Citrus Sinensis ID: 027859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDDTRQVSIIRHEVCQPQHSGLVFCLLEWISCLNFVWFSLIFK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEccccccccccccccccccccccEEcccEEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccEEEEEEEEccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEccccccccccccEEEEEcccccccccccEEEEcccccEEcccccEEEEEEEEEEEcccccccccccEEEEEEEEccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEEc
Coil and Loop (DISEMBL)
mcpptastpidvdfastdenLFGSLermirgsplpcnvindvnpynhrpsnlpdgVWYLVCSkentsaqhgqwrakgetceifsnsyiigWRTTLEFfegqvpnerktDWVMQEFRITQkrlygdkkeedssSLCRVFlsgkqspnheMQQKLFSANinnethshstelsfdkdkddtrqvsiirhevcqpqhsglVFCLLEWISCLNFVWFSLIFK
Flexible Loop (DISEMBL)
mcpptastpidvdfasTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTsaqhgqwrakgetCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQkrlygdkkeedsSSLCRVFLSGKQSPNHEMQQKLFSANINNETHshstelsfdkdkDDTRQVSIIRhevcqpqhSGLVFCLLEWISCLNFVWFSLIFK
Low Complexity Region (SEG)
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDDTRQVSIIRHEVCQPQHSGLVFCLLEWISCLNFVWFSLIFK
Disordered region (IsUnstruct)
*******************NLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY*********************************************************VSIIRHEVCQPQHSGLVFCLLEWISCLNFVWFSLIF*
Disordered Region (DISOPRED)
*****AS**IDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFR***************SSLCRVF**************************************************************LEWISCLNFVWFSLIFK
Disordered Region (DISEMBL)
********PIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKEN**********KGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY*********SLCRVFLSGKQSPNHEMQQKLFSANINNET*************DDTRQVSIIRHEVCQPQHSGLVFCLLEWISCLNFVWFSLIFK
Disordered Region (DISPRO)
******STPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGK********************************************************CLLEWISCLNFVWFSLIFK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDDTRQVSIIRHEVCQPQHSGLVFCLLEWISCLNFVWFSLIFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q84K00	567	NAC domain-containing pro	no	no	0.631	0.241	0.277	2e-11
Q8GY42	323	NAC transcription factor	no	no	0.635	0.427	0.281	4e-11
O49255	268	NAC transcription factor	no	no	0.612	0.496	0.294	1e-10
Q5Z6B6	276	NAC domain-containing pro	no	no	0.599	0.471	0.300	1e-10
Q9FLJ2	336	NAC domain-containing pro	no	no	0.631	0.407	0.278	2e-10
Q52QH4	318	NAC domain-containing pro	no	no	0.824	0.562	0.270	6e-10
Q93VY3	297	NAC domain-containing pro	no	no	0.603	0.441	0.308	6e-10
Q94F58	340	NAC domain-containing pro	no	no	0.658	0.420	0.285	8e-10
Q9FWX2	395	NAC domain-containing pro	no	no	0.594	0.326	0.273	2e-09
Q7GCL7	489	NAC domain-containing pro	no	no	0.520	0.231	0.276	2e-09

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 18/155 (11%)

Query: 14  FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV--------WYLVC--- 61
           F  TDE L    L+R +   P   + I+  + Y   P +LPD          WY      
Sbjct: 15  FHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLD 74

Query: 62  ------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEF 115
                 SK N + + G W+  G+  EI + S ++G + TL + +G+ P   +T+WVM E+
Sbjct: 75  KKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGERTNWVMHEY 134

Query: 116 RITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQ 150
           R++ + L      +++  LCR+F      P +  Q
Sbjct: 135 RLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQ 169

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 29/167 (17%)

Query: 1   MCPPTASTPIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGV--- 56
           + P     P    F  TDE L    L++     PLP ++I +++ Y   P  LP      
Sbjct: 9   IGPGHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFG 68

Query: 57  ---WYLVCSKE---------NTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVP 103
              WY    ++         N +A  G W+A G    IF+ NS+ +G +  L F+ G+ P
Sbjct: 69  EHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHKVGVKKALVFYGGKPP 128

Query: 104 NERKTDWVMQEFRITQKRLYGDKKEEDSSS------------LCRVF 138
              KTDW+M E+R+T   L    K  D ++            LCR++
Sbjct: 129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIY 175

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 6   ASTPIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WY 58
           ++ P    F  TDE L    L       P P ++I +V+ Y   P  LP+        WY
Sbjct: 7   STLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWY 66

Query: 59  LVCSKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTD 109
               +E         N +A  G W+A G    I S S  +G +  L F++G+ P   KTD
Sbjct: 67  FFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSNVGVKKALVFYKGRPPKGIKTD 126

Query: 110 WVMQEFRITQKRLYGDKKEE----DSSSLCRVF 138
           W+M E+R+   R    K+      D   LCR++
Sbjct: 127 WIMHEYRLHDSRKASTKRNGSMRLDEWVLCRIY 159

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z6B6|NAC76_ORYSJ NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 23/153 (15%)

Query: 7   STPIDVDFASTDENL-FGSLERMIRGSPLPCNVINDVNPYNHRPSNL---------PDGV 56
           S P    F  TDE L +  L + +    +  +VI +++     P +L         P   
Sbjct: 9   SVPPGFRFHPTDEELLYYYLRKKVAYEAIDLDVIREIDLNKLEPWDLKDRCRIGTGPQNE 68

Query: 57  WYLVCSKE---------NTSAQHGQWRAKGETCEIF-SNSYIIGWRTTLEFFEGQVPNER 106
           WY    K+         N +   G W+A G    IF +N+  IG R TL F+ G+ P+ +
Sbjct: 69  WYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIFLANACRIGMRKTLVFYVGRAPHGK 128

Query: 107 KTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFL 139
           KTDW+M E+R+ Q  +     +ED   +CRVF+
Sbjct: 129 KTDWIMHEYRLDQDNV---DVQEDGWVVCRVFM 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVC 61
           P    F  TDE L    L + +  +      I +V+     P  LP      +  WY  C
Sbjct: 17  PPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEWYFFC 76

Query: 62  SKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
            ++         N + + G W+A G+  EI+    ++G + TL F+ G+ P  +KT+WVM
Sbjct: 77  VRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKTNWVM 136

Query: 113 QEFRITQKRLYGD--KKEEDSSSLCRVF---LSGKQSP 145
            E+R+  K    +  K  ++   +CRVF     GK+ P
Sbjct: 137 HEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIP 174

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 24/203 (11%)

Query: 9   PIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYLVC 61
           P    F  TDE L    L R +   PLP  +I +V+ Y   P +LP+        WY   
Sbjct: 22  PPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWYFFT 81

Query: 62  ---------SKENTSAQHGQWRAKGETCEIF--SNSYIIGWRTTLEFFEGQVPNERKTDW 110
                    S+ N +A  G W+A G    +    ++  +G +  L F+ G+ P   KTDW
Sbjct: 82  PRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRGVKTDW 141

Query: 111 VMQEFRITQK-RLYGDKKEE---DSSSLCRVFLSGKQSPNHEMQQKLFS--ANINNETHS 164
           +M E+R+    R  G KK     D   LCR++         +++Q+  +  A      H 
Sbjct: 142 IMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKLEQQDVASVAAAAPRNHH 201

Query: 165 HSTELSFDKDKDDTRQVSIIRHE 187
           H      D    DT   S   H+
Sbjct: 202 HQNGEVMDAAAADTMSDSFQTHD 224

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 18/149 (12%)

Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R + G      VI D++ Y   P +LP         WY 
Sbjct: 13  SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFGEKEWYF 72

Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I ++   +G +  L F+ G+ P   KT+W
Sbjct: 73  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKTNW 132

Query: 111 VMQEFR-ITQKRLYGDKKEEDSSSLCRVF 138
           +M E+R I   R +G  K +D   LCR++
Sbjct: 133 IMHEYRLIEHSRSHGSSKLDD-WVLCRIY 160

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F58|NAC89_ARATH NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 25/168 (14%)

Query: 14  FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD-------GVWYLVC---- 61
           F+ TD  L    L+R + G      VI D+  YN  P +LPD         W+  C    
Sbjct: 27  FSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSEWFFFCARGK 86

Query: 62  -----SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFR 116
                S+   + + G W+A G+  ++ S S +IG + TL F  G+ P   +TDW+M E+ 
Sbjct: 87  KYPHGSQNRRATKMGYWKATGKERDVKSGSEVIGTKRTLVFHIGRAPKGERTDWIMHEYC 146

Query: 117 ITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHS 164
           +    L      +D+  +CRV     +  N    QK    N + E H+
Sbjct: 147 VKGVSL------DDAMVVCRV--RRNKEYNSGTSQKAPKPNSSAEKHA 186

Transcription factor involved in plant cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 66/150 (44%), Gaps = 21/150 (14%)

Query: 8   TPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD---------GVW 57
            P    F  TDE L    L + +    +  + I D++ Y   P +L +           W
Sbjct: 7   VPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDW 66

Query: 58  YLVCSKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKT 108
           Y    K+         N + + G W+A G    I+    +IG R TL F++G+ PN +K+
Sbjct: 67  YFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQKS 126

Query: 109 DWVMQEFRITQKRLYGDKKEEDSSSLCRVF 138
           DW+M E+R+          +E+   +CRVF
Sbjct: 127 DWIMHEYRLETDE--NGTPQEEGWVVCRVF 154

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 25  LERMIRGSPLPCNVINDVNPYNHRPSNLP--------DGVWYLVC---------SKENTS 67
           L++ I G  +   +I +V+ Y H P +LP        D  W+            S+ N +
Sbjct: 27  LKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDVPTQDNKWHFFAARDRKYPNGSRSNRA 86

Query: 68  AQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKK 127
              G W++ G+   I      IG + TL F EG+ P  R+T+W+M E+ I ++       
Sbjct: 87  TVAGYWKSTGKDRAIKMGKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYIDERECQACPD 146

Query: 128 EEDSSSLCRV 137
            +D+  LCR+
Sbjct: 147 MKDAYVLCRI 156

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255538558	388	conserved hypothetical protein [Ricinus	0.903	0.505	0.507	1e-47
118485763	415	unknown [Populus trichocarpa]	0.852	0.445	0.472	1e-45
224136574	385	NAC domain protein, IPR003441 [Populus t	0.852	0.480	0.472	1e-45
302398995	359	NAC domain class transcription factor [M	0.751	0.454	0.520	7e-39
225458374	383	PREDICTED: uncharacterized protein LOC10	0.847	0.480	0.486	2e-38
302142444	355	unnamed protein product [Vitis vinifera]	0.626	0.383	0.562	2e-34
449470009	199	PREDICTED: uncharacterized protein LOC10	0.686	0.748	0.430	3e-29
414864424	664	TPA: putative NAC domain transcription f	0.806	0.263	0.282	6e-13
357168397	390	PREDICTED: NAC domain-containing protein	0.617	0.343	0.298	7e-13
225466227	668	PREDICTED: uncharacterized protein LOC10	0.769	0.25	0.288	1e-12

>gi|255538558|ref|XP_002510344.1| conserved hypothetical protein [Ricinus communis] gi|223551045|gb|EEF52531.1| conserved hypothetical protein [Ricinus communis]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/197 (50%), Positives = 130/197 (65%), Gaps = 1/197 (0%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           M PP    P D+   ST E LF SLE+M  G PLP NVI DVNPYN+ PS LP G+WYL+
Sbjct: 1   MYPPPNPVP-DIGLNSTAEELFISLEKMAHGYPLPNNVITDVNPYNYSPSYLPQGIWYLI 59

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
            SKEN +   G W+ KGE  ++FS SYI GW TTLEFFEGQVP ERKT+W MQE+ ITQK
Sbjct: 60  RSKENGATDLGFWKVKGEASKLFSTSYITGWMTTLEFFEGQVPRERKTNWQMQEYWITQK 119

Query: 121 RLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDDTRQ 180
               + K++++SSLCRVFL G+Q  +++ +Q++ S +I + T  HSTE    K  + T  
Sbjct: 120 GPGENSKKKETSSLCRVFLGGEQGLDYQKRQEMASLHIADHTLVHSTESIVLKANNGTSN 179

Query: 181 VSIIRHEVCQPQHSGLV 197
            S  +H V +   +G+V
Sbjct: 180 GSTSKHVVDKDDETGVV 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485763|gb|ABK94731.1| unknown [Populus trichocarpa]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 14/199 (7%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           MCPP +S   D+DF   DE LF  L ++  GSPLP NVI DVNPY + PSNLP+ +WYL+
Sbjct: 31  MCPPASSPVADIDFHCRDEELFMFLYKLTSGSPLPGNVITDVNPYIYAPSNLPEDIWYLL 90

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             KEN     G W+ KGE C++FSNS I GWRTT EFFEGQVP+ERKTDW+MQE+ ITQK
Sbjct: 91  RVKENDDTGLGFWKVKGEACKLFSNSAITGWRTTFEFFEGQVPHERKTDWLMQEYWITQK 150

Query: 121 RLYGDKKEEDSSSLCRVFLSGKQSPNHEMQ--------------QKLFSANINNETHSHS 166
                +K +++ SLCRVFL G+Q+ +HE Q              Q +    + + +H  S
Sbjct: 151 EHIEKRKAKEARSLCRVFLGGEQALDHENQLIASPHSDTHIDLTQSIGPGTLADTSHGSS 210

Query: 167 TELSFDKDKDDTRQVSIIR 185
           +    +KD +    V+  R
Sbjct: 211 SNPEVNKDDETENMVATGR 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136574|ref|XP_002326894.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222835209|gb|EEE73644.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/199 (47%), Positives = 123/199 (61%), Gaps = 14/199 (7%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           MCPP +S   D+DF   DE LF  L ++  GSPLP NVI DVNPY + PSNLP+ +WYL+
Sbjct: 1   MCPPASSPVADIDFHCRDEELFMFLYKLTSGSPLPGNVITDVNPYIYAPSNLPEDIWYLL 60

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
             KEN     G W+ KGE C++FSNS I GWRTT EFFEGQVP+ERKTDW+MQE+ ITQK
Sbjct: 61  RVKENDDTGLGFWKVKGEACKLFSNSAITGWRTTFEFFEGQVPHERKTDWLMQEYWITQK 120

Query: 121 RLYGDKKEEDSSSLCRVFLSGKQSPNHEMQ--------------QKLFSANINNETHSHS 166
                +K +++ SLCRVFL G+Q+ +HE Q              Q +    + + +H  S
Sbjct: 121 EHIEKRKAKEARSLCRVFLGGEQALDHENQLIASPHSDTHIDLTQSIGPGTLADTSHGSS 180

Query: 167 TELSFDKDKDDTRQVSIIR 185
           +    +KD +    V+  R
Sbjct: 181 SNPEVNKDDETENMVATGR 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398995|gb|ADL36792.1| NAC domain class transcription factor [Malus x domestica]

 Score =  166 bits (420), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 89/171 (52%), Positives = 108/171 (63%), Gaps = 8/171 (4%)

Query: 1   MCPPTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLV 60
           M P +A+ P D+    TDE L  SLE++  GSPLP NVI DVNPY   PSNLPDG WY +
Sbjct: 1   MYPQSAALPADISLQCTDEELCVSLEKIQDGSPLPGNVIRDVNPYRCAPSNLPDGFWYFI 60

Query: 61  CSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
            S E+     GQWRAKGE   IFSNS I GWR TLEF+ GQ P+E KT+WVMQE+ ITQK
Sbjct: 61  RSSESNPTNIGQWRAKGEASRIFSNSSIYGWRATLEFYRGQAPHETKTNWVMQEYWITQK 120

Query: 121 RLYGDKKE----EDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHST 167
           +     K     +D  SLCRVFL   ++PN    Q+L    +N++   HST
Sbjct: 121 KSSESSKLKINVQDVGSLCRVFLRDDETPNSNKLQEL----VNSDRAIHST 167

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458374|ref|XP_002283395.1| PREDICTED: uncharacterized protein LOC100252228 [Vitis vinifera]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/185 (48%), Positives = 114/185 (61%), Gaps = 1/185 (0%)

Query: 4   PTASTPIDVDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSK 63
           P+ S P ++    +DE LF  L+ MI GSPLP NV+ +VNPY H PS L D  WYL  S 
Sbjct: 5   PSVSPPNEISLYWSDEELFTCLQGMINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSS- 63

Query: 64  ENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLY 123
           E+T    G W+ KGE  EIFSNS I GWRTT EF+EG  P+  KTDWV+Q+++ITQK   
Sbjct: 64  EDTKFAEGFWKPKGEPYEIFSNSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQKGQS 123

Query: 124 GDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDDTRQVSI 183
            + K   SSSLCRVF S  QS +HEMQ++L  AN+ +E H+ S         + T Q S 
Sbjct: 124 KNIKPMASSSLCRVFQSRGQSSSHEMQKELGVANVADENHTCSKPSVVSNTDNSTGQGSK 183

Query: 184 IRHEV 188
              +V
Sbjct: 184 SESQV 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142444|emb|CBI19647.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 94/137 (68%), Gaps = 1/137 (0%)

Query: 28  MIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSY 87
           MI GSPLP NV+ +VNPY H PS L D  WYL  S E+T    G W+ KGE  EIFSNS 
Sbjct: 1   MINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSS-EDTKFAEGFWKPKGEPYEIFSNSS 59

Query: 88  IIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNH 147
           I GWRTT EF+EG  P+  KTDWV+Q+++ITQK    + K   SSSLCRVF S  QS +H
Sbjct: 60  ITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQKGQSKNIKPMASSSLCRVFQSRGQSSSH 119

Query: 148 EMQQKLFSANINNETHS 164
           EMQ++L  AN+ +E H+
Sbjct: 120 EMQKELGVANVADENHT 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470009|ref|XP_004152711.1| PREDICTED: uncharacterized protein LOC101220327 [Cucumis sativus]

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 95/151 (62%), Gaps = 2/151 (1%)

Query: 12  VDFASTDENLFGSLERMIRGSPLPCNVINDVNPYNHRPSNLPDGVWYLVCSKENTSAQHG 71
           +D  S+DE  F  L+R+ RG PLP NV+ D+NPY   P  LPDGVW+ V S  N  +   
Sbjct: 14  LDLFSSDEETFLELKRISRGGPLPANVL-DINPYGCNPKMLPDGVWFYVVSHGNADSSFS 72

Query: 72  QWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDS 131
            W+ K    ++FS+S   GWRTT E++EGQ P E KT W+MQ++ ++Q  L  + K++++
Sbjct: 73  PWKLKSGAWKLFSDSSFTGWRTTYEYYEGQAPYECKTAWIMQKYWMSQTDLSENSKQKET 132

Query: 132 SSLCRVFLSGKQSPNHEMQQKL-FSANINNE 161
            SLC++FL  +Q  NHE   K+  S  +N+E
Sbjct: 133 ISLCKIFLGDEQFQNHENTLKIDLSITLNSE 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414864424|tpg|DAA42981.1| TPA: putative NAC domain transcription factor superfamily protein [Zea mays]

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 30/205 (14%)

Query: 1   MCPPTASTPIDVDFASTDENLF-GSLERMIRGSPLPCNVINDVNPYNHRPSNLP------ 53
           M P   S P    F  TDE L    L+R I G  +   +I +V+ Y   P +LP      
Sbjct: 1   MAP--VSLPPGFRFHPTDEELIIYYLKRKINGRQIELEIIPEVDLYKCEPWDLPEKSFLP 58

Query: 54  --DGVWYLVC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQV 102
             D  WY            S+ N + + G W+A G+  ++ S+   +G + TL ++ G+ 
Sbjct: 59  SKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSHRRAVGMKKTLVYYRGRA 118

Query: 103 PNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSP---------NHEMQQKL 153
           P+  +TDWVM E+R+ ++    D   +D+ +LCRVF      P         +H ++   
Sbjct: 119 PHGSRTDWVMHEYRLDERECETDTGLQDAYALCRVFKKTAPGPKIIEHYGAVHHPIEHPQ 178

Query: 154 FSANINN-ETHSHSTELSFDKDKDD 177
           + A   + + HS + +LS D   DD
Sbjct: 179 WMAEAGSVDRHSPTLDLSSDARGDD 203

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357168397|ref|XP_003581627.1| PREDICTED: NAC domain-containing protein 78-like [Brachypodium distachyon]

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 25  LERMIRGSPLPCNVINDVNPYNHRPSNLP--------DGVWYLVC---------SKENTS 67
           L+R + G PL CN + D++ Y   P  LP        D  WY  C         S+ N S
Sbjct: 23  LKRKLLGRPLRCNAVTDIDLYKFAPWELPEKASLQTGDREWYFFCMRDRKYSSGSRTNRS 82

Query: 68  AQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKK 127
            + G W+A G+   +   +  +G + TL F  G+ P   +TDWVM E+R+  K +     
Sbjct: 83  TEAGYWKATGKDRAVIHKNQTVGMKRTLVFHSGKPPQGTRTDWVMYEYRLVDKDISSSDV 142

Query: 128 EEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNE 161
           + D+  LC++F      P    Q   + A  N E
Sbjct: 143 KLDNCVLCKIFKKSGAGPKIGEQ---YGAPFNEE 173

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466227|ref|XP_002267333.1| PREDICTED: uncharacterized protein LOC100258199 [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 20/187 (10%)

Query: 1   MCPPTASTPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------ 53
           M P   S P    F  TDE L    L+R I G  +   +I +V+ Y   P +LP      
Sbjct: 1   MAP--VSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLP 58

Query: 54  --DGVWYLVC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQV 102
             D  WY            S+ N + + G W+A G+  ++ S    +G + TL ++ G+ 
Sbjct: 59  SKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNSQRRAVGMKKTLVYYRGRA 118

Query: 103 PNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNET 162
           P+  +TDWVM E+R+ ++        +D+ +LCRVF      P         + N  +  
Sbjct: 119 PHGARTDWVMHEYRLDERECEIVSGLQDAYALCRVFKKTASGPKIGEHYATTTTNQMSSD 178

Query: 163 HSHSTEL 169
           HS S EL
Sbjct: 179 HSSSMEL 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.506	0.174	0.313	1.3e-14
TAIR|locus:2075815	549	NAC053 "AT3G10500" [Arabidopsi	0.520	0.205	0.284	1.4e-14
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.741	0.600	0.292	3e-14
TAIR|locus:2122219	377	NAC076 "NAC domain containing	0.672	0.387	0.238	6.6e-12
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.769	0.662	0.252	1.1e-11
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.543	0.392	0.274	3.8e-11
TAIR|locus:2037920	652	NAC014 "NAC 014" [Arabidopsis	0.391	0.130	0.356	1e-10
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.396	0.235	0.287	1.1e-10
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.714	0.530	0.255	1.2e-10
TAIR|locus:2045570	275	NAC042 "NAC domain containing	0.811	0.64	0.252	2.1e-10

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 36/115 (31%), Positives = 63/115 (54%)

Query:    62 SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKR 121
             S+ N + + G W+A G+  ++ S+S ++G + TL ++ G+ P+  +TDWVM E+R+ ++ 
Sbjct:    78 SRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVYYRGRAPHGSRTDWVMHEYRLEEQE 137

Query:   122 LYGDKKEEDSSSLCRVF----LSGKQSPNHEMQQKLFSANINNETHSHSTELSFD 172
                    +D+ +LCRVF    L+ K    H   +K      N+E  + ST L  D
Sbjct:   138 CDSKSGIQDAYALCRVFKKSALANKIEEQHHGTKKN-KGTTNSEQSTSSTCLYSD 191

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075815 NAC053 "AT3G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 33/116 (28%), Positives = 59/116 (50%)

Query:    62 SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKR 121
             SK N + + G W+  G+  EI + S ++G + TL + +G+ P   +T+WVM E+R+  + 
Sbjct:    81 SKTNRATEMGYWKTTGKDREILNGSKVVGMKKTLVYHKGRAPRGERTNWVMHEYRLVDQD 140

Query:   122 LYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDD 177
             L      +D+  LCR+F      P +  Q   + A    E      +++F  D++D
Sbjct:   141 LDKTGVHQDAFVLCRIFQKSGSGPKNGEQ---YGAPFVEEEWEEEDDMTFVPDQED 193

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009819 "drought recovery" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 53/181 (29%), Positives = 87/181 (48%)

Query:    14 FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP---DGVWYLVCSKE----- 64
             F  TDE L    L R + G PLP +VI + +     P +LP   +   Y   ++E     
Sbjct:    21 FHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDLPGDCESEMYFFSTREAKYPN 80

Query:    65 ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRIT-- 118
                 N S   G W+A G   +I     ++G + TL F++G+ PN  +T+WV+ E+R+   
Sbjct:    81 GNRSNRSTGSGYWKATGLDKQIGKKKLVVGMKKTLVFYKGKPPNGTRTNWVLHEYRLVDS 140

Query:   119 -QKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDKDD 177
              Q  LYG      +  LCRVFL  K+S ++  +++     + NE  + +     +++K  
Sbjct:   141 QQDSLYGQNM---NWVLCRVFLK-KRSNSNSKRKEDEKEEVENEKETETEREREEENKKS 196

Query:   178 T 178
             T
Sbjct:   197 T 197

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2122219 NAC076 "NAC domain containing protein 76" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
 Identities = 38/159 (23%), Positives = 71/159 (44%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++H+    P G      ++ N +   G W+A G    ++  S +IG R TL F++G+ PN
Sbjct:    72 FSHKDKKYPTG------TRTNRATMAGFWKATGRDKAVYDKSKLIGMRKTLVFYKGRAPN 125

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVF----LSGKQSPNHEMQQKLFSANINN 160
              +KTDW+M E+R+          +E+   +CR F    ++G+           F   + +
Sbjct:   126 GQKTDWIMHEYRLESDE--NAPPQEEGWVVCRAFKKKPMTGQAKNTETWSSSYFYDELPS 183

Query:   161 ETHSHSTELSF-DKDKDDTRQVSIIRHEVCQPQHSGLVF 198
                S +  L++  K K +     ++  +  +    GL F
Sbjct:   184 GVRSVTEPLNYVSKQKQNVFAQDLMFKQELEGSDIGLNF 222

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 47/186 (25%), Positives = 88/186 (47%)

Query:    14 FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGVW---YLVCSKE----- 64
             F  TDE L    L+R +  SPLP ++I + +     P +LP  +    Y   ++E     
Sbjct:    20 FHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLPGNLEKERYFFSTREAKYPN 79

Query:    65 ----NTSAQHGQWRAKGETCEIFSN--SYIIGWRTTLEFFEGQVPNERKTDWVMQEFRIT 118
                 N +   G W+A G    + ++  + I+G + TL F++G+ P+  +TDW+M E+R++
Sbjct:    80 GNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRLS 139

Query:   119 QKRLYGDKKEEDSSSLCRVFL---SGKQSPNHEMQQKLFSANINNETHSHSTELSFDKDK 175
                         +  LCR+FL   +G ++ + +   +    N NN +      ++ D+  
Sbjct:   140 SSPP-SSMGPTQNWVLCRIFLKKRAGNKNDDDDGDSRNLRHNNNNNSSDQIEIITTDQTD 198

Query:   176 DDTRQV 181
             D T+ +
Sbjct:   199 DKTKPI 204

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
 Identities = 36/131 (27%), Positives = 64/131 (48%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             Y+ R    P+G      S+ N + + G W+A G+   + S    +G + TL ++ G+ P+
Sbjct:    67 YSTRDKKYPNG------SRTNRATRAGYWKATGKDRTVESKKMKMGMKKTLVYYRGRAPH 120

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSANINNETHS 164
               +T+WVM E+R+T          ++S +LCRVF    Q P  + +++        E+ S
Sbjct:   121 GLRTNWVMHEYRLTHAP---SSSLKESYALCRVFKKNIQIPKRKGEEE----EAEEESTS 173

Query:   165 HSTELSFDKDK 175
                E   +K+K
Sbjct:   174 VGKEEEEEKEK 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2037920 NAC014 "NAC 014" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 31/87 (35%), Positives = 45/87 (51%)

Query:    63 KENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRL 122
             + N +   G W+A G+   I S   IIG + TL F+ G+ P   +T+W+M E+R T K L
Sbjct:    97 RSNRATDIGYWKATGKDRTIKSKKMIIGMKKTLVFYRGRAPRGERTNWIMHEYRATDKEL 156

Query:   123 YGDKKEEDSSSLCRVFLSGKQS--PNH 147
              G    ++   LCR+F     S  P H
Sbjct:   157 DGTGPGQNPYVLCRLFHKPSDSCDPAH 183

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 27/94 (28%), Positives = 49/94 (52%)

Query:    45 YNHRPSNLPDGVWYLVCSKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPN 104
             ++H+    P G      ++ N +   G W+A G    ++  + +IG R TL F++G+ PN
Sbjct:    71 FSHKDKKYPTG------TRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPN 124

Query:   105 ERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVF 138
              +K+DW+M E+R+          +E+   +CR F
Sbjct:   125 GKKSDWIMHEYRLESDE--NAPPQEEGWVVCRAF 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 43/168 (25%), Positives = 77/168 (45%)

Query:    50 SNLP--DGVWYLVCSKE---------NTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEF 97
             S LP  D  WY  CS++         N   + G W+A G+  +I S +S IIG+R TL F
Sbjct:    55 SFLPNRDMEWYFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKITSRSSSIIGYRKTLVF 114

Query:    98 FEGQVPNERKTDWVMQEFRITQKRL-YGDKKEEDSSSLCRVFLSGKQSPNHEMQQKLFSA 156
             ++G+ P   +++W+M E+R+       G +  + +  LCRV +  +   N ++++     
Sbjct:   115 YKGRAPLGDRSNWIMHEYRLCDDDTSQGSQNLKGAFVLCRVAMKNEIKTNTKIRKIPSEQ 174

Query:   157 NINNETHSHSTELSFDKDKDDTRQVSIIRHEVCQPQHSGLVFCLLEWI 204
              I +   S  +       +D+T       + V     S  ++   E+I
Sbjct:   175 TIGSGESSGLSSRVTSPSRDETMPFHSFANPVSTETDSSNIWISPEFI 222

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2045570 NAC042 "NAC domain containing protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 50/198 (25%), Positives = 85/198 (42%)

Query:    14 FASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSK--- 63
             F  TDE L G  L R +    +   +I  ++ Y + P +LP      +  WY  C +   
Sbjct:    24 FHPTDEELLGYYLRRKVENKTIKLELIKQIDIYKYDPWDLPRVSSVGEKEWYFFCMRGRK 83

Query:    64 ------ENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                    N     G W+A G    ++SN   +G + +L ++ G      KTDW+M EFR+
Sbjct:    84 YRNSVRPNRVTGSGFWKATGIDKPVYSNLDCVGLKKSLVYYLGSAGKGTKTDWMMHEFRL 143

Query:   118 -TQKRLYGDKKEEDSSSLCRVF--LSGKQSPNHEMQQKLFSANINNETHSHSTELSFDKD 174
              +  +     ++ +  +LCR+F  ++ +++P      +     +   T + S   S D D
Sbjct:   144 PSTTKTDSPAQQAEVWTLCRIFKRVTSQRNPTILPPNR---KPVITLTDTCSKTSSLDSD 200

Query:   175 KDDTRQVSIIRHEVCQPQ 192
                 R V  + HE   PQ
Sbjct:   201 HTSHRTVDSMSHEPPLPQ 218

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0005992 "trehalose biosynthetic process" evidence=IMP

GO:0006561 "proline biosynthetic process" evidence=IMP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:1900056 "negative regulation of leaf senescence" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC139 NAC domain protein, IPR003441 (254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	1e-21

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 85.7 bits (213), Expect = 1e-21
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 19/121 (15%)

Query: 17  TDENLFGS-LERMIRGSPLPC-NVINDVNPYNHRPSNLPDGV-------WYLVCSKE--- 64
           TDE L    L+R + G PLP  +VI +V+ Y   P +LPDG        WY    ++   
Sbjct: 10  TDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWYFFSPRDRKY 69

Query: 65  ------NTSAQHGQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRI 117
                 N +   G W+A G+   + S    ++G + TL F++G+ P   KTDWVM E+R+
Sbjct: 70  PNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKTDWVMHEYRL 129

Query: 118 T 118
            
Sbjct: 130 E 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=3.6e-41  Score=266.24  Aligned_cols=111  Identities=39%  Similarity=0.796  Sum_probs=92.9

Q ss_pred             CCCCeeecCCHHHHHH-HHHHHHcCCCCCC-CceeecCCCCCCCCCCC------CCeEEEeee---------ecCcccCC
Q 027859            8 TPIDVDFASTDENLFG-SLERMIRGSPLPC-NVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTSAQH   70 (217)
Q Consensus         8 LPpGfrF~PTDeELV~-YL~~Ki~g~plp~-~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~t~~   70 (217)
                      |||||||+|||+|||. ||++|+.|.+++. ++|+++|||++|||+|+      +.+||||++         |.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            8999999999999999 9999999999986 89999999999999999      679999999         45688999


Q ss_pred             ceEEecCcceeEee-CCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeC
Q 027859           71 GQWRAKGETCEIFS-NSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRIT  118 (217)
Q Consensus        71 G~Wk~~G~~k~I~~-~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~  118 (217)
                      |+||.+|+.++|.+ ++.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999999 6778999999999999888899999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-09
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		9e-09
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		1e-08

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 16/125 (12%)
Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYLVC 61
           P    F  TD+ L    L R   G  LP  +I +V+ Y   P +LP+        WY   
Sbjct: 16  PPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFT 75
Query: 62  ---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
                    S+ N +A +G W+A G    +      +G +  L F+ G+ P   KTDW+M
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIM 135
Query: 113 QEFRI 117
            E+R+
Sbjct: 136 HEYRL 140

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 16  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 75
Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 76  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 135
Query: 111 VMQEFRITQKRLYGDKKEEDSSSLCRVF 138
           +M E+R+ +        + D   LCR++
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIY 163

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 7   STPIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPDGV------WYL 59
           S P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY 
Sbjct: 19  SLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYF 78
Query: 60  VC---------SKENTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDW 110
                      S+ N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W
Sbjct: 79  FSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNW 138
Query: 111 VMQEFRITQKRLYGDKKEEDSSSLCRVF 138
           +M E+R+ +        + D   LCR++
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIY 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1ut7_A	171	No apical meristem protein; transcription regulati	2e-27
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	4e-25

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  101 bits (254), Expect = 2e-27
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 16/138 (11%)

Query: 17  TDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE----- 64
           TDE L    L R   G      +I +++ Y   P  LP      +  WY    ++     
Sbjct: 26  TDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPN 85

Query: 65  ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
               N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W+M E+R+ + 
Sbjct: 86  GSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEP 145

Query: 121 RLYGDKKEEDSSSLCRVF 138
                  + D   LCR++
Sbjct: 146 SRRNGSTKLDDWVLCRIY 163

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score = 95.9 bits (239), Expect = 4e-25
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 21/143 (14%)

Query: 17  TDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCSKE----- 64
           TD+ L    L R   G  LP  +I +V+ Y   P +LP         WY    ++     
Sbjct: 24  TDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPN 83

Query: 65  ----NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQK 120
               N +A +G W+A G    +      +G +  L F+ G+ P   KTDW+M E+R+   
Sbjct: 84  GSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA 143

Query: 121 RLYGDKK-----EEDSSSLCRVF 138
                         D   LCR++
Sbjct: 144 GRAAAGAKKGSLRLDDWVLCRLY 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1e-52  Score=347.78  Aligned_cols=138  Identities=29%  Similarity=0.587  Sum_probs=124.3

Q ss_pred             CCCCCCCeeecCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCeEEEeee---------ecCccc
Q 027859            5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTSA   68 (217)
Q Consensus         5 ~~~LPpGfrF~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~t   68 (217)
                      .+.|||||||+|||||||. ||++|+.|.++|.++|+++|||.+|||+||      +.+||||++         |.||++
T Consensus        12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~t   91 (174)
T 3ulx_A           12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAA   91 (174)
T ss_dssp             TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEEE
T ss_pred             ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceeec
Confidence            4689999999999999999 999999999999999999999999999999      578999998         568999


Q ss_pred             CCceEEecCcceeEeeCCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeCCccccC-----CCCCCCCeEEEEEEEcCC
Q 027859           69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYG-----DKKEEDSSSLCRVFLSGK  142 (217)
Q Consensus        69 ~~G~Wk~~G~~k~I~~~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~~~~~~~-----~~~~~~~~VLCrI~~k~~  142 (217)
                      ++||||++|++++|.+++.+||+||+|+||.|++|++.||+|+||||+|.+.....     .....++|||||||+|+.
T Consensus        92 ~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~  170 (174)
T 3ulx_A           92 GNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN  170 (174)
T ss_dssp             TTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred             CCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence            99999999999999988888999999999999999999999999999999865432     113468999999999975

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.1e-52  Score=346.97  Aligned_cols=139  Identities=28%  Similarity=0.543  Sum_probs=122.4

Q ss_pred             CCCCCCCeeecCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCeEEEeee---------ecCccc
Q 027859            5 TASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTSA   68 (217)
Q Consensus         5 ~~~LPpGfrF~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~t   68 (217)
                      ...|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+||      +++||||++         |.||++
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R~t   93 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRVA   93 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEEE
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccccC
Confidence            4689999999999999999 999999999999999999999999999998      679999998         578999


Q ss_pred             CCceEEecCcceeEeeCCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeCCccccCCCCCCCCeEEEEEEEcCCC
Q 027859           69 QHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSGKQ  143 (217)
Q Consensus        69 ~~G~Wk~~G~~k~I~~~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~~~~~~~~~~~~~~~VLCrI~~k~~~  143 (217)
                      ++||||++|++++|..++.+||+||+|+||.|++|++.||+|+||||+|.+..........++|||||||+|+..
T Consensus        94 ~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           94 GSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             TTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             CCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            999999999999999988889999999999999999999999999999998643222245689999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	5e-26

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 97.0 bits (241), Expect = 5e-26
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 9   PIDVDFASTDENLFGS-LERMIRGSPLPCNVINDVNPYNHRPSNLPD------GVWYLVC 61
           P    F  TDE L    L R   G      +I +++ Y   P  LP+        WY   
Sbjct: 18  PPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFS 77

Query: 62  SKE---------NTSAQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVM 112
            ++         N  A  G W+A G    I +    +G +  L F+ G+ P   KT+W+M
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 137

Query: 113 QEFRITQKRLYGDKKEEDSSSLCRVF 138
            E+R+ +        + D   LCR++
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVLCRIY 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.4e-51  Score=335.23  Aligned_cols=138  Identities=28%  Similarity=0.547  Sum_probs=122.0

Q ss_pred             CCCCCCCCeeecCCHHHHHH-HHHHHHcCCCCCCCceeecCCCCCCCCCCC------CCeEEEeee---------ecCcc
Q 027859            4 PTASTPIDVDFASTDENLFG-SLERMIRGSPLPCNVINDVNPYNHRPSNLP------DGVWYLVCS---------KENTS   67 (217)
Q Consensus         4 ~~~~LPpGfrF~PTDeELV~-YL~~Ki~g~plp~~~I~~vDvy~~~Pw~Lp------~~~wYFFs~---------R~~R~   67 (217)
                      .+++|||||||+|||||||. ||++|+.|.|++.++|+++|||.+|||+||      +++||||++         |.+|+
T Consensus        13 ~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCEE
T ss_pred             ccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccccc
Confidence            35799999999999999999 999999999999999999999999999998      678999998         56789


Q ss_pred             cCCceEEecCcceeEeeCCceeEEEEEeeeeeCCCCCCCCcCeEEEEEEeCCccccCCCCCCCCeEEEEEEEcC
Q 027859           68 AQHGQWRAKGETCEIFSNSYIIGWRTTLEFFEGQVPNERKTDWVMQEFRITQKRLYGDKKEEDSSSLCRVFLSG  141 (217)
Q Consensus        68 t~~G~Wk~~G~~k~I~~~~~~vG~Kktl~Fy~g~~~~g~kT~WvM~EY~l~~~~~~~~~~~~~~~VLCrI~~k~  141 (217)
                      +++|+||++|+++.|.+++.+||+||+|+||+++++++.+|+|+||||+|.+..........++|||||||+|+
T Consensus        93 ~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          93 AGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             ETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            99999999999999999888999999999999999999999999999999987554444567899999999985