~~~~~~~~~fDvIDiDPf-Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 114 INHDDA--NRLMAERHRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp EEESCH--HHHHHHSTTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEHHHH--HHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 410045--5656751576774457888-8817999999997044877999936
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.00089 Score=38.54 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=56.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCC----CCCCEEEEEECCCCCHHHHHHH-HH-HCCCC-EEE--EECCCCCHHHC----
Q ss_conf 939993757561899999998649----8996999997398208999999-96-58994-399--98379950110----
Q 027826 43 RLIVETWSHGGATATSVGLAVASR----HTGGRHVCLVPDERSRSEYVHA-LG-EAGFS-PQV--ITGEADDEELM---- 109 (218)
Q Consensus 43 k~ILEiGt~~GyiGtaigLA~a~~----~~~g~vi~t~e~~~~~~~~a~~-~~-~agl~-I~~--i~GdA~~~e~L---- 109 (218)
-+||||||++|. .+..|+..+. ..+.. ++.++.++.+...++. +. ...+. +.+ ...++ .+..
T Consensus 42 ~~VLDiGcG~G~--~~~~ll~~l~~~~~~~~~~-~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 116 (280)
T d1jqea_ 42 IKILSIGGGAGE--IDLQILSKVQAQYPGVCIN-NEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS--SEYQSRML 116 (280)
T ss_dssp EEEEEETCTTSH--HHHHHHHHHHHHSTTCEEE-EEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH--HHHHHHHT
T ss_pred CEEEEECCCCCH--HHHHHHHHHHHHCCCCCEE-EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH--HHHCCHHC
T ss_conf 869998487898--8899998755532477539-999808589999999887524655322111002245--43200110
Q ss_pred CCC--CCCCEEEEECCC---CCCHHHHHHH-CCCCCCEEEEEE
Q ss_conf 899--981189980896---6829999975-498998499981
Q 027826 110 DGL--VDIDFLVVDSRR---KDFARVLRLA-NLSSRGAVLVCK 146 (218)
Q Consensus 110 ~~l--~~~DfVFIDa~K---~~Y~~~~~~~-~L~~~GgiIv~D 146 (218)
... ++||+|+.=.-- .+....++.+ +++++||.+++-
T Consensus 117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCCCEEEEEECCCEECCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 5677786449998131244789999999997618889799999
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.91 E-value=0.00059 Score=39.57 Aligned_cols=74 Identities=11% Similarity=-0.023 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC-EEEEECCC
Q ss_conf 88889999999998569993999375756189999999864989969999973982089999999658994-39998379
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGEA 103 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~-I~~i~GdA 103 (218)
+++...+-+-..+......+|||||.+.|. -+..|+.. +.+ ++.+|.++......+... .+.. +++++||+
T Consensus 5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~--LT~~Ll~~----~~~-v~avE~D~~l~~~l~~~~-~~~~n~~i~~~D~ 76 (235)
T d1qama_ 5 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGH--FTLELVQR----CNF-VTAIEIDHKLCKTTENKL-VDHDNFQVLNKDI 76 (235)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSH--HHHHHHHH----SSE-EEEECSCHHHHHHHHHHT-TTCCSEEEECCCG
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHHHHC----CCC-EEEEEECCCHHHHHHHHH-HCCCCHHHHHHHH
T ss_conf 788999999995689998969997897009--99999817----684-289862541688999874-2223124554565
Q ss_pred CCHHH
Q ss_conf 95011
Q 027826 104 DDEEL 108 (218)
Q Consensus 104 ~~~e~ 108 (218)
+++
T Consensus 77 --l~~ 79 (235)
T d1qama_ 77 --LQF 79 (235)
T ss_dssp --GGC
T ss_pred --HHC
T ss_conf --513
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.0018 Score=36.81 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=72.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCCEEEEECCCCCHH--
Q ss_conf 99999998569993999375756189999999864989969999973982089999999-658994399983799501--
Q 027826 31 ELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFSPQVITGEADDEE-- 107 (218)
Q Consensus 31 ~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~I~~i~GdA~~~e-- 107 (218)
+.+..| ....-..+|++++++|- -+..++...+ ++++++ ++.++++...++.. ..++..+.+++++. .+
T Consensus 14 evi~~l-~~~~~~~~lD~t~G~Gg--hs~~il~~~~--~~~vi~-~D~d~~~l~~a~~~l~~~~~r~~~~~~~f--~~~~ 85 (192)
T d1m6ya2 14 EVIEFL-KPEDEKIILDCTVGEGG--HSRAILEHCP--GCRIIG-IDVDSEVLRIAEEKLKEFSDRVSLFKVSY--READ 85 (192)
T ss_dssp HHHHHH-CCCTTCEEEETTCTTSH--HHHHHHHHCT--TCEEEE-EESCHHHHHHHHHHTGGGTTTEEEEECCG--GGHH
T ss_pred HHHHHH-CCCCCCEEEEECCCCCH--HHHHHHHCCC--CCEEEE-EECHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHH
T ss_conf 999852-87999989994587958--8899984199--976998-62438899999986303464432006778--6699
Q ss_pred -HCCCC--CCCCEEEEECCC------------CCCHHHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf -10899--981189980896------------6829999975-498998499981887778
Q 027826 108 -LMDGL--VDIDFLVVDSRR------------KDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 108 -~L~~l--~~~DfVFIDa~K------------~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
.+..+ ++||.|++|.-- ....+.++.+ .++++||.+++ +.+|.
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i--i~f~s 144 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV--ISFHS 144 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE--EESSH
T ss_pred HHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEE--ECCCC
T ss_conf 999975987746566606512745023332014699999999983487874620--10344
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.79 E-value=0.0045 Score=34.57 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=65.1
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC--EEEEECCCCCHHHCCCCCCCC
Q ss_conf 569993999375756189999999864989969999973982089999999658994--399983799501108999811
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~D 116 (218)
..+.++||+||++.|. .++.++++.++ -+ .+..+. ++ ....++.. |+++.||. .+.. +.+|
T Consensus 78 ~~~~~~vvDvGGG~G~--~~~~l~~~~P~--l~-~~v~Dl-p~------vi~~~~~~~rv~~~~gD~--f~~~---p~aD 140 (244)
T d1fp2a2 78 FDGLESIVDVGGGTGT--TAKIICETFPK--LK-CIVFDR-PQ------VVENLSGSNNLTYVGGDM--FTSI---PNAD 140 (244)
T ss_dssp HTTCSEEEEETCTTSH--HHHHHHHHCTT--CE-EEEEEC-HH------HHTTCCCBTTEEEEECCT--TTCC---CCCS
T ss_pred CCCCEEEEEECCCCCH--HHHHHHHHCCC--CE-EEEECC-HH------HHHHCCCCCCEEEEECCC--CCCC---CCCC
T ss_conf 5685089995588638--98999986999--74-998427-88------897374468457984676--6679---9874
Q ss_pred EEEE-----ECCCCCCHHHHHHH--CCCCC---CEEEEEECCCCCC
Q ss_conf 8998-----08966829999975--49899---8499981887778
Q 027826 117 FLVV-----DSRRKDFARVLRLA--NLSSR---GAVLVCKNAYSRN 152 (218)
Q Consensus 117 fVFI-----Da~K~~Y~~~~~~~--~L~~~---GgiIv~DNvl~~G 152 (218)
++++ |-+.+...+.++.+ .|.+. |-++|+|.++-..
T Consensus 141 ~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~ 186 (244)
T d1fp2a2 141 AVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKK 186 (244)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC
T ss_conf 8999850101785899999999999748356771799998633898
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.73 E-value=0.0074 Score=33.32 Aligned_cols=93 Identities=13% Similarity=0.117 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH-HHHHHHCCCC-EEEEEC
Q ss_conf 88888999999999856999399937575618999999986498996999997398208999-9999658994-399983
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEY-VHALGEAGFS-PQVITG 101 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~-a~~~~~agl~-I~~i~G 101 (218)
.+.....++...++....-.+||++-.+-|- -++.||..+.. .|.++ ..+.++.+... .+.+.+.|.. +.+...
T Consensus 99 ~vQD~aS~l~~~~l~~~~g~~vlD~CAapGg--Kt~~l~~~~~~-~~~i~-a~d~~~~r~~~l~~~~~r~~~~~i~~~~~ 174 (313)
T d1ixka_ 99 YIQEASSMYPPVALDPKPGEIVADMAAAPGG--KTSYLAQLMRN-DGVIY-AFDVDENRLRETRLNLSRLGVLNVILFHS 174 (313)
T ss_dssp EECCHHHHHHHHHHCCCTTCEEEECCSSCSH--HHHHHHHHTTT-CSEEE-EECSCHHHHHHHHHHHHHHTCCSEEEESS
T ss_pred EEECCCCCCHHHCCCCCCCCEEEECCCCHHH--HHHHHHHHCCC-CCCEE-EECCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 9805534331330467765256201441355--66765443146-66225-53047889999999888877624222235
Q ss_pred CCCCHHHCCCC-CCCCEEEEECC
Q ss_conf 79950110899-98118998089
Q 027826 102 EADDEELMDGL-VDIDFLVVDSR 123 (218)
Q Consensus 102 dA~~~e~L~~l-~~~DfVFIDa~ 123 (218)
|+ ... +.. ..||.|++|+.
T Consensus 175 d~--~~~-~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 175 SS--LHI-GELNVEFDKILLDAP 194 (313)
T ss_dssp CG--GGG-GGGCCCEEEEEEECC
T ss_pred CC--CCC-CCCCCCCCEEEECCC
T ss_conf 64--211-244665567997365
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.69 E-value=0.0023 Score=36.22 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=54.1
Q ss_pred HHHHHCC-----CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHH-HHHHHC----CC-----C-EEE
Q ss_conf 9998569-----993999375756189999999864989969999973982089999-999658----99-----4-399
Q 027826 35 AMAAGWD-----ARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYV-HALGEA----GF-----S-PQV 98 (218)
Q Consensus 35 ~L~~~~~-----ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~a----gl-----~-I~~ 98 (218)
.|+++.+ ..+||..-.+.|- -++-||.. |.+ |+.+|.++...... ..+.++ .. . +++
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~--Da~vlA~~----G~~-V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~l 149 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGR--DAFVLASV----GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCH--HHHHHHHH----TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEE
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCH--HHHHHHHC----CCE-EEEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHEE
T ss_conf 7999856878999879988886558--89999867----997-9998467999999999999987171567888643415
Q ss_pred EECCCCCHHHCCCCC-CCCEEEEEC
Q ss_conf 983799501108999-811899808
Q 027826 99 ITGEADDEELMDGLV-DIDFLVVDS 122 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-~~DfVFIDa 122 (218)
++||+ .+.|.++. .||.||+|-
T Consensus 150 i~~Ds--~~~L~~~~~~~DvIYlDP 172 (250)
T d2oyra1 150 IHASS--LTALTDITPRPQVVYLDP 172 (250)
T ss_dssp EESCH--HHHSTTCSSCCSEEEECC
T ss_pred ECCCH--HHHHHCCCCCCCEEEECC
T ss_conf 35868--999851587789899888
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0011 Score=38.05 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 88889999999998569993999375756189999999864989969999973982089999999658994399983799
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEAD 104 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~ 104 (218)
+++....-+.-.+.....+.|||||.+.|++ +-.|+. .+.+ +..+|.|+......+......-.+++++||+
T Consensus 5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~L--T~~Ll~----~~~~-v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~- 76 (252)
T d1qyra_ 5 NDQFVIDSIVSAINPQKGQAMVEIGPGLAAL--TEPVGE----RLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDA- 76 (252)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEEECCTTTTT--HHHHHT----TCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCG-
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCHHH--HHHHHC----CCCC-EEEEEECCCHHHHHHHHHHHCCCHHHHHHHH-
T ss_conf 7899999999842899979799979984199--999972----6896-5999943432689988765123236776454-
Q ss_pred CHHH
Q ss_conf 5011
Q 027826 105 DEEL 108 (218)
Q Consensus 105 ~~e~ 108 (218)
++.
T Consensus 77 -l~~ 79 (252)
T d1qyra_ 77 -MTF 79 (252)
T ss_dssp -GGC
T ss_pred -HHH
T ss_conf -541
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.014 Score=31.84 Aligned_cols=107 Identities=11% Similarity=-0.010 Sum_probs=58.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH-HHCCCC-----------------------
Q ss_conf 69993999375756189999999864989969999973982089999999-658994-----------------------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHAL-GEAGFS----------------------- 95 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~-~~agl~----------------------- 95 (218)
.+.++|||+|++.|. -++.++. .+++-|+-++..+.....++.. .+.+..
T Consensus 50 ~~g~~vLDlGcG~G~--~~~~~~~----~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (257)
T d2a14a1 50 LQGDTLIDIGSGPTI--YQVLAAC----DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEK 123 (257)
T ss_dssp CCEEEEEESSCTTCC--GGGTTGG----GTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCEEEEECCCCCH--HHHHHHC----CCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 889889997798887--6999730----4357389845999999999987764563201226888998741652137787
Q ss_pred -------E-EEEECCCCCHHHCCCC--CCCCEEEEECC-------CCCCHHHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf -------3-9998379950110899--98118998089-------66829999975-498998499981887778
Q 027826 96 -------P-QVITGEADDEELMDGL--VDIDFLVVDSR-------RKDFARVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 96 -------I-~~i~GdA~~~e~L~~l--~~~DfVFIDa~-------K~~Y~~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
+ .....+......+... .+||.|+.-.. .+.+..+++.+ +++++||.++.......+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~ 198 (257)
T d2a14a1 124 EEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP 198 (257)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf 777766553034211225533356667762178662149871424888999999998604899579999843666
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.018 Score=31.13 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=56.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHH-HCCCC-----------------------
Q ss_conf 699939993757561899999998649899699999739820899999996-58994-----------------------
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALG-EAGFS----------------------- 95 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~-~agl~----------------------- 95 (218)
.+.+++||+|++.|. .++ ..+.+. ..+++. .+..+...+.++.+. +.+..
T Consensus 53 ~~g~~vLDiGcG~g~--~~~--~~~~~~-~~~v~~-~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 126 (263)
T d2g72a1 53 VSGRTLIDIGSGPTV--YQL--LSACSH-FEDITM-TDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDK 126 (263)
T ss_dssp SCCSEEEEETCTTCC--GGG--TTGGGG-CSEEEE-ECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHH
T ss_pred CCCCEEEEECCCCCH--HHH--HHHCCC-CCEEEE-EECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 888678996257878--899--975666-776999-80899999999998751866556002456664200445405566
Q ss_pred -------E-EEEECCCCCHHHCCCC---C-CCCEEEE----EC---CCCCCHHHHHHH-CCCCCCEEEEEECCCC
Q ss_conf -------3-9998379950110899---9-8118998----08---966829999975-4989984999818877
Q 027826 96 -------P-QVITGEADDEELMDGL---V-DIDFLVV----DS---RRKDFARVLRLA-NLSSRGAVLVCKNAYS 150 (218)
Q Consensus 96 -------I-~~i~GdA~~~e~L~~l---~-~~DfVFI----Da---~K~~Y~~~~~~~-~L~~~GgiIv~DNvl~ 150 (218)
+ .+...|.+....+... . +||+|.. .+ +.++|...++.+ +++++||++|.=..+.
T Consensus 127 ~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 127 ERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp HHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 787666650343211267876566776767537560077799870499999999999998728897799951357
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0056 Score=34.03 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCC--EEEEEC
Q ss_conf 888899999999985699939993757561899999998649899699999739820899999-99658994--399983
Q 027826 25 HESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFS--PQVITG 101 (218)
Q Consensus 25 i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~--I~~i~G 101 (218)
+++...+-+...+....-..|||||.+.|. -|-.|+.. +.+ ++.+|.|+.....-+ .+...... ++++++
T Consensus 5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~--LT~~Ll~~----~~~-v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~ 77 (278)
T d1zq9a1 5 KNPLIINSIIDKAALRPTDVVLEVGPGTGN--MTVKLLEK----AKK-VVACELDPRLVAELHKRVQGTPVASKLQVLVG 77 (278)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTST--THHHHHHH----SSE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEES
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEECCCCHH--HHHHHHHC----CCC-EEEEEECCCHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 889999999997189998989997998039--99999835----995-89999762243789988754300000105678
Q ss_pred CCCCHHH
Q ss_conf 7995011
Q 027826 102 EADDEEL 108 (218)
Q Consensus 102 dA~~~e~ 108 (218)
|+ ++.
T Consensus 78 D~--l~~ 82 (278)
T d1zq9a1 78 DV--LKT 82 (278)
T ss_dssp CT--TTS
T ss_pred HH--HHH
T ss_conf 88--620
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.027 Score=30.16 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC-EEEEECC
Q ss_conf 888889999999998569993999375756189999999864989969999973982089999999658994-3999837
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~-I~~i~Gd 102 (218)
.+.....++...+.......+||++-.+-|= =++.||..+. +|++++.+..........+.+.+.|+. +.+...+
T Consensus 85 ~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGg--Kt~~la~l~~--~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~ 160 (284)
T d1sqga2 85 TVQDASAQGCMTWLAPQNGEHILDLCAAPGG--KTTHILEVAP--EAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG 160 (284)
T ss_dssp EECCHHHHTHHHHHCCCTTCEEEEESCTTCH--HHHHHHHHCT--TCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT
T ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCCCCC--CHHHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 9503442000123676555236762676664--0033334321--13335542564555667655410453220332132
Q ss_pred CCCHHHCCCC-CCCCEEEEECCCCC------------------CH-------HHHHHH-CCCCCCEEEEEECCCCCC
Q ss_conf 9950110899-98118998089668------------------29-------999975-498998499981887778
Q 027826 103 ADDEELMDGL-VDIDFLVVDSRRKD------------------FA-------RVLRLA-NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 103 A~~~e~L~~l-~~~DfVFIDa~K~~------------------Y~-------~~~~~~-~L~~~GgiIv~DNvl~~G 152 (218)
+ ...-... ..||.||+|+.=.. .. +.++.+ +++++||.+|.--=...-
T Consensus 161 ~--~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 161 R--YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp T--CTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred C--CCCHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
T ss_conf 3--42001023565579983651146754552002112364104678889999999998735777667776405862
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.04 E-value=0.012 Score=32.14 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=62.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC--EEEEECCCCCHHHCCCCCCCCE
Q ss_conf 69993999375756189999999864989969999973982089999999658994--3999837995011089998118
Q 027826 40 WDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDIDF 117 (218)
Q Consensus 40 ~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~Df 117 (218)
.+.++||+||++.|. .++.++++.+ +-+ .+..+.++ .. ..+... ++++.||. .+-+|. .|.
T Consensus 80 ~~~~~vvDvGGG~G~--~~~~l~~~~P--~l~-~~v~Dlp~-vi------~~~~~~~r~~~~~~d~--~~~~P~---ad~ 142 (243)
T d1kyza2 80 EGLKSLVDVGGGTGA--VINTIVSKYP--TIK-GINFDLPH-VI------EDAPSYPGVEHVGGDM--FVSIPK---ADA 142 (243)
T ss_dssp SSCSEEEEETCTTSH--HHHHHHHHCT--TSE-EEEEECTT-TT------TTCCCCTTEEEEECCT--TTCCCC---CSC
T ss_pred CCCCEEEEECCCCCH--HHHHHHHHCC--CCE-EEECCCHH-HH------HHCCCCCCEEEECCCC--CCCCCC---CCE
T ss_conf 588679995689847--8899999789--982-99813477-66------5324687658742661--335787---645
Q ss_pred EEEEC-----CCCCCHHHHHHH--CCCCCCEEEEEECCCCCC
Q ss_conf 99808-----966829999975--498998499981887778
Q 027826 118 LVVDS-----RRKDFARVLRLA--NLSSRGAVLVCKNAYSRN 152 (218)
Q Consensus 118 VFIDa-----~K~~Y~~~~~~~--~L~~~GgiIv~DNvl~~G 152 (218)
.|+=. +.+.....++.+ .|.|.|.++|+|.++...
T Consensus 143 ~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~ 184 (243)
T d1kyza2 143 VFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVA 184 (243)
T ss_dssp EECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSS
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf 899998604888899999999998669876379999873477
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.03 E-value=0.0022 Score=36.30 Aligned_cols=96 Identities=10% Similarity=0.001 Sum_probs=63.7
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC--EEEEECCCCCHHHCCCCCCCC
Q ss_conf 569993999375756189999999864989969999973982089999999658994--399983799501108999811
Q 027826 39 GWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS--PQVITGEADDEELMDGLVDID 116 (218)
Q Consensus 39 ~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~--I~~i~GdA~~~e~L~~l~~~D 116 (218)
..+.++||+||.+.|. .++.++++.+ +-+ .+..+. ++. ...++.. |+++.||. .+.+| +.|
T Consensus 79 f~~~~~vlDiGGG~G~--~~~~l~~~~P--~l~-~~v~Dl-p~v------i~~~~~~~ri~~~~gd~--~~~~p---~~D 141 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGR--NLELIISKYP--LIK-GINFDL-PQV------IENAPPLSGIEHVGGDM--FASVP---QGD 141 (244)
T ss_dssp TTTCSEEEEETCTTSH--HHHHHHHHCT--TCE-EEEEEC-HHH------HTTCCCCTTEEEEECCT--TTCCC---CEE
T ss_pred CCCCCEEEEECCCCCH--HHHHHHHHCC--CCE-EEEECC-HHH------HHCCCCCCCEEEECCCC--CCCCC---CCE
T ss_conf 5688379996389768--9999999889--976-999456-566------53247788807746776--66666---656
Q ss_pred EEEEECCCCCC-----HHHHHHH--CCCCCCEEEEEECCCCC
Q ss_conf 89980896682-----9999975--49899849998188777
Q 027826 117 FLVVDSRRKDF-----ARVLRLA--NLSSRGAVLVCKNAYSR 151 (218)
Q Consensus 117 fVFIDa~K~~Y-----~~~~~~~--~L~~~GgiIv~DNvl~~ 151 (218)
.+++=.--+++ ...++.+ .|.|.|-++|+|.++-.
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~ 183 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred EEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 999704123288789999999999975987679999887148
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.35 E-value=0.05 Score=28.65 Aligned_cols=126 Identities=11% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCEEEE
Q ss_conf 28788888999999999856999399937575618999999986498996999997398208999999-96589943999
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQVI 99 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~I~~i 99 (218)
+.+.-.|.+..+=..|+.+-++...+= +.+|. +||....++..+|.++++....-.......+. +.+.|+.+.++
T Consensus 43 Y~R~~nPt~~~le~~la~LE~~~~a~~--fsSGM--aAisall~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~ 118 (380)
T d1ibja_ 43 YTRSGNPTRDALESLLAKLDKADRAFC--FTSGM--AALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRV 118 (380)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSEEEE--ESSHH--HHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEE--HHHHH--HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 408988689999999999719861886--03199--99999998627998799974033554012222110454212235
Q ss_pred ECCCCCHHHCC-CCC-CCCEEEEEC--CCCCCHHHHHHH-CCC-CCCEEEEEECCCCCC
Q ss_conf 83799501108-999-811899808--966829999975-498-998499981887778
Q 027826 100 TGEADDEELMD-GLV-DIDFLVVDS--RRKDFARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 100 ~GdA~~~e~L~-~l~-~~DfVFIDa--~K~~Y~~~~~~~-~L~-~~GgiIv~DNvl~~G 152 (218)
..+- .+-+. .+. .-.+||+.. +.-.-...++.+ ++. ..|..+|+||++..+
T Consensus 119 d~~~--~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP 175 (380)
T d1ibja_ 119 NTTK--LDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSP 175 (380)
T ss_dssp CTTS--HHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCT
T ss_pred CCCH--HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 7516--78877775067618996142443223445899999998759808962430043
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.058 Score=28.25 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEEE
Q ss_conf 287888889999999998569993999375756189999999-8649899699999739820899999-99658994399
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQV 98 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA-~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~~ 98 (218)
+.+.-.|.+..|=..|+++.++...+= +.+|. +||..+ .++..+|.++++....-......-+ .+.+.|+.+.+
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~~a~~--~~SGM--aAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~ 127 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGAGCVL--FPCGA--AAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSW 127 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCSEEEE--ESSHH--HHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCEEE--ECCCC--CEEEEHHHCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCC
T ss_conf 678998659999999999819952798--51500--01110222046778769983355520133322011233333200
Q ss_pred EECCCCCHHHCC-CCC-CCCEEEEECCCCCCHHH--HHHH-CC---CCCCEEEEEECCCCCC
Q ss_conf 983799501108-999-81189980896682999--9975-49---8998499981887778
Q 027826 99 ITGEADDEELMD-GLV-DIDFLVVDSRRKDFARV--LRLA-NL---SSRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~-~l~-~~DfVFIDa~K~~Y~~~--~~~~-~L---~~~GgiIv~DNvl~~G 152 (218)
+... +.+-+. .+. .-++||+-..-....+. ++.+ ++ ..+|.++|+||++..+
T Consensus 128 ~d~~--d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP 187 (391)
T d1cl1a_ 128 FDPL--IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAG 187 (391)
T ss_dssp ECTT--CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTT
T ss_pred CCCC--CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 2673--11122233345553355303576532112327899988741578279985343323
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=94.96 E-value=0.00043 Score=40.33 Aligned_cols=75 Identities=9% Similarity=-0.038 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCC-EEEEECC
Q ss_conf 888889999999998569993999375756189999999864989969999973982089999999658994-3999837
Q 027826 24 SHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFS-PQVITGE 102 (218)
Q Consensus 24 ~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~-I~~i~Gd 102 (218)
.+++...+-+--.+.......|||||.+.|. -|..|+.. +.+ ++.+|.++++....+.. ..+.. +++++||
T Consensus 12 L~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~--LT~~L~~~----~~~-v~aIE~D~~l~~~l~~~-~~~~~n~~ii~~D 83 (245)
T d1yuba_ 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGH--LTTKLAKI----SKQ-VTSIELDSHLFNLSSEK-LKLNTRVTLIHQD 83 (245)
T ss_dssp CCCTTTHHHHHHHCCCCSSEEEEECSCCCSS--CSHHHHHH----SSE-EEESSSSCSSSSSSSCT-TTTCSEEEECCSC
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEEECCCCCH--HHHHHHHH----CCC-EEEEEECCCCHHHHHHH-HHHCCCHHHHHHH
T ss_conf 6899999999995489999968997898629--99999851----572-16753021101344321-3211303565456
Q ss_pred CCCHHH
Q ss_conf 995011
Q 027826 103 ADDEEL 108 (218)
Q Consensus 103 A~~~e~ 108 (218)
+ +++
T Consensus 84 ~--l~~ 87 (245)
T d1yuba_ 84 I--LQF 87 (245)
T ss_dssp C--TTT
T ss_pred H--HCC
T ss_conf 5--403
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=94.36 E-value=0.048 Score=28.74 Aligned_cols=125 Identities=13% Similarity=0.123 Sum_probs=78.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEE
Q ss_conf 2878888899999999985699939993757561899999--998649899699999739820899999-9965899439
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaig--LA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~ 97 (218)
+.+.-.|.+..|=..|+++.++...+=+ .+|. .||. +... .++|.++++....-.......+ .+.+.|+.++
T Consensus 53 Y~R~~nPT~~~LE~~la~LEg~~~a~~~--~SGm--aAi~~~l~~l-~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~ 127 (392)
T d1gc0a_ 53 YSRISNPTLNLLEARMASLEGGEAGLAL--ASGM--GAITSTLWTL-LRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLR 127 (392)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSEEEEE--SSHH--HHHHHHHHHH-CCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEH--HHHH--HHHHHHHHHH-CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 3289886899999999998399511101--4478--9999998752-369980001211110145564321024774224
Q ss_pred EEECCCCCHHHCCC-CC-CCCEEEEECCCCCCH--HHHHHH-CCC-CCCEEEEEECCCCCC
Q ss_conf 99837995011089-99-811899808966829--999975-498-998499981887778
Q 027826 98 VITGEADDEELMDG-LV-DIDFLVVDSRRKDFA--RVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 98 ~i~GdA~~~e~L~~-l~-~~DfVFIDa~K~~Y~--~~~~~~-~L~-~~GgiIv~DNvl~~G 152 (218)
++-..- .+-+.+ ++ .-++||+-..-.... ..++.+ ++. ..|.++++||++..+
T Consensus 128 ~~d~~d--~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP 186 (392)
T d1gc0a_ 128 HVDMAD--LQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTP 186 (392)
T ss_dssp EECTTC--HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHH
T ss_pred CCCCCC--HHHHHHHCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 578667--99999847878759996466632135424399999998459879983672574
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=93.79 E-value=0.08 Score=27.47 Aligned_cols=125 Identities=11% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEE
Q ss_conf 2878888899999999985699939993757561899999--998649899699999739820899999-9965899439
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaig--LA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~ 97 (218)
+.+.-.|.+.+|=..|+.+.++...+=+. +|. +||. +.. +.++|.++++....-........ .+.+.|++++
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~~a~~~s--SGm--aAi~~~l~~-ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~ 131 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGEAGLATA--SGI--SAITTTLLT-LCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVR 131 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCSEEEEES--SHH--HHHHHHHHH-HCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEE
T ss_pred EECCCCHHHHHHHHHHHHHHCCCCCEEEH--HHH--HHHHHHHHH-CCCCCCEEEEECCCCCCCCHHHHCCCCCCCEEEE
T ss_conf 65898878999999999984996211106--778--888887763-1689986543010123310354313677855754
Q ss_pred EEECCCCCHHHCC-CCC-CCCEEEEECCCCCCHH--HHHHH-CCC-CCCEEEEEECCCCCC
Q ss_conf 9983799501108-999-8118998089668299--99975-498-998499981887778
Q 027826 98 VITGEADDEELMD-GLV-DIDFLVVDSRRKDFAR--VLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 98 ~i~GdA~~~e~L~-~l~-~~DfVFIDa~K~~Y~~--~~~~~-~L~-~~GgiIv~DNvl~~G 152 (218)
++...- .+-+. .+. .-.+||+...-.-..+ .++.+ ++. ..|.++++||++...
T Consensus 132 ~vd~~d--~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP 190 (397)
T d1y4ia1 132 FVDAGK--PEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSP 190 (397)
T ss_dssp EECTTS--HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCCCCC--HHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 148999--89999865877738980487522110033078998860478528702752271
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.54 E-value=0.094 Score=27.07 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 88899999999985699939993757561899999998649899699999739820899999996589943999837995
Q 027826 26 ESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADD 105 (218)
Q Consensus 26 ~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~ 105 (218)
++..++||..++......+|||.++++|. -.+.+...... ... +.-+|.++.....+ -...+++++.
T Consensus 4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~--fl~~~~~~~~~-~~~-i~g~ei~~~~~~~~-------~~~~~~~~~~-- 70 (223)
T d2ih2a1 4 PPEVVDFMVSLAEAPRGGRVLEPACAHGP--FLRAFREAHGT-AYR-FVGVEIDPKALDLP-------PWAEGILADF-- 70 (223)
T ss_dssp CHHHHHHHHHHCCCCTTCEEEEETCTTCH--HHHHHHHHHCS-CSE-EEEEESCTTTCCCC-------TTEEEEESCG--
T ss_pred CHHHHHHHHHHCCCCCCCEEEECCCCHHH--HHHHHHHHCCC-CCE-EEEEECCHHHHHHC-------CCCEEEEEEH--
T ss_conf 78999999995288996999978786579--99999986644-552-78664588888513-------3322553201--
Q ss_pred HHHCCCCCCCCEEEEECC
Q ss_conf 011089998118998089
Q 027826 106 EELMDGLVDIDFLVVDSR 123 (218)
Q Consensus 106 ~e~L~~l~~~DfVFIDa~ 123 (218)
....+ ...||++.-+-.
T Consensus 71 ~~~~~-~~~fd~ii~npP 87 (223)
T d2ih2a1 71 LLWEP-GEAFDLILGNPP 87 (223)
T ss_dssp GGCCC-SSCEEEEEECCC
T ss_pred HCCCC-CCCCCEECCCCC
T ss_conf 03343-323001024686
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=92.91 E-value=0.097 Score=26.99 Aligned_cols=126 Identities=13% Similarity=0.059 Sum_probs=78.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEEE
Q ss_conf 2878888899999999985699939993757561899999-998649899699999739820899999-99658994399
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG-LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQV 98 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaig-LA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~~ 98 (218)
+.+.-.|.+-.+=..|+.+-++...+= +.+|. +||. ...++.++|.++++....-.......+ .+.+.|+.+.+
T Consensus 52 YsR~~nPT~~~LE~~la~LE~~~~a~~--~~SGm--aAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~ 127 (421)
T d2ctza1 52 YSRIMNPTVDVLEKRLAALEGGKAALA--TASGH--AAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRF 127 (421)
T ss_dssp CBTTBCHHHHHHHHHHHHHHTCSEEEE--ESSHH--HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEE--ECCHH--HHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 149988789999999999839972887--61868--99999987505466631222776774267899987432302100
Q ss_pred EECCCCCHHHCCC-CC-CCCEEEEECCCCCCHH--HHHHH-CCC-CCCEEEEEECCCCC
Q ss_conf 9837995011089-99-8118998089668299--99975-498-99849998188777
Q 027826 99 ITGEADDEELMDG-LV-DIDFLVVDSRRKDFAR--VLRLA-NLS-SRGAVLVCKNAYSR 151 (218)
Q Consensus 99 i~GdA~~~e~L~~-l~-~~DfVFIDa~K~~Y~~--~~~~~-~L~-~~GgiIv~DNvl~~ 151 (218)
+-.+. ..+.... .+ .-.+||+...-....+ .++.+ ++. ..|.++|+||++..
T Consensus 128 ~d~~~-~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~ 185 (421)
T d2ctza1 128 TSREE-RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp CCTTC-CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred CCCCC-CCCHHCCCCCCCCEEEEECCCCCCEEEECCHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 36655-74000022577726999717986526753558899988744973674353233
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.51 E-value=0.19 Score=25.33 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=75.2
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHCCCCCCEEEEEECCCCCHHHHHHH-HHHCCCCEEE
Q ss_conf 28788888999999999856999399937575618999999-986498996999997398208999999-9658994399
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGL-AVASRHTGGRHVCLVPDERSRSEYVHA-LGEAGFSPQV 98 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigL-A~a~~~~~g~vi~t~e~~~~~~~~a~~-~~~agl~I~~ 98 (218)
+.+.-.|.+..|=..|+.+.++...+= +.+|. +||.. ..++.++|.++++....-.......+. +.+.|+.+.+
T Consensus 61 Y~R~~nPt~~~LE~~la~LEgg~~a~~--~sSGM--aAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~ 136 (398)
T d1qgna_ 61 YGRYGNPTTVVLEEKISALEGAESTLL--MASGM--CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATV 136 (398)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCSEEEE--ESCHH--HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEE--ECCCC--HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf 439988689999999999829934889--64864--68888876303455432322221011333210343456643222
Q ss_pred EECCCCCHHHCCCC--CCCCEEEEECCCCCC--HHHHHHH-CCC-CCCEEEEEECCCCCC
Q ss_conf 98379950110899--981189980896682--9999975-498-998499981887778
Q 027826 99 ITGEADDEELMDGL--VDIDFLVVDSRRKDF--ARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~~l--~~~DfVFIDa~K~~Y--~~~~~~~-~L~-~~GgiIv~DNvl~~G 152 (218)
....- ..+..... +.-.+||+-..-... ...++.+ .+. ..|.++|+||++-.+
T Consensus 137 ~~~~~-~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP 195 (398)
T d1qgna_ 137 IDPAD-VGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATP 195 (398)
T ss_dssp ECSSC-HHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCCCC-HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECC
T ss_conf 44221-023343210356317970574300024321799999886449879961502144
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=0.37 Score=23.72 Aligned_cols=125 Identities=14% Similarity=0.071 Sum_probs=73.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH--HHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEE
Q ss_conf 2878888899999999985699939993757561899999--998649899699999739820899999-9965899439
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVG--LAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQ 97 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaig--LA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~ 97 (218)
+.+.-.|.+..|=..|+.+-++...+= +.+|. +||. +... ..+|.++++....-........ .+.+.|..+.
T Consensus 44 Y~R~~nPt~~~le~~la~LEgg~~a~~--~sSGM--aAi~~~l~~l-~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~ 118 (384)
T d1cs1a_ 44 YSRRGNPTRDVVQRALAELEGGAGAVL--TNTGM--SAIHLVTTVF-LKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL 118 (384)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSEEEE--ESSHH--HHHHHHHHHH-CCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEE--ECCHH--HHHHHHHHHC-CCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 318988789999999999829970688--43727--9999998631-445550013465200246665421122333222
Q ss_pred EEECCCCCHHHCC-CC-CCCCEEEEECCCCC--CHHHHHHH-CCC-CCCEEEEEECCCCCC
Q ss_conf 9983799501108-99-98118998089668--29999975-498-998499981887778
Q 027826 98 VITGEADDEELMD-GL-VDIDFLVVDSRRKD--FARVLRLA-NLS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 98 ~i~GdA~~~e~L~-~l-~~~DfVFIDa~K~~--Y~~~~~~~-~L~-~~GgiIv~DNvl~~G 152 (218)
+....- .+.+. .+ +.-.+||+-..-.. ....++.+ ++. ..|.++|+||++..+
T Consensus 119 ~~d~~d--~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP 177 (384)
T d1cs1a_ 119 FVDQGD--EQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP 177 (384)
T ss_dssp EECTTC--HHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred CCCCCC--HHHHHHHCCCCCCEEEEECCCCCCCEECCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 356788--79998621666627997145665301045788755454148679971553474
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=90.10 E-value=0.49 Score=23.01 Aligned_cols=127 Identities=12% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-HHCCCCCCEEEEEECCCCCHHHHH-HHHHHCCCCEEE
Q ss_conf 287888889999999998569993999375756189999999-864989969999973982089999-999658994399
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLA-VASRHTGGRHVCLVPDERSRSEYV-HALGEAGFSPQV 98 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA-~a~~~~~g~vi~t~e~~~~~~~~a-~~~~~agl~I~~ 98 (218)
+.+.-.|.+..|=..|+++.++...+-+ .+|. +||..+ .++..++.++++....-....... ..+.+.|+.+++
T Consensus 53 YsR~~nPT~~~le~~la~LEg~~~a~~~--sSGm--aAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~ 128 (394)
T d1e5ea_ 53 YTRLGNPTVSNLEGKIAFLEKTEACVAT--SSGM--GAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDF 128 (394)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSEEEEE--SSHH--HHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEE--CCCH--HHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCEEEEC
T ss_conf 4598887899999999998298502234--3622--88899987402334433445413200367677776305435421
Q ss_pred EECCCCCHHHCCCCC-CCCEEEEECC--CCCCHHHHH-HHC-CC-CCCEEEEEECCCCCC
Q ss_conf 983799501108999-8118998089--668299999-754-98-998499981887778
Q 027826 99 ITGEADDEELMDGLV-DIDFLVVDSR--RKDFARVLR-LAN-LS-SRGAVLVCKNAYSRN 152 (218)
Q Consensus 99 i~GdA~~~e~L~~l~-~~DfVFIDa~--K~~Y~~~~~-~~~-L~-~~GgiIv~DNvl~~G 152 (218)
+...- ..++-..++ .-++||+-.. .......++ .+. .. ..|.++|+||++...
T Consensus 129 ~d~~d-~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP 187 (394)
T d1e5ea_ 129 INTAI-PGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSP 187 (394)
T ss_dssp ECTTS-TTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCT
T ss_pred CCCCC-HHHHHHHHCCCCCEEEEECCCCCCEEEEHHHHHHHCCCCCCCEEEEECCCCCCC
T ss_conf 47899-999997516456589994257763122124444201324567088733765476
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=86.61 E-value=0.75 Score=21.96 Aligned_cols=88 Identities=18% Similarity=0.069 Sum_probs=48.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCCCCCEEEEECCC
Q ss_conf 99937575618999999986498996999997398208999999965899439998379950110899981189980896
Q 027826 45 IVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLVDIDFLVVDSRR 124 (218)
Q Consensus 45 ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~l~~~DfVFIDa~K 124 (218)
|.=||+ |..|++++ .++.+.|-+ |+..+.+++..+.++ +.+...+ + .+.+..++..|+||+-..-
T Consensus 3 I~iIG~--G~mG~~lA--~~l~~~g~~-V~~~d~~~~~~~~a~---~~~~~~~-----~--~~~~~~~~~~DiIilavp~ 67 (165)
T d2f1ka2 3 IGVVGL--GLIGASLA--GDLRRRGHY-LIGVSRQQSTCEKAV---ERQLVDE-----A--GQDLSLLQTAKIIFLCTPI 67 (165)
T ss_dssp EEEECC--SHHHHHHH--HHHHHTTCE-EEEECSCHHHHHHHH---HTTSCSE-----E--ESCGGGGTTCSEEEECSCH
T ss_pred EEEEEE--CHHHHHHH--HHHHHCCCE-EEEEECCCHHHHHHH---HHHCCCE-----E--EEECCCCCCCCCCCCCCCH
T ss_conf 999910--49899999--999978998-999989803779999---8622432-----3--2210113455432246727
Q ss_pred CCCHHHHHHH-CCCCCCEEEEEECC
Q ss_conf 6829999975-49899849998188
Q 027826 125 KDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 125 ~~Y~~~~~~~-~L~~~GgiIv~DNv 148 (218)
....+.++.+ ...+++.+ |+|-.
T Consensus 68 ~~~~~vl~~l~~~l~~~~i-v~~~~ 91 (165)
T d2f1ka2 68 QLILPTLEKLIPHLSPTAI-VTDVA 91 (165)
T ss_dssp HHHHHHHHHHGGGSCTTCE-EEECC
T ss_pred HHHHHHHHHHHHHCCCCCC-EEECC
T ss_conf 6653100123321144442-15415
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.81 E-value=0.93 Score=21.44 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHHHCCCCEEEE
Q ss_conf 2878888899999999985699939993757561899999998649899699999739820899999-996589943999
Q 027826 21 CELSHESGVAELVSAMAAGWDARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVH-ALGEAGFSPQVI 99 (218)
Q Consensus 21 ~~~~i~p~~g~fL~~L~~~~~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~-~~~~agl~I~~i 99 (218)
+.+.-.|.+..|=..|+.+.++...+=+.| |. +++..+..+...+++++++...-......-+ .+.+.|.++.+.
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~~a~~~sS--Gm--aAi~~~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~ 124 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQYGLAFSS--GS--ATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSEEEEESC--HH--HHHHHHHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred EECCCCHHHHHHHHHHHHHHCCCEEEEECC--CH--HHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEE
T ss_conf 538998689999999999719954888347--01--67776653035798344322001340344454541255225885
Q ss_pred ECCCCCHHHCCC-CC-CCCEEEEECCCCCC------HHHHHHH-CCC-CCCEEEEEECCCC
Q ss_conf 837995011089-99-81189980896682------9999975-498-9984999818877
Q 027826 100 TGEADDEELMDG-LV-DIDFLVVDSRRKDF------ARVLRLA-NLS-SRGAVLVCKNAYS 150 (218)
Q Consensus 100 ~GdA~~~e~L~~-l~-~~DfVFIDa~K~~Y------~~~~~~~-~L~-~~GgiIv~DNvl~ 150 (218)
..+. . -+.. +. .-++||+-..-.-. +.+-+.+ +.. ..|.++|+||++.
T Consensus 125 ~~~~--~-~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~a 182 (393)
T d1n8pa_ 125 NDLL--N-DLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFL 182 (393)
T ss_dssp SSHH--H-HHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTT
T ss_pred ECCH--H-HHHHHHHHHCCEEEECCCCHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 1356--8-99998512013467237632343202035555444420146784599856744
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.99 E-value=0.25 Score=24.66 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=22.5
Q ss_pred EEEEECCCCCHHHCCCCC--CCCEEEEEC
Q ss_conf 399983799501108999--811899808
Q 027826 96 PQVITGEADDEELMDGLV--DIDFLVVDS 122 (218)
Q Consensus 96 I~~i~GdA~~~e~L~~l~--~~DfVFIDa 122 (218)
=.+++||+ +++|..++ ++|+|++|=
T Consensus 13 ~~l~~GD~--le~l~~l~~~sVdli~tDP 39 (320)
T d1booa_ 13 GSMYIGDS--LELLESFPEESISLVMTSP 39 (320)
T ss_dssp EEEEESCH--HHHGGGSCSSCEEEEEECC
T ss_pred CEEEEHHH--HHHHHHCCCCCCCEEEECC
T ss_conf 87996018--9998507058988899899
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=83.28 E-value=0.27 Score=24.47 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=32.1
Q ss_pred EEEECCCCCHHHCCCCC--CCCEEEEECC----------CCCCHHHHHH----H-CCCCCCEEEEE
Q ss_conf 99983799501108999--8118998089----------6682999997----5-49899849998
Q 027826 97 QVITGEADDEELMDGLV--DIDFLVVDSR----------RKDFARVLRL----A-NLSSRGAVLVC 145 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~--~~DfVFIDa~----------K~~Y~~~~~~----~-~L~~~GgiIv~ 145 (218)
-++.||+ +++|+.++ ++|+||.|=. ...|.+++.. + ++++++|.++.
T Consensus 6 ~~~~~D~--le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~ 69 (279)
T d1eg2a_ 6 VYDVCDC--LDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAI 69 (279)
T ss_dssp EEEECCH--HHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECHH--HHHHHHCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 6994119--999952867871479988999987665567778999999999999997388861899
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=82.21 E-value=0.091 Score=27.16 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=33.1
Q ss_pred EEEECCCCCHHHCCCCC--CCCEEEEECC----------CCCCHHHHH-------HH-CCCCCCEEEEEECC
Q ss_conf 99983799501108999--8118998089----------668299999-------75-49899849998188
Q 027826 97 QVITGEADDEELMDGLV--DIDFLVVDSR----------RKDFARVLR-------LA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 97 ~~i~GdA~~~e~L~~l~--~~DfVFIDa~----------K~~Y~~~~~-------~~-~L~~~GgiIv~DNv 148 (218)
++++||+ +++|+.++ ++|+|+.|=. ...+.+|++ .+ ++++++|.+++.+.
T Consensus 6 ~i~~gDc--le~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 6 KIHQMNC--FDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp SEEECCH--HHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEECCH--HHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7884529--999964868871879989899787675767789999999999999984000145765442237
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.81 E-value=1.4 Score=20.45 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=42.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHCCCCC--CCCEEEE
Q ss_conf 3999375756189999999864989969999973982089999999658994399983799501108999--8118998
Q 027826 44 LIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVITGEADDEELMDGLV--DIDFLVV 120 (218)
Q Consensus 44 ~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~GdA~~~e~L~~l~--~~DfVFI 120 (218)
+|+=+| +|.+|.. +|..+...|-. ++.++.++++..... .+. .+.+++||+++.++|.... ..|.++.
T Consensus 2 ~IvI~G--~G~~G~~--la~~L~~~g~~-v~vid~d~~~~~~~~--~~~--~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 2 YIIIAG--IGRVGYT--LAKSLSEKGHD-IVLIDIDKDICKKAS--AEI--DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp EEEEEC--CSHHHHH--HHHHHHHTTCE-EEEEESCHHHHHHHH--HHC--SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred EEEEEC--CCHHHHH--HHHHHHHCCCC-CCEECCCHHHHHHHH--HHH--HHHHCCCCCCCHHHHHHCCHHHHHHHCC
T ss_conf 899989--8899999--99999977997-200217846502101--110--0343147443116566507245432224
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.54 E-value=1.2 Score=20.80 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=50.7
Q ss_pred HHCCCCEEEEECCCCCHHHHHH-HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEE-CCCCCHHHCCCC-CC
Q ss_conf 8569993999375756189999-99986498996999997398208999999965899439998-379950110899-98
Q 027826 38 AGWDARLIVETWSHGGATATSV-GLAVASRHTGGRHVCLVPDERSRSEYVHALGEAGFSPQVIT-GEADDEELMDGL-VD 114 (218)
Q Consensus 38 ~~~~ak~ILEiGt~~GyiGtai-gLA~a~~~~~g~vi~t~e~~~~~~~~a~~~~~agl~I~~i~-GdA~~~e~L~~l-~~ 114 (218)
....-.+||-+|. +| +|... -+|++. |.++|.+. .++++.+.++.+ |.. +++. -+. .+..... +.
T Consensus 24 ~~~~g~~vlI~Ga-G~-vG~~a~q~ak~~---G~~vi~~~-~~~~k~~~a~~l---Ga~-~~i~~~~~--~~~~~~~~~~ 91 (168)
T d1piwa2 24 GCGPGKKVGIVGL-GG-IGSMGTLISKAM---GAETYVIS-RSSRKREDAMKM---GAD-HYIATLEE--GDWGEKYFDT 91 (168)
T ss_dssp TCSTTCEEEEECC-SH-HHHHHHHHHHHH---TCEEEEEE-SSSTTHHHHHHH---TCS-EEEEGGGT--SCHHHHSCSC
T ss_pred CCCCCCEEEEECC-CC-CCHHHHHHHHHC---CCCCCCCC-CCHHHHHHHHCC---CCC-EEEECCCH--HHHHHHHHCC
T ss_conf 9699999999788-87-621578876511---32100112-211278775146---886-78606434--7899864025
Q ss_pred CCEEEEECCCCCCHHHHHHH-CCCCCCEEEEEECC
Q ss_conf 11899808966829999975-49899849998188
Q 027826 115 IDFLVVDSRRKDFARVLRLA-NLSSRGAVLVCKNA 148 (218)
Q Consensus 115 ~DfVFIDa~K~~Y~~~~~~~-~L~~~GgiIv~DNv 148 (218)
+|+++ |+.-......|+.+ .+.+++|.++.=-+
T Consensus 92 ~d~vi-~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 92 FDLIV-VCASSLTDIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEEEE-ECCSCSTTCCTTTGGGGEEEEEEEEECCC
T ss_pred CCEEE-EEECCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf 63599-98267765017789988611526998166
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.92 E-value=1.5 Score=20.27 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=49.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCC-HHHHHHHHHHCCCCEEEEECCCCCHHHCCC--------
Q ss_conf 99939993757561899999998649899699999739820-899999996589943999837995011089--------
Q 027826 41 DARLIVETWSHGGATATSVGLAVASRHTGGRHVCLVPDERS-RSEYVHALGEAGFSPQVITGEADDEELMDG-------- 111 (218)
Q Consensus 41 ~ak~ILEiGt~~GyiGtaigLA~a~~~~~g~vi~t~e~~~~-~~~~a~~~~~agl~I~~i~GdA~~~e~L~~-------- 111 (218)
.=|.+|-.|.+.| ||.++ |+.+...|.+|+.+. ++++ ....++.+...|.++..+..|.++.+.+..
T Consensus 9 enKvalITGas~G-IG~a~--a~~la~~Ga~V~~~~-r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREI--AKMLAKSVSHVICIS-RTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp SSCEEEEESTTSH-HHHHH--HHHHTTTSSEEEEEE-SSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCH-HHHHH--HHHHHHCCCEEEEEE-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9988999088878-99999--999998699999997-9999999999999963994799983389999999999999985
Q ss_pred CCCCCEEEEEC
Q ss_conf 99811899808
Q 027826 112 LVDIDFLVVDS 122 (218)
Q Consensus 112 l~~~DfVFIDa 122 (218)
+..+|.+..-+
T Consensus 85 ~g~iDilvnna 95 (251)
T d2c07a1 85 HKNVDILVNNA 95 (251)
T ss_dssp CSCCCEEEECC
T ss_pred CCCCEEEEECC
T ss_conf 49831652013
|