Citrus Sinensis ID: 027887

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEccHHHHHHHHHHcccccEEEEEEEcccccEEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHccccEEEEEEcccccccccccEEEEEEccccccEEEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccHHHHHHHccccccccccccHHHHccccccccccccccccccccccccccccHHHEEEEEccccccccEEccHHHHHHcHHHHHHccHEEEEEEEEccccEEEEcccccccHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHccccEEEEcccccEEEcccEEEEEEccccccccEEEEEEEEEEccccccccEEEcccc
Coil and Loop (DISEMBL)
mqlqlrssssASALFSAvqvkppssppvrvkalftknpgsgtlknsnsntnpnpnpmasnprwaqktvtlpplrrgchlitPKIVKEIAQDLSEFKCGLAHLFLLHTSasltinenydsdvrddTETFLNkivpegrsaswkhtlegpddmpahikssmfgctltipitdgqlnmgtwqGMFTLTHNGLRVKELHGCMLLLTSLLtsadcvlhncli
Flexible Loop (DISEMBL)
MQLQLRSSSSASALFSavqvkppssppvrVKALFTknpgsgtlknsnsntnpnpnpmasnprWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNkivpegrsaswkhtlEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTslltsadcVLHNCLI
Low Complexity Region (SEG)
MqlqlrssssasalfsavqvkppssppvrvkALFTKNPGSGTLKnsnsntnpnpnpmasnpRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCLI
Disordered region (IsUnstruct)
****************************************************************QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP*******************HIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCL*
Disordered Region (DISOPRED)
*************LFSAVQVKPPSSPPVRV*********************************AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADC*LHNCLI
Disordered Region (DISEMBL)
**************************PVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCLI
Disordered Region (DISPRO)
***********************************************************NPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQLQLRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLLTSLLTSADCVLHNCLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
O14155	142	UPF0047 protein C4A8.02c	yes	no	0.525	0.802	0.504	6e-28
P0AF48	138	UPF0047 protein YjbQ OS=E	N/A	no	0.557	0.876	0.483	2e-27
P0AF49	138	UPF0047 protein YjbQ OS=E	N/A	no	0.557	0.876	0.483	2e-27
P0A2L1	138	UPF0047 protein YjbQ OS=S	yes	no	0.562	0.884	0.488	8e-22
P0A2L2	138	UPF0047 protein YjbQ OS=S	N/A	no	0.562	0.884	0.488	8e-22
P74125	147	UPF0047 protein sll1880 O	N/A	no	0.580	0.857	0.412	5e-19
Q58481	138	UPF0047 protein MJ1081 OS	yes	no	0.497	0.782	0.435	2e-17
O05243	132	UPF0047 protein YugU OS=B	yes	no	0.474	0.780	0.327	5e-10
O28229	126	UPF0047 protein AF_2050 O	yes	no	0.442	0.761	0.323	2e-08
O26865	143	UPF0047 protein MTH_771 O	yes	no	0.552	0.839	0.277	2e-07

>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1

 Score =  124 bits (310), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 85/117 (72%), Gaps = 3/117 (2%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +TL    +G ++IT  +VK++ + L  F  G  + F+ HTSA+LTINEN+D+D R D
Sbjct: 5   QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGM 181
               L+KIVPE  SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ +
Sbjct: 64  MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDI 118

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQG++
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118

Query: 183 TLTH 186
              H
Sbjct: 119 LGEH 122

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 3/124 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W QKT+TL    RG HL+T +I+ ++A D+     GL HL L HTSASLT+NEN D  VR
Sbjct: 2   WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
            D E F  + VP+  + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQG++
Sbjct: 61  HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118

Query: 183 TLTH 186
              H
Sbjct: 119 LGEH 122

Escherichia coli O157:H7 (taxid: 83334)

>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQG++
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118

Query: 183 TLTHN 187
              H 
Sbjct: 119 LGEHR 123

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
           W Q+T+TL    RG HLIT +I  +++  L   + GL HL LLHTSASLT+NEN D  VR
Sbjct: 2   WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
            D E    K VP+  +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQG++
Sbjct: 61  ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118

Query: 183 TLTHN 187
              H 
Sbjct: 119 LGEHR 123

Salmonella typhi (taxid: 90370)

>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1880 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 5/131 (3%)

Query: 58  ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
           A+  R  Q+ + +    +  H    KI + + Q  S  K GL  +F+ HTSASL I EN 
Sbjct: 5   AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62

Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           D DV  D   F  ++VPE GR   ++H+ EG DDMPAHI+S++   +  IPI +G+L +G
Sbjct: 63  DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120

Query: 177 TWQGMFTLTHN 187
           TWQG+F   H 
Sbjct: 121 TWQGVFLWEHR 131

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1081 PE=3 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 75/117 (64%), Gaps = 9/117 (7%)

Query: 80  ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
           ITP I+  I++  S+ K G+A +++ HT+A +TINEN D  V+ D   FL+ ++P+    
Sbjct: 23  ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76

Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELH 195
           +W  T LEG  D  AHIKSS+ GC+ TI I DG+  +GTWQG+F    +G R +E +
Sbjct: 77  NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEFDGPRRREFY 131

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3 SV=2

 Score = 64.7 bits (156), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 10/113 (8%)

Query: 84  IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
           I +E+   L E     G A ++  HT+A +TINEN D DV+ D     +++ P      W
Sbjct: 18  ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71

Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVK 192
           +H L+     +  AH+KSS  G +  + + +G+L +GTWQG++    +G R +
Sbjct: 72  EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEFDGPRTR 124

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2050 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 60/102 (58%), Gaps = 6/102 (5%)

Query: 94  EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH-TLEGPDDMP 152
           E + GL  ++  HT+ +L INE  +  + +D   F+ K+VP G+   +KH  L+   D  
Sbjct: 25  ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79

Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKEL 194
           AH+K+++ G ++ +P+  G+L +GTWQ +  L  +G R + +
Sbjct: 80  AHLKATLLGNSVVVPVESGKLALGTWQRILFLEFDGPRTRRV 121

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_771 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 68/126 (53%), Gaps = 6/126 (4%)

Query: 72  PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
           PLR  R   LI    +     + S  + G+ ++F  H+++++ INEN +S +  D E+ L
Sbjct: 15  PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73

Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGL 189
              VP    AS+ H     ++  +H+++ + G + T+P+ +G +++GTWQ +F    +G 
Sbjct: 74  EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAELDGP 130

Query: 190 RVKELH 195
           R + + 
Sbjct: 131 RNRRIR 136

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225457713	236	PREDICTED: uncharacterized protein LOC10	0.755	0.694	0.697	1e-62
449455657	185	PREDICTED: UPF0047 protein C4A8.02c-like	0.746	0.875	0.711	5e-62
255539386	195	conserved hypothetical protein [Ricinus	0.792	0.882	0.683	1e-61
224065613	163	predicted protein [Populus trichocarpa]	0.677	0.901	0.735	2e-61
118481865	147	unknown [Populus trichocarpa]	0.589	0.870	0.867	4e-61
449527653	162	PREDICTED: UPF0047 protein C4A8.02c-like	0.714	0.956	0.730	9e-61
297745635	148	unnamed protein product [Vitis vinifera]	0.585	0.858	0.858	1e-60
297845088	218	hypothetical protein ARALYDRAFT_472344 [	0.769	0.766	0.633	2e-60
356521568	175	PREDICTED: UPF0047 protein yjbQ-like [Gl	0.585	0.725	0.850	1e-59
357475211	173	hypothetical protein MTR_4g084120 [Medic	0.603	0.757	0.809	3e-59

>gi|225457713|ref|XP_002277414.1| PREDICTED: uncharacterized protein LOC100252976 isoform 1 [Vitis vinifera]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 136/172 (79%), Gaps = 8/172 (4%)

Query: 17  AVQVKPP-SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRR 75
           ++  KPP +S  +RVK+L+T         + N  T+         P+WAQKT+TLPP RR
Sbjct: 57  SLGAKPPLTSHQIRVKSLYTPT-------SFNDPTDSTSMAAIPAPKWAQKTITLPPQRR 109

Query: 76  GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPE 135
           GCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSDVRDDTETFL+KIVPE
Sbjct: 110 GCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSDVRDDTETFLSKIVPE 169

Query: 136 GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHN 187
           GRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQG++   H 
Sbjct: 170 GRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQGIWLCEHR 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455657|ref|XP_004145568.1| PREDICTED: UPF0047 protein C4A8.02c-like isoform 1 [Cucumis sativus]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 116/163 (71%), Positives = 136/163 (83%), Gaps = 1/163 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTH 186
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQG++   H
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQGIWLCEH 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539386|ref|XP_002510758.1| conserved hypothetical protein [Ricinus communis] gi|223551459|gb|EEF52945.1| conserved hypothetical protein [Ricinus communis]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/183 (68%), Positives = 139/183 (75%), Gaps = 11/183 (6%)

Query: 9   SSASALFSAVQVKP----PSSPPV-RVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRW 63
           +SA   FS+   KP     S+ PV RV +L+T  P S T  ++NS          S  +W
Sbjct: 3   ASAHLWFSSSAPKPVWLSASAAPVPRVNSLYTAKPSSLTNDSNNSMAT------TSTSKW 56

Query: 64  AQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
           AQKTVTL P RRGCHLIT KI+ EI  DLSEFKCGLAHLF+ HTSASLTINENYDSDVRD
Sbjct: 57  AQKTVTLSPHRRGCHLITSKILNEIGSDLSEFKCGLAHLFIQHTSASLTINENYDSDVRD 116

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFT 183
           DTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC LTIPIT+G+LNMGTWQG++ 
Sbjct: 117 DTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCQLTIPITNGKLNMGTWQGIWL 176

Query: 184 LTH 186
             H
Sbjct: 177 CEH 179

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065613|ref|XP_002301884.1| predicted protein [Populus trichocarpa] gi|222843610|gb|EEE81157.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 130/159 (81%), Gaps = 12/159 (7%)

Query: 28  VRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPKIVKE 87
           +RV +L+T  P   +  +S +          S P+WAQKT+TLPP RRGCHLITPKI+ E
Sbjct: 1   LRVSSLYTAKP---SFSDSMA---------TSAPKWAQKTITLPPHRRGCHLITPKILNE 48

Query: 88  IAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEG 147
           I  DLSEFKCGLAHLFL HTSASLTINENYDSDVRDDTETFLNKIVPEGRSA WKHTLEG
Sbjct: 49  IGSDLSEFKCGLAHLFLHHTSASLTINENYDSDVRDDTETFLNKIVPEGRSAPWKHTLEG 108

Query: 148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTH 186
           PDDMPAHIKSSMFGC+LTIPITDG+LNMGTWQG++   H
Sbjct: 109 PDDMPAHIKSSMFGCSLTIPITDGKLNMGTWQGIWLCEH 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481865|gb|ABK92869.1| unknown [Populus trichocarpa]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/128 (86%), Positives = 118/128 (92%)

Query: 59  SNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           S P+WAQKT+TLPP RRGCHLITPKI+ EI  DLSEFKCGLAHLFL HTSASLTINENYD
Sbjct: 4   SAPKWAQKTITLPPHRRGCHLITPKILNEIGSDLSEFKCGLAHLFLHHTSASLTINENYD 63

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
           SDVRDDTETFLNKIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDG+LNMGTW
Sbjct: 64  SDVRDDTETFLNKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGKLNMGTW 123

Query: 179 QGMFTLTH 186
           QG++   H
Sbjct: 124 QGIWLCEH 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527653|ref|XP_004170824.1| PREDICTED: UPF0047 protein C4A8.02c-like, partial [Cucumis sativus]

 Score =  238 bits (608), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 114/156 (73%), Positives = 132/156 (84%), Gaps = 1/156 (0%)

Query: 24  SSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWAQKTVTLPPLRRGCHLITPK 83
           ++ P+RVK L + N  +G    +  ++NP+    A+ P+WAQKTVTL P RRGCHLITPK
Sbjct: 8   AAQPLRVKLLRSNNSSTGNPSATAGSSNPS-FMAAAGPKWAQKTVTLSPHRRGCHLITPK 66

Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I+KEI QDLSEFKCGLAH+FL HTSASLTINENYDSDV++DTETFLNKIVPEG SA WKH
Sbjct: 67  IMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPEGTSAPWKH 126

Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
           TLEGPDDMPAHIKSS+FGC LTIPIT+G+LNMGTWQ
Sbjct: 127 TLEGPDDMPAHIKSSLFGCALTIPITNGKLNMGTWQ 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745635|emb|CBI40800.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/127 (85%), Positives = 117/127 (92%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKT+TLPP RRGCH ITPKI+KEI QDLS FKCGLAHLF+ HTSASLTINENYDSD
Sbjct: 7   PKWAQKTITLPPQRRGCHHITPKILKEIGQDLSGFKCGLAHLFIQHTSASLTINENYDSD 66

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           VRDDTETFL+KIVPEGRSA WKHTLEGPDDMPAHIKSSMFGC+LTIPITDGQLNMGTWQG
Sbjct: 67  VRDDTETFLSKIVPEGRSAPWKHTLEGPDDMPAHIKSSMFGCSLTIPITDGQLNMGTWQG 126

Query: 181 MFTLTHN 187
           ++   H 
Sbjct: 127 IWLCEHR 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845088|ref|XP_002890425.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata] gi|297336267|gb|EFH66684.1| hypothetical protein ARALYDRAFT_472344 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/183 (63%), Positives = 138/183 (75%), Gaps = 16/183 (8%)

Query: 5   LRSSSSASALFSAVQVKPPSSPPVRVKALFTKNPGSGTLKNSNSNTNPNPNPMASNPRWA 64
           L++  S++ LFS V        P+RV+++ T          +N  T+      +S P+WA
Sbjct: 37  LKAMQSSTILFSGVV-------PLRVRSVLTP---------ANPATDRASMASSSGPKWA 80

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           QKT+TLPPLRRGCHLITPKIVKEI QDLS+F CGLAH+FL HTSASLTINENYD DV+ D
Sbjct: 81  QKTITLPPLRRGCHLITPKIVKEIGQDLSDFNCGLAHVFLQHTSASLTINENYDPDVQAD 140

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTL 184
           TETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+LNMGTWQG++  
Sbjct: 141 TETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLNMGTWQGIWLC 200

Query: 185 THN 187
            H 
Sbjct: 201 EHR 203

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521568|ref|XP_003529426.1| PREDICTED: UPF0047 protein yjbQ-like [Glycine max]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/127 (85%), Positives = 117/127 (92%)

Query: 61  PRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           P+WAQKTV+LPPLRRGCHL+T KIVKEI QDLS FKCGLAHLFL HTSASLTINENYDSD
Sbjct: 34  PKWAQKTVSLPPLRRGCHLVTSKIVKEIEQDLSGFKCGLAHLFLQHTSASLTINENYDSD 93

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           VR+DTETFLN+IVPEG SA WKHTLEGPDDMPAHIKSSMFGCTLTIPIT+G+LNMGTWQG
Sbjct: 94  VREDTETFLNRIVPEGSSAPWKHTLEGPDDMPAHIKSSMFGCTLTIPITNGKLNMGTWQG 153

Query: 181 MFTLTHN 187
           ++   H 
Sbjct: 154 IWLCEHR 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475211|ref|XP_003607891.1| hypothetical protein MTR_4g084120 [Medicago truncatula] gi|85719357|gb|ABC75362.1| Protein of unknown function UPF0047 [Medicago truncatula] gi|355508946|gb|AES90088.1| hypothetical protein MTR_4g084120 [Medicago truncatula]

 Score =  233 bits (595), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 116/131 (88%)

Query: 57  MASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINEN 116
           MA+ P+WAQKT+ LPP +RGCHL+TPKI KEI QDLS FKCGLAHLFL HTSASLTINEN
Sbjct: 28  MATAPKWAQKTIALPPYKRGCHLVTPKIAKEIEQDLSGFKCGLAHLFLQHTSASLTINEN 87

Query: 117 YDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
           YD+DVRDDTETFLN+IVPEG SA WKHTLEG DDMPAHIKSSMFGC LTIPITDG+LNMG
Sbjct: 88  YDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITDGKLNMG 147

Query: 177 TWQGMFTLTHN 187
           TWQG++   H 
Sbjct: 148 TWQGIWLCEHR 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:505006137	217	AT1G21065 "AT1G21065" [Arabido	0.576	0.576	0.792	4.3e-54
FB|FBgn0263355	687	CG31688 [Drosophila melanogast	0.608	0.192	0.514	3.3e-33
UNIPROTKB|Q60BB8	139	MCA0559 "Putative uncharacteri	0.608	0.949	0.503	1.6e-31
UNIPROTKB|Q47W13	139	CPS_4360 "Putative uncharacter	0.562	0.877	0.491	3.8e-30
TIGR_CMR|CPS_4360	139	CPS_4360 "conserved hypothetic	0.562	0.877	0.491	3.8e-30
UNIPROTKB|Q9KUY5	139	VC_0373 "Putative uncharacteri	0.580	0.906	0.503	1.3e-29
TIGR_CMR|VC_0373	139	VC_0373 "conserved hypothetica	0.580	0.906	0.503	1.3e-29
UNIPROTKB|G4MUS6	210	MGG_01675 "Uncharacterized pro	0.695	0.719	0.433	4.4e-29
ASPGD|ASPL0000014934	144	AN8050 [Emericella nidulans (t	0.585	0.881	0.449	1.9e-28
UNIPROTKB|Q88B14	141	PSPTO_0219 "Uncharacterized pr	0.562	0.865	0.483	5e-28

TAIR|locus:505006137 AT1G21065 "AT1G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 99/125 (79%), Positives = 113/125 (90%)

Query:    62 RWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDV 121
             +WAQKT+TLPPLRRGCHLITPKI+KEI +DLS+F CGLAH+FL HTSASLTINENYD DV
Sbjct:    77 KWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDPDV 136

Query:   122 RDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGM 181
             + DTETFLN+IVPEG SA W+HT+EGPDDMPAHIKSSMFGC LTIPIT G+L+MGTWQG+
Sbjct:   137 QADTETFLNRIVPEGNSAPWRHTMEGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQGI 196

Query:   182 FTLTH 186
             +   H
Sbjct:   197 WLCEH 201

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

FB|FBgn0263355 CG31688 [Drosophila melanogaster (taxid:7227)]

 Score = 369 (135.0 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 72/140 (51%), Positives = 98/140 (70%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q+ + L P  RG HL+T +I++++ + L+ F  GL H+ +LHTSASL +NE++D DVR
Sbjct:    37 WFQRKINLRPQHRGVHLVTEEILRQMPE-LAHFSVGLCHMQILHTSASLALNESWDPDVR 95

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
             DD E  LNKIVPEG    ++H+ EGPDDMPAH+K+   G +LTIPITDG+L++GTWQG++
Sbjct:    96 DDMEMMLNKIVPEG--LPYRHSCEGPDDMPAHVKACFLGSSLTIPITDGKLSLGTWQGVW 153

Query:   183 TLTHN---GLR--VKELHGC 197
                H    G R  V  L GC
Sbjct:   154 LCEHRDQAGSRKLVITLTGC 173

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q60BB8 MCA0559 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 70/139 (50%), Positives = 94/139 (67%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT+ L P  RG HL+T +I   + + L+ F+ G+AH F+ HTSASLTINEN D+DVR
Sbjct:     2 WFQKTIVLKPRSRGFHLVTAEITANLPE-LARFRQGIAHFFIQHTSASLTINENADADVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E +L   VPE R+  ++HTLEG DDMPAHIK+ + G ++T+P+  G+L +GTWQG++
Sbjct:    61 SDLEAYLLAQVPE-RAPYYRHTLEGDDDMPAHIKAVLVGNSVTVPLRQGRLALGTWQGIY 119

Query:   183 T---LTHNGLR--VKELHG 196
                   H G R  V  LHG
Sbjct:   120 LGEHRNHGGSRSLVATLHG 138

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47W13 CPS_4360 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 61/124 (49%), Positives = 88/124 (70%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQG++
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

Query:   183 TLTH 186
                H
Sbjct:   120 LGEH 123

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4360 CPS_4360 "conserved hypothetical protein TIGR00149" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 61/124 (49%), Positives = 88/124 (70%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  +TL   +RG HLIT +++K++  +L++  CG+ HLF+ H+SAS+T+NEN D  VR
Sbjct:     2 WYQTEITLKARKRGFHLITDEVLKQL-HELNKVNCGILHLFIKHSSASITLNENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E   N  VPE R+  ++HT EG DDMPAHIK+S+ G +L++PI+ GQLN+G WQG++
Sbjct:    61 SDMEAHFNHFVPE-RAPYYQHTYEGDDDMPAHIKASLLGNSLSLPISHGQLNIGIWQGIY 119

Query:   183 TLTH 186
                H
Sbjct:   120 LGEH 123

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KUY5 VC_0373 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/131 (50%), Positives = 85/131 (64%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQG++
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

Query:   183 T---LTHNGLR 190
                   H G+R
Sbjct:   120 LGEHRNHGGIR 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0373 VC_0373 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/131 (50%), Positives = 85/131 (64%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q T+ L P  RG HLIT +I +++ Q +     GL HLF+ HTSASLTINEN D  VR
Sbjct:     2 WHQHTIQLRPRARGFHLITDEIEQQLPQ-IKRLNVGLLHLFVQHTSASLTINENADPTVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E   N   PEG +  ++H  EG DDMPAHIKSS+ GC+++IPI  G+L +GTWQG++
Sbjct:    61 QDMEAHFNHAAPEG-APYYRHIDEGDDDMPAHIKSSLLGCSVSIPIQQGRLALGTWQGIY 119

Query:   183 T---LTHNGLR 190
                   H G+R
Sbjct:   120 LGEHRNHGGIR 130

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4MUS6 MGG_01675 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 68/157 (43%), Positives = 95/157 (60%)

Query:    32 ALFTKNPGSGTLKXXXXXXXXXXXXXXXXXRWAQKTVTLPPLRRGCHLITPKIVKEIAQD 91
             AL T N    T+                   W QK  TLP   RG +LIT  +VKEI + 
Sbjct:    36 ALLTGNLSRLTVSSSANRPSSYTSHPSAKMSWFQKQFTLPAKSRGSYLITDTVVKEIPE- 94

Query:    92 LSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVP----EGRSASWKHTLEG 147
             +  +K GL +LF+ HTS +L++NEN+D DVR+D    L++I P    +G S  + H+ EG
Sbjct:    95 IKNYKVGLLNLFVQHTSCALSLNENWDEDVREDMSNALDRIAPAAGPKGESL-YLHSAEG 153

Query:   148 PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTL 184
             PDDMPAHIKS++ G ++TIPI++G+L  GTWQG++ L
Sbjct:   154 PDDMPAHIKSALVGASVTIPISNGKLATGTWQGIWYL 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0045132 "meiotic chromosome segregation" evidence=ISS

ASPGD|ASPL0000014934 AN8050 [Emericella nidulans (taxid:162425)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 58/129 (44%), Positives = 89/129 (68%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W QKT TLP   RG +LIT  I+  + + + E+K G+ +LF+ HTS +L++NEN+D DVR
Sbjct:     3 WTQKTFTLPSKSRGSYLITDHILSSLPE-IREYKVGMLNLFVQHTSCALSLNENWDEDVR 61

Query:   123 DDTETFLNKIVPEGRSAS-WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGM 181
             +D    L++I P  +  + ++H+ EG DDMPAHIKS++ G ++ IPI++G+L  GTWQG+
Sbjct:    62 EDMSDALDRIAPADKKGNLYRHSAEGEDDMPAHIKSALIGASVNIPISNGKLATGTWQGI 121

Query:   182 FTLTHNGLR 190
             + L    +R
Sbjct:   122 WYLEFRAMR 130

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0045132 "meiotic chromosome segregation" evidence=IEA

UNIPROTKB|Q88B14 PSPTO_0219 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 60/124 (48%), Positives = 83/124 (66%)

Query:    63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
             W Q  + L    RG HL+T +IV  + Q L + + GL H++L HTSASLT+NEN D  VR
Sbjct:     2 WHQSRIALRARSRGFHLVTDEIVAGLPQ-LRDCRVGLLHVWLQHTSASLTVNENADPAVR 60

Query:   123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
              D E F N++VP+G    ++H  EGPDD+PAH K+S+ GC L +P+T G+L +GTWQG++
Sbjct:    61 RDFERFFNRLVPQGVDG-YEHDDEGPDDLPAHFKASLLGCQLFLPVTAGRLALGTWQGIY 119

Query:   183 TLTH 186
                H
Sbjct:   120 LGEH 123

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002972001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (236 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019349001	RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)	•								0.432
	GSVIVG00008868001	SubName- Full=Chromosome chr13 scaffold_210, whole genome shotgun sequence; (278 aa)	•								0.427
	GSVIVG00027326001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (188 aa)	•								0.421
	GSVIVG00016152001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (138 aa)	•			•					0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam01894	118	pfam01894, UPF0047, Uncharacterized protein family	8e-51
COG0432	137	COG0432, COG0432, Uncharacterized conserved protei	8e-46
TIGR00149	132	TIGR00149, TIGR00149_YjbQ, secondary thiamine-phos	4e-36

>gnl|CDD|216769 pfam01894, UPF0047, Uncharacterized protein family UPF0047

 Score =  160 bits (407), Expect = 8e-51
 Identities = 56/118 (47%), Positives = 83/118 (70%), Gaps = 4/118 (3%)

Query: 78  HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR 137
             IT ++ + + +  S  K GL H+F+ HT+ASLTINEN D DVR+D E FLN++VPE  
Sbjct: 1   IDITDEVREAVEE--SGVKNGLVHVFVPHTTASLTINENADPDVREDLERFLNRLVPED- 57

Query: 138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELH 195
              ++H  EGPD+MPAH+KSS+ G +LT+P+T+G+L +GTWQG++    +G R + + 
Sbjct: 58  -DPYRHNEEGPDNMPAHLKSSLLGPSLTVPVTNGRLALGTWQGIYLCEFDGPRSRRVV 114

This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important. Length = 118

>gnl|CDD|223509 COG0432, COG0432, Uncharacterized conserved protein [Function unknown]

 Score =  148 bits (375), Expect = 8e-46
 Identities = 56/131 (42%), Positives = 86/131 (65%), Gaps = 6/131 (4%)

Query: 61  PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDS 119
            +  QK +T+   RR     IT ++ K + +  S  K GL  +F+ HT+A+LTINE  + 
Sbjct: 1   MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINEA-EP 57

Query: 120 DVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQ 179
            +++D E FL K+VPEG  A ++H  EGPD+ PAH+K+S+ G +LTIP+ +G+L +GTWQ
Sbjct: 58  GLKEDIERFLEKLVPEG--AGYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQ 115

Query: 180 GMFTLTHNGLR 190
           G+F +  +G R
Sbjct: 116 GIFLVEFDGPR 126

Length = 137

>gnl|CDD|129253 TIGR00149, TIGR00149_YjbQ, secondary thiamine-phosphate synthase enzyme

 Score =  123 bits (310), Expect = 4e-36
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 5/126 (3%)

Query: 65  QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
           Q+ +     R     IT +I   +    S  K GL  +++ HT+ASLTINEN D DV  D
Sbjct: 1   QELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHD 58

Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTL 184
            E F  ++VP+    +++H  EG D+M AHIKSS+ G +  +P+ +G+L +GTWQG+F  
Sbjct: 59  IERFFERLVPDD--GNYEHD-EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFA 115

Query: 185 THNGLR 190
             +G R
Sbjct: 116 EFDGPR 121

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown [Unknown function, Enzymes of unknown specificity]. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG0432	137	Uncharacterized conserved protein [Function unknow	100.0
TIGR00149	132	TIGR00149_YbjQ secondary thiamine-phosphate syntha	100.0
PF01894	118	UPF0047: Uncharacterised protein family UPF0047; I	100.0
KOG3267	138	consensus Uncharacterized conserved protein [Funct	100.0

>COG0432 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.1e-55  Score=359.21  Aligned_cols=135  Identities=41%  Similarity=0.687  Sum_probs=128.6

Q ss_pred             CeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887           61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (217)
Q Consensus        61 m~~~q~titv~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (217)
                      |+|+|++|+|+|++| +++|||++|+++|++  ||+++|+|+||++||||||+||| +||+|++||+++|++|+|++.  
T Consensus         1 m~~~~~~l~v~T~~r~~~vdIT~ev~~~v~e--sgv~~Gl~~vf~~HtTaal~inE-~ep~l~~Di~~~l~~lvP~~~--   75 (137)
T COG0432           1 MKVYQKELTVSTKRRIEFVDITDEVEKFVRE--SGVKNGLLLVFVPHTTAALTINE-AEPGLKEDIERFLEKLVPEGA--   75 (137)
T ss_pred             CceEEEEEEEeccCccceEEchHHHHHHHHH--cCCccceEEEEecCcceEEEEec-CCCcHHHHHHHHHHHhCCCCC--
Confidence            899999999999987 999999999999998  99999999999999999999999 699999999999999999985  


Q ss_pred             CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCc-eEEEEEEeec
Q 027887          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRV-KELHGCMLLL  201 (217)
Q Consensus       140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~-R~v~v~~~~g  201 (217)
                      .|+|+.+|+|||+|||||+|+|+|++|||.||+|.|||||+|||+||||||+ |+|++. ++|
T Consensus        76 ~Y~H~~~~~Dn~~aHlkasllG~S~~iPv~~GrL~LGTWQ~I~~~E~dg~r~~R~v~v~-i~g  137 (137)
T COG0432          76 GYRHDEEGPDNAPAHLKASLLGPSLTIPVINGRLVLGTWQGIFLVEFDGPRHRRRVVVK-IIG  137 (137)
T ss_pred             CcccccCCCCchHHHHHHHhcCceEEEEEeCCeEceecccEEEEEEecCCCCccEEEEE-EcC
Confidence            5999999999999999999999999999999999999999999999999998 888654 354

>TIGR00149 TIGR00149_YbjQ secondary thiamine-phosphate synthase enzyme

Probab=100.00  E-value=1.2e-51  Score=334.88  Aligned_cols=129  Identities=38%  Similarity=0.631  Sum_probs=120.3

Q ss_pred             EEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeCc
Q 027887           67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (217)
Q Consensus        67 titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~  145 (217)
                      +|++.|.+ ++++|||++|+++|++  ||+++|+|+||++||||||++|||+||+++.||+++|+||+|++.  .|+|+ 
T Consensus         2 ~~~~~t~~~~~~~dIT~~V~~~v~~--s~i~~G~~~v~~~HTTa~l~inE~~dp~l~~Dl~~~l~~lvP~~~--~y~H~-   76 (132)
T TIGR00149         2 ELLLKTTKRVELIDITSEIEAVLQS--SGVKDGLLLVYVPHTTASLTINENADPDVLHDIERFFERLVPDDG--NYEHD-   76 (132)
T ss_pred             EEEEEcCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEecCCCccHHHHHHHHHHHHCCCCC--Ccccc-
Confidence            46777765 6999999999999998  999999999999999999999999999999999999999999874  59998 


Q ss_pred             cCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       146 eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      +++|||+||+||+|+|+|++|||.||+|.||+||+||||||||||+|+|+ ++++|
T Consensus        77 ~~~~n~~aHlka~L~G~s~tipi~dG~L~LGtwQ~I~l~E~Dg~r~R~v~-v~i~G  131 (132)
T TIGR00149        77 EGDDNMDAHIKSSLLGTSQHVPVENGRLQLGTWQGIFFAEFDGPRTRRII-VKVQG  131 (132)
T ss_pred             CCCCCHHHHHHHHhcCccEEEEEeCCEEcccCccEEEEEECCCCCCcEEE-EEEEe
Confidence            88999999999999999999999999999999999999999999999965 55566

Members of this protein family have been studied extensively by crystallography. Members from several different species have been shown to have sufficient thiamin phosphate synthase activity (EC 2.5.1.3) to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of this enzyme remains unknown.

>PF01894 UPF0047: Uncharacterised protein family UPF0047; InterPro: IPR001602 This family contains small uncharacterised proteins of 14 to 16 kDa mainly from bacteria although the signatures also occur in a hypothetical protein from archaea and from yeast

Probab=100.00  E-value=6.8e-51  Score=324.94  Aligned_cols=117  Identities=43%  Similarity=0.765  Sum_probs=103.2

Q ss_pred             EeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeCccCCCCcchhhhh
Q 027887           78 HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS  157 (217)
Q Consensus        78 ~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~eG~dN~~AHlKs  157 (217)
                      ||||++|+++|++  ||+++|+|+||++||||||++|||+||++++||+++|+||+|++.  .|+|+.+|++||+||+||
T Consensus         1 idIT~~V~~~v~~--s~i~~Gl~~v~~~HTTaal~inE~~dp~v~~Dl~~~l~~lvP~~~--~y~H~~~~~~n~~aHlks   76 (118)
T PF01894_consen    1 IDITEEVREAVEE--SGIRNGLVHVFVPHTTAALTINENADPDVRRDLLEALERLVPEDD--PYRHNEEGPDNAPAHLKS   76 (118)
T ss_dssp             EE-HHHHHHHHHH--HT-SEEEEEEEESSSSEEEEEEESSSHHHHHHHHHHHHHHS-TTS--T-GGGCTT-STHHHHHHH
T ss_pred             CcchHHHHHHHHH--hCCcceEEEEEeCCCeEEEEEeecCChhHHHhHHHHHHHhCCCCC--ceEeCCccccCccHHHHH
Confidence            7999999999998  999999999999999999999999999999999999999999984  799999999999999999


Q ss_pred             hccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887          158 SMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM  198 (217)
Q Consensus       158 sLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~  198 (217)
                      +|+|+|++|||.||+|+||+||+|||+||||||+|+|++..
T Consensus        77 ~l~G~S~~vpv~~G~L~LGtwQ~I~l~E~dgpr~R~v~v~i  117 (118)
T PF01894_consen   77 SLIGPSLTVPVHDGKLALGTWQGIYLVEFDGPRERTVVVQI  117 (118)
T ss_dssp             HHH-SEEEEEEETTEE---TTEEEEEEESS-SSEEEEEEEE
T ss_pred             HhcCCeEEEEEECCEEccCCcCEEEEEECCCCCeEEEEEEE
Confidence            99999999999999999999999999999999999998653

; PDB: 1VPH_E 2P6C_A 2CU5_A 1VMJ_A 1XBF_B 1VMH_A 1VE0_A 2P6H_B 1VMF_C.

>KOG3267 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.2e-44  Score=289.17  Aligned_cols=136  Identities=59%  Similarity=1.045  Sum_probs=128.3

Q ss_pred             EEEEEecCCCCeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeC
Q 027887           65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT  144 (217)
Q Consensus        65 q~titv~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~  144 (217)
                      |++|++...++|||.||+++.+.++++++.+..|++++|.+||+|+|+|||||||+++.|++.+|+|+||++.+.+|+|+
T Consensus         1 qk~itl~~~~kg~~iit~~ilkeir~dl~~fn~g~~~~fiqhtsaaltinen~d~d~qad~~~~ldkivpe~nsa~~rht   80 (138)
T KOG3267|consen    1 QKIITLDPLRKGCHIITNDILKEIREDLKDFNCGLAHFFIQHTSAALTINENWDADTQADMEDFLDKIVPEGNSAGWRHT   80 (138)
T ss_pred             CceEecCcccCccEEecHHHHHHHHHHHhhccccceeeeeeccceeeEecccCCcchhhhHHHHHHhhCcCCCCcccccc
Confidence            67899998889999999999999988889999999999999999999999999999999999999999999977799999


Q ss_pred             ccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCc-eEEEEEEeec
Q 027887          145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRV-KELHGCMLLL  201 (217)
Q Consensus       145 ~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~-R~v~v~~~~g  201 (217)
                      .||+||||||+||+|+|+++||||.+|||.|||||+|+|+|||+.++ |+| ||-++|
T Consensus        81 ~eg~ddmpahikssl~g~qltipit~gklslgtwq~i~l~e~r~~p~ar~i-v~ti~g  137 (138)
T KOG3267|consen   81 AEGLDDMPAHIKSSLFGCQLTIPITKGKLSLGTWQDIQLAEFRDAPHARRI-VCTIIG  137 (138)
T ss_pred             ccCcccchhhhhhccccceEEEEeccCeecccccccchhhhhhcCCcccEE-EEEEec
Confidence            99999999999999999999999999999999999999999997665 666 687776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1vmh_A	144	Crystal Structure Of An Uncharacterized Conserved P		2e-13
1xbf_A	140	X-Ray Structure Northeast Structural Genomics Conso		4e-13
1vmj_A	151	Crystal Structure Of A Putative Thiamin Phosphate S		6e-11
1vmf_A	145	Crystal Structure Of A Ybjq-Like Fold Protein Of Un		4e-10
2p6c_A	137	Crystal Structure Of Hypothetical Protein Aq_2013 F		3e-09
1ve0_A	134	Crystal Structure Of Uncharacterized Protein St2072		9e-09
1vph_A	149	Crystal Structure Of A Ybjq-Like Protein Of Unknown		1e-07
2cu5_A	129	Crystal Structure Of The Conserved Hypothetical Pro		5e-07
2p6h_A	134	Crystal Structure Of Hypothetical Protein Ape1520 F		2e-06

>pdb|1VMH|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein YjbqUPF0047 Family, Ortholog Yugu B.Subtilis (Ca_c0907) From Clostridium Acetobutylicum At 1.31 A Resolution Length = 144

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G+A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 39  AVDESGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 94
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKEL 194
            +  AHIK+S+ G +  I I +G+L +GTWQG++    +G R +++
Sbjct: 95  -NSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKV 139

>pdb|1XBF|A Chain A, X-Ray Structure Northeast Structural Genomics Consortium Target Car10 From C. Acetobutylicum Length = 140

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 89  AQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGP 148
           A D S    G A +F  HT+A +TINEN D DV  D    L+K+ P  +   +KH +EG 
Sbjct: 27  AVDESGVSDGXAVVFCPHTTAGITINENADPDVTRDILVNLDKVFP--KVGDYKH-VEG- 82
Query: 149 DDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLL 200
            +  AHIK+S+ G +  I I +G+L +GTWQG++    +G R +++   ++L
Sbjct: 83  -NSHAHIKASLXGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKIIL 133

>pdb|1VMJ|A Chain A, Crystal Structure Of A Putative Thiamin Phosphate Synthase (Tm0723) From Thermotoga Maritima Msb8 At 1.52 A Resolution Length = 151

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 69/121 (57%), Gaps = 3/121 (2%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    ITP +++E  ++ S  K GL     +H +AS+ IN++ +  +  D E +L K+ 
Sbjct: 27  RREFINITP-LLEECVRE-SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLA 83
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKE 193
           PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+ +F    +G+R K 
Sbjct: 84  PEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKR 143
Query: 194 L 194
           +
Sbjct: 144 V 144

>pdb|1VMF|A Chain A, Crystal Structure Of A Ybjq-Like Fold Protein Of Unknown Function (Bh3498) From Bacillus Halodurans At 1.46 A Resolution Length = 145

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 12/97 (12%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT----LEGPDDMPA 153
           G+A +  LHT+A +T+NEN D DV+ D    L+++ P      W H     +EG  +  A
Sbjct: 45  GVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYP------WHHENDRHMEG--NTAA 96
Query: 154 HIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR 190
           H+K+S  G   T+ I++G+L +GTWQG++    +G R
Sbjct: 97  HLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPR 133

>pdb|2P6C|A Chain A, Crystal Structure Of Hypothetical Protein Aq_2013 From Aquifex Aeolicus Vf5. Length = 137

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  + +D   +L K+ 
Sbjct: 15  RRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLA 71
Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKE 193
           P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ +F    +G R K 
Sbjct: 72  P--YRPDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKR 129
Query: 194 L 194
           +
Sbjct: 130 V 130

>pdb|1VE0|A Chain A, Crystal Structure Of Uncharacterized Protein St2072 From Sulfolobus Tokodaii Length = 134

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 84  IVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143
           I +++++ +     G+AH+ + HT+ ++ INE  +S +  D   +  K+VP      ++H
Sbjct: 21  ITEQVSEAIKGINNGIAHVIVKHTTCAIIINE-AESGLXKDFLNWAKKLVPP--DGEFEH 77
Query: 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVK 192
            +   ++  AH+ S++ G +  +PI +G+L++GTWQ +  L  +G R +
Sbjct: 78  NII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTR 125

>pdb|1VPH|A Chain A, Crystal Structure Of A Ybjq-Like Protein Of Unknown Function (Sso2532) From Sulfolobus Solfataricus P2 At 1.76 A Resolution Length = 149

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 85  VKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT 144
           V++I +  S  K G+  +F+ H++A++  NE ++  + +D  T + +     RS  WKH 
Sbjct: 37  VEQIVEK-SGIKNGICLIFVAHSTAAIVANE-HERGLMEDILTKIKEFTEPSRS--WKHN 92
Query: 145 LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR 190
           L   D+  AH+ ++  G     P+ +G+L  GTWQ +F +  +G R
Sbjct: 93  L-IDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPR 137

>pdb|2CU5|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1486 From Thermus Thermophilus Hb8 Length = 129

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL +LF+ HT+  LT+ E  D  V  D    L ++ P  R    +H LEG  +  AH+KS
Sbjct: 32  GLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHRPQD-RH-LEG--NSHAHLKS 87
Query: 158 SMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKEL 194
            + G  L +    G+L +G WQ +F    +G RV+E+
Sbjct: 88  LLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREV 124

>pdb|2P6H|A Chain A, Crystal Structure Of Hypothetical Protein Ape1520 From Aeropyrum Pernix K1 Length = 134

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 98  GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
           GL  +++ HT+A++ +NE  +  + +D   F+ ++   G    WKH L   +   AH+ +
Sbjct: 35  GLLVVYVPHTTAAVAVNE-AEPRLMEDIVEFIRELTKPG--GPWKHNLVDVNAH-AHLGN 90
Query: 158 SMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR 190
           ++ G +  IP+  G+L++GTWQ +  +  +G R
Sbjct: 91  TIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPR 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	3e-32
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	1e-30
1vmf_A	145	Hypothetical protein; structural genomics, joint c	4e-30
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	3e-29
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	4e-28
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	7e-27
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	1e-24
2p6h_A	134	Hypothetical protein; structural genomics, unknown	2e-24

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1 Length = 151

 Score =  113 bits (284), Expect = 3e-32
 Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 51  NPNPNPMASNPRWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSA 109
           + + + M    +  +K +      RR    ITP + + + +  S  K GL     +H +A
Sbjct: 7   HHHHHHM----KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITA 60

Query: 110 SLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPIT 169
           S+ IN+  +  +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I IT
Sbjct: 61  SVFIND-DEPGLHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAIT 119

Query: 170 DGQLNMGTWQGMFTLTHNGLRVKEL 194
           D ++++G W+ +F    +G+R K +
Sbjct: 120 DRKMDLGPWEQVFYGEFDGMRPKRV 144

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus} Length = 137

 Score =  109 bits (272), Expect = 1e-30
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 6/134 (4%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K +T     RR    IT ++ K + +  SE K GL  +  +H ++S+ I ++ +  
Sbjct: 2   KAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDDEE-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           + +D   +L K+ P      +KH   G D+  AH+K+ +    + +PIT+G+L++G WQ 
Sbjct: 59  LHEDIWEWLEKLAPYR--PDYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQE 116

Query: 181 MFTLTHNGLRVKEL 194
           +F    +G R K +
Sbjct: 117 IFYAEFDGQRPKRV 130

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1 Length = 145

 Score =  107 bits (269), Expect = 4e-30
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 60  NPRWAQKTVTLPPLRRGC-HLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYD 118
           +     KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D
Sbjct: 8   HHHHHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENAD 65

Query: 119 SDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTW 178
            DV+ D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTW
Sbjct: 66  PDVKRDMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTW 121

Query: 179 QGMFTLTHNGLR 190
           QG++    +G R
Sbjct: 122 QGVYFCEFDGPR 133

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus} Length = 129

 Score =  105 bits (262), Expect = 3e-29
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 63  WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
                + +P    G   IT K+   ++        GL +LF+ HT+  LT+ E  D  V 
Sbjct: 2   EGVVRLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVA 56

Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMF 182
            D    L ++ P               +  AH+KS + G  L +    G+L +G WQ +F
Sbjct: 57  QDLLGRLAELAPR----HRPQDRHLEGNSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVF 112

Query: 183 TLTHNGLRVKEL 194
               +G RV+E+
Sbjct: 113 LAEFDGPRVREV 124

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A Length = 144

 Score =  102 bits (255), Expect = 4e-28
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 26  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 83

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKE 193
           P+              +  AHIK+S+ G +  I I +G+L +GTWQG++    +G R ++
Sbjct: 84  PK-----VGDYKHVEGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRK 138

Query: 194 L 194
           +
Sbjct: 139 V 139

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii} Length = 134

 Score = 99.0 bits (246), Expect = 7e-27
 Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 62  RWAQKTVTLPPLRRGCHL-ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +   K  T+    R   + IT     ++++ +     G+AH+ + HT+ ++ INE     
Sbjct: 2   KIISKEFTVKTRSRFDSIDITE----QVSEAIKGINNGIAHVIVKHTTCAIIINEAESGL 57

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           ++D        + P+G    ++H +   ++  AH+ S++ G +  +PI +G+L++GTWQ 
Sbjct: 58  MKDFLNWAKKLVPPDGE---FEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQR 113

Query: 181 MFTLTHNGLRVKEL 194
           +  L  +G R + +
Sbjct: 114 IILLEFDGPRTRTV 127

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1 Length = 149

 Score = 93.7 bits (232), Expect = 1e-24
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +     + +    +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    
Sbjct: 14  KVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGL 71

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           + D          P      WKH L   D+  AH+ ++  G     P+ +G+L  GTWQ 
Sbjct: 72  MEDILTKIKEFTEPSRS---WKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQN 127

Query: 181 MFTLTHNGLR 190
           +F +  +G R
Sbjct: 128 IFLVELDGPR 137

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix} Length = 134

 Score = 92.8 bits (230), Expect = 2e-24
 Identities = 27/132 (20%), Positives = 63/132 (47%), Gaps = 7/132 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
             + T+    R     +T K+ + ++        GL  +++ HT+A++ +NE  +  + +
Sbjct: 3   TGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNE-AEPRLME 59

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFT 183
           D   F+ ++   G             +  AH+ +++ G +  IP+  G+L++GTWQ +  
Sbjct: 60  DIVEFIRELTKPGGPWKHNLV---DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILF 116

Query: 184 LTHNGLRVKELH 195
           +  +G R + ++
Sbjct: 117 VEMDGPRERTVN 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2p6c_A	137	AQ_2013 protein; NPPSFA, national project on prote	100.0
1vmj_A	151	Hypothetical protein TM0723; putative thiamin phos	100.0
2p6h_A	134	Hypothetical protein; structural genomics, unknown	100.0
1ve0_A	134	Hypothetical protein (ST2072); structural genomics	100.0
1vph_A	149	Hypothetical protein SSO2532; YBJQ-like fold, stru	100.0
1vmh_A	144	Uncharacterized conserved protein YJBQ/UPF0047 FA	100.0
1vmf_A	145	Hypothetical protein; structural genomics, joint c	100.0
2cu5_A	129	Conserved hypothetical protein TT1486; thermus the	100.0

>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}

Probab=100.00  E-value=1.7e-56  Score=364.03  Aligned_cols=135  Identities=27%  Similarity=0.450  Sum_probs=129.3

Q ss_pred             CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (217)
Q Consensus        61 m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (217)
                      |+++|++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.  
T Consensus         1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   75 (137)
T 2p6c_A            1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP--   75 (137)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred             CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence            89999999999986 7999999999999998  999999999999999999999999 99999999999999999974  


Q ss_pred             CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      +|+|++||+||||||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus        76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G  136 (137)
T 2p6c_A           76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFDGQRPKRVVIKI-IG  136 (137)
T ss_dssp             TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESSCSSCEEEEEEE-EE
T ss_pred             CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECCCCCccEEEEEE-ec
Confidence            59999999999999999999999999999999999999999999999999999997554 66

>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1

Probab=100.00  E-value=8.9e-55  Score=359.40  Aligned_cols=138  Identities=28%  Similarity=0.459  Sum_probs=129.2

Q ss_pred             CCeEEEEEEEecCC-CCeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 027887           60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (217)
Q Consensus        60 ~m~~~q~titv~T~-~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~  138 (217)
                      -|+-|+++|+|+|. +++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|+||||++..
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~   88 (151)
T 1vmj_A           12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY   88 (151)
T ss_dssp             -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred             hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence            48999999999996 57999999999999998  999999999999999999999999 999999999999999998741


Q ss_pred             CCceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       139 ~~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      ..|+|++||+|||+||+||+|+|+|++|||.||+|.|||||+|||||||+||+|+|++. ++|
T Consensus        89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dg~r~R~V~v~-i~G  150 (151)
T 1vmj_A           89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVLVK-IIG  150 (151)
T ss_dssp             GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEEEE-EEE
T ss_pred             CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCeeEEEEE-Eec
Confidence            16999999999999999999999999999999999999999999999999999999755 466

>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}

Probab=100.00  E-value=1.6e-54  Score=351.33  Aligned_cols=132  Identities=24%  Similarity=0.429  Sum_probs=125.1

Q ss_pred             EEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCc
Q 027887           63 WAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW  141 (217)
Q Consensus        63 ~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y  141 (217)
                      ++|++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.  +|
T Consensus         1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y   75 (134)
T 2p6h_A            1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW   75 (134)
T ss_dssp             CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred             CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence            378999999987 4999999999999998  999999999999999999999999 99999999999999999874  69


Q ss_pred             eeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       142 ~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      +|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus        76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G  133 (134)
T 2p6h_A           76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEMDGPRERTVNLLY-LG  133 (134)
T ss_dssp             GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE-EE
T ss_pred             cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEECCCCCceEEEEEE-ec
Confidence            99998 999999999999999999999999999999999999999999999997554 66

>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}

Probab=100.00  E-value=3e-54  Score=349.73  Aligned_cols=132  Identities=26%  Similarity=0.449  Sum_probs=125.5

Q ss_pred             CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (217)
Q Consensus        61 m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (217)
                      |+++|++|+|+|++ ++++|||++|+++|+    |+++|+|+||++||||||+|||| ||+|++||+++|+||+|++.  
T Consensus         1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~--   73 (134)
T 1ve0_A            1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG--   73 (134)
T ss_dssp             CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred             CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence            89999999999987 499999999999996    89999999999999999999999 99999999999999999874  


Q ss_pred             CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      +|+|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++.. +|
T Consensus        74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i-~G  133 (134)
T 1ve0_A           74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEFDGPRTRTVLVKS-MG  133 (134)
T ss_dssp             CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSCEEEEEEEE-EE
T ss_pred             CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEECCCCCeeEEEEEE-ec
Confidence            5999999 999999999999999999999999999999999999999999999997554 66

>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1

Probab=100.00  E-value=3.4e-54  Score=355.36  Aligned_cols=135  Identities=25%  Similarity=0.457  Sum_probs=127.9

Q ss_pred             CCeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 027887           60 NPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (217)
Q Consensus        60 ~m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~  138 (217)
                      -|++|+++|+|+|++ ++++|||++|+++|++  ||+++|+|+||++||||||+|||| ||+|++||+++|+||+|+++ 
T Consensus        12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~-   87 (149)
T 1vph_A           12 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   87 (149)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             eeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC-
Confidence            499999999999987 7999999999999998  999999999999999999999999 99999999999999999874 


Q ss_pred             CCceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCC-ceEEEEEEeec
Q 027887          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR-VKELHGCMLLL  201 (217)
Q Consensus       139 ~~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr-~R~v~v~~~~g  201 (217)
                       +|+|++| +|||+||+||+|+|+|++|||.||+|.|||||+||||||||+| +|+|++ .++|
T Consensus        88 -~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~dg~r~~R~v~v-~i~G  148 (149)
T 1vph_A           88 -SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHITV-EILG  148 (149)
T ss_dssp             -CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEEE-EEEE
T ss_pred             -CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEECCCCCCCeEEEE-EEec
Confidence             5999988 9999999999999999999999999999999999999999998 788864 4466

>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A

Probab=100.00  E-value=2.6e-52  Score=342.48  Aligned_cols=127  Identities=33%  Similarity=0.494  Sum_probs=120.0

Q ss_pred             EEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcee
Q 027887           65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH  143 (217)
Q Consensus        65 q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H  143 (217)
                      -++|+|+|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|++||+++|+||+|++.  +|+|
T Consensus        16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H   91 (144)
T 1vmh_A           16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH   91 (144)
T ss_dssp             -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred             cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence            3579999985 7999999999999998  999999999999999999999999999999999999999999874  6999


Q ss_pred             CccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887          144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM  198 (217)
Q Consensus       144 ~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~  198 (217)
                      +   +|||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++..
T Consensus        92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~R~v~v~i  143 (144)
T 1vmh_A           92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKI  143 (144)
T ss_dssp             T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEEE
T ss_pred             C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEEE
Confidence            7   789999999999999999999999999999999999999999999998653

>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1

Probab=100.00  E-value=4.5e-52  Score=341.37  Aligned_cols=131  Identities=34%  Similarity=0.477  Sum_probs=121.5

Q ss_pred             EEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCce
Q 027887           64 AQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK  142 (217)
Q Consensus        64 ~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~  142 (217)
                      ..++|+|.|.+ ++++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|++||+++|+||||++. ..|+
T Consensus        12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~   88 (145)
T 1vmf_A           12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR   88 (145)
T ss_dssp             CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred             ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence            46899999985 7999999999999998  999999999999999999999999999999999999999999874 2699


Q ss_pred             eCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCC-ceEEEEEEeec
Q 027887          143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR-VKELHGCMLLL  201 (217)
Q Consensus       143 H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr-~R~v~v~~~~g  201 (217)
                      | .||  ||+||+||+|+|+|++|||.||+|.|||||+|||||||+|| +|+|++. ++|
T Consensus        89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~dgpr~~R~v~v~-i~G  144 (145)
T 1vmf_A           89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFVVK-LLT  144 (145)
T ss_dssp             C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEEEE-EEE
T ss_pred             c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEECcCCCCCcEEEEE-Eec
Confidence            9 455  89999999999999999999999999999999999999999 8999755 466

>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}

Probab=100.00  E-value=1.6e-50  Score=326.42  Aligned_cols=124  Identities=32%  Similarity=0.521  Sum_probs=113.8

Q ss_pred             EEEEecCCCCeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeCc
Q 027887           66 KTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (217)
Q Consensus        66 ~titv~T~~r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~  145 (217)
                      .+|+|++++++++|||++|+++|+   .  ++|+|+||++||||||+||||+||+|++||+++|+||+|+++ .+|+| .
T Consensus         5 ~~i~~~~~~~~~~dIT~~V~~~v~---~--~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~   77 (129)
T 2cu5_A            5 VRLEVPTPEEGFVNITRKVEAALS---G--HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-L   77 (129)
T ss_dssp             EEEEEEECSSEEEECHHHHHHTST---T--CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-T
T ss_pred             EEEEEeCCCCeEEECHHHHHHHhh---h--cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-C
Confidence            357788667899999999999996   2  999999999999999999999999999999999999999872 25999 4


Q ss_pred             cCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM  198 (217)
Q Consensus       146 eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~  198 (217)
                      ||  ||+||+||+|+|+|++|||.||+|.|||||+||||||||||+|+|++..
T Consensus        78 eG--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~dg~r~R~v~v~i  128 (129)
T 2cu5_A           78 EG--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEFDGPRVREVWVRL  128 (129)
T ss_dssp             TS--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSEEEEEEEEE
T ss_pred             CC--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEECCCCceeEEEEEE
Confidence            55  8999999999999999999999999999999999999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1vmja_	139	d.273.1.1 (A:) Hypothetical protein TM0723 {Thermo	3e-39
d1vmfa_	136	d.273.1.1 (A:) Hypothetical protein BH3498 {Bacill	4e-35
d1vmha_	129	d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Cl	2e-34
d1vpha_	138	d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfo	1e-30

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]} Length = 139

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

 Score =  129 bits (326), Expect = 3e-39
 Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 62  RWAQKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSD 120
           +  +K +      RR    ITP + + + +  S  K GL     +H +AS+ IN++    
Sbjct: 2   KSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDDEP-G 58

Query: 121 VRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQG 180
           +  D E +L K+ PE   + +KH   G D+  AH+K ++ G  + I ITD ++++G W+ 
Sbjct: 59  LHHDFEVWLEKLAPEKPYSQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQ 118

Query: 181 MFTLTHNGLRVKEL 194
           +F    +G+R K +
Sbjct: 119 VFYGEFDGMRPKRV 132

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]} Length = 136

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

 Score =  119 bits (299), Expect = 4e-35
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 7/127 (5%)

Query: 65  QKTVTLP-PLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRD 123
            KT  L    R     IT +I   I +  +    G+A +  LHT+A +T+NEN D DV+ 
Sbjct: 4   MKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKR 61

Query: 124 DTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFT 183
           D    L+++ P       ++      +  AH+K+S  G   T+ I++G+L +GTWQG++ 
Sbjct: 62  DMIMRLDEVYPW----HHENDRHMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYF 117

Query: 184 LTHNGLR 190
              +G R
Sbjct: 118 CEFDGPR 124

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]} Length = 129

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  117 bits (295), Expect = 2e-34
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 7/121 (5%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
                 IT  + K + +  S    G+A +F  HT+A +TINEN D DV  D    L+K+ 
Sbjct: 11  DDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVF 68

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKE 193
           P+     +KH      +  AHIK+S+ G +  I I +G+L +GTWQG++    +G R ++
Sbjct: 69  PKV--GDYKHV---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRK 123

Query: 194 L 194
           +
Sbjct: 124 V 124

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]} Length = 138

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  107 bits (269), Expect = 1e-30
 Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 6/117 (5%)

Query: 74  RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIV 133
           +     IT ++ + + +  S  K G+  +F+ H++A++  NE+    + D     L KI 
Sbjct: 16  QFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEHERGLMED----ILTKIK 69

Query: 134 PEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR 190
                +         D+  AH+ ++  G     P+ +G+L  GTWQ +F +  +G R
Sbjct: 70  EFTEPSRSWKHNLIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPR 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1vmja_	139	Hypothetical protein TM0723 {Thermotoga maritima [	100.0
d1vmfa_	136	Hypothetical protein BH3498 {Bacillus halodurans [	100.0
d1vmha_	129	B.subtilis YugU ortolog CAC0907 {Clostridium aceto	100.0
d1vpha_	138	Hypothetical protein SSO2532 {Sulfolobus solfatari	100.0

>d1vmja_ d.273.1.1 (A:) Hypothetical protein TM0723 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein TM0723
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.2e-55  Score=354.83  Aligned_cols=137  Identities=28%  Similarity=0.471  Sum_probs=130.0

Q ss_pred             CeEEEEEEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 027887           61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA  139 (217)
Q Consensus        61 m~~~q~titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~  139 (217)
                      |++++++|+++|++ ++++|||++|+++|++  |||++|+|+||++||||||+|||| ||+++.||+++|++|+|+++..
T Consensus         1 M~~~~~~i~~~T~~~~~~~dIT~~v~~~v~~--s~i~~Giv~vf~~HTTasl~inE~-dp~~~~Dl~~~l~~lvP~~~~~   77 (139)
T d1vmja_           1 MKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPYS   77 (139)
T ss_dssp             CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCGG
T ss_pred             CCcEEEEEEEECCCCCEEEEChHHHHHHHHH--hCCceEEEEEEeCCCceEEEEecC-chhHHhhHHHHHHHhhccCCcc
Confidence            89999999999987 5999999999999998  999999999999999999999999 9999999999999999987434


Q ss_pred             CceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEEeec
Q 027887          140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCMLLL  201 (217)
Q Consensus       140 ~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~~~g  201 (217)
                      .|+|+.+|+|||+||+||+|+|+|++|||.||+|.||+||+|||||||++|+|+|+ ++++|
T Consensus        78 ~y~H~~~g~dn~~aHiks~l~g~s~tipi~~G~L~LGtWQ~I~l~E~dg~r~R~v~-v~iiG  138 (139)
T d1vmja_          78 QYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEFDGMRPKRVL-VKIIG  138 (139)
T ss_dssp             GCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCSSCEEEE-EEEEE
T ss_pred             ccCcCCccCCCcHHHHHHhhhCCeEEEEEECCEECccCCCEEEEEECcCCCceEEE-EEEEc
Confidence            69999999999999999999999999999999999999999999999999999987 55576

>d1vmfa_ d.273.1.1 (A:) Hypothetical protein BH3498 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein BH3498
species: Bacillus halodurans [TaxId: 86665]

Probab=100.00  E-value=1.4e-51  Score=332.94  Aligned_cols=132  Identities=32%  Similarity=0.443  Sum_probs=120.7

Q ss_pred             EEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCc
Q 027887           63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW  141 (217)
Q Consensus        63 ~~q~titv~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y  141 (217)
                      .|+++|+|+|+++ +++|||++|+++|++  ||+++|+|+||++||||||+||||+||+|+.||+++|++|+|+..  .|
T Consensus         2 ~~~~~~~~~T~~~~~~idIT~~V~~~v~~--sgi~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~l~P~~~--~~   77 (136)
T d1vmfa_           2 HHMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH--EN   77 (136)
T ss_dssp             CCEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC--TT
T ss_pred             CcEEEEEEEECCCCeEEEChHHHHHHHHH--cCCcceEEEEEeCCCceEEEEecCCCccHHHHHHHHHhccCCccc--cc
Confidence            4789999999875 799999999999998  999999999999999999999999999999999999999999863  23


Q ss_pred             eeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCc-eEEEEEEeec
Q 027887          142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRV-KELHGCMLLL  201 (217)
Q Consensus       142 ~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~-R~v~v~~~~g  201 (217)
                      .|  +++|||+||+||+|+|+|++|||.||+|.||+||+|||+|||++|+ |+|. ++++|
T Consensus        78 ~~--~~~~n~~aHlks~l~g~s~tiPv~~G~L~LGtWQ~I~l~E~d~~r~~R~v~-v~iiG  135 (136)
T d1vmfa_          78 DR--HMEGNTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEFDGPRTNRKFV-VKLLT  135 (136)
T ss_dssp             CC--CTTSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCCCSCEEEE-EEEEE
T ss_pred             ce--eccCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEEccCCCCceEEE-EEEec
Confidence            33  4789999999999999999999999999999999999999999984 7775 55576

>d1vmha_ d.273.1.1 (A:) B.subtilis YugU ortolog CAC0907 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: B.subtilis YugU ortolog CAC0907
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=4.1e-51  Score=327.85  Aligned_cols=125  Identities=34%  Similarity=0.512  Sum_probs=117.8

Q ss_pred             EEEecCCC-CeEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCceeCc
Q 027887           67 TVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTL  145 (217)
Q Consensus        67 titv~T~~-r~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~  145 (217)
                      +++|+|++ .+++|||++|+++|++  ||+++|+|+||++||||||++|||+||+|+.||+++|++|+|++.  +|+|. 
T Consensus         3 e~t~~T~~~~~~idIT~~V~~~v~~--s~i~~G~v~vf~~HTTasl~inEn~dp~v~~Dl~~~l~~lvP~~~--~y~H~-   77 (129)
T d1vmha_           3 EYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKHV-   77 (129)
T ss_dssp             EEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCCT-
T ss_pred             EEEEEcCCCCEEEEChHHHHHHHHH--cCCcceEEEEEeCCceEEEEEcccCCcchHHHHHHHHHhcCCCCC--CCccc-
Confidence            68999986 5799999999999998  999999999999999999999999999999999999999999974  69995 


Q ss_pred             cCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCCceEEEEEE
Q 027887          146 EGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLRVKELHGCM  198 (217)
Q Consensus       146 eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr~R~v~v~~  198 (217)
                        ++||+||+||+|+|+|++|||.||+|.||+||+|||+|||+||+|+|.|..
T Consensus        78 --~~n~~aHiks~l~g~s~tiPi~~G~L~LGtWQ~I~l~E~d~~r~R~v~v~i  128 (129)
T d1vmha_          78 --EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEFDGPRDRKVFVKI  128 (129)
T ss_dssp             --TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEESSCSCEEEEEEEE
T ss_pred             --cCcchhhhhhHhcCCeEEEEEECCEECcCCccEEEEEECcCCceeEEEEEE
Confidence              569999999999999999999999999999999999999999999997543

>d1vpha_ d.273.1.1 (A:) Hypothetical protein SSO2532 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: YjbQ-like
superfamily: YjbQ-like
family: YjbQ-like
domain: Hypothetical protein SSO2532
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=4.6e-51  Score=330.25  Aligned_cols=135  Identities=24%  Similarity=0.456  Sum_probs=125.8

Q ss_pred             CCeEEEEEEEecCCCC-eEEeCcHHHHHHHHhhccCcccceEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 027887           60 NPRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS  138 (217)
Q Consensus        60 ~m~~~q~titv~T~~r-~~~dIT~eV~~~V~~~~SgIk~Giv~Vfv~HTTAsLtInEn~DP~v~~Dl~~~L~rLvP~~~~  138 (217)
                      .|++++++|+|+|.++ +++|||++|+++|++  ||+++|+|+||++||||||+|||| ||++++|++++|++++|++. 
T Consensus         1 ~M~~~~~~i~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~i~En-~~~~~~d~~~~l~~~~p~~~-   76 (138)
T d1vpha_           1 HMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR-   76 (138)
T ss_dssp             CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS-
T ss_pred             CCceEEEEEEEEECCCCEEEECHHHHHHHHHH--cCCCccEEEEEeCCCeeEEEEEcc-hhhhHHHHHHhhhhhccccC-
Confidence            4999999999999876 999999999999998  999999999999999999999998 88999999999999999874 


Q ss_pred             CCceeCccCCCCcchhhhhhccCceEEEEEeCCeeeccCcceEEEEecCCCC-ceEEEEEEeec
Q 027887          139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGMFTLTHNGLR-VKELHGCMLLL  201 (217)
Q Consensus       139 ~~Y~H~~eG~dN~~AHlKssLlG~SltIPV~dGkL~LGtWQgIyl~EfDgpr-~R~v~v~~~~g  201 (217)
                       .|+|+ +++||||||+||+|+|+|++|||.||+|.||+||+|||+|||++| +|+|+ ++++|
T Consensus        77 -~y~h~-~~~dn~~aHiks~L~g~s~tipi~dG~L~LGtWQ~I~l~E~d~~~~~R~v~-v~i~G  137 (138)
T d1vpha_          77 -SWKHN-LIDDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVELDGPRSERHIT-VEILG  137 (138)
T ss_dssp             -CCGGG-GTCSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEESSCCEEEEEEE-EEEEE
T ss_pred             -cccee-cCCCChHHHHHhhhcCCeEEEEEECCEECccCccEEEEEECcCCCCceEEE-EEEEe
Confidence             69886 479999999999999999999999999999999999999999998 57786 55576