Citrus Sinensis ID: 027888

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTKVGKNVGVDIRELEVVDCEEEEEEEEDWLPPPPKVMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEcccEEEEEEEcccHHHHHHHHHHHHcccccccEEEEEccEEccccccccccccccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEcccccccccccccccccccccccccccccEcccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccEEEEEEEcccHHHHHHHHHHHHccccHcEEEEEEcccEccccccHHHcccccccEEEEEEccc
Coil and Loop (DISEMBL)
madltevddleplfdyrrvqphnlvffddddtppipcpkrtkvgknvgvdirelevvdceeeeeeeedwlppppkvmvqKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKvnldqenlvfcfdgdkigpeatpaslemedndIIEVHTKKT
Flexible Loop (DISEMBL)
madltevddleplfdyRRVQPHnlvffddddtppipcpkrtkvgknvgvdIRELEVVDCEEeeeeeedwlppppkvMVQKQLVEDSAIKELRLKKQELvsfaksaddvIRAVEESVkrkldssmpaaleaesekvskpaieRAKIVvsiqdkgglkqfRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPeatpaslemedndiievhtkkt
Low Complexity Region (SEG)
MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTKVGKNVGVDIRELEVVDCeeeeeeeeDWLPPPPKVMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT
Disordered region (IsUnstruct)
*********LEPLFDYRRVQPHNLVFFDDDDT**IPC***TKVGKNVGVDIREL***************************************************************************************RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKI************************
Disordered Region (DISOPRED)
******V**LEPLFDYRRVQPHNLVFFDDDDTPP**************************EEEEEEEDW*********************LRLKK**************************************************VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK*
Disordered Region (DISEMBL)
MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTKVGKNVGVDIRELEVV*************PPPPKVMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEES*********************KPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT
Disordered Region (DISPRO)
*********LEPLFDYRRVQPHNLVFFDDDDTPP*P**********************CEEEEEEEEDWLPPPPKVMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRK*********************ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTKVGKNVGVDIRELEVVDCEEEEEEEEDWLPPPPKVMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
P55853	91	Small ubiquitin-related m	yes	no	0.331	0.791	0.424	4e-06
Q6DK72	94	Small ubiquitin-related m	yes	no	0.322	0.744	0.394	1e-05
Q7SZ22	94	Small ubiquitin-related m	N/A	no	0.322	0.744	0.394	1e-05
Q9Z172	110	Small ubiquitin-related m	yes	no	0.322	0.636	0.380	2e-05
Q5XIF4	110	Small ubiquitin-related m	yes	no	0.322	0.636	0.380	3e-05
O13351	117	Ubiquitin-like protein pm	yes	no	0.368	0.683	0.345	3e-05
P55854	103	Small ubiquitin-related m	yes	no	0.322	0.679	0.380	3e-05
Q17QV3	104	Small ubiquitin-related m	yes	no	0.322	0.673	0.380	4e-05
Q5ZHQ1	94	Small ubiquitin-related m	yes	no	0.322	0.744	0.380	4e-05
P55852	100	Small ubiquitin-related m	no	no	0.414	0.9	0.296	4e-05

>sp|P55853|SUMO_CAEEL Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA 200
           E  KI V  QD   +  FRV       +L K YAD+  +   +L F FDG +I  + TP 
Sbjct: 13  EYIKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71

Query: 201 SLEMEDNDIIEVH 213
           +LEMED+D+IEV+
Sbjct: 72  TLEMEDDDVIEVY 84

Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex aos-1-uba-2 and linkage to the E2 enzyme ubc-9, and can be promoted by an E3 ligase such as gei-17. Required for embryonic development, fertility, vulval morphogenesis and inhibition of vulval cell fates.
Caenorhabditis elegans (taxid: 6239)

>sp|Q6DK72|SUMO3_XENTR Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y D+  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Xenopus tropicalis (taxid: 8364)

>sp|Q7SZ22|SUMO3_XENLA Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y D+  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex sae1-sae2 and linkage to the E2 enzyme ube2i.

Xenopus laevis (taxid: 8355)

>sp|Q9Z172|SUMO3_MOUSE Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Mus musculus (taxid: 10090)

>sp|Q5XIF4|SUMO3_RAT Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Rattus norvegicus (taxid: 10116)

>sp|O13351|PMT3_SCHPO Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt3 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)

Query: 132 SEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD 191
           S++  KP+ E   + V  QD   +  F++    +F +L K+Y  +      +L F  DG+
Sbjct: 25  SQQDVKPSTEHINLKVVGQDNNEVF-FKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGE 83

Query: 192 KIGPEATPASLEMEDNDIIEV 212
           +I P+ TPA L+MED D IE 
Sbjct: 84  RIRPDQTPAELDMEDGDQIEA 104

Required for chromosome segregation where it may be involved in microtubule assembly. Loss of smt3 leads to an increase in telomere length.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P55854|SUMO3_HUMAN Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Homo sapiens (taxid: 9606)

>sp|Q17QV3|SUMO3_BOVIN Small ubiquitin-related modifier 3 OS=Bos taurus GN=SUMO3 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I, and can be promoted by an E3 ligase such as PIAS1-4, RANBP2 or CBX4.

Bos taurus (taxid: 9913)

>sp|Q5ZHQ1|SUMO3_CHICK Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 21  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMED 79

Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 80  EDTIDVFQQQT 90

Ubiquitin-like protein which can be covalently attached to target lysines either as a monomer or as a lysine-linked polymer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Plays a role in a number of cellular processes such as nuclear transport, DNA replication and repair, mitosis and signal transduction. Covalent attachment to its substrates requires prior activation by the E1 complex SAE1-SAE2 and linkage to the E2 enzyme UBE2I.

Gallus gallus (taxid: 9031)

>sp|P55852|SUMO1_ARATH Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana GN=SUMO1 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 128 LEAESEKVSKPAIERAKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVF 186
           + A  E+  KP    A I + ++ + G + F R+    + ++L   Y D+ ++D  ++ F
Sbjct: 1   MSANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAF 60

Query: 187 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            FDG ++  E TP  L+MED D I+    +T
Sbjct: 61  LFDGRRLRAEQTPDELDMEDGDEIDAMLHQT 91

Ubiquitin-like protein which can be covalently attached to target lysines as a monomer. Does not seem to be involved in protein degradation and may function as an antagonist of ubiquitin in the degradation process. Required for the massive protein sumoylation in the nucleus induced by heat shock and controlled by SIZ1. Involved in the regulation of the heat stress transcription factor HSFA2 in acquired thermotolerance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225424099	218	PREDICTED: uncharacterized protein LOC10	0.944	0.940	0.613	2e-61
297737759	225	unnamed protein product [Vitis vinifera]	0.944	0.911	0.613	3e-61
255570681	229	conserved hypothetical protein [Ricinus	0.981	0.930	0.562	2e-55
388522569	216	unknown [Lotus japonicus]	0.972	0.976	0.504	5e-48
18408968	215	ubiquitin-related protein [Arabidopsis t	0.944	0.953	0.525	5e-48
297838571	216	hypothetical protein ARALYDRAFT_475936 [	0.940	0.944	0.515	9e-47
449434584	225	PREDICTED: uncharacterized protein LOC10	0.967	0.933	0.5	1e-45
351727641	218	uncharacterized protein LOC100500271 [Gl	0.958	0.954	0.479	2e-43
118485265	216	unknown [Populus trichocarpa]	0.949	0.953	0.528	1e-42
388521289	216	unknown [Medicago truncatula]	0.935	0.939	0.482	4e-41

>gi|225424099|ref|XP_002283125.1| PREDICTED: uncharacterized protein LOC100264466 [Vitis vinifera]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 163/220 (74%), Gaps = 15/220 (6%)

Query: 7   VDDLEPLFDYRRVQPHNLVFFDDDDTPPIP--CPKRTKVG-----KNVGVDIRELEVVDC 59
            ++LEPLFDY RVQP N V  DDDD+   P   PKR K+      KN  V     +V+DC
Sbjct: 5   TEELEPLFDYSRVQPFNFVPLDDDDSDSSPNLTPKRKKLSNSSEEKNENV----TQVIDC 60

Query: 60  EEEEEEEEDWLPPPPK--VMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVK 117
           +E EEE  DWLPPPPK  V VQ QL EDS +K+LRLKKQEL+ FA+SA DV+R VEES K
Sbjct: 61  KENEEE--DWLPPPPKLSVDVQNQLGEDSTLKQLRLKKQELLLFAESAKDVLRTVEESAK 118

Query: 118 RKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKV 177
           R+L SS+ +++E+ + + SKP  ERAKIV+SIQDK GLKQFR+Y DDKFERLFKMYADK+
Sbjct: 119 RELGSSLQSSVESVASQPSKPPCERAKIVISIQDKDGLKQFRIYMDDKFERLFKMYADKL 178

Query: 178 NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            LD ++L+FCFDGDKI P ATP  L MEDNDI+EVH K +
Sbjct: 179 KLDLKSLIFCFDGDKISPTATPDELGMEDNDIVEVHIKSS 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737759|emb|CBI26960.3| unnamed protein product [Vitis vinifera]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 135/220 (61%), Positives = 163/220 (74%), Gaps = 15/220 (6%)

Query: 7   VDDLEPLFDYRRVQPHNLVFFDDDDTPPIP--CPKRTKVG-----KNVGVDIRELEVVDC 59
            ++LEPLFDY RVQP N V  DDDD+   P   PKR K+      KN  V     +V+DC
Sbjct: 12  TEELEPLFDYSRVQPFNFVPLDDDDSDSSPNLTPKRKKLSNSSEEKNENVT----QVIDC 67

Query: 60  EEEEEEEEDWLPPPPK--VMVQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVK 117
           +E EEE  DWLPPPPK  V VQ QL EDS +K+LRLKKQEL+ FA+SA DV+R VEES K
Sbjct: 68  KENEEE--DWLPPPPKLSVDVQNQLGEDSTLKQLRLKKQELLLFAESAKDVLRTVEESAK 125

Query: 118 RKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKV 177
           R+L SS+ +++E+ + + SKP  ERAKIV+SIQDK GLKQFR+Y DDKFERLFKMYADK+
Sbjct: 126 RELGSSLQSSVESVASQPSKPPCERAKIVISIQDKDGLKQFRIYMDDKFERLFKMYADKL 185

Query: 178 NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            LD ++L+FCFDGDKI P ATP  L MEDNDI+EVH K +
Sbjct: 186 KLDLKSLIFCFDGDKISPTATPDELGMEDNDIVEVHIKSS 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570681|ref|XP_002526295.1| conserved hypothetical protein [Ricinus communis] gi|223534376|gb|EEF36084.1| conserved hypothetical protein [Ricinus communis]

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/233 (56%), Positives = 162/233 (69%), Gaps = 20/233 (8%)

Query: 1   MADLTEVDDLEPLFDYRRVQPHNLVFFDDD--DTPPIPCPKRTKVGKN----------VG 48
           MAD +E  +LEPLFDY+RVQP + +  DDD  DT P P PKR K  +N            
Sbjct: 1   MADNSE--ELEPLFDYKRVQPRDFICLDDDGSDTSPFPIPKRKKTFQNPKSVKVVDDDDD 58

Query: 49  VDIRELEVVDCEEEEEEEEDWLPPPPKVM--VQKQLVEDSAIKELRLKKQELVSFAKSAD 106
            ++R + + +C++++EE  DWLPPPPKV    Q +L EDS IKELRLKKQEL   AKS  
Sbjct: 59  DEVRVIGIENCKDKDEE--DWLPPPPKVSSDFQNRLGEDSMIKELRLKKQELEVLAKSGV 116

Query: 107 DVIRAVEESVKRKLDSSMPAALEAES--EKVSKPAIERAKIVVSIQDKGGLKQFRVYADD 164
           +V+RAVEESV+R L+SS+ A   +E+  E+ +K   ERAKIV+S Q K   KQFRVY DD
Sbjct: 117 NVLRAVEESVQRSLNSSVSANAASETVFEQPAKLPCERAKIVISFQGKEVSKQFRVYKDD 176

Query: 165 KFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           KFERLFK+YADKV +D +NL F FDGDKI P ATP SL MED+DIIEVH KK+
Sbjct: 177 KFERLFKVYADKVKVDIQNLAFSFDGDKISPTATPDSLGMEDDDIIEVHVKKS 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522569|gb|AFK49346.1| unknown [Lotus japonicus]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/216 (50%), Positives = 151/216 (69%), Gaps = 5/216 (2%)

Query: 4   LTEVDDLEPLFDYRRVQP-HNLVFFDDDDTPPIPCP-KRTKVGKNVGVDIRELEVVDCEE 61
           + E ++LEPLFDY RVQP +N V  DDD+   + C  K+ K  K V  + +E  V   E 
Sbjct: 2   MDEPEELEPLFDYSRVQPLNNFVCLDDDEDEDVTCAAKKRKSSKPVENEKKETNVKGVEV 61

Query: 62  EEEEEEDWLPPPPKVM--VQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRK 119
            + E++DWLPPPPKV+   Q+ + EDS +K+LRLKKQELVSFA+SA+D++++VEES   +
Sbjct: 62  VDIEDDDWLPPPPKVVSKAQRSIDEDSIVKKLRLKKQELVSFAESAEDLLKSVEESANLE 121

Query: 120 LDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNL 179
             +S  ++ ++ S+K  KP+ ERAKI++S+QDK G KQ R++ DD FER+ K YA+K+  
Sbjct: 122 SSNSCESSTDSVSDKAQKPS-ERAKILISVQDKDGTKQIRMFMDDTFERIVKTYAEKIKC 180

Query: 180 DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK 215
           D + +V  FDGDKI    TPASL MED+DIIEVH K
Sbjct: 181 DLKQIVLSFDGDKISLSETPASLGMEDDDIIEVHVK 216

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408968|ref|NP_564924.1| ubiquitin-related protein [Arabidopsis thaliana] gi|21554742|gb|AAM63677.1| unknown [Arabidopsis thaliana] gi|88193818|gb|ABD42998.1| At1g68185 [Arabidopsis thaliana] gi|332196640|gb|AEE34761.1| ubiquitin-related protein [Arabidopsis thaliana]

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 146/219 (66%), Gaps = 14/219 (6%)

Query: 6   EVDDLEPLFDYRRVQPHNLVFFDDDDTPP--IPCPKRTKVGKNVGV---DIRELEVVDCE 60
           E +DLEPLFDYRRVQP N V  DDDD      P PK+ K  + V     D++ +EV    
Sbjct: 4   EGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIPKKAKTSQTVEKLDDDVKVIEVTG-- 61

Query: 61  EEEEEEEDWLPPPPKVMV--QKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKR 118
                ++DWL PPPKV+    K  VEDS IK LR KK EL+SF K+  DV++ VEES KR
Sbjct: 62  -----DDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEESAKR 116

Query: 119 KLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVN 178
           +++ S   + E  ++  S+P  +RAKIV++IQDK G K  RV+AD+KFER+ K+Y DK  
Sbjct: 117 EVEESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERVIKLYTDKAK 176

Query: 179 LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           LD +NLVF FDGDKI P  TP+ L MED+D+IEVHTKKT
Sbjct: 177 LDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838571|ref|XP_002887167.1| hypothetical protein ARALYDRAFT_475936 [Arabidopsis lyrata subsp. lyrata] gi|297333008|gb|EFH63426.1| hypothetical protein ARALYDRAFT_475936 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 147/219 (67%), Gaps = 15/219 (6%)

Query: 6   EVDDLEPLFDYRRVQPHNLVFFDDDD---TPPIPCPKRTKVGKNVGV---DIRELEVVDC 59
           E +DLEPLFDYRRVQP N V  DDDD   +   P PK+ K  + V     D++ +EV   
Sbjct: 4   EGEDLEPLFDYRRVQPANFVCIDDDDDDDSSKTPVPKKAKTSQTVEKLDDDVKVIEVAG- 62

Query: 60  EEEEEEEEDWLPPPPKVMV--QKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEESVK 117
                 ++DWL PPPKV+    K+ VEDS IK LR KK EL+SF K+  DV++ VEES K
Sbjct: 63  ------DDDWLLPPPKVIFDKNKESVEDSTIKALRSKKMELMSFTKTVADVMQEVEESAK 116

Query: 118 RKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKV 177
           R+++ S     E  ++   +P  +RAKIV++IQ K G K FRV+AD+KFER+ K+Y DKV
Sbjct: 117 REVEESRNPPSEVAAQLPPEPTNDRAKIVITIQGKDGQKTFRVFADEKFERVIKLYTDKV 176

Query: 178 NLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            LD +NLVF FDGDKI P  TP+ L+MED+D+IEVHTK+
Sbjct: 177 KLDPQNLVFIFDGDKIDPSTTPSQLDMEDHDMIEVHTKQ 215

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434584|ref|XP_004135076.1| PREDICTED: uncharacterized protein LOC101214853 [Cucumis sativus]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 157/232 (67%), Gaps = 22/232 (9%)

Query: 1   MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDT----PPIPCPKRTKV-----GKNVGVDI 51
           MAD  E  + EPLFDY RVQP ++V  DD+D+     P P  KR K+       +V  + 
Sbjct: 1   MADSAE--EFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNP 58

Query: 52  RELEVVDCEEEEEEEEDWLPPPPKVMV--QKQLVEDSAIKELRLKKQELVSFAKSADDVI 109
           +E +V    E E++EEDWLPPPPKV+V  + + VEDS +KELRLKKQEL S A SA +++
Sbjct: 59  KEKQV----EIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLL 114

Query: 110 RAVEESVKRKLDSSMPAALEAESEKVSKPAI--ERAKIVVSIQD--KGGLKQFRVYADDK 165
           R VEES K  + ++    LE + + V  P    ERAKIV+S++D  K  LKQ+R++ DDK
Sbjct: 115 REVEESAKVDVGNTSMDPLEPDLD-VQTPVASKERAKIVISVRDSDKEELKQYRLFVDDK 173

Query: 166 FERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           FERLFK+YADK+ +D ++LVF FDGDK+GP+ TP  L MED+D+IEV+ K +
Sbjct: 174 FERLFKLYADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727641|ref|NP_001235632.1| uncharacterized protein LOC100500271 [Glycine max] gi|255629887|gb|ACU15294.1| unknown [Glycine max]

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/223 (47%), Positives = 150/223 (67%), Gaps = 15/223 (6%)

Query: 4   LTEVDDLEPLFDYRRVQPHNLVFFDDDDTP--PIPC--PKRTKVGKNVG---VDIRELEV 56
           + E ++LEPLFDY RVQP N +  DDD      + C   K+ K+ + VG    + + + V
Sbjct: 2   MDETEELEPLFDYSRVQPLNPIDLDDDLDDYEDVICVDSKKRKISQAVGNEKTNGKRVTV 61

Query: 57  VDCEEEEEEEEDWLPPPPKVM--VQKQLVEDSAIKELRLKKQELVSFAKSADDVIRAVEE 114
           VD E++     DWLPPPPK+    QK + EDS +K+LRLKKQEL SFA+SA ++++ VEE
Sbjct: 62  VDIEDD-----DWLPPPPKIASNAQKTIDEDSTLKKLRLKKQELASFAESAKELLKDVEE 116

Query: 115 SVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYA 174
           S K ++D+S+ +++    EK ++ + ERAKIVVS+QDK G KQ R++ DDKFER+ K YA
Sbjct: 117 SSKLEIDNSLQSSVVGVDEKSTEHS-ERAKIVVSVQDKDGTKQIRMFVDDKFERIVKTYA 175

Query: 175 DKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           +K+  + + +V  FDGDKI    TPASL MED+DII VH K +
Sbjct: 176 EKIKCNLKQIVLSFDGDKISSSETPASLGMEDDDIIGVHVKSS 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485265|gb|ABK94492.1| unknown [Populus trichocarpa]

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/227 (52%), Positives = 151/227 (66%), Gaps = 21/227 (9%)

Query: 1   MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDT----PPIPCPKRTKVGKN----VGVDIR 52
           MAD   V+DL+ LFDYRRVQP  ++  DDDD     PP+P PK+ K+ K+    VG D  
Sbjct: 1   MAD--SVEDLDSLFDYRRVQPIAILDEDDDDDEYDKPPVPSPKKRKISKHNVEIVGGDRE 58

Query: 53  ELEVVDCEEEEEEEEDWLPPPPKVMVQ--KQLVEDSAIKELRLKKQELVSFAKSADDVIR 110
             +V +      ++EDWL PPPK   +  KQ+ EDS IKELRL+KQEL +   ++ + + 
Sbjct: 59  ASQVTN------DDEDWLLPPPKDSSESPKQIDEDSTIKELRLRKQELKAL--TSKECLF 110

Query: 111 AVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLF 170
              ES  R+ DS + A LE+ +E+ SKP  ERAKIV+SIQDK  +KQFRVY D+KFERLF
Sbjct: 111 QYLESPNRQSDS-VQADLESGAEQPSKPHHERAKIVISIQDKDEVKQFRVYKDEKFERLF 169

Query: 171 KMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           K YADKV L  E+LVF FDGDKI   ATP SL M+D DIIEV  KK+
Sbjct: 170 KRYADKVKLGIESLVFMFDGDKINLTATPDSLGMDDEDIIEVLAKKS 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521289|gb|AFK48706.1| unknown [Medicago truncatula]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 145/230 (63%), Gaps = 27/230 (11%)

Query: 1   MADLTEVDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTK----------VGKNVGVD 50
           MAD TE  +LEPLFDY RVQP+ +   DD+D   +  PK+ K           GKN  V+
Sbjct: 1   MADETE--ELEPLFDYNRVQPNIVCLDDDEDDDVVAFPKKRKKNSKSQHVVENGKNTKVE 58

Query: 51  IRELEVVDCEEEEEEEEDWLPPPPKVM---VQKQLVEDSAIKELRLKKQELVSFAKSADD 107
              + VVD E++     DWLP PP+V     +K   EDS +K LRLKKQEL +FA+SA  
Sbjct: 59  T--VNVVDLEDD-----DWLPSPPRVTGKAHKKTDEEDSTLKNLRLKKQELAAFAESAKK 111

Query: 108 VIRAVEESVKRKLDSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFE 167
           ++  VE SV+ +  +S+       SEK SKP+ ERAKI++S+QDK   KQ R+Y DD+FE
Sbjct: 112 MLETVENSVEIENSNSVDDV----SEKTSKPS-ERAKILISVQDKDETKQIRMYMDDRFE 166

Query: 168 RLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           R+ K YA+K+  D + +V  FDGDKI    TPASL+MEDNDIIEVH K +
Sbjct: 167 RIIKTYAEKMKCDLKQIVLSFDGDKISSSQTPASLDMEDNDIIEVHVKSS 216

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:505006207	215	AT1G68185 "AT1G68185" [Arabido	0.958	0.967	0.523	5.6e-52
WB|WBGene00004888	91	smo-1 [Caenorhabditis elegans	0.345	0.824	0.407	1.2e-08
UNIPROTKB|P55853	91	smo-1 "Small ubiquitin-related	0.345	0.824	0.407	1.2e-08
ZFIN|ZDB-GENE-120215-155	94	sumo2a "SMT3 suppressor of mif	0.299	0.691	0.439	2.1e-08
UNIPROTKB|F1M2K3	94	F1M2K3 "Uncharacterized protei	0.414	0.957	0.340	2.8e-08
UNIPROTKB|J9P2X4	133	LOC100856530 "Uncharacterized	0.433	0.706	0.326	3.7e-08
UNIPROTKB|Q5ZJM9	95	SUMO2 "Small ubiquitin-related	0.405	0.926	0.337	4.9e-08
UNIPROTKB|G5E5Y5	95	SUMO2 "Small ubiquitin-related	0.414	0.947	0.340	4.9e-08
UNIPROTKB|P61955	95	SUMO2 "Small ubiquitin-related	0.405	0.926	0.337	4.9e-08
UNIPROTKB|E2RGN5	95	SUMO2 "Uncharacterized protein	0.405	0.926	0.337	4.9e-08

TAIR|locus:505006207 AT1G68185 "AT1G68185" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 113/216 (52%), Positives = 144/216 (66%)

Query:     6 EVDDLEPLFDYRRVQPHNLVFFDDDDTPP--IPCPKRTKVGKNVGVDIRELEVVDCXXXX 63
             E +DLEPLFDYRRVQP N V  DDDD      P PK+ K  + V     +++V++     
Sbjct:     4 EGEDLEPLFDYRRVQPANFVCIDDDDDDASVTPIPKKAKTSQTVEKLDDDVKVIEVTGDD 63

Query:    64 XXXXDWLPPPPKVMVQKQL--VEDSAIKELRLKKQELVSFAKSADDVIRAVEESVKRKLD 121
                 DWL PPPKV+  K    VEDS IK LR KK EL+SF K+  DV++ VEES KR+++
Sbjct:    64 ----DWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEESAKREVE 119

Query:   122 SSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ 181
              S   + E  ++  S+P  +RAKIV++IQDK G K  RV+AD+KFER+ K+Y DK  LD 
Sbjct:   120 ESRNPSSETAAQLPSEPTNDRAKIVITIQDKDGQKTLRVFADEKFERVIKLYTDKAKLDP 179

Query:   182 ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
             +NLVF FDGDKI P  TP+ L MED+D+IEVHTKKT
Sbjct:   180 QNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

WB|WBGene00004888 smo-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%)

Query:   141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA 200
             E  KI V  QD   +  FRV       +L K YAD+  +   +L F FDG +I  + TP 
Sbjct:    13 EYIKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71

Query:   201 SLEMEDNDIIEVHTKK 216
             +LEMED+D+IEV+ ++
Sbjct:    72 TLEMEDDDVIEVYQEQ 87

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040002 "collagen and cuticulin-based cuticle development" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0070194 "synaptonemal complex disassembly" evidence=IGI;IMP

GO:0034502 "protein localization to chromosome" evidence=IMP

UNIPROTKB|P55853 smo-1 "Small ubiquitin-related modifier" [Caenorhabditis elegans (taxid:6239)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%)

Query:   141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA 200
             E  KI V  QD   +  FRV       +L K YAD+  +   +L F FDG +I  + TP 
Sbjct:    13 EYIKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71

Query:   201 SLEMEDNDIIEVHTKK 216
             +LEMED+D+IEV+ ++
Sbjct:    72 TLEMEDDDVIEVYQEQ 87

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-120215-155 sumo2a "SMT3 suppressor of mif two 3 homolog 2a" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query:   147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
             VS QD G + QF++       +L K+Y D+  L ++ + F FDG+ I    TPA LEMED
Sbjct:    21 VSSQD-GSVVQFKIKKHAPLSKLMKVYCDRQGLTRKLIRFMFDGESIKETDTPALLEMED 79

Query:   207 NDIIEV 212
              D IEV
Sbjct:    80 EDAIEV 85

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1M2K3 F1M2K3 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 127 (49.8 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 31/91 (34%), Positives = 44/91 (48%)

Query:   127 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 186
             A E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F
Sbjct:     1 AKERAKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 59

Query:   187 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
              FDG  I    TPA LEMED D I+V  ++T
Sbjct:    60 RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 90

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|J9P2X4 LOC100856530 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 126 (49.4 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 31/95 (32%), Positives = 46/95 (48%)

Query:   123 SMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQE 182
             ++  A E   E V     +   + V+ QD G + QF++       +L K Y ++  L   
Sbjct:    38 ALAMADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMR 96

Query:   183 NLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
              + F FDG  I    TPA LEMED D I+V  ++T
Sbjct:    97 QIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 131

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5ZJM9 SUMO2 "Small ubiquitin-related modifier 2" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query:   129 EAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188
             E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F F
Sbjct:     4 EKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62

Query:   189 DGDKIGPEATPASLEMEDNDIIEVHTKKT 217
             DG  I    TPA LEMED D I+V  ++T
Sbjct:    63 DGQPINETDTPAQLEMEDEDTIDVFQQQT 91

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|G5E5Y5 SUMO2 "Small ubiquitin-related modifier 2" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 31/91 (34%), Positives = 44/91 (48%)

Query:   127 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 186
             A E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F
Sbjct:     2 ASERIKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60

Query:   187 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
              FDG  I    TPA LEMED D I+V  ++T
Sbjct:    61 RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P61955 SUMO2 "Small ubiquitin-related modifier 2" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query:   129 EAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188
             E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F F
Sbjct:     4 EKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62

Query:   189 DGDKIGPEATPASLEMEDNDIIEVHTKKT 217
             DG  I    TPA LEMED D I+V  ++T
Sbjct:    63 DGQPINETDTPAQLEMEDEDTIDVFQQQT 91

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|E2RGN5 SUMO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 4.9e-08, P = 4.9e-08
 Identities = 30/89 (33%), Positives = 43/89 (48%)

Query:   129 EAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188
             E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F F
Sbjct:     4 EKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62

Query:   189 DGDKIGPEATPASLEMEDNDIIEVHTKKT 217
             DG  I    TPA LEMED D I+V  ++T
Sbjct:    63 DGQPINETDTPAQLEMEDEDTIDVFQQQT 91

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G68185	ubiquitin-related; ubiquitin-related; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- protein modification process; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin (InterPro-IPR000626); Has 340 Blast hits to 340 proteins in 116 species- Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 60; Plants - 82; Viruses - 0; Other Eukaryotes - 52 (source- NCBI BLink). (215 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	SUMO5	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5); protein tag; Encodes a small ubiquitin-like modifier [...] (108 aa)							•		0.560

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd01763	87	cd01763, Sumo, Small ubiquitin-related modifier (S	3e-13
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	3e-10
COG5227	103	COG5227, SMT3, Ubiquitin-like protein (sentrin) [P	9e-09

>gnl|CDD|176359 cd01763, Sumo, Small ubiquitin-related modifier (SUMO)

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 143 AKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPAS 201
             I + ++ + G +  F++      ++L + Y  +  L   ++ F FDG +I    TP  
Sbjct: 10  EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDD 69

Query: 202 LEMEDNDIIEVHTKKT 217
           L MED D IEV  ++T
Sbjct: 70  LGMEDGDEIEVMLEQT 85

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases. Length = 87

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 145 IVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLD-QENLVFCFDGDKIGPEATPASL 202
           I + ++ K G +   +V       +L   Y  K  +   + +   FDG+++ P  T A  
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 203 EMEDNDIIEV 212
           ++ED D I+V
Sbjct: 61  DIEDGDTIDV 70

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

 Score = 51.1 bits (122), Expect = 9e-09
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 121 DSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLD 180
            S   +  +     + KP  +   + V  QD   L  F++     F++L   ++ +   +
Sbjct: 3   SSDSGSEFKTNENPLVKPITKHINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGKN 61

Query: 181 QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
             +L F FDG +I  + TP  L+MEDND IE  T++
Sbjct: 62  MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ 97

Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	99.93
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	99.87
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.84
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.81
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	98.91
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	98.63
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	98.62
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	98.55
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	98.47
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	98.44
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	98.41
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	98.41
PTZ00044	76	ubiquitin; Provisional	98.33
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	98.24
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	98.24
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	98.21
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.21
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	98.19
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	98.18
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	98.17
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	98.08
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	98.03
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	98.0
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	97.96
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	97.83
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	97.77
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.67
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.51
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	97.48
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	97.46
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	97.42
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	96.95
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	96.61
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	96.36
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	96.31
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	96.22
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	96.12
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	95.21
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	95.05
PLN02560	308	enoyl-CoA reductase	95.0
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	94.98
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	94.72
PRK08364	70	sulfur carrier protein ThiS; Provisional	94.35
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	93.23
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	93.17
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	92.78
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	91.55
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	89.7
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	89.23
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	88.88
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	88.06
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	86.92
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	86.5
PF03671	76	Ufm1: Ubiquitin fold modifier 1 protein; InterPro:	85.55
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	85.42
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	85.28
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	85.19
PRK06437	67	hypothetical protein; Provisional	84.32
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	83.89
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	83.2
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	83.18
PRK07440	70	hypothetical protein; Provisional	83.18
cd01766	82	Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-f	81.54
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	81.39
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	81.12

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=6.3e-26  Score=176.56  Aligned_cols=76  Identities=34%  Similarity=0.590  Sum_probs=73.5

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ..||+|+|.++++. ++|+|+++|+|.|||++||++.|++.++|||+|||.||..++||.+|+|||||+|+|+..|.
T Consensus        18 ~~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~   94 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQT   94 (99)
T ss_pred             cceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecc
Confidence            68999999998886 69999999999999999999999999999999999999999999999999999999999984

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.2e-22  Score=156.87  Aligned_cols=75  Identities=31%  Similarity=0.565  Sum_probs=72.6

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..||+|+|.+|++. +.|+||++|+|+|||++||++.|..++++||+|||.||..++||.+|+|||||+|+|+.+|
T Consensus        22 t~hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQ   97 (103)
T COG5227          22 TKHINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQ   97 (103)
T ss_pred             ccccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHH
Confidence            67999999999985 8999999999999999999999999999999999999999999999999999999999887

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.84  E-value=1.9e-20  Score=140.73  Aligned_cols=78  Identities=28%  Similarity=0.491  Sum_probs=74.4

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      +.+.+|+|+|++.+|. +.|+|+++++|++||++||++.|++++++||+|+|.+|.++.||.+|+|+|||+|+|+++|.
T Consensus         7 ~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~   85 (87)
T cd01763           7 EISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQT   85 (87)
T ss_pred             CCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecc
Confidence            4789999999999886 79999999999999999999999999999999999999999999999999999999999873

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.81  E-value=8.1e-20  Score=130.71  Aligned_cols=70  Identities=29%  Similarity=0.605  Sum_probs=65.1

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |+|+|++++|. +.|+|+++++|++||++||++.|++. ++++|+|||++|++++||+++||+|||+|+|++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            78999999986 79999999999999999999999999 999999999999999999999999999999985

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=98.91  E-value=7.4e-09  Score=73.83  Aligned_cols=71  Identities=14%  Similarity=0.318  Sum_probs=65.8

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.++|.++.+.+.|...++++.|++++..||+|+|..+..+.|..++++++|++|.+..++
T Consensus         2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~   73 (76)
T cd01806           2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLAL   73 (76)
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEc
Confidence            5677777775 7899999999999999999999999999999999999999999999999999999998865

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=98.63  E-value=1.9e-07  Score=65.73  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=61.4

Q ss_pred             Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          153 GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       153 dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      +|. +.+.|..+++...|.+..++..|++++.++|+|+|+.|..+.|-.++|+.+|++|.++++|+
T Consensus         4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    4 SGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             TSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            454 78999999999999999999999999999999999999999999999999999999999874

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=98.62  E-value=2.1e-07  Score=65.81  Aligned_cols=70  Identities=17%  Similarity=0.257  Sum_probs=63.4

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |+|+|...+....+.+.++.+...|+...+++.|++++..+++|+|..+..+.|..++|+.+|++|.++.
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            5777777643467999999999999999999999999999999999999999999999999999998864

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=98.55  E-value=4.2e-07  Score=64.08  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=64.1

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |+|.|...+|. +.+.+.++.+...|...++++.|++++..+++|+|..+..+.|..++|+.+|.+|.+..
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~   71 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK   71 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence            46777777775 68999999999999999999999999999999999999999999999999999998764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=98.47  E-value=9.3e-07  Score=63.91  Aligned_cols=71  Identities=13%  Similarity=0.270  Sum_probs=64.1

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....+++.|++....+++|+|+.+..+.|..++++.+|++|.++..+
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            3555555665 6899999999999999999999999999999999999999999999999999999998765

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=98.44  E-value=1.3e-06  Score=62.94  Aligned_cols=71  Identities=14%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCC--CCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.+..+++...|...++++.|+  +++..+++|+|..|..+.|-.++|+.+|++|.+++++
T Consensus         2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            3555556665 679999999999999999999999  9999999999999999999999999999999999876

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>smart00213 UBQ Ubiquitin homologues

Probab=98.41  E-value=1.1e-06  Score=59.93  Aligned_cols=63  Identities=16%  Similarity=0.270  Sum_probs=56.8

Q ss_pred             EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCc
Q 027888          146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDND  208 (217)
Q Consensus       146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGD  208 (217)
                      .|.|+..++...+.|..+++...|...++.+.|++++.++++|+|..|..+.|..++|+.+|+
T Consensus         2 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        2 ELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             EEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            456666564578999999999999999999999999999999999999999999999999985

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01803 Ubiquitin Ubiquitin

Probab=98.41  E-value=1.7e-06  Score=61.64  Aligned_cols=71  Identities=13%  Similarity=0.221  Sum_probs=64.6

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.+.++.+...|...++++.|++++..+|+|+|..+..+.|-.++++.+|++|.+..+.
T Consensus         2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~   73 (76)
T cd01803           2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (76)
T ss_pred             EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence            4666676765 6899999999999999999999999999999999999999999999999999999998764

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>PTZ00044 ubiquitin; Provisional

Probab=98.33  E-value=3.1e-06  Score=60.88  Aligned_cols=70  Identities=11%  Similarity=0.266  Sum_probs=63.9

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|+..+|. +.+.+.++++...|....+++.|+++...+++|+|..+..+.|-.++++.+|.+|.+.+.
T Consensus         2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044          2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence            4566666765 689999999999999999999999999999999999999999999999999999999875

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=98.24  E-value=5.1e-06  Score=59.33  Aligned_cols=66  Identities=15%  Similarity=0.278  Sum_probs=60.0

Q ss_pred             EEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          149 IQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       149 V~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |..-+|. +.+.+.++++...|....+++.|++....+++|.|..|..+.|..++++.+|.+|.+..
T Consensus         3 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~   69 (70)
T cd01798           3 VRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR   69 (70)
T ss_pred             EEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            4444554 68999999999999999999999999999999999999999999999999999998764

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=98.24  E-value=6.4e-06  Score=59.05  Aligned_cols=69  Identities=16%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             EEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          146 VVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       146 tIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +|.|....|...+.|.++.+...|....+++.|++...+++.|.|..|..+.|-.++|+++|.+|.+..
T Consensus         2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~   70 (71)
T cd01808           2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI   70 (71)
T ss_pred             EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence            455556566557999999999999999999999999999999999999999999999999999998875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=98.21  E-value=8.8e-06  Score=59.83  Aligned_cols=70  Identities=20%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +.|.|.+..|. +.+.+.++.+...|....+++.|++++..||.|.|..+..+.|-.+.|+.+|.+|..+.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            67888887665 67899999999999999999999999999999999999999999999999999998874

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.21  E-value=7.7e-06  Score=56.32  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=58.8

Q ss_pred             EeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          150 QDKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       150 ~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ...+| ...+.+..++++..|...++++.|++.+.++|+|+|..+..+.|..++++.+|+.|.|+.
T Consensus         3 ~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           3 KTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             EccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            33444 468999999999999999999999999999999999999999999999999999999875

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=98.19  E-value=1.3e-05  Score=59.09  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ++|.|....|. ..+.|.++.+...|.+..+++.|+++...||.|.|..+..+ |-.++|+++|++|.++..+
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~   73 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV   73 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence            46777776665 68999999999999999999999999999999999999988 9999999999999998764

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=98.18  E-value=8.6e-06  Score=59.97  Aligned_cols=72  Identities=8%  Similarity=0.017  Sum_probs=65.2

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEE--EECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVF--CFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF--~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|...+|. +.+.|.++.+...|....+++.|++++..||  .|+|..|..+.|-.++|+.+|++|.+++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~   77 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN   77 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence            67777777665 6789999999999999999999999999999  889999999999999999999999998873

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=98.17  E-value=9.1e-06  Score=58.80  Aligned_cols=68  Identities=9%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             EEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          148 SIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       148 kV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|....|. ..+.|.++.+...|....++..|++....+++|+|+.|..+.|..++|+.+|++|.++..
T Consensus         2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810           2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence            45566665 689999999999999999999999999999999999999999999999999999998865

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=98.08  E-value=2.3e-05  Score=56.70  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             EEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       147 IkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      |.|+.. ....+.|.++++.+.|....+++.|++....+++|.|+.|..+.|..++++.+|.+|.+...
T Consensus         3 i~vk~~-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01793           3 LFVRAQ-NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGR   70 (74)
T ss_pred             EEEECC-CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence            445543 34689999999999999999999999999999999999999999999999999999998764

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=98.03  E-value=2.2e-05  Score=58.16  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             EEEEEeCCce--EEEE-EcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL--KQFR-VYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~--v~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|..-+|.  +.+. +.++.+.+.|....+++.|++....|++|.|+.+..+.|-.++|+.+|++|.+++++
T Consensus         2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~   75 (78)
T cd01797           2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQ   75 (78)
T ss_pred             EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            3555555664  3574 789999999999999999999999999999999999999999999999999999876

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=98.00  E-value=4.1e-05  Score=59.79  Aligned_cols=74  Identities=7%  Similarity=0.038  Sum_probs=67.0

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ...+.|.|+..+|. +.+.|.++++...|....+++.|++....+++|.|+.|..+.|-.++++.+|++|.+.+.
T Consensus        25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~   99 (103)
T cd01802          25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLA   99 (103)
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence            34577777777775 689999999999999999999999999999999999999999999999999999999865

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=97.96  E-value=3.5e-05  Score=55.99  Aligned_cols=67  Identities=13%  Similarity=0.209  Sum_probs=61.7

Q ss_pred             EEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          148 SIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       148 kV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +|+..+|. +.+.|.++++...|...-+++.|++....+++|.|+.+..+.|..+.++.+|.+|.|.+
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            55666665 78999999999999999999999999999999999999999999999999999999976

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=97.83  E-value=8.2e-05  Score=53.75  Aligned_cols=59  Identities=12%  Similarity=0.207  Sum_probs=54.0

Q ss_pred             eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEE
Q 027888          155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVH  213 (217)
Q Consensus       155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~  213 (217)
                      .+.+.|.++.+.+.|....+++.|++....+++|+|+.|..+ .|-+++|+.+|++|-+.
T Consensus        11 ~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          11 TFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             EEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            468999999999999999999999999999999999999876 57789999999998764

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=97.77  E-value=0.00011  Score=53.60  Aligned_cols=61  Identities=15%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.+.+.++++...|........|++++..+++|.|..+..+.|-.++++.+|++|.++.+.
T Consensus        10 ~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~   70 (76)
T cd01800          10 LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE   70 (76)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence            6799999999999999999999999999999999999999999999999999999998764

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.67  E-value=0.00013  Score=54.71  Aligned_cols=71  Identities=14%  Similarity=0.359  Sum_probs=45.8

Q ss_pred             CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC---Cccc--CCCCCccccCCCCCcEEEEE
Q 027888          143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD---GDKI--GPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD---G~rI--~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ..+.|+|++++|...+.+.++.++..|++..++.++++..++.++.+   +..|  ..+.|..+|||..||+|-+.
T Consensus         3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            56889999999988899999999999999999999999888877553   3345  46889999999999998653

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.51  E-value=0.00059  Score=42.91  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=56.2

Q ss_pred             Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          153 GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       153 dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ++. +.+.+...++++.|+...+.++|.+++.++|+++|..+....+....++.+|+.|.+..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            443 68889999999999999999999999999999999999998888899999999998864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=97.48  E-value=0.00038  Score=65.71  Aligned_cols=71  Identities=10%  Similarity=0.187  Sum_probs=63.0

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcC---CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVN---LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~g---l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +|.|+.-.|. +.+.|..+.+...|+...+...|   ++....+|+|.|+.|..+.|-.++++.+|++|-+++.+
T Consensus         2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            4555555554 67899999999999999999998   88999999999999999999999999999999999875

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=97.46  E-value=0.00083  Score=49.24  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=61.5

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccCCCCCccccCCCCCcEEEEE
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      |+|.|...+....+.+..++++..|.+.-++..|+++...+++|   .|..+..+.|-.++++.+|+.|-++
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            45666666666789999999999999999999999999999996   8999999999999999999999876

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=97.42  E-value=0.0006  Score=50.31  Aligned_cols=60  Identities=12%  Similarity=0.001  Sum_probs=54.7

Q ss_pred             ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC-CCCCccccCCC-CCcEEEEEe
Q 027888          154 GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG-PEATPASLEME-DNDIIEVHT  214 (217)
Q Consensus       154 g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~-~~~TP~sLgME-DGDiIDV~~  214 (217)
                      +.+.+.+.++.+.+.|...-+.+.|+++...|+ |+|.++. .+.|-.++|++ +||++-+++
T Consensus        13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799          13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            457899999999999999999999999999999 9999996 66899999999 889998775

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=96.95  E-value=0.002  Score=62.66  Aligned_cols=74  Identities=16%  Similarity=0.272  Sum_probs=69.4

Q ss_pred             CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..|.|+|.+.+....|.|..+....-|.+.-+.+++++.+.++++|.|+.|.+.+|-...|+.||=+|.+.++.
T Consensus        14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~   87 (493)
T KOG0010|consen   14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS   87 (493)
T ss_pred             ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence            56889999888777899999999999999999999999999999999999999999999999999999988863

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=96.61  E-value=0.022  Score=42.64  Aligned_cols=70  Identities=20%  Similarity=0.221  Sum_probs=57.1

Q ss_pred             EEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEE-EECCcc-----c-CCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVF-CFDGDK-----I-GPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF-~FDG~r-----I-~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |+|.|.+... . ...++.+..+...|...-....|+++...|+ +|+|..     + .+..|-.+++++||.+|.|.-
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD   80 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID   80 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence            4555555432 2 5788999999999999999999999999999 588883     4 467789999999999998863

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=96.36  E-value=0.017  Score=43.62  Aligned_cols=69  Identities=6%  Similarity=0.091  Sum_probs=58.8

Q ss_pred             EEEEEEeCCce-EEEEE--cCCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCCCCccccC--CCCCcEEEEE
Q 027888          145 IVVSIQDKGGL-KQFRV--YADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPEATPASLE--MEDNDIIEVH  213 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrI--k~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~~TP~sLg--MEDGDiIDV~  213 (217)
                      |+|.|.+.++. ..|.|  ..+.+...|.+.-++..+  .++...|+.|.|+-|..++|-.+..  +.+|-+|...
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV   77 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV   77 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence            78889887775 35655  899999999999998875  3469999999999999999999996  9999988653

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=96.31  E-value=0.0091  Score=44.79  Aligned_cols=53  Identities=19%  Similarity=0.247  Sum_probs=46.7

Q ss_pred             CChHHHHHHHHHhhc--CC-CCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          163 DDKFERLFKMYADKV--NL-DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       163 tT~L~KLf~aYae~~--gl-~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +++...|....+++.  |+ +++..|+.|.|+.+..+.|-.+.||.+|.+|.+..+
T Consensus        20 ~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          20 GYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             cCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence            467788999999996  46 489999999999999999999999999999988753

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=96.22  E-value=0.029  Score=41.71  Aligned_cols=70  Identities=16%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             EEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC----Cccc----CCCCCccccCCCCCcEEEEE
Q 027888          145 IVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD----GDKI----GPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       145 ItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD----G~rI----~~~~TP~sLgMEDGDiIDV~  213 (217)
                      |+|.|.+...   ....++..+.++..|...-...+|++++.+++.+-    |..+    .+..|-.++|+.||++|.|.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            6778877665   46899999999999999999999999999888875    3333    35778899999999999986


Q ss_pred             e
Q 027888          214 T  214 (217)
Q Consensus       214 ~  214 (217)
                      -
T Consensus        82 D   82 (87)
T PF14560_consen   82 D   82 (87)
T ss_dssp             E
T ss_pred             e
Confidence            3

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.12  E-value=0.0092  Score=43.79  Aligned_cols=66  Identities=14%  Similarity=0.317  Sum_probs=59.3

Q ss_pred             EEEEeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888          147 VSIQDKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       147 IkV~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV  212 (217)
                      |+|+.-.| ++.+-|-++++.+++.+..-++.|+++..-|+.|-|.....+.|+++..++-|-++..
T Consensus         3 iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHl   69 (70)
T KOG0005|consen    3 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHL   69 (70)
T ss_pred             eeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEee
Confidence            55555444 5899999999999999999999999999999999999999999999999999988753

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=95.21  E-value=0.048  Score=39.72  Aligned_cols=61  Identities=10%  Similarity=0.086  Sum_probs=42.5

Q ss_pred             eCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          151 DKGG-LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       151 ~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      ..++ ...++|.+.++|..+.+.-|+++|++.....+.|++..|..+.+---.||-+|-..+
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLe   64 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLE   64 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEe
Confidence            3454 478999999999999999999999999999999999999888877777777776554

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=95.05  E-value=0.09  Score=38.33  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=44.3

Q ss_pred             cCCChHHHHHHHHHhhcCC-CCcceEEE--ECCcccCCCCCccccCCCCCcEEEE
Q 027888          161 YADDKFERLFKMYADKVNL-DQENLVFC--FDGDKIGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       161 k~tT~L~KLf~aYae~~gl-~~~slrF~--FDG~rI~~~~TP~sLgMEDGDiIDV  212 (217)
                      ..+.+...|..+++++.+. +++..|+.  +.|..|..+.|-.++|+.+|.+|.|
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            4678899999999998764 67776665  7899999999999999999998876

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PLN02560 enoyl-CoA reductase

Probab=95.00  E-value=0.092  Score=48.39  Aligned_cols=68  Identities=10%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             EEEEEeCCce-E---EEEEcCCChHHHHHHHHHhhcCC-CCcceEEEE---CCc----ccCCCCCccccCCCCCcEEEEE
Q 027888          146 VVSIQDKGGL-K---QFRVYADDKFERLFKMYADKVNL-DQENLVFCF---DGD----KIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       146 tIkV~~qdg~-v---~FrIk~tT~L~KLf~aYae~~gl-~~~slrF~F---DG~----rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      +|.|...+|. +   .+.+.++++.+.|.+.++++.+. +++..|+.+   +|.    .+..+.|-.++|+.+|.+|.|.
T Consensus         2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~k   81 (308)
T PLN02560          2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFK   81 (308)
T ss_pred             EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEE
Confidence            3455565554 4   58899999999999999999986 789999998   343    6778889999999999998763

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=94.98  E-value=0.057  Score=39.62  Aligned_cols=69  Identities=17%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             cEEEEEEeCC-ceEEEEEcCCChHHHHHHHHHhhcCCCC---c---ceEEE-ECCcccCCCCCccccCCCCCcEEEE
Q 027888          144 KIVVSIQDKG-GLKQFRVYADDKFERLFKMYADKVNLDQ---E---NLVFC-FDGDKIGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       144 kItIkV~~qd-g~v~FrIk~tT~L~KLf~aYae~~gl~~---~---slrF~-FDG~rI~~~~TP~sLgMEDGDiIDV  212 (217)
                      +|.|.|...+ ..+-+.+-.+.|+..|+..-.+..+.+.   .   .++|. -+|..|.++.|-.++|+.|||++..
T Consensus         2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            5778888766 4588999999999999999999888743   2   36666 6899999999999999999999864

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=94.72  E-value=0.098  Score=42.24  Aligned_cols=66  Identities=12%  Similarity=0.027  Sum_probs=56.1

Q ss_pred             CcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHhhcC-------CCCcceEEEECCcccCCCCCccccCCCCCc
Q 027888          143 AKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYADKVN-------LDQENLVFCFDGDKIGPEATPASLEMEDND  208 (217)
Q Consensus       143 ~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae~~g-------l~~~slrF~FDG~rI~~~~TP~sLgMEDGD  208 (217)
                      +.|.|+++-.+|. + -|++.++++...|...-.+..+       .+.+.++|+|.|+.|..+.|-.++++-=||
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~   77 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGD   77 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccc
Confidence            5688999988886 7 7999999999999999986664       348999999999999999999999944443

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=94.35  E-value=0.34  Score=34.98  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=47.8

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |+|++.+......+.+...+++..|.+..    +++...+....||+.+.     .+--+.+||.|+++.
T Consensus         5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~   65 (70)
T PRK08364          5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIP   65 (70)
T ss_pred             EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEc
Confidence            67777666545677788888888887554    78888899999999994     455699999999874

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=93.23  E-value=0.82  Score=33.12  Aligned_cols=72  Identities=15%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcc-eEEE--ECCcccCCCC--CccccCCCCCcEEEE
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQEN-LVFC--FDGDKIGPEA--TPASLEMEDNDIIEV  212 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~s-lrF~--FDG~rI~~~~--TP~sLgMEDGDiIDV  212 (217)
                      +...+.|.|+-.+|. +.-+..++++++.|+..-....+.+... ++|.  |-...|...+  |-.++|+-.+..|-|
T Consensus         3 ~~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    3 ESDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             TSSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            567789999999986 7888889999999998777666666554 7775  5567777654  999999988887765

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=93.17  E-value=0.26  Score=46.35  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=62.7

Q ss_pred             cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      +|+||-..+. .+.+.|++++++.-++..-+.-.|  .+.....++|+|+.|....|..+.++.+++.|-|+++|+
T Consensus         2 ~lt~KtL~q~-~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    2 KLTVKTLKQQ-TFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             eeEeeeccCc-eeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            3455544222 368999999999999999999999  567999999999999999999999999999999999874

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=92.78  E-value=1.2  Score=35.47  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             CcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHhhcCC-------CCcceEEEECCcccCCCCCccccCCCCCcE
Q 027888          143 AKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYADKVNL-------DQENLVFCFDGDKIGPEATPASLEMEDNDI  209 (217)
Q Consensus       143 ~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae~~gl-------~~~slrF~FDG~rI~~~~TP~sLgMEDGDi  209 (217)
                      +.|.|+++--+|. + .|...++++...|.+.......-       +++.+|++|.|+-|..+.|-.++.+--|+.
T Consensus         1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~   76 (111)
T PF13881_consen    1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGET   76 (111)
T ss_dssp             TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSE
T ss_pred             CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCC
Confidence            3688999888887 5 79999999999999888765422       358899999999999999999999999996

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=91.55  E-value=0.072  Score=43.20  Aligned_cols=62  Identities=15%  Similarity=0.249  Sum_probs=57.3

Q ss_pred             CceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          153 GGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       153 dg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +..+++.+-++.+...|......+-|+++...++.|+|..+.+..|-.+.||.-.|+|.++.
T Consensus        10 GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~   71 (128)
T KOG0003|consen   10 GKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL   71 (128)
T ss_pred             CceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhH
Confidence            44578999999999999999999999999999999999999999999999999999987654

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=89.70  E-value=2.6  Score=30.24  Aligned_cols=51  Identities=22%  Similarity=0.413  Sum_probs=43.3

Q ss_pred             cEEEEEEeCCceEE-EEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888          144 KIVVSIQDKGGLKQ-FRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKIG  194 (217)
Q Consensus       144 kItIkV~~qdg~v~-FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~  194 (217)
                      .|.|++...++... +.+.....|..|...-++++|.....+++.|   +|..|.
T Consensus         1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~   55 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVT   55 (84)
T ss_dssp             SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEE
T ss_pred             CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEE
Confidence            37788888887665 9999999999999999999999999999999   454443

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=89.23  E-value=2.1  Score=30.71  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD  189 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD  189 (217)
                      |+|++...+....|++.+..+|..|...-++++++....+++.|.
T Consensus         2 ~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        2 VDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             ccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            567777733336899999999999999999999998888999983

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=88.88  E-value=1.7  Score=34.88  Aligned_cols=62  Identities=18%  Similarity=0.205  Sum_probs=55.7

Q ss_pred             ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCC-CCCccccCCCCCcEEEEEec
Q 027888          154 GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGP-EATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       154 g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~-~~TP~sLgMEDGDiIDV~~k  215 (217)
                      |++...|.+++++.-|...-.+++++++..=+++|+|+.|.+ ..|-.++|+-.|-+|-+.+.
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            457888999999999999999999999999999999998886 56889999999999988764

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=88.06  E-value=3  Score=32.17  Aligned_cols=50  Identities=24%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC
Q 027888          144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG  194 (217)
Q Consensus       144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~  194 (217)
                      +|+|+|..++..+.++|.++..|..|.+.-.+++|+. +.|++.|  +|..+.
T Consensus         2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDEGD~it   53 (86)
T cd06408           2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDDGDMIT   53 (86)
T ss_pred             cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcCCCCcc
Confidence            6889999877778999999999999999999999995 6777777  454443

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=86.92  E-value=2.7  Score=29.88  Aligned_cols=50  Identities=28%  Similarity=0.451  Sum_probs=40.9

Q ss_pred             EEEEEEeCCceEEEEEc-CCChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888          145 IVVSIQDKGGLKQFRVY-ADDKFERLFKMYADKVNLDQENLVFCF---DGDKIG  194 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk-~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~  194 (217)
                      |+|++...++...|.+. ....|..|...-+++++.....+++.|   +|..|.
T Consensus         1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~   54 (81)
T cd05992           1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVT   54 (81)
T ss_pred             CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEE
Confidence            46777777666789999 999999999999999999878888888   455443

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=86.50  E-value=3.1  Score=29.51  Aligned_cols=54  Identities=7%  Similarity=0.161  Sum_probs=43.5

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCC----CCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          156 KQFRVYADDKFERLFKMYADKVNL----DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl----~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..+.+...+++..|++..+.+++-    ....+++..||+.+.     .+.-+.+||.|.++.
T Consensus        18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p   75 (80)
T cd00754          18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP   75 (80)
T ss_pred             EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC
Confidence            466666678999999999988753    457889999999998     344599999999864

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=85.55  E-value=2.3  Score=32.22  Aligned_cols=68  Identities=18%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             cEEEEEEe-CC-c-e-EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          144 KIVVSIQD-KG-G-L-KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       144 kItIkV~~-qd-g-~-v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      +++.++.- .+ . . ..|.|-..+||..+.+.-|+.++++. .+....-||.-|++.||..+.=|+-|-.+.
T Consensus         2 kvtfKI~ltsDp~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLr   74 (76)
T PF03671_consen    2 KVTFKITLTSDPKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELR   74 (76)
T ss_dssp             EEEEEEEESTSSTS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEE
T ss_pred             cEEEEEEEccCCCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEee
Confidence            45555542 22 2 2 47999999999999999999999987 555666689999999999887776666543

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=85.42  E-value=2.3  Score=40.53  Aligned_cols=50  Identities=18%  Similarity=0.282  Sum_probs=45.6

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCcc--ccCCC
Q 027888          156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA--SLEME  205 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~--sLgME  205 (217)
                      +.+.|+-+|.+..|.+..|.+.|++...++.+|-|+.|+.+-|..  +|+..
T Consensus        16 l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qq   67 (446)
T KOG0006|consen   16 LPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQ   67 (446)
T ss_pred             eeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeeccccccc
Confidence            578999999999999999999999999999999999999999988  55543

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=85.28  E-value=9.8  Score=28.66  Aligned_cols=71  Identities=8%  Similarity=0.139  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC--cccC--------CCCCccccCCCCCcEE
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG--DKIG--------PEATPASLEMEDNDII  210 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG--~rI~--------~~~TP~sLgMEDGDiI  210 (217)
                      ...++|.|+-.+|. +.-+...+++++.|+..... .+..+..+++..+=  +.+.        .+.|-+++||....++
T Consensus         2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L   80 (85)
T cd01774           2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL   80 (85)
T ss_pred             CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence            34678888888986 78888899999999987743 45556777777643  4554        3679999999988877


Q ss_pred             EEE
Q 027888          211 EVH  213 (217)
Q Consensus       211 DV~  213 (217)
                      -|.
T Consensus        81 ~V~   83 (85)
T cd01774          81 FVQ   83 (85)
T ss_pred             EEe
Confidence            664

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=85.19  E-value=3.6  Score=30.96  Aligned_cols=50  Identities=18%  Similarity=0.192  Sum_probs=41.2

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE---CCcccC
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF---DGDKIG  194 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F---DG~rI~  194 (217)
                      ++||+...+..+.|++.++..|..|...-++++++.. +.|.+.|   +|+.+.
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~   54 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVL   54 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEE
Confidence            4677777665689999999999999999999999976 8999999   455443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>PRK06437 hypothetical protein; Provisional

Probab=84.32  E-value=6.8  Score=28.11  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=41.4

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..+.+...+++..|.+.    +|++.+.+....||..|.     .+--+.+||.|+++.
T Consensus        13 ~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~   62 (67)
T PRK06437         13 KTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE   62 (67)
T ss_pred             eEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence            56777888888888754    588999999999999996     566789999999874

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=83.89  E-value=4.4  Score=30.88  Aligned_cols=48  Identities=10%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             EEEEEEeCCceEEEEEcC--CChHHHHHHHHHhhcCCCCcceEEEE---CCcccC
Q 027888          145 IVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIG  194 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~--tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~  194 (217)
                      |+|++...+..+.|++.+  +..+..|...-+.+++++  .|.+.|   +|+.+.
T Consensus         1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKYlDde~e~v~   53 (81)
T cd06396           1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKYVDEENEEVS   53 (81)
T ss_pred             CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEEEcCCCCEEE
Confidence            578888777778999999  889999999999999999  788777   566554

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=83.20  E-value=3.8  Score=31.25  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=40.2

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG  190 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG  190 (217)
                      .+|+|..+. .|.++|.+.-+|..|.+.-+++.+++.+.+++.|.-
T Consensus         3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd   47 (80)
T cd06406           3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS   47 (80)
T ss_pred             eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence            467777776 789999999999999999999999999999999953

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=83.18  E-value=3.4  Score=31.73  Aligned_cols=49  Identities=18%  Similarity=0.412  Sum_probs=41.0

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC---cceEEEE---CCcccC
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---ENLVFCF---DGDKIG  194 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~---~slrF~F---DG~rI~  194 (217)
                      ..|+++..|. +.|++.++..|..|+..-++++|.+.   +.+.+.|   +|+.+.
T Consensus         2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~Vl   57 (86)
T cd06409           2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVL   57 (86)
T ss_pred             cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEE
Confidence            3567788886 58999999999999999999999986   6899998   566553

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PRK07440 hypothetical protein; Provisional

Probab=83.18  E-value=7.1  Score=28.29  Aligned_cols=63  Identities=10%  Similarity=0.244  Sum_probs=45.1

Q ss_pred             CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..|+|+|-++    .+.+....++..|..    .+++++..+..-+||+-|..++= .+.-+.+||.|+++.
T Consensus         3 ~~m~i~vNG~----~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w-~~~~L~~gD~IEIv~   65 (70)
T PRK07440          3 NPITLQVNGE----TRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFW-EQTQVQPGDRLEIVT   65 (70)
T ss_pred             CceEEEECCE----EEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHc-CceecCCCCEEEEEE
Confidence            3566665432    355566677777664    67889999999999999974332 344599999999874

>cd01766 Ufm1 Urm1-like ubiquitin domain

Probab=81.54  E-value=7.6  Score=29.65  Aligned_cols=59  Identities=17%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          156 KQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..++|-..+||.-+.+.-|+.++++. .+-...-||.-|++.+|....=|..|-.+.+.-
T Consensus        18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliP   77 (82)
T cd01766          18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIP   77 (82)
T ss_pred             eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecc
Confidence            46799999999999999999999987 455666699999999999999999988776553

Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=81.39  E-value=13  Score=27.06  Aligned_cols=70  Identities=10%  Similarity=0.152  Sum_probs=52.0

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEE--ECCcccCC---CCCccccCCCCCcEEEE
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFC--FDGDKIGP---EATPASLEMEDNDIIEV  212 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~--FDG~rI~~---~~TP~sLgMEDGDiIDV  212 (217)
                      ...+|.|+-.+|. +.-+...+++++.|++......+.....+.|.  |-.+.+..   +.|-.++|+--+.++-|
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            4567888888886 78888999999999998866666655666665  44555543   46888999877776654

Present in FAF1 and Shp1p.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=81.12  E-value=1.2  Score=39.50  Aligned_cols=75  Identities=20%  Similarity=0.329  Sum_probs=48.9

Q ss_pred             CCCcEEEEE--EeCCc-e---E-EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC------cccCCCCCccccCCCCC
Q 027888          141 ERAKIVVSI--QDKGG-L---K-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDG------DKIGPEATPASLEMEDN  207 (217)
Q Consensus       141 ~~~kItIkV--~~qdg-~---v-~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG------~rI~~~~TP~sLgMEDG  207 (217)
                      ....|.|-+  -+... .   + ++-|.++.+++.|....+++.|++.++=-.+|.-      +.|..+.|-...++.||
T Consensus        65 ~~~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~G  144 (249)
T PF12436_consen   65 PSDDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDG  144 (249)
T ss_dssp             TTTEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TT
T ss_pred             CCCcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCC
Confidence            344555544  45443 2   3 7999999999999999999999988654444432      45778999999999999


Q ss_pred             cEEEEEec
Q 027888          208 DIIEVHTK  215 (217)
Q Consensus       208 DiIDV~~k  215 (217)
                      |||-+...
T Consensus       145 dIi~fQ~~  152 (249)
T PF12436_consen  145 DIICFQRA  152 (249)
T ss_dssp             EEEEEEE-
T ss_pred             CEEEEEec
Confidence            99977653

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1u4a_A	87	Solution Structure Of Human Sumo-3 C47s Length = 87		2e-06
2k1f_A	88	Sumo-3 From Drosophila Melanogaster (Dsmt3) Length		3e-06
1wz0_A	104	Solution Structure Of Human Sumo-2 (Smt3b), A Ubiqu		3e-06
2awt_A	95	Solution Structure Of Human Small Ubiquitin-Like Mo		3e-06
2d07_B	93	Crystal Structure Of Sumo-3-Modified Thymine-Dna Gl		3e-06
2io3_B	81	Crystal Structure Of Human Senp2 In Complex With Ra		4e-06
2io0_B	91	Crystal Structure Of Human Senp2 In Complex With Pr		4e-06
2ckh_B	79	Senp1-sumo2 Complex Length = 79		4e-06
2io1_B	94	Crystal Structure Of Human Senp2 In Complex With Pr		4e-06
2iyd_B	81	Senp1 Covalent Complex With Sumo-2 Length = 81		5e-06
3uin_B	80	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		5e-06
3tix_A	207	Crystal Structure Of The Chp1-Tas3 Complex Core Len		9e-06
2eke_C	106	Structure Of A Sumo-Binding-Motif Mimic Bound To Sm		9e-06
3qht_A	98	Crystal Structure Of The Monobody Ysmb-1 Bound To Y		1e-05
1l2n_A	101	Smt3 Solution Structure Length = 101		1e-05
1wm3_A	72	Crystal Structure Of Human Sumo-2 Protein Length =		1e-05
1euv_B	86	X-Ray Structure Of The C-Terminal Ulp1 Protease Dom		1e-05
1wm2_A	78	Crystal Structure Of Human Sumo-2 Protein Length =		1e-05
3v7o_A	227	Crystal Structure Of The C-Terminal Domain Of Ebola		1e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-05
3v62_A	84	Structure Of The S. Cerevisiae Srs2 C-Terminal Doma		1e-05
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-05
3v60_A	84	Structure Of S. Cerevisiae Pcna Conjugated To Sumo		2e-05
3pge_A	200	Structure Of Sumoylated Pcna Length = 200		2e-05
3ix6_A	360	Crystal Structure Of Thymidylate Synthase Thya From		3e-05
4da1_A	389	Crystal Structure Of Branched-Chain Alpha-Ketoacid		9e-05
3rzw_C	99	Crystal Structure Of The Monobody Ysmb-9 Bound To H		2e-04
2uyz_B	79	Non-Covalent Complex Between Ubc9 And Sumo1 Length		5e-04
1a5r_A	103	Structure Determination Of The Small Ubiquitin-Rela		6e-04
2kqs_A	99	Phosphorylation Of Sumo-Interacting Motif By Ck2 En		6e-04
2iy0_B	82	Senp1 (Mutant) Sumo1 Rangap Length = 82		6e-04
1y8r_C	97	Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Co		6e-04
2bf8_B	77	Crystal Structure Of Sumo Modified Ubiquitin Conjug		7e-04
1tgz_B	80	Structure Of Human Senp2 In Complex With Sumo-1 Len		7e-04
2iy1_B	83	Senp1 (Mutant) Full Length Sumo1 Length = 83		7e-04
1z5s_B	82	Crystal Structure Of A Complex Between Ubc9, Sumo-1		7e-04
2g4d_B	78	Crystal Structure Of Human Senp1 Mutant (C603s) In		7e-04
2jxx_A	97	Nmr Solution Structure Of Ubiquitin-Like Domain Of		8e-04

>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s Length = 87

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y+++  L    + F FDG  I    TPA LEMED
Sbjct: 8   VAGQD-GSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 67  EDTIDVFQQQT 77

>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3) Length = 88

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           QF++       +L   Y D+  L  + + F FDG  I    TP SLEME+ D IEV+ ++
Sbjct: 26  QFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQQ 85
Query: 217 T 217
           T
Sbjct: 86  T 86

>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin- Like Protein Length = 104

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 122 SSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ 181
            S   A E   E V     +   + V+ QD G + QF++       +L K Y ++  L  
Sbjct: 4   GSSGMADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSM 62
Query: 182 ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
             + F FDG  I    TPA LEMED D I+V  ++T
Sbjct: 63  RQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98

>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like Modifier Protein Isoform 2 (Sumo-2) Length = 95

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 127 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 186
           A E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F
Sbjct: 2   ADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 187 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            FDG  I    TPA LEMED D I+V  ++T
Sbjct: 61  RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91

>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna Glycosylase Length = 93

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 127 ALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVF 186
           A E   E V     +   + V+ QD G + QF++       +L K Y ++  L    + F
Sbjct: 2   ADEKPKEGVKTENNDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF 60
Query: 187 CFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            FDG  I    TPA LEMED D I+V  ++T
Sbjct: 61  RFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91

>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With Rangap1- Sumo-2 Length = 81

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 139 AIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT 198
           A +   + V+ QD G + QF++       +L K Y ++  L    + F FDG  I    T
Sbjct: 2   ANDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDT 60
Query: 199 PASLEMEDNDIIEVHTKKT 217
           PA LEMED D I+V  ++T
Sbjct: 61  PAQLEMEDEDTIDVFQQQT 79

>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 91

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 139 AIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT 198
           A +   + V+ QD G + QF++       +L K Y ++  L    + F FDG  I    T
Sbjct: 2   ANDHINLKVAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDT 60
Query: 199 PASLEMEDNDIIEVHTKKT 217
           PA LEMED D I+V  ++T
Sbjct: 61  PAQLEMEDEDTIDVFQQQT 79

>pdb|2CKH|B Chain B, Senp1-sumo2 Complex Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 8   VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 67  EDTIDVFQQQT 77

>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With Presumo-3 Length = 94

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 12  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 70
Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 71  EDTIDVFQQQT 81

>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2 Length = 81

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 8   VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 66
Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 67  EDTIDVFQQQT 77

>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 9   VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 67
Query: 207 NDIIEVHTKKT 217
            D I+V  ++T
Sbjct: 68  EDTIDVFQQQT 78

>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core Length = 207

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 71  FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQ 129

>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p- Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like Protein-E2 Complex As A Platform For Selective Interactions Within A Sumo Pathway Length = 106

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 45  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103

>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast Sumo Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 37  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 92

>pdb|1L2N|A Chain A, Smt3 Solution Structure Length = 101

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 37  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 92

>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein Length = 72

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 6   VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 64
Query: 207 NDIIEV 212
            D I+V
Sbjct: 65  EDTIDV 70

>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 86

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 25  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 80

>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 147 VSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED 206
           V+ QD G + QF++       +L K Y ++  L    + F FDG  I    TPA LEMED
Sbjct: 11  VAGQD-GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMED 69
Query: 207 NDIIEV 212
            D I+V
Sbjct: 70  EDTIDV 75

>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola Virus Vp30 (Strain Reston-89) Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In Complex With Pcna Conjugated To Sumo On Lysine 164 Length = 84

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F +       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 23  FXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 81

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH 90

>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On Lysine 164 Length = 84

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 23  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 81

>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna Length = 200

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 43  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101

>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From Brucella Melitensis Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           F++       RL + +A +   + ++L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 35  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93

>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid Dehydrogenase Phosphatase With Mg (Ii) Ions At The Active Site Length = 389

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 158 FRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           F++       RL + +A +   + ++L F +DG +I  +  P  L+MEDNDIIE H
Sbjct: 44  FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAH 99

>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human Sumo1 Length = 99

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + YA +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 37  HFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 217 T 217
           T
Sbjct: 97  T 97

>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 79

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 140 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP 199
           +E  K+ V  QD   +  F+V      ++L + Y  +  +   +L F F+G +I    TP
Sbjct: 1   MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP 59
Query: 200 ASLEMEDNDIIEVHTKKT 217
             L ME+ D+IEV+ ++T
Sbjct: 60  KELGMEEEDVIEVYQEQT 77

>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related Modifier Sumo-1, Nmr, 10 Structures Length = 103

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 37  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 217 T 217
           T
Sbjct: 97  T 97

>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2 Enhances Daxx Sumo Binding Activity Length = 99

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 37  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 96
Query: 217 T 217
           T
Sbjct: 97  T 97

>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap Length = 82

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 16  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 217 T 217
           T
Sbjct: 76  T 76

>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex Length = 97

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 35  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 94
Query: 217 T 217
           T
Sbjct: 95  T 95

>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating Enzyme E2-25k Length = 77

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 15  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 74
Query: 217 T 217
           T
Sbjct: 75  T 75

>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1 Length = 80

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 18  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 77
Query: 217 T 217
           T
Sbjct: 78  T 78

>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1 Length = 83

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 16  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 217 T 217
           T
Sbjct: 76  T 76

>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 82

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 20  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 79
Query: 217 T 217
           T
Sbjct: 80  T 80

>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 78

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
            F+V      ++L + Y  +  +   +L F F+G +I    TP  L ME+ D+IEV+ ++
Sbjct: 16  HFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75
Query: 217 T 217
           T
Sbjct: 76  T 76

>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of Nfatc2ip. Northeast Structural Genomics Consortium Target Hr5627 Length = 97

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 163 DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEV 212
           D   + L   Y + + L    L F FDG K+     PA L ME  D+IEV
Sbjct: 46  DSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEV 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	1e-19
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	3e-19
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	5e-19
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	5e-19
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	6e-19
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	2e-18
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	3e-18
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	4e-18
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	4e-18
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	5e-18
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	7e-18
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	8e-18
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	3e-17
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	4e-17
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	1e-10
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	7e-09
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 Length = 106

 Score = 79.2 bits (195), Expect = 1e-19
 Identities = 25/97 (25%), Positives = 42/97 (43%)

Query: 121 DSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLD 180
                  L     +V         I + + D      F++       RL + +A +   +
Sbjct: 8   HHHSQDPLVPRGSEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67

Query: 181 QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            ++L F +DG +I  + TP  L+MEDNDIIE H ++ 
Sbjct: 68  MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 Length = 91

 Score = 77.9 bits (192), Expect = 3e-19
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 140 IERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEAT 198
           +    I + +  + G   QF++       +L K Y ++  L    + F FDG  I    T
Sbjct: 1   MANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDT 60

Query: 199 PASLEMEDNDIIEVHTKKT 217
           PA LEMED D I+V  ++T
Sbjct: 61  PAQLEMEDEDTIDVFQQQT 79

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus} Length = 227

 Score = 81.0 bits (199), Expect = 5e-19
 Identities = 26/94 (27%), Positives = 43/94 (45%)

Query: 124 MPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQEN 183
           M       S +V         I + + D      F++       RL + +A +   + ++
Sbjct: 1   MGHHHHHHSGEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS 60

Query: 184 LVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           L F +DG +I  + TP  L+MEDNDIIE H ++ 
Sbjct: 61  LRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} Length = 207

 Score = 80.6 bits (198), Expect = 5e-19
 Identities = 24/89 (26%), Positives = 42/89 (47%)

Query: 129 EAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188
           +    +V         I + + D      F++       RL + +A +   + ++L F +
Sbjct: 42  QEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY 101

Query: 189 DGDKIGPEATPASLEMEDNDIIEVHTKKT 217
           DG +I  + TP  L+MEDNDIIE H ++ 
Sbjct: 102 DGIEIQADQTPEDLDMEDNDIIEAHREQI 130

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 Length = 94

 Score = 77.2 bits (190), Expect = 6e-19
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 141 ERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP 199
               I + +  + G   QF++       +L K Y ++  L    + F FDG  I    TP
Sbjct: 4   MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP 63

Query: 200 ASLEMEDNDIIEVHTKKT 217
           A LEMED D I+V  ++T
Sbjct: 64  AQLEMEDEDTIDVFQQQT 81

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 76.4 bits (188), Expect = 2e-18
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 122 SSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLD 180
           SS  + +  E  K          I + +  + G   QF++       +L K Y ++  L 
Sbjct: 2   SSGSSGMADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS 61

Query: 181 QENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
              + F FDG  I    TPA LEMED D I+V  ++T
Sbjct: 62  MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} Length = 115

 Score = 76.2 bits (187), Expect = 3e-18
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 1/98 (1%)

Query: 121 DSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNL 179
            S M       S +      E   I + +  +   +  F+V      ++L + Y  +  +
Sbjct: 17  RSHMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 76

Query: 180 DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
              +L F F+G +I    TP  L ME+ D+IEV+ ++ 
Sbjct: 77  PMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} Length = 97

 Score = 75.4 bits (185), Expect = 4e-18
 Identities = 22/84 (26%), Positives = 36/84 (42%)

Query: 129 EAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF 188
                + S    ++ ++ V  ++K    +  +  D   + L   Y + + L    L F F
Sbjct: 12  SGLVPRGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF 71

Query: 189 DGDKIGPEATPASLEMEDNDIIEV 212
           DG K+     PA L ME  D+IEV
Sbjct: 72  DGTKLSGRELPADLGMESGDLIEV 95

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Length = 79

 Score = 74.5 bits (183), Expect = 4e-18
 Identities = 20/72 (27%), Positives = 35/72 (48%)

Query: 141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPA 200
           +  ++ V  ++K  + +  +  D   + L   Y + + L    L F FDG K+  +  PA
Sbjct: 6   QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPA 65

Query: 201 SLEMEDNDIIEV 212
            L +E  D+IEV
Sbjct: 66  DLGLESGDLIEV 77

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Length = 79

 Score = 74.4 bits (183), Expect = 5e-18
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 144 KIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASL 202
            I + +  +   +  F+V      ++L + Y  +  +   +L F F+G +I    TP  L
Sbjct: 3   YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 62

Query: 203 EMEDNDIIEVHTKKT 217
            ME+ D+IEV+ ++T
Sbjct: 63  GMEEEDVIEVYQEQT 77

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C Length = 97

 Score = 74.6 bits (183), Expect = 7e-18
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 124 MPAALEAESEKVSKPAIERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQE 182
           M       S +      E   I + +  +   +  F+V      ++L + Y  +  +   
Sbjct: 1   MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMN 60

Query: 183 NLVFCFDGDKIGPEATPASLEMEDNDIIEVH 213
           +L F F+G +I    TP  L ME+ D+IEV+
Sbjct: 61  SLRFLFEGQRIADNHTPKELGMEEEDVIEVY 91

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} Length = 110

 Score = 75.0 bits (184), Expect = 8e-18
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 121 DSSMPAALEAESEKVSKPAIERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNL 179
           ++    +             E A + V + +  G +  FR+ +    ++L   Y  K  +
Sbjct: 3   NNGGEPSNNGGEGAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGI 62

Query: 180 DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT 217
            + ++ F FDG  I    TP  L MED+D+I+   ++T
Sbjct: 63  SRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT 100

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A Length = 93

 Score = 72.9 bits (179), Expect = 3e-17
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 131 ESEKVSKPAIERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFD 189
           E  K          I + +  + G   QF++       +L K Y ++  L    + F FD
Sbjct: 4   EKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD 63

Query: 190 GDKIGPEATPASLEMEDNDIIEVHTKKT 217
           G  I    TPA LEMED D I+V  ++T
Sbjct: 64  GQPINETDTPAQLEMEDEDTIDVFQQQT 91

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B Length = 72

 Score = 72.1 bits (177), Expect = 4e-17
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 145 IVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLE 203
           I + +  + G   QF++       +L K Y ++  L    + F FDG  I    TPA LE
Sbjct: 2   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61

Query: 204 MEDNDIIEVH 213
           MED D I+V 
Sbjct: 62  MEDEDTIDVF 71

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens} Length = 95

 Score = 55.0 bits (132), Expect = 1e-10
 Identities = 12/67 (17%), Positives = 30/67 (44%)

Query: 145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM 204
             + I+ +  L +  +   +  + +    A  + +    ++  F   ++ P ATP +L++
Sbjct: 22  FPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKL 81

Query: 205 EDNDIIE 211
              DII+
Sbjct: 82  GVADIID 88

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} Length = 200

 Score = 53.0 bits (126), Expect = 7e-09
 Identities = 25/94 (26%), Positives = 43/94 (45%)

Query: 123 SMPAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQE 182
           S     +    +V         I + + D      F++       RL + +A +   + +
Sbjct: 8   SDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD 67

Query: 183 NLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK 216
           +L F +DG +I  + TP  L+MEDNDIIE H ++
Sbjct: 68  SLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Length = 82

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 157 QFRVYADDKFERLFKMYADKVNLDQENLV-FCFDGDKIGPEATPASLEMEDNDIIEVH 213
           +  +  D   + L K Y  +V +     +   F+G+ + P     S E+ED D + V 
Sbjct: 23  RLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 42/249 (16%), Positives = 78/249 (31%), Gaps = 74/249 (29%)

Query: 7   VDDLEPLFDYRRVQPHNLVFFDDDDTPPIPCPKRTKVGKNVGVDIRELEVVDCEEEEEEE 66
           ++ LEP  +YR++    L  F       IP    T +          L ++  +  + + 
Sbjct: 363 LNVLEPA-EYRKMF-DRLSVFPPS--AHIP----TIL----------LSLIWFDVIKSDV 404

Query: 67  EDWLPPPPKVMVQKQLVE-DSAIKELRLKKQELVSFAKSADDV---IRAVEE-SVKRKLD 121
              +      + +  LVE       + +    L    K  ++       V+  ++ +  D
Sbjct: 405 MVVV----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 122 SS------------------MPAALEAE---------------SEKV---SKPAIERAKI 145
           S                   +      E                +K+   S        I
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 146 VVSIQDKGGLKQFRVY---ADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASL 202
           + ++Q    LK ++ Y    D K+ERL     D +   +ENL+     D +       +L
Sbjct: 521 LNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL-----RIAL 572

Query: 203 EMEDNDIIE 211
             ED  I E
Sbjct: 573 MAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	99.94
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	99.92
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	99.91
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.89
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.89
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.89
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.89
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.89
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	99.88
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.88
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.88
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.87
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	99.87
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	99.83
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.82
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	99.8
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	99.77
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	99.76
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.47
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.42
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	98.87
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	98.85
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	98.83
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	98.79
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	98.77
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	98.77
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	98.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	98.76
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	98.75
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	98.75
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	98.74
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	98.73
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	98.7
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	98.68
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	98.65
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	98.61
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	98.6
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	98.59
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	98.58
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	98.57
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	98.57
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	98.54
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	98.52
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	98.51
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	98.51
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	98.51
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	98.5
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	98.48
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	98.44
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.44
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	98.42
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	98.4
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	98.38
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	98.37
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	98.34
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	98.33
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	98.28
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	98.25
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	97.55
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	98.22
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	98.21
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	98.21
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	98.2
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	98.2
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	98.19
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	98.18
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	98.13
1we6_A	111	Splicing factor, putative; structural genomics, ub	98.13
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	98.12
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	98.1
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	98.09
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	98.05
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	98.03
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	98.01
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	97.98
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	97.98
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	97.97
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	97.95
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	97.9
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	97.83
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	97.8
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	97.79
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	97.77
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	97.71
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	97.71
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	97.69
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	97.68
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	97.67
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	97.67
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	97.63
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	97.56
2kj6_A	97	Tubulin folding cofactor B; methods development, N	97.45
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	97.44
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	97.42
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	97.42
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	97.37
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	97.37
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	97.33
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	97.3
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	97.24
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.2
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	96.98
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	96.87
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	96.81
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	96.73
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.08
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	95.81
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.78
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	94.77
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	94.46
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	91.87
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	91.47
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	91.39
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	90.27
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	89.61
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	88.55
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	87.6
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	87.4
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	86.11
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	86.1
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	85.06
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	84.84
1j0g_A	92	Hypothetical protein 1810045K17; ubiquitin-like fo	83.7
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	80.46

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=99.94  E-value=2.4e-27  Score=182.52  Aligned_cols=91  Identities=14%  Similarity=0.280  Sum_probs=80.8

Q ss_pred             chhhhhhhccCCCCcCCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCC
Q 027888          125 PAALEAESEKVSKPAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM  204 (217)
Q Consensus       125 ~~e~~~~~~~~~~p~~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgM  204 (217)
                      .++++++++++. |. .+.+|+|+|++.+++++|+||++|+|+|||++||++.|++++++||+|||.||++++||++|||
T Consensus         4 ~~~~~~~~~~~~-~~-~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~m   81 (95)
T 2l76_A            4 EDEVVLVEGPTL-PE-TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKL   81 (95)
T ss_dssp             CCCCCSSSCCCC-CS-CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTC
T ss_pred             cccEEEecCCCC-CC-CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCC
Confidence            456666666654 43 5788999999766679999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeccC
Q 027888          205 EDNDIIEVHTKKT  217 (217)
Q Consensus       205 EDGDiIDV~~kQ~  217 (217)
                      ||||+|||++-.|
T Consensus        82 eD~DiID~~~~~~   94 (95)
T 2l76_A           82 GVADIIDCVVLTS   94 (95)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCCCEEEEEEecC
Confidence            9999999998654

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=99.92  E-value=5.4e-25  Score=174.27  Aligned_cols=77  Identities=26%  Similarity=0.476  Sum_probs=73.1

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++.+|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|.
T Consensus        37 ~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~  114 (115)
T 3kyd_D           37 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC  114 (115)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence            578999999999885 89999999999999999999999999999999999999999999999999999999999985

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=166.05  Aligned_cols=73  Identities=29%  Similarity=0.497  Sum_probs=70.6

Q ss_pred             CCCcEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          141 ERAKIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       141 ~~~kItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ++.+|+|+|+++++ + ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+
T Consensus        22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            68999999999998 3 7999999999999999999999999999999999999999999999999999999997

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.89  E-value=1.7e-23  Score=158.33  Aligned_cols=77  Identities=32%  Similarity=0.588  Sum_probs=72.7

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++++|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus         2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   79 (91)
T 2io0_B            2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   79 (91)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCC
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            367899999999886 89999999999999999999999999999999999999999999999999999999999985

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.89  E-value=2.9e-23  Score=152.47  Aligned_cols=75  Identities=28%  Similarity=0.522  Sum_probs=71.7

Q ss_pred             CcCCCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          138 PAIERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       138 p~~~~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      |. ++.+|+|+|++++|  .++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+
T Consensus         2 p~-~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            2 PL-GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             TT-CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CC-CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            55 78999999999888  38999999999999999999999999999999999999999999999999999999997

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.89  E-value=2.8e-23  Score=149.52  Aligned_cols=71  Identities=34%  Similarity=0.611  Sum_probs=68.6

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|++
T Consensus         1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~   72 (72)
T 1wm3_A            1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   72 (72)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence            599999999886 89999999999999999999999999999999999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.89  E-value=4.5e-23  Score=155.96  Aligned_cols=77  Identities=32%  Similarity=0.591  Sum_probs=73.0

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .+.+|+|+|++++|. ++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||.+|+|+|||+|+|+++|+
T Consensus        14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~   91 (93)
T 2d07_B           14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   91 (93)
T ss_dssp             -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred             CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence            578999999998886 89999999999999999999999999999999999999999999999999999999999985

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.89  E-value=4.4e-23  Score=160.78  Aligned_cols=78  Identities=31%  Similarity=0.570  Sum_probs=73.5

Q ss_pred             cCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          139 AIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       139 ~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ..++.+|+|+|++ +|. ++|+|+++|+|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+++|+
T Consensus        26 ~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~  104 (106)
T 2eke_C           26 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI  104 (106)
T ss_dssp             CCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred             CCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence            4478899999999 775 89999999999999999999999999999999999999999999999999999999999985

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.9e-23  Score=177.15  Aligned_cols=83  Identities=30%  Similarity=0.537  Sum_probs=72.0

Q ss_pred             CCCCc-CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          135 VSKPA-IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       135 ~~~p~-~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ..+|. .++.+|+|+|+..+..++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|+|||+|+|+
T Consensus        47 d~KP~~dp~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~  126 (207)
T 3tix_A           47 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAH  126 (207)
T ss_dssp             --------CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEEC
T ss_pred             CCCCCCCCCCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence            44443 36899999998544458999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccC
Q 027888          214 TKKT  217 (217)
Q Consensus       214 ~kQ~  217 (217)
                      ++|+
T Consensus       127 leQ~  130 (207)
T 3tix_A          127 REQI  130 (207)
T ss_dssp             CCCC
T ss_pred             Eecc
Confidence            9985

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.88  E-value=9e-23  Score=158.05  Aligned_cols=77  Identities=32%  Similarity=0.591  Sum_probs=74.1

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .+.+|+|+|++++|. ++|+|+++|+|.+||++||++.|++++++||+|+|++|.+++||.+|+|+|||+|+|+++|+
T Consensus        21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   98 (104)
T 1wz0_A           21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   98 (104)
T ss_dssp             CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            578999999998886 89999999999999999999999999999999999999999999999999999999999885

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.88  E-value=1.3e-22  Score=154.12  Aligned_cols=78  Identities=32%  Similarity=0.562  Sum_probs=72.6

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      +++++|+|+|++++|. ++|+|+++++|++||++||++.|++++++||+|+|++|.+++||++|+|+|||+|+|+++|+
T Consensus         3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~   81 (94)
T 2io1_B            3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   81 (94)
T ss_dssp             ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            3578999999998886 89999999999999999999999999999999999999999999999999999999999884

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.87  E-value=9.7e-23  Score=159.64  Aligned_cols=78  Identities=29%  Similarity=0.543  Sum_probs=74.8

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .++.+|+|+|++++|. ++|+|+++|+|++||++||++.|+++.++||+|||++|.+++||++|+|+|||+|+|++.|+
T Consensus        22 ~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~  100 (110)
T 2k8h_A           22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQT  100 (110)
T ss_dssp             CCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCC
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEccc
Confidence            3678999999999886 89999999999999999999999999999999999999999999999999999999999885

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.6e-22  Score=171.82  Aligned_cols=83  Identities=30%  Similarity=0.535  Sum_probs=72.9

Q ss_pred             CCCCc-CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          135 VSKPA-IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       135 ~~~p~-~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ..+|. .++.+|+|+|+..++.++|+|+++|+|++||++||++.|++++++||+|||++|++++||++|+|+|||+|+|+
T Consensus        19 ~~kp~~~~~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~   98 (200)
T 3pge_A           19 EVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAH   98 (200)
T ss_dssp             ------CCCCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             ccCCCCCCCCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            34442 46899999998533458999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccC
Q 027888          214 TKKT  217 (217)
Q Consensus       214 ~kQ~  217 (217)
                      ++|.
T Consensus        99 ~~q~  102 (200)
T 3pge_A           99 REQI  102 (200)
T ss_dssp             ECCS
T ss_pred             eccC
Confidence            9984

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=99.83  E-value=2.2e-22  Score=174.50  Aligned_cols=76  Identities=30%  Similarity=0.577  Sum_probs=0.0

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++++|+|+| +++|. ++|+|+++|||+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+++|+
T Consensus        18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~   94 (227)
T 3v7o_A           18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (227)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence            578999999 77765 89999999999999999999999999999999999999999999999999999999999984

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.82  E-value=2.6e-20  Score=158.54  Aligned_cols=77  Identities=30%  Similarity=0.552  Sum_probs=73.5

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .+++|+|+|++.++.++|+|+++|+|+|||++||++.|++++++||+|||++|++++||++|+|+|||+|+|+.+|.
T Consensus        18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~   94 (209)
T 3uf8_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (209)
T ss_dssp             CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCT
T ss_pred             CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccc
Confidence            68999999998555689999999999999999999999999999999999999999999999999999999999984

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=99.80  E-value=3.3e-21  Score=175.27  Aligned_cols=78  Identities=28%  Similarity=0.528  Sum_probs=0.0

Q ss_pred             CCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          140 IERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ..+.+|+|+|++.+.+++|+|+++|+|+|||++||+++|++++++||+|+|++|++++||++|+|||||+|+|+++|+
T Consensus        26 ~~~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~  103 (389)
T 4da1_A           26 KPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQI  103 (389)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CCCCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccc
Confidence            367899999998555689999999999999999999999999999999999999999999999999999999999985

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=99.77  E-value=1.7e-20  Score=172.63  Aligned_cols=77  Identities=30%  Similarity=0.552  Sum_probs=0.0

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++++|+|+|++++++++|+|+++|+|+|||++||++.|++++++||+|||++|.+++||++|+|||||+|+|+.+|+
T Consensus        18 ~~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~   94 (360)
T 3ix6_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   94 (360)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CCCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence            57899999998655689999999999999999999999999999999999999999999999999999999999984

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=99.76  E-value=1.7e-18  Score=129.53  Aligned_cols=73  Identities=21%  Similarity=0.336  Sum_probs=67.8

Q ss_pred             CCcEEEEEEeCCc-eEEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          142 RAKIVVSIQDKGG-LKQFRVYADDKFERLFKMYADKVNLDQE-NLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       142 ~~kItIkV~~qdg-~v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ...|++-+++... .+.|+|++++++.+||++||.+.|++++ ++||.|||.||.+++||.+++|+|||.|+|++
T Consensus         7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A            7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            3568888887665 4999999999999999999999999998 99999999999999999999999999999986

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.47  E-value=1.4e-13  Score=98.20  Aligned_cols=75  Identities=27%  Similarity=0.490  Sum_probs=70.6

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++|+|.|.+.+|. +.|.|.+++++..|++.|+++.|++++..||+|+|+.|.++.|+.+++|++||+|++++++.
T Consensus         2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~   77 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   77 (79)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence            4689999998875 78999999999999999999999999999999999999999999999999999999998763

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.42  E-value=5.1e-13  Score=100.24  Aligned_cols=78  Identities=27%  Similarity=0.474  Sum_probs=72.1

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .++..|.|.|...+|. +.|.|.+++++..|+..|+++.|++++..||+|+|++|..+.|+.+++|++|++|++++++.
T Consensus        17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~   95 (97)
T 1wyw_B           17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   95 (97)
T ss_dssp             --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence            3567899999998876 78999999999999999999999999999999999999999999999999999999998763

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=98.87  E-value=1.3e-08  Score=73.06  Aligned_cols=76  Identities=13%  Similarity=0.295  Sum_probs=70.6

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....+.|.|...+|. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus         9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl   85 (88)
T 3dbh_I            9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL   85 (88)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred             CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            567799999987775 7899999999999999999999999999999999999999999999999999999998765

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.85  E-value=1.2e-08  Score=72.68  Aligned_cols=74  Identities=14%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl   76 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL   76 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence            3577888877765 7899999999999999999999999999999999999999999999999999999999875

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=98.83  E-value=2.9e-08  Score=72.68  Aligned_cols=76  Identities=13%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....+.|.|...+|. +.+.|..+++...|....+++.|++++..|++|+|..+..+.|..++|+.+|++|.+.++-
T Consensus        14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl   90 (91)
T 3v6c_B           14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   90 (91)
T ss_dssp             CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence            467889999987775 7899999999999999999999999999999999999999999999999999999998764

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=98.79  E-value=3.4e-08  Score=70.13  Aligned_cols=74  Identities=12%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~   76 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL   76 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence            4578888887775 6899999999999999999999999999999999999999999999999999999998865

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.77  E-value=3.1e-08  Score=75.07  Aligned_cols=82  Identities=10%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             CCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          135 VSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       135 ~~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ++++......+.|.|...+|. +.+.|..+++...|....+.+.|++++..||+|.|+.|..+.|-.++|+.+|++|.++
T Consensus        14 ~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv   93 (106)
T 1ttn_A           14 PEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI   93 (106)
T ss_dssp             -------CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred             CCCCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence            343333677899999987775 6899999999999999999999999999999999999999999999999999999998


Q ss_pred             ecc
Q 027888          214 TKK  216 (217)
Q Consensus       214 ~kQ  216 (217)
                      ..+
T Consensus        94 ~~~   96 (106)
T 1ttn_A           94 VSQ   96 (106)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            765

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=98.77  E-value=5.2e-08  Score=69.03  Aligned_cols=74  Identities=7%  Similarity=0.182  Sum_probs=68.5

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..+..+.|..++++++|++|.+.++.
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl   77 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   77 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            4688888887775 6899999999999999999999999999999999999999999999999999999998764

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=98.77  E-value=4.7e-08  Score=67.69  Aligned_cols=71  Identities=13%  Similarity=0.217  Sum_probs=65.2

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....++..|++++..+++|+|+.+..+.|-.++++.+|++|.+.++.
T Consensus         2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~   73 (76)
T 3a9j_A            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL   73 (76)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            5677776665 7899999999999999999999999999999999999999999999999999999998865

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=98.76  E-value=4.7e-08  Score=67.68  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.+.++++...|...++++.|++++..+++|+|+.+..+.|-.++++.+|++|.+..+.
T Consensus         2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~   73 (76)
T 1ndd_A            2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL   73 (76)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            5677776665 7899999999999999999999999999999999999999999999999999999998764

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.75  E-value=6.1e-08  Score=69.71  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +...+.|.|...++. +.+.|.++++...|...++++.|++++..||+|+|+.|..+.|..++++.+|++|.++.+.
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (87)
T 1wh3_A            4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK   80 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence            345688899887765 6899999999999999999999999999999999999999999999999999999998764

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=98.75  E-value=3.7e-08  Score=73.47  Aligned_cols=76  Identities=11%  Similarity=0.217  Sum_probs=68.5

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .+..+.|.|...+|. +.+.|.++++...|....+++.|++++..||+|+|+.|..+.|..++++++|++|.+.++.
T Consensus        19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl   95 (98)
T 4hcn_B           19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   95 (98)
T ss_dssp             ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            566788888887775 7899999999999999999999999999999999999999999999999999999998875

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=98.74  E-value=9e-08  Score=66.87  Aligned_cols=71  Identities=11%  Similarity=0.198  Sum_probs=65.6

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|.. +|. +.+.|..+++...|....++..|++++..|++|+|+.+..+.|-.++|+.+|++|.+..++
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            6778877 554 6899999999999999999999999999999999999999999999999999999998765

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=6.7e-08  Score=68.16  Aligned_cols=75  Identities=13%  Similarity=0.243  Sum_probs=68.5

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +...+.|.|...+|. +.+.|..+++...|....+++.|++++..+++|+|+.+..+.|-.++|+.+|++|.++++
T Consensus         4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A            4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            456788888877765 689999999999999999999999999999999999999999999999999999999875

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=98.70  E-value=7.8e-08  Score=70.47  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=65.7

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|...+|. +.+.|..+++...|....+++.|++++..||+|+|..|..+.|..++++.+|++|.++++.
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~   74 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   74 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence            45667776665 6899999999999999999999999999999999999999999999999999999998764

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=98.68  E-value=1.3e-07  Score=72.45  Aligned_cols=76  Identities=13%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....+.|.|...+|. +.|.|.++++...|...++++.|+++...||+|+|+.|..+.|..++++.+|++|.++++.
T Consensus        32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl  108 (111)
T 3vdz_A           32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  108 (111)
T ss_dssp             GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred             CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            345789999887775 7899999999999999999999999999999999999999999999999999999999875

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.65  E-value=2.5e-07  Score=65.19  Aligned_cols=74  Identities=14%  Similarity=0.212  Sum_probs=66.9

Q ss_pred             cEEEEEEeCCce-E-EEE-EcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          144 KIVVSIQDKGGL-K-QFR-VYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       144 kItIkV~~qdg~-v-~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .+.|.|...+|. + .+. |.++++...|....+++.|++++..|++|+|..+..+.|-.++|+.+|++|.+..+++
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            367778777664 4 788 9999999999999999999999999999999999999999999999999999998764

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=98.61  E-value=2.9e-07  Score=70.24  Aligned_cols=75  Identities=12%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...+.|.|...+|. +.+.|..+++...|....+++.|++++..||+|+|+.|..+.|..++++.+|++|.+++++
T Consensus        33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl  108 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  108 (111)
T ss_dssp             SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECC
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            35789999887765 6899999999999999999999999999999999999999999999999999999998875

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.60  E-value=3.3e-07  Score=69.13  Aligned_cols=76  Identities=16%  Similarity=0.248  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....|.|.|...++.+.+.|..+++...|....+++.|++++..||+|+|+.|..+.|-.++++.+|++|.++.+.
T Consensus        14 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   89 (106)
T 1wx7_A           14 DPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   89 (106)
T ss_dssp             CSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred             CCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence            4567899998877777899999999999999999999999999999999999999999999999999999998764

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=98.59  E-value=2.6e-07  Score=68.43  Aligned_cols=71  Identities=13%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|...++++.|++++..+|+|+|+.|..+.|..++|+.+|++|.+..+.
T Consensus         2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   73 (98)
T 1yx5_B            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (98)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            5677776665 6899999999999999999999999999999999999999999999999999999988754

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=98.58  E-value=4e-07  Score=66.03  Aligned_cols=74  Identities=12%  Similarity=0.205  Sum_probs=67.7

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...+.|.|...+|. +.|.|..+++...|....+++.|++++..||+|.|+.|..+.|-.++++ +|++|.++.+.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~   77 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   77 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECC
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecC
Confidence            45688899887775 6899999999999999999999999999999999999999999999999 89999988764

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.57  E-value=1.9e-07  Score=68.85  Aligned_cols=76  Identities=16%  Similarity=0.255  Sum_probs=68.6

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....|.|.|...+..+.+.|..+++...|...++++.|++++..||+|.|+.|..+.|..++++.+|++|.++.+.
T Consensus        14 ~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~   89 (96)
T 1wx8_A           14 SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   89 (96)
T ss_dssp             CSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            3467888888874457899999999999999999999999999999999999999999999999999999988764

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=98.57  E-value=1.9e-07  Score=68.15  Aligned_cols=74  Identities=7%  Similarity=0.182  Sum_probs=67.1

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|...+|. +.+.|.++++...|....+++.|++++..||+|+|..|..+.|..++++.+|++|.+....
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~   77 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   77 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence            3578888887665 6899999999999999999999999999999999999999999999999999999998764

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=98.54  E-value=3.4e-07  Score=66.94  Aligned_cols=72  Identities=14%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..|..+.|..++++.+|++|.+..+.
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~   82 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   82 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            45667676765 6899999999999999999999999999999999999999999999999999999998764

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.52  E-value=6.9e-07  Score=64.50  Aligned_cols=76  Identities=14%  Similarity=0.174  Sum_probs=68.7

Q ss_pred             CCCcEEEEEEeCCc-e-EEE-EEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGG-L-KQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg-~-v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +...+.|.|...+| . +.+ .|.++++...|....+++.|++++..||+|+|..|..+.|-.++++.+|++|.++++.
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   82 (89)
T 1wy8_A            4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   82 (89)
T ss_dssp             CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence            45678888888766 4 688 5999999999999999999999999999999999999999999999999999998764

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=98.51  E-value=8.9e-07  Score=66.68  Aligned_cols=75  Identities=13%  Similarity=0.236  Sum_probs=67.7

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...+.|.|...+..+.+.|.++++...|....++..|++++..||+|.|+.|..+.|-.++|+.+|++|.+..+.
T Consensus        23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~   97 (101)
T 2klc_A           23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKT   97 (101)
T ss_dssp             CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECC
T ss_pred             CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence            456888888774457899999999999999999999999999999999999999999999999999999998764

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.51  E-value=9.8e-07  Score=69.32  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=68.4

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +...|+|.|...+..+.+.|..+++...|...++++.|++++..||+|+|+.|..+.|-.++++.+|++|.++.+.
T Consensus        29 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~  104 (125)
T 1j8c_A           29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR  104 (125)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred             CCCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            3467888888874347899999999999999999999999999999999999999999999999999999998764

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=98.51  E-value=7.1e-07  Score=67.23  Aligned_cols=76  Identities=16%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....+.|.|...++...+.|.++++...|....+++.|++++..||+|.|+.|..+.|-.++++.+|++|.+..+.
T Consensus        19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~   94 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   94 (100)
T ss_dssp             CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcC
Confidence            4567899998888777899999999999999999999999999999999999999999999999999999998764

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=98.50  E-value=5.9e-07  Score=65.63  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=64.7

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....+++.|++++..|++|+|..|..+.|-.++++++|++|.+.++.
T Consensus         2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl   73 (88)
T 4fbj_B            2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL   73 (88)
T ss_dssp             EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBC
T ss_pred             EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence            4667766665 7899999999999999999999999999999999999999999999999999999998764

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=98.48  E-value=1.2e-06  Score=62.35  Aligned_cols=74  Identities=8%  Similarity=0.190  Sum_probs=66.2

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhh---cCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~---~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|...+|. +.+.|..+++...|....+++   .|++++..|++|.|+.|..+.|-.++++.+|++|.++.+.
T Consensus         4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            3577888887665 689999999999999999997   7899999999999999999999999999999999998764

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=98.44  E-value=5.1e-07  Score=66.85  Aligned_cols=74  Identities=19%  Similarity=0.251  Sum_probs=64.9

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...+.|.|.. +..+.+.|.++++...|....+++.|++++..||+|+|+.|..+.|..++++.+|++|.+.++.
T Consensus        17 ~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl   90 (93)
T 2l7r_A           17 RGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM   90 (93)
T ss_dssp             ---CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred             CCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            3456777776 4457899999999999999999999999999999999999999999999999999999998764

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.44  E-value=1.3e-06  Score=67.83  Aligned_cols=73  Identities=12%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .+.|.|...+|. +.+.+.++++...|...++++.|++++..+|+|+|+.+..+.|..++++.+|++|.+..++
T Consensus        76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~  149 (152)
T 3b08_A           76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  149 (152)
T ss_dssp             CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence            366777776664 7899999999999999999999999999999999999999999999999999999998875

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=98.42  E-value=1.5e-06  Score=62.67  Aligned_cols=72  Identities=13%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ...|.|.|...+|. +.+.|.++++...|....+++.|++++..|++|.|+.+..+.|-.++|+ +|++|.+..
T Consensus        15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~   87 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE   87 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence            45688889887765 6899999999999999999999999999999999999999999999999 899998875

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=7.1e-07  Score=67.78  Aligned_cols=72  Identities=7%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|...+|. +.+.|..+++...|....+++.|+++...||+|.|+.|..+.|-.++|+.+|++|.+++.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~   74 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ   74 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence            45677775665 6899999999999999999999999999999999999999999999999999999998764

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.38  E-value=2e-06  Score=63.60  Aligned_cols=71  Identities=7%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhh---cCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADK---VNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~---~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|..+++...|....++.   .|++++..|++|.|+.|..+.|-.++|+.+|++|.++..+
T Consensus         2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A            2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            5667776664 789999999999999999998   7899999999999999999999999999999999988754

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.37  E-value=2e-06  Score=63.23  Aligned_cols=73  Identities=16%  Similarity=0.204  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +...|.|.|...+|. +.+.|.++++...|...++.+.   +...||+|.|+.|..+ .|..++++.+|++|.++..+
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~   78 (95)
T 1wia_A            4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECC
Confidence            346688999887775 6899999999999999999887   8999999999999998 99999999999999998764

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=98.34  E-value=2.5e-06  Score=65.07  Aligned_cols=74  Identities=15%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..+-|.|.|....|. +.+.|.++++...|.+.-+++.|++++..|+.|.|+.+..+.|-.+.++.+|++|+.+.
T Consensus        18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~   92 (93)
T 3plu_A           18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   92 (93)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence            456799999988876 79999999999999999999999999999999999999999999999999999999873

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=4.3e-07  Score=68.61  Aligned_cols=76  Identities=9%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ++..|+|+|...+..+.+.|..+++...|....+++.|++++..|++|.|+.|..+.|-.++|+++|++|.+..+.
T Consensus        25 ~~m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           25 GAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             ----CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred             CCcEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence            4456778888733346889999999999999999999999999999999999999999999999999999988753

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=98.28  E-value=5.4e-06  Score=66.90  Aligned_cols=75  Identities=12%  Similarity=0.235  Sum_probs=68.4

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ....+.|.|...+|. +.+.|.++++...|....+.+.|++++..|++|.|..+..+.|..++++.+|++|.+...
T Consensus        17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence            566789999888876 689999999999999999999999999999999999999999999999999999998865

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=98.25  E-value=5.8e-06  Score=61.52  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=68.8

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ....|.|.|...++.+.+.|.++++...|....+++.|++++..|++|.|+.|..+ .|-.++++.+|++|.+..+.
T Consensus        12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~   88 (94)
T 2kan_A           12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS   88 (94)
T ss_dssp             SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred             CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence            34568888888777778999999999999999999999999999999999999988 89999999999999998764

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=97.55  E-value=1.4e-07  Score=66.01  Aligned_cols=70  Identities=16%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|...+|. +.+.|.++++...|....++..|++++..+|+|+|..+..+.|-.++|+.+|++|.+++.
T Consensus         2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            3555565665 678999999999999999999999999999999999999999999999999999998765

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=98.22  E-value=8e-06  Score=64.73  Aligned_cols=75  Identities=7%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +..+.|.|...+|. +.+.|.++++...|....+.+.|++++..+++|+|..+..+.|-.++++.+|++|.+.++.
T Consensus        79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl  154 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL  154 (159)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence            34577777777765 6899999999999999999999999999999999999999999999999999999998764

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=98.21  E-value=6.3e-06  Score=63.91  Aligned_cols=71  Identities=13%  Similarity=0.221  Sum_probs=64.2

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..+..+.|..++|+.+|++|.+..++
T Consensus         2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~   73 (152)
T 3b08_A            2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (152)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence            4667666664 6899999999999999999999999999999999999999999999999999999987653

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=98.21  E-value=7.6e-06  Score=62.11  Aligned_cols=76  Identities=11%  Similarity=0.157  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEeCCce-EEE--EEcCCChHHHHHHHH-HhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGL-KQF--RVYADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~F--rIk~tT~L~KLf~aY-ae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~k  215 (217)
                      ....|.|.|...+|. +.+  .+.++++...|.... ++..|+++...|++|.|+.|..+.|-.++++ .+|++|.++++
T Consensus        16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence            455688888876664 444  666999999999998 7888999999999999999999999999999 99999999987


Q ss_pred             c
Q 027888          216 K  216 (217)
Q Consensus       216 Q  216 (217)
                      +
T Consensus        96 k   96 (98)
T 4a20_A           96 P   96 (98)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=4.5e-06  Score=66.28  Aligned_cols=76  Identities=13%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             CCCcEEEEEE-eCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQ-DKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~-~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +...|+|+|. ..++. +.+.+..++.+..|.+.++...+++.+.+|+.|.|+-|..++|-.++|+++|.+|.+.+.+
T Consensus        12 ~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           12 EDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             CSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred             cCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence            4456888886 55554 7899999999999999999999999999999999999999999999999999999887654

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=98.20  E-value=7.9e-06  Score=62.89  Aligned_cols=73  Identities=10%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      -..|.|..-+|. +.+.|.++++...|....+++.|++++..|++|.|..|..+.|-.++++.+|++|.+..+.
T Consensus         9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~   82 (114)
T 2kdi_A            9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL   82 (114)
T ss_dssp             CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred             cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            345666666665 6899999999999999999999999999999999999999999999999999999998764

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.19  E-value=6.3e-06  Score=60.16  Aligned_cols=74  Identities=9%  Similarity=0.115  Sum_probs=67.3

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcc-cCCCCCccccCCCCCcEEEEEec
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK-IGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~r-I~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ..+.+|.|..-.|. +.+.|.++++...|....+++.|++++..|++|.|+. +..+.|-.++++.+|++|.+.++
T Consensus         8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred             cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence            35678888877775 6899999999999999999999999999999999999 99999999999999999998764

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=98.18  E-value=1.5e-05  Score=57.99  Aligned_cols=72  Identities=13%  Similarity=0.117  Sum_probs=62.8

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.+.+.-.+..+.+.|.++++...|....++..|++++..|++|+|+.|..+.|-.++|+.+|++|.+..++
T Consensus        13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~   84 (85)
T 2kd0_A           13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ   84 (85)
T ss_dssp             EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence            444444444457889999999999999999999999999999999999999999999999999999998764

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=98.13  E-value=1.1e-05  Score=66.20  Aligned_cols=71  Identities=11%  Similarity=0.223  Sum_probs=65.1

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.++++++|++|.+.++.
T Consensus         2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl   73 (169)
T 3l0w_B            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (169)
T ss_dssp             EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEe
Confidence            4667777775 6899999999999999999999999999999999999999999999999999999998764

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=98.13  E-value=1.3e-05  Score=60.80  Aligned_cols=74  Identities=8%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             CcEEEEEEeC---Cce-EEEEEcC-CChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDK---GGL-KQFRVYA-DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~q---dg~-v~FrIk~-tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..|+|.|...   +|. +.+.|.+ +++...|....+...|++++..+++|.|..+..+.|-.++++.+|++|.+.++.
T Consensus        26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~  104 (111)
T 1we6_A           26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence            3588888876   554 7899998 999999999999999999999999999999999999999999999999998753

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=98.12  E-value=1.3e-05  Score=61.35  Aligned_cols=74  Identities=14%  Similarity=0.184  Sum_probs=65.9

Q ss_pred             CcEEEEEEeCC----------ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          143 AKIVVSIQDKG----------GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       143 ~kItIkV~~qd----------g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      ..|+|.|...+          |. +.+.|.++++...|....+...|++++..|++|.|..+..+.|-.++++.+|++|.
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~  103 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH  103 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred             CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence            35777777653          44 67999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecc
Q 027888          212 VHTKK  216 (217)
Q Consensus       212 V~~kQ  216 (217)
                      +.++.
T Consensus       104 lv~rl  108 (115)
T 1we7_A          104 LALKE  108 (115)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            98753

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.10  E-value=1.2e-05  Score=61.72  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +..-|.|.|....|. +.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.+.++.+|.+|++..
T Consensus        25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            445699999987665 78999999999999999999999999999999999999999999999999999998764

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.09  E-value=1.7e-05  Score=57.91  Aligned_cols=74  Identities=14%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             CCcEEEEEEeCCceEEEEEcCC-----ChHHHHHHHHHhhcCCCCcceEEEECCcccCC-CCCccccCCCCCcEEEEEec
Q 027888          142 RAKIVVSIQDKGGLKQFRVYAD-----DKFERLFKMYADKVNLDQENLVFCFDGDKIGP-EATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~t-----T~L~KLf~aYae~~gl~~~slrF~FDG~rI~~-~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ...|+|.|...++...+.|..+     .++..|....+++.|+++...|++|.|..|.. +.|-.++++.+|++|.++..
T Consensus         5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            4568899887655577899985     99999999999999999999999999999987 45899999999999998764

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.05  E-value=1.9e-05  Score=59.06  Aligned_cols=74  Identities=5%  Similarity=0.003  Sum_probs=65.4

Q ss_pred             CCCcEEEEEEeCCceE-EEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v-~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ....|+|+|...+..+ .+.|..++++..|....++..|++++..|++|.|..+..+ |-.++++.+|++|.++..
T Consensus         4 ~~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~   78 (96)
T 1wgg_A            4 GSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             CCcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence            4466888888655456 5999999999999999999999999999999999999888 999999999999987654

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.03  E-value=1.6e-05  Score=60.26  Aligned_cols=73  Identities=11%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             cEEEEEEeCCc----eEEEE--------EcCC-ChHHHHHHHHHhhc--CCCCcc-eEEEECCcccCCCCCccccCCCCC
Q 027888          144 KIVVSIQDKGG----LKQFR--------VYAD-DKFERLFKMYADKV--NLDQEN-LVFCFDGDKIGPEATPASLEMEDN  207 (217)
Q Consensus       144 kItIkV~~qdg----~v~Fr--------Ik~t-T~L~KLf~aYae~~--gl~~~s-lrF~FDG~rI~~~~TP~sLgMEDG  207 (217)
                      .|.|.|...++    ...+.        |.++ ++...|....+.+.  |+++.. .||+|.|+.|..+.|-.++++.+|
T Consensus        12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g   91 (107)
T 1x1m_A           12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG   91 (107)
T ss_dssp             SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred             ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence            45666666565    35677        4444 99999999999999  999999 999999999999999999999999


Q ss_pred             cEEEEEecc
Q 027888          208 DIIEVHTKK  216 (217)
Q Consensus       208 DiIDV~~kQ  216 (217)
                      ++|.++.+.
T Consensus        92 ~~i~lv~~~  100 (107)
T 1x1m_A           92 STVHVLRKS  100 (107)
T ss_dssp             CEEEEEESS
T ss_pred             CEEEEEeCC
Confidence            999998754

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.01  E-value=1.3e-05  Score=59.59  Aligned_cols=74  Identities=12%  Similarity=0.030  Sum_probs=65.3

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ....|+|+|...+..+.+.|..++++..|....+++.|+++...|++|.|..+ .+.|-.++++.+|++|.++..
T Consensus        14 ~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred             CCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence            55678888886554578999999999999999999999999999999999999 556999999999999988764

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.98  E-value=2.6e-05  Score=57.08  Aligned_cols=75  Identities=7%  Similarity=0.050  Sum_probs=64.9

Q ss_pred             CCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHhhc--CCCCcceEEEECCcccCCCCCcccc--CCCCCcEEEEEe
Q 027888          142 RAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV--NLDQENLVFCFDGDKIGPEATPASL--EMEDNDIIEVHT  214 (217)
Q Consensus       142 ~~kItIkV~~qdg~---v~FrIk~tT~L~KLf~aYae~~--gl~~~slrF~FDG~rI~~~~TP~sL--gMEDGDiIDV~~  214 (217)
                      ...|+|.|...++.   +.+.+..+++...|....++..  |++++..|++|.|+.|..+.|-.++  ++.+|.+|.+..
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~   84 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC   84 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence            34577788776664   4566669999999999999998  9999999999999999999999999  999999999876


Q ss_pred             cc
Q 027888          215 KK  216 (217)
Q Consensus       215 kQ  216 (217)
                      +.
T Consensus        85 ~~   86 (93)
T 1wgd_A           85 NV   86 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=97.98  E-value=2.1e-05  Score=66.27  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .+.|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..|..+.|..++++++|++|.+.++.
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrl  178 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  178 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEc
Confidence            488889887775 7899999999999999999999999999999999999999999999999999999998753

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=97.97  E-value=9.6e-07  Score=69.01  Aligned_cols=71  Identities=11%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....++..|++++..+++|.|..|.++.|..++|+.+|++|.++++.
T Consensus         2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl   73 (128)
T 3u5e_m            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (128)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEc
Confidence            4556666665 6899999999999999999999999999999999999999999999999999999988753

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=97.95  E-value=3.1e-05  Score=58.04  Aligned_cols=74  Identities=9%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CcEEEEEEeCC-----ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCC-CCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKG-----GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPE-ATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qd-----g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~-~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ..+.|.|....     ..+.+.|..+++...|....+++.|++++..|++|.|+.|..+ .|-.++++.+|++|.++.+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            44666665532     2357999999999999999999999999999999999999877 69999999999999988754

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=97.90  E-value=2.9e-05  Score=56.93  Aligned_cols=73  Identities=12%  Similarity=0.123  Sum_probs=63.5

Q ss_pred             CcEEEEEEeCCceEEE-EEcCCChHHHHHHHHHhhcCCCCcceEEE---ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          143 AKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       143 ~kItIkV~~qdg~v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ..|+|+|...+..+.+ .|..++++..|....+++.|++++..|++   |.|..+.++.|-.++++.+|++|.++..
T Consensus         6 ~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            6 SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             ceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            4466666654444678 88999999999999999999999999999   9999999899999999999999988754

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=97.83  E-value=4.8e-05  Score=57.74  Aligned_cols=75  Identities=12%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             CCCcEEEEEEeCCceEEEEEc-CCChHHHHHHHHHhhcCCCCcceEEEECCc-----------c----cCCCCCccccCC
Q 027888          141 ERAKIVVSIQDKGGLKQFRVY-ADDKFERLFKMYADKVNLDQENLVFCFDGD-----------K----IGPEATPASLEM  204 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk-~tT~L~KLf~aYae~~gl~~~slrF~FDG~-----------r----I~~~~TP~sLgM  204 (217)
                      +...+.|+|++.+|...+.|. ++.++..|....+++.|+++...++.|.|.           .    +..+.|-.++|+
T Consensus         4 ~~~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi   83 (107)
T 1wf9_A            4 GSSGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL   83 (107)
T ss_dssp             SCCCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred             CCCeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence            345588999999997678899 999999999999999999999999999988           4    367889999999


Q ss_pred             CCCcEEEEEec
Q 027888          205 EDNDIIEVHTK  215 (217)
Q Consensus       205 EDGDiIDV~~k  215 (217)
                      .+|++|.+...
T Consensus        84 ~~G~~L~l~~~   94 (107)
T 1wf9_A           84 AHGSMVYLAYE   94 (107)
T ss_dssp             CTTCEEECCCS
T ss_pred             CCCCEEEEEeC
Confidence            99999987643

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=97.80  E-value=8.4e-05  Score=57.05  Aligned_cols=73  Identities=8%  Similarity=-0.014  Sum_probs=63.0

Q ss_pred             CCcEEEEEEeCC----ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          142 RAKIVVSIQDKG----GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       142 ~~kItIkV~~qd----g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ..-.+|+|...+    +. +.+.|.++.+...|...-+++.|+++...|++|.|+.|.++.|-.+.++.+|.+|-|+.
T Consensus        13 tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~   90 (100)
T 1wju_A           13 TGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             CCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             cceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence            334455555544    33 78999999999999999999999999999999999999999999999999999996654

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=97.79  E-value=8.7e-05  Score=59.77  Aligned_cols=72  Identities=13%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .+.|.|...+|. +.+.|.++.+...|....+.+.|++++..|++|+|+.+..+.|-.++++.+|++|.+.++
T Consensus        96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r  168 (172)
T 3u30_A           96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  168 (172)
T ss_dssp             CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred             cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence            355556666665 689999999999999999999999999999999999999999999999999999998765

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=97.77  E-value=3.5e-06  Score=68.67  Aligned_cols=71  Identities=11%  Similarity=0.223  Sum_probs=0.0

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .|.|...+|. +.+.|.++++...|....+++.|++++..+|+|.|..|..+.|..++++.+|++|.+.++.
T Consensus         2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl   73 (152)
T 3u5c_f            2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (152)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeec
Confidence            4555565664 6899999999999999999999999999999999999999999999999999999988753

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=97.71  E-value=0.00018  Score=56.83  Aligned_cols=71  Identities=10%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEE-E-CCcccCCCCCccccCCCCCcEEEEEec
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFC-F-DGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~-F-DG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +.|.|...+|. +.+.|.++++...|....+...|+++...|++ | .|..+..+.|-.++++.+|++|.+..+
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~   76 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD   76 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence            45667766665 68999999999999999999999999999999 9 799999999999999999999998876

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=97.71  E-value=5.9e-05  Score=55.95  Aligned_cols=72  Identities=10%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             EEEEEEeCCce-EEEEEc--CCChHHHHHHHH-HhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVY--ADDKFERLFKMY-ADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk--~tT~L~KLf~aY-ae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~kQ  216 (217)
                      +.|.|....|. +.+.|.  ++++...|.... +++.|+++...|++|.|+.|..+.|-.++++ .+|.+|.|....
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            45677776665 666655  999999999998 9999999999999999999999999999999 799999998754

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=97.69  E-value=7.8e-05  Score=54.11  Aligned_cols=70  Identities=14%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             EEEEEeCCceEEEE-EcCCChHHHHHHHHHhhcCCCCcceEEEEC--CcccC---CCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGLKQFR-VYADDKFERLFKMYADKVNLDQENLVFCFD--GDKIG---PEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~v~Fr-Ik~tT~L~KLf~aYae~~gl~~~slrF~FD--G~rI~---~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|+|+..+|...+. +..++++..|....+++.|++++..+|+|.  |+.+.   .+.|-.++|+.+|++|.|...
T Consensus         2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            57888888875577 899999999999999999999888888875  47774   578999999999999887654

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=97.68  E-value=5.7e-05  Score=58.23  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCC---------------cceEEEECCcccC-CCCCcccc
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQ---------------ENLVFCFDGDKIG-PEATPASL  202 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~---------------~slrF~FDG~rI~-~~~TP~sL  202 (217)
                      +++..++|.|..-+|. +.+.|.++.+...|..+.+++.|+++               ..+++.|.|+.|. .+.|-.++
T Consensus         3 ~~~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy   82 (105)
T 1v2y_A            3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY   82 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred             CCCCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence            3556789999877775 78999999999999999999998865               4689999999996 56899999


Q ss_pred             CCCCCcEEEEEec
Q 027888          203 EMEDNDIIEVHTK  215 (217)
Q Consensus       203 gMEDGDiIDV~~k  215 (217)
                      |+.+|++|.+...
T Consensus        83 gI~~g~~l~lv~~   95 (105)
T 1v2y_A           83 GIRNRDEVSFIKK   95 (105)
T ss_dssp             TCCSSEEEEEEEC
T ss_pred             CCCCCCEEEEEeh
Confidence            9999999988764

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=97.67  E-value=0.0003  Score=54.44  Aligned_cols=74  Identities=14%  Similarity=0.018  Sum_probs=62.6

Q ss_pred             CCcEEEEEEeCC---ceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCC-CCCcEEEEEec
Q 027888          142 RAKIVVSIQDKG---GLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEM-EDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qd---g~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgM-EDGDiIDV~~k  215 (217)
                      .-.+.|.|.+..   +.+.+.|.++++...|....+++.|+++..-|++|.|+.+.++.|-.+.|+ ++|++|..++-
T Consensus        22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            334555555544   347999999999999999999999999999999999998888999999999 69999988763

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=97.67  E-value=0.00022  Score=52.67  Aligned_cols=73  Identities=14%  Similarity=0.003  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC---cc----cCCCCCccccCCCCCcEEEE
Q 027888          142 RAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       142 ~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG---~r----I~~~~TP~sLgMEDGDiIDV  212 (217)
                      ...|+|.|.+.+.  ...+++.++++...|....+.+.|++++..|++|.|   ..    +.++.|-.++++.+|++|.|
T Consensus         5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v   84 (95)
T 1v6e_A            5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred             CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence            3459999998776  478999999999999999999999999999999976   43    46788999999999999988


Q ss_pred             Ee
Q 027888          213 HT  214 (217)
Q Consensus       213 ~~  214 (217)
                      .-
T Consensus        85 ~d   86 (95)
T 1v6e_A           85 ID   86 (95)
T ss_dssp             BC
T ss_pred             EE
Confidence            64

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=97.63  E-value=0.00034  Score=54.23  Aligned_cols=74  Identities=11%  Similarity=-0.017  Sum_probs=64.4

Q ss_pred             CCCcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC---cc----cCCCCCccccCCCCCcEEE
Q 027888          141 ERAKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG---DK----IGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       141 ~~~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG---~r----I~~~~TP~sLgMEDGDiID  211 (217)
                      ....|+|.|.+.++  .+.++|.++.+...|....+.+.|++++..|+.|.|   ..    ...+.|-.++|+++|.+|.
T Consensus         3 m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih   82 (122)
T 1t0y_A            3 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH   82 (122)
T ss_dssp             CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence            34579999998776  478999999999999999999999999999999977   43    3678899999999999998


Q ss_pred             EEe
Q 027888          212 VHT  214 (217)
Q Consensus       212 V~~  214 (217)
                      |..
T Consensus        83 vvd   85 (122)
T 1t0y_A           83 AVD   85 (122)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            864

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=97.56  E-value=0.00037  Score=52.33  Aligned_cols=73  Identities=10%  Similarity=-0.019  Sum_probs=63.6

Q ss_pred             CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC--Cc---cc-CCCCCccccCCCCCcEEE
Q 027888          141 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFD--GD---KI-GPEATPASLEMEDNDIIE  211 (217)
Q Consensus       141 ~~~kItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD--G~---rI-~~~~TP~sLgMEDGDiID  211 (217)
                      +...|+|.|.+..+   .+.++|.++.+...|...-..+.|+++...|++|.  |.   .+ .++.|-.++++.+|++|.
T Consensus        12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih   91 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH   91 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred             CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence            46789999987665   36899999999999999999999999999999997  44   34 778899999999999998


Q ss_pred             EE
Q 027888          212 VH  213 (217)
Q Consensus       212 V~  213 (217)
                      +.
T Consensus        92 lv   93 (95)
T 2kjr_A           92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=97.45  E-value=0.0005  Score=51.92  Aligned_cols=74  Identities=9%  Similarity=0.003  Sum_probs=64.3

Q ss_pred             CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc---c----cCCCCCccccCCCCCcEE
Q 027888          141 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD---K----IGPEATPASLEMEDNDII  210 (217)
Q Consensus       141 ~~~kItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~---r----I~~~~TP~sLgMEDGDiI  210 (217)
                      +...|+|.|.+...   .+.++|.++.+...|...-..+.|+++...|++|.|.   .    ..++.|-.++++++|++|
T Consensus        11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I   90 (97)
T 2kj6_A           11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL   90 (97)
T ss_dssp             CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred             CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence            56789999987654   3789999999999999999999999999999999884   3    366779999999999999


Q ss_pred             EEEe
Q 027888          211 EVHT  214 (217)
Q Consensus       211 DV~~  214 (217)
                      .+.-
T Consensus        91 hlvd   94 (97)
T 2kj6_A           91 HIID   94 (97)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=97.44  E-value=0.0005  Score=54.25  Aligned_cols=71  Identities=7%  Similarity=0.013  Sum_probs=63.7

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCC-------CCcEEEEEec
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEME-------DNDIIEVHTK  215 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgME-------DGDiIDV~~k  215 (217)
                      |.|+++.....+.+.|..+++...|....+.+.|+++...|++|+|+.|..+.|-.++|+.       .+.+|.+..+
T Consensus         3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            6778876655578899999999999999999999999999999999999999999999999       6888887654

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=97.42  E-value=0.0012  Score=51.64  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhh------cCC--CCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADK------VNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~------~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      ....|.|+|..-.|. +.|.|.++++...|....+..      -|+  ++...||+|.|+.|..+.|-.++++..|+.+-
T Consensus        13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t   92 (116)
T 1wgh_A           13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            345688888876665 789999999999999999984      454  58999999999999999999999999887654


Q ss_pred             EE
Q 027888          212 VH  213 (217)
Q Consensus       212 V~  213 (217)
                      +|
T Consensus        93 lh   94 (116)
T 1wgh_A           93 MH   94 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=97.42  E-value=0.00057  Score=61.56  Aligned_cols=75  Identities=12%  Similarity=0.222  Sum_probs=66.8

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...+.|.|...+|. +.+.|..+++...|....+++.|++++..|++|.|+.|..+.|-.++++.+|++|.+.++.
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL  306 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  306 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence            45678888876664 6899999999999999999999999999999999999999999999999999999998753

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=97.37  E-value=0.0007  Score=53.53  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHh------hcCC--CCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD------KVNL--DQENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae------~~gl--~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      ....|.|+|..-.|. +.|.|.++++...|....++      +-|+  ++..+|++|.|+.|..+.|-.++++..|+.+-
T Consensus        14 ~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           14 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             CTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence            355688999876665 78999999999999999998      5566  47999999999999999999999999999654


Q ss_pred             EE
Q 027888          212 VH  213 (217)
Q Consensus       212 V~  213 (217)
                      ++
T Consensus        94 lh   95 (125)
T 2gow_A           94 MH   95 (125)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=97.37  E-value=0.0011  Score=52.39  Aligned_cols=71  Identities=6%  Similarity=0.012  Sum_probs=64.4

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCC-------CcEEEEEec
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMED-------NDIIEVHTK  215 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMED-------GDiIDV~~k  215 (217)
                      +-|+|+.....+.+.+.++++...|......+.|+++..-|++|+|+.+..+.|-.+.|+.+       +.+|....+
T Consensus         3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            56777777667889999999999999999999999999999999999999999999999999       999876643

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=97.33  E-value=0.00039  Score=63.85  Aligned_cols=74  Identities=7%  Similarity=0.190  Sum_probs=62.7

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHh---hcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYAD---KVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae---~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ...+.|.|+...|. +.+.|..+++...|....+.   +.|++....||+|.|+.|..+.|-.++++.+|++|.+++.
T Consensus         5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~   82 (368)
T 1oqy_A            5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   82 (368)
T ss_dssp             -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred             CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence            44566677776665 68999999999999999998   5679999999999999999999999999999999955543

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.30  E-value=0.00058  Score=51.66  Aligned_cols=72  Identities=4%  Similarity=0.150  Sum_probs=60.2

Q ss_pred             CCCcEEEEEEeCCce---EEEEEcCCChHHHHHHHHHhhc-CCC-CcceEEEECCcccCCCCCcccc--CCCCCcEEEE
Q 027888          141 ERAKIVVSIQDKGGL---KQFRVYADDKFERLFKMYADKV-NLD-QENLVFCFDGDKIGPEATPASL--EMEDNDIIEV  212 (217)
Q Consensus       141 ~~~kItIkV~~qdg~---v~FrIk~tT~L~KLf~aYae~~-gl~-~~slrF~FDG~rI~~~~TP~sL--gMEDGDiIDV  212 (217)
                      ....|.|.|+..++.   +.+.+.++++...|...-+++. |.+ +...|++|.|+.|..+.|-.++  ++.+|.+|.+
T Consensus        20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL   98 (99)
T 2kdb_A           20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL   98 (99)
T ss_dssp             ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence            345688888876653   6788899999999999999865 555 5999999999999999999999  9999999875

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=97.24  E-value=0.002  Score=47.51  Aligned_cols=75  Identities=7%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             CCCcEEEEEEeC---Cce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc-----c--c-CCCCCccccCCCCCc
Q 027888          141 ERAKIVVSIQDK---GGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD-----K--I-GPEATPASLEMEDND  208 (217)
Q Consensus       141 ~~~kItIkV~~q---dg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~-----r--I-~~~~TP~sLgMEDGD  208 (217)
                      ....|+|.|.+.   ++. +..++..+.+...|...-+..+|+++...++.|.+.     .  + ....|-.++++++|+
T Consensus         6 ~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~   85 (97)
T 1wjn_A            6 SGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGD   85 (97)
T ss_dssp             SSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred             cCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence            456788888764   344 688999999999999999999999999999998632     2  3 456788999999999


Q ss_pred             EEEEEec
Q 027888          209 IIEVHTK  215 (217)
Q Consensus       209 iIDV~~k  215 (217)
                      +|.|...
T Consensus        86 ~I~V~d~   92 (97)
T 1wjn_A           86 CLLVRWS   92 (97)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            9988764

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.20  E-value=0.00031  Score=51.14  Aligned_cols=70  Identities=14%  Similarity=0.329  Sum_probs=56.1

Q ss_pred             cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcc---c--CCCCCccccCCCCCcEEEEE
Q 027888          144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDK---I--GPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~r---I--~~~~TP~sLgMEDGDiIDV~  213 (217)
                      .+.|+|++.+|...+.+.+++++..|++.-++..+++.....+++.-.+   |  ..+.|-.+||+..||+|-+.
T Consensus         4 ~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            4 SIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            4779999999987788999999999999999999998655444443332   3  37889999999999998764

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=96.98  E-value=0.0041  Score=45.63  Aligned_cols=72  Identities=11%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             cEEEEEEeCC-c-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-------CCcccCCCCCccccCCCCCcEEEEE
Q 027888          144 KIVVSIQDKG-G-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF-------DGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       144 kItIkV~~qd-g-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-------DG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      .|+|.|.... + . ...|+.++.+...|...-..+.|+++...|+.|       -|..+..+.|-.++++++|.+|.+.
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv   81 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV   81 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence            3667776543 2 3 478999999999999999999999999999996       4788899999999999999999886


Q ss_pred             ec
Q 027888          214 TK  215 (217)
Q Consensus       214 ~k  215 (217)
                      -.
T Consensus        82 d~   83 (86)
T 4b6w_A           82 DL   83 (86)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=96.87  E-value=0.005  Score=48.98  Aligned_cols=68  Identities=9%  Similarity=0.047  Sum_probs=58.5

Q ss_pred             CCcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHh-----hcCCCC--cceEEEECCcccCCCCCccccCCCCCcE
Q 027888          142 RAKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYAD-----KVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDI  209 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae-----~~gl~~--~slrF~FDG~rI~~~~TP~sLgMEDGDi  209 (217)
                      .+.+.|+|+.-+|. + .+.+.++++...|...-+.     +-|+++  +..||+|.|+.|..+.|-.++++..|+.
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~   90 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL   90 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence            36788999888874 6 6999999999999998854     446665  8999999999999999999999999964

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.81  E-value=0.0033  Score=46.19  Aligned_cols=71  Identities=13%  Similarity=0.151  Sum_probs=59.8

Q ss_pred             CCcEEEEEEeCCce-E--EE-EEcCCChHHHHHHHHHhh-cCCCCcceEEEEC--CcccCCCCCccccCCCCCcEEEE
Q 027888          142 RAKIVVSIQDKGGL-K--QF-RVYADDKFERLFKMYADK-VNLDQENLVFCFD--GDKIGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v--~F-rIk~tT~L~KLf~aYae~-~gl~~~slrF~FD--G~rI~~~~TP~sLgMEDGDiIDV  212 (217)
                      ...+.|.|....|. .  .+ .|.++++...|....++. .|++++..|+.|.  |..|..+.|-.++++.+|.+|.+
T Consensus         8 ~~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A            8 MKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CCCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             eEEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            34577888876653 2  47 899999999999999994 7999988888876  99999999999999999998755

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=96.73  E-value=0.0043  Score=55.70  Aligned_cols=74  Identities=16%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEE---ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .+.|+|+|...+..+.+.|..+++...|...-++..|+++..-+++   |.|..+..+.|-.++++.+|.+|.++..
T Consensus         3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs   79 (320)
T 3shq_A            3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS   79 (320)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence            4568888887665678999999999999999999999999999999   8999999999999999999999987643

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.08  E-value=0.014  Score=44.18  Aligned_cols=70  Identities=10%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|...++. ..++|.+++.|..+.+.-|+++|++...+.+.|+++.|..+..---.||-+|-.++....
T Consensus        11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A           11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence            6778888885 799999999999999999999999999999999999999988888889999988887653

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.81  E-value=0.02  Score=43.46  Aligned_cols=71  Identities=7%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE-CCcccCCCCCccccCCCCCcEEEEEe
Q 027888          144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF-DGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F-DG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      -+.+++.-.++.+.+.|..+++...|...-+++.|+++..-+++| .|.++.++.|-.++++..|.+|.+..
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl   80 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLT   80 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECC
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEe
Confidence            466666666666789999999999999999999999998888876 44448888899999999999987653

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.78  E-value=0.023  Score=41.99  Aligned_cols=71  Identities=10%  Similarity=0.149  Sum_probs=58.8

Q ss_pred             CCcEEEEEEe---CCceEEEEEcCCChHHHHHHHHHhhcCCCCc-----ceEEEECCcccCCCCCccccCCCCCcEEEE
Q 027888          142 RAKIVVSIQD---KGGLKQFRVYADDKFERLFKMYADKVNLDQE-----NLVFCFDGDKIGPEATPASLEMEDNDIIEV  212 (217)
Q Consensus       142 ~~kItIkV~~---qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~-----slrF~FDG~rI~~~~TP~sLgMEDGDiIDV  212 (217)
                      +.+|+|++..   .++.+-+||...-++++|...-.+.++++..     .+|..-.|.-+.++++-.+.++.|||+|++
T Consensus         2 ~~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            2 GSYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             CCEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             CcEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            4688888875   4445789999999999999999999998652     344444688888999999999999999987

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=94.77  E-value=0.0051  Score=51.98  Aligned_cols=64  Identities=11%  Similarity=0.105  Sum_probs=0.0

Q ss_pred             EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      |.|..-+|. +.+.|.++++...|....+...|+++...||+|.|..|..+.|-.     +|.+|.+.+.
T Consensus         3 I~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9            3 VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             EEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence            445544554 689999999999999999999999999999999999998877755     8888887654

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=94.46  E-value=0.32  Score=33.89  Aligned_cols=62  Identities=23%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             cEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       144 kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      .++|+|.++.+...+.+...+++..|.+..    +++...+.+..||.-+..+.     -+.+||.|+++.
T Consensus         4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR   65 (70)
T ss_dssp             CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred             eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence            367888888877777888888888888754    67788899999999997665     799999999874

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=91.87  E-value=1.5  Score=31.29  Aligned_cols=72  Identities=11%  Similarity=0.188  Sum_probs=56.7

Q ss_pred             CCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCccc---CCCCCccccCCCCCcEEEEEe
Q 027888          142 RAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       142 ~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ....+|.|+-.+|. +.-+...+++++.|+..-.. .+.+...++|.-  =.+.+   ..+.|-.++||-.+.++-|-.
T Consensus         5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            45678888888986 77788899999999885544 677778888884  35667   357899999999999887754

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=91.47  E-value=1.5  Score=37.16  Aligned_cols=72  Identities=7%  Similarity=0.076  Sum_probs=56.8

Q ss_pred             cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEE-C----CcccC-CCCCccccCCCCCcEEEEE
Q 027888          144 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIG-PEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       144 kItIkV~~qdg--~-v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~F-D----G~rI~-~~~TP~sLgMEDGDiIDV~  213 (217)
                      .+.|++.....  . +.+.+.+..++..|++.-|+.++++.+ .+|++. .    ...|. .+.|..++++.+|..|-+=
T Consensus       139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE  218 (231)
T 3jyu_A          139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE  218 (231)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred             cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence            45666655443  2 468889999999999999999999986 799998 2    34565 4689999999999998765


Q ss_pred             ec
Q 027888          214 TK  215 (217)
Q Consensus       214 ~k  215 (217)
                      ++
T Consensus       219 ~r  220 (231)
T 3jyu_A          219 PQ  220 (231)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=91.39  E-value=0.88  Score=34.35  Aligned_cols=77  Identities=9%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             CCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC--CCCCccccCCCCCcEE
Q 027888          136 SKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG--PEATPASLEMEDNDII  210 (217)
Q Consensus       136 ~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~--~~~TP~sLgMEDGDiI  210 (217)
                      +++.+....++|.|+-.+|. +.-+...+++++.|+.... ..+.....++|.-  =.+.+.  .+.|-+++||-...++
T Consensus        15 EP~~~~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L   93 (109)
T 2cr5_A           15 EPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL   93 (109)
T ss_dssp             CCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred             CCCCCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence            33343457899999999986 6778889999999987544 4465667777764  355564  4789999999999888


Q ss_pred             EEE
Q 027888          211 EVH  213 (217)
Q Consensus       211 DV~  213 (217)
                      -|-
T Consensus        94 ~Ve   96 (109)
T 2cr5_A           94 NVE   96 (109)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=90.27  E-value=1  Score=31.33  Aligned_cols=52  Identities=19%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             EEEcCCChHHHHHHHHHhhcCCCC--cceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          158 FRVYADDKFERLFKMYADKVNLDQ--ENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       158 FrIk~tT~L~KLf~aYae~~gl~~--~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +.+ ..+++..|++..+.+.++..  ..+.+..||+.|...+|+    +.+||.|.++.
T Consensus        16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~----l~~gDeV~i~P   69 (74)
T 3rpf_C           16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP----LKDGDVISLLP   69 (74)
T ss_dssp             EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC----CCTTCEEEEEC
T ss_pred             Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC----CCCCCEEEEEC
Confidence            344 56789999998887655432  789999999998755554    99999999874

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=89.61  E-value=1.2  Score=33.69  Aligned_cols=51  Identities=6%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             cEEEEEEeCCc-e-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC
Q 027888          144 KIVVSIQDKGG-L-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG  194 (217)
Q Consensus       144 kItIkV~~qdg-~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~  194 (217)
                      ...|.|-+-.. . ++|-|.++.++..+.+.-+++.|+++.+-+++|.|+.+.
T Consensus        12 rkvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~   64 (94)
T 4efo_A           12 RMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV   64 (94)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred             ceeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence            45677777554 3 689999999999999999999999999999999997765

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.55  E-value=1.4  Score=33.24  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=55.9

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEEC---CcccCCCCCccccCCCC
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFD---GDKIGPEATPASLEMED  206 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FD---G~rI~~~~TP~sLgMED  206 (217)
                      +-..+.+.|.....+ ...||.+..+|+.|+-+-|++..+++.++.|+-+   ++.|.-+.+-.+|||..
T Consensus         7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A            7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            446677777777766 4789999999999999999999999999999875   66777888888888875

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=87.60  E-value=1  Score=35.36  Aligned_cols=44  Identities=9%  Similarity=0.233  Sum_probs=36.6

Q ss_pred             EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCc
Q 027888          156 KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATP  199 (217)
Q Consensus       156 v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP  199 (217)
                      ..|||.++++|..|+...|+.+|++++.+|||+--.|=+.+.=|
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp  101 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP  101 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCC
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCC
Confidence            47999999999999999999999999999999965543433333

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=87.40  E-value=2.5  Score=35.38  Aligned_cols=72  Identities=10%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             cEEEEEEeCCc--e-EEEEEcCCChHHHHHHHHHhhcCCCCc-ceEEEE-C----CcccCC-CCCccccCCCCCcEEEEE
Q 027888          144 KIVVSIQDKGG--L-KQFRVYADDKFERLFKMYADKVNLDQE-NLVFCF-D----GDKIGP-EATPASLEMEDNDIIEVH  213 (217)
Q Consensus       144 kItIkV~~qdg--~-v~FrIk~tT~L~KLf~aYae~~gl~~~-slrF~F-D----G~rI~~-~~TP~sLgMEDGDiIDV~  213 (217)
                      .+.|++.....  . +.+.+.+..++..|++.-|+.++++.+ .+|++. .    ...|.. +.|..+++|.+|..|-+=
T Consensus       127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE  206 (217)
T 4a3p_A          127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE  206 (217)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred             ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence            45566654443  2 578999999999999999999999986 799986 2    334444 579999999999999765


Q ss_pred             ec
Q 027888          214 TK  215 (217)
Q Consensus       214 ~k  215 (217)
                      ++
T Consensus       207 ~r  208 (217)
T 4a3p_A          207 QK  208 (217)
T ss_dssp             EC
T ss_pred             Ee
Confidence            54

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=86.11  E-value=1.9  Score=31.87  Aligned_cols=48  Identities=10%  Similarity=0.142  Sum_probs=42.8

Q ss_pred             CcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc
Q 027888          143 AKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD  191 (217)
Q Consensus       143 ~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~  191 (217)
                      ..++|+|+.+ -.+-++|.+..+|..|.+.-+++.+++.+.+++.|.-.
T Consensus         4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            3489999998 46899999999999999999999999999999999543

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=86.10  E-value=6.1  Score=29.70  Aligned_cols=75  Identities=11%  Similarity=0.035  Sum_probs=58.1

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC---CCCCccccCCCCCcEEEEE
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG---PEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~---~~~TP~sLgMEDGDiIDV~  213 (217)
                      +.....+|.|+-.+|. +.-+...+++++.|++......+.....+.|.-  =-+.+.   .+.|-++|||-...++-|.
T Consensus         9 ~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~   88 (109)
T 2dzk_A            9 DRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL   88 (109)
T ss_dssp             CCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence            3556789999998986 788899999999999987777777667777764  344454   3679999999998777665


Q ss_pred             e
Q 027888          214 T  214 (217)
Q Consensus       214 ~  214 (217)
                      .
T Consensus        89 ~   89 (109)
T 2dzk_A           89 P   89 (109)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=85.06  E-value=3.7  Score=31.57  Aligned_cols=62  Identities=11%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             cCCCCcCCCCcEEEEEEeCCceEEEEEcC--CChHHHHHHHHHhhcCCCCcceEEEE---CCcccCCCC
Q 027888          134 KVSKPAIERAKIVVSIQDKGGLKQFRVYA--DDKFERLFKMYADKVNLDQENLVFCF---DGDKIGPEA  197 (217)
Q Consensus       134 ~~~~p~~~~~kItIkV~~qdg~v~FrIk~--tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI~~~~  197 (217)
                      ++..|.+....++|+|..++....|.|.-  ++++..|.......+|++  ++++.|   +|+.|+-+.
T Consensus         4 ~~~~~~~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~S   70 (101)
T 1wj6_A            4 GSSGPHSMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINS   70 (101)
T ss_dssp             SSCCCCSSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCS
T ss_pred             CCCCccccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEec
Confidence            34555557789999999998877888855  999999999999999986  667766   677766543

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=84.84  E-value=4.2  Score=30.23  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=41.3

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCC-cceEEEE
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQ-ENLVFCF  188 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~-~slrF~F  188 (217)
                      +..|+||+..++..+.|+|..+..|..|.+.-+++.++.. ..|++.|
T Consensus         4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky   51 (89)
T 1vd2_A            4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW   51 (89)
T ss_dssp             SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred             CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            4568999998876679999999999999999999999976 5599988

>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A

Probab=83.70  E-value=4.7  Score=30.23  Aligned_cols=74  Identities=16%  Similarity=0.238  Sum_probs=58.3

Q ss_pred             CCCcEEEEEEeCC--c-e-EEEEEcCCChHHHHHHHHHhhcCCCCcce-EEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          141 ERAKIVVSIQDKG--G-L-KQFRVYADDKFERLFKMYADKVNLDQENL-VFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       141 ~~~kItIkV~~qd--g-~-v~FrIk~tT~L~KLf~aYae~~gl~~~sl-rF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ...+++.++.-..  . . ..+.|-..+||..+.+.-|+.+++++.+. ...-||.-|++.+|....=|+.|-.+....
T Consensus         7 ~~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIP   85 (92)
T 1j0g_A            7 TMSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIP   85 (92)
T ss_dssp             CSCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEE
T ss_pred             CCceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecc
Confidence            3467887776322  2 2 47899999999999999999999988554 444589999999999988888887776654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=80.46  E-value=6.9  Score=30.23  Aligned_cols=72  Identities=15%  Similarity=0.144  Sum_probs=55.4

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCccc---CCCCCccccCCCCCcEEEEE
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKI---GPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI---~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ....++|.|+-.+|. +.-+...++++..|+..-... +.....+.|+-  =.+.+   ..+.|-.+|||-....+-|.
T Consensus        40 ~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           40 NGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            456799999999986 788888999999999866555 77777787774  36666   34789999999886665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1wm3a_	72	d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId:	5e-17
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	6e-14
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	9e-13

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (173), Expect = 5e-17
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 145 IVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLE 203
           I + +  + G   QF++       +L K Y ++  L    + F FDG  I    TPA LE
Sbjct: 2   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61

Query: 204 MEDNDIIEVH 213
           MED D I+V 
Sbjct: 62  MEDEDTIDVF 71

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (152), Expect = 6e-14
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 144 KIVVSIQDKGGLK-QFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASL 202
            I + +  +   +  F+V      ++L + Y  +  +   +L F F+G +I    TP  L
Sbjct: 2   YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61

Query: 203 EMEDNDIIEVHTKKT 217
            ME+ D+IEV+ ++T
Sbjct: 62  GMEEEDVIEVYQEQT 76

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 59.4 bits (144), Expect = 9e-13
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 144 KIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLE 203
            I + + D      F++       RL + +A +   + ++L F +DG +I  + TP  L+
Sbjct: 4   HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLD 63

Query: 204 MEDNDIIEVH 213
           MEDNDIIE H
Sbjct: 64  MEDNDIIEAH 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.89
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.86
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	98.81
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	98.71
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	98.7
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.66
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	98.6
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	98.59
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	98.55
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	98.55
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	98.53
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	98.51
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	98.48
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	98.47
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	98.37
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	98.35
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	98.26
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	98.25
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	98.23
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	98.21
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	98.16
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	98.13
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	98.08
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	98.07
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	97.98
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	97.97
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	97.95
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	97.94
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	97.94
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	97.88
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	97.59
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	97.26
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	97.17
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	97.0
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	96.81
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	96.05
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.86
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	92.38
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	88.71
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.65
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.22
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	85.76
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	82.35

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.7e-25  Score=157.84  Aligned_cols=71  Identities=34%  Similarity=0.611  Sum_probs=68.8

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ||+|+|++++|. ++|+|+++++|++||++||++.|+++++++|+|||++|.+++||++|||||||+|+||.
T Consensus         1 ~I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~~   72 (72)
T d1wm3a_           1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ   72 (72)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence            799999999986 89999999999999999999999999999999999999999999999999999999984

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.2e-24  Score=153.40  Aligned_cols=75  Identities=27%  Similarity=0.490  Sum_probs=72.4

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      ++|+|+|++++|. ++|+|+++++|++||++||++.|+++++++|+|+|.+|.+++||++|+|+|||+|+|+++|.
T Consensus         1 e~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             CEEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            4799999999986 79999999999999999999999999999999999999999999999999999999999985

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.86  E-value=4.6e-22  Score=143.90  Aligned_cols=77  Identities=30%  Similarity=0.552  Sum_probs=72.8

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      +.++|+|+|.+.+++++|+|+++++|++||++||++.|++++.++|+|+|++|.+++||.+|+|+|||+|+|+++|.
T Consensus         1 p~~~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~   77 (79)
T d1euvb_           1 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   77 (79)
T ss_dssp             CCSEEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCB
T ss_pred             CCcEEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEecc
Confidence            35799999988666789999999999999999999999999999999999999999999999999999999999884

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2e-08  Score=74.58  Aligned_cols=75  Identities=16%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ....|+|+|...++...|.|..+++...|....+.+.|+++...+|+|+|+.|..+.|-.++|+++|++|.+.++
T Consensus        29 ~~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            556799999988877789999999999999999999999999999999999999999999999999999998764

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.5e-08  Score=72.58  Aligned_cols=75  Identities=16%  Similarity=0.257  Sum_probs=69.9

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +..|.|+|...++...|.|.++++...|....+++.|+++...|++|.|+.|..+.|..++|+++|++|.++++.
T Consensus         8 ~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           8 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            566999999888777899999999999999999999999999999999999999999999999999999988764

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.4e-08  Score=70.19  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             CCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          142 RAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       142 ~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ...|.|.|...++...|.|.++.+...|....+++.|+++...+++|.|..+..+.|-.++|+.+|++|.+.+++
T Consensus         5 ~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~   79 (84)
T d1yqba1           5 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR   79 (84)
T ss_dssp             TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECC
T ss_pred             CCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECC
Confidence            346999999888777899999999999999999999999999999999999999999999999999999988775

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.9e-08  Score=69.75  Aligned_cols=74  Identities=9%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .-|.|+|+..+|. +.+.|.++++...|....+++.|++++..||+|.|+.|..+.|-.++++.+|++|.+.+++
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~   76 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQ   76 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecC
Confidence            4588899888876 7899999999999999999999999999999999999999999999999999999998875

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=9.9e-08  Score=66.53  Aligned_cols=72  Identities=10%  Similarity=0.169  Sum_probs=66.7

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      |+|+|...++...+.|.++.+...|....+.+.|+++...|++|.|+.|..+.|-.++|+.+|++|.+..+|
T Consensus         2 i~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~~   73 (73)
T d2bwfa1           2 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   73 (73)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEeeC
Confidence            778888776667899999999999999999999999999999999999999999999999999999887664

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.6e-07  Score=65.58  Aligned_cols=73  Identities=7%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +.|.|.|+..+|. +.+.|.++++...|....+++.|++++..|++|.|+.+..+.|-.+.|+++|++|.+.++
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            4578889888876 789999999999999999999999999999999999999999999999999999988764

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=7.8e-08  Score=67.27  Aligned_cols=70  Identities=17%  Similarity=0.262  Sum_probs=65.6

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |.|.|....|. +.+.|.++++...|...-+.+.|++++..++.|+|+.+..+.|-++.|+.+|++|..+.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            67888888776 78999999999999999999999999999999999999999999999999999998863

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.4e-07  Score=66.48  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .+..+.|.|+..+|. +.+.|.++++...|....+.+.|++++..||+|.|+.|..+.|-.++++++|++|.+..++
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~   80 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK   80 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecC
Confidence            566788888888876 7899999999999999999999999999999999999999999999999999999988764

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.3e-07  Score=70.71  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      ....|.|.|.+..|. +.+.|.++++...|.+..+.+.|++++..||+|.|+.|..+.|-.+.|+.+|++|..|.
T Consensus        25 ~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             CCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEE
Confidence            556799999998775 89999999999999999999999999999999999999999999999999999999875

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-07  Score=66.66  Aligned_cols=72  Identities=7%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             cEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcC---CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          144 KIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVN---LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       144 kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~g---l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|+|.|..-+|. +.+.|.++++...|....+.+.|   ++++..||+|.|+.|..+.|-.++|+.+|++|-++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~vs   77 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   77 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEEC
Confidence            366777777775 78999999999999999999988   7889999999999999999999999999999988763

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4e-07  Score=63.97  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .|+|..-+|. +.+.|.++++...|...-+.+.|++++..|++|  .|+.|..+.|-.++|+.+|++|.++++||
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~s   76 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKS   76 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEECC
Confidence            4667776775 789999999999999999999999999999999  59999999999999999999999999986

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.7e-07  Score=63.78  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|+..+|. +.+.|.++++...|....+.+.|++++..+|+|.|+.+..+.|-.++++++|.+|.+.++
T Consensus         2 qI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             EEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEe
Confidence            4667777765 789999999999999999999999999999999999999999999999999999998875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.48  E-value=3.9e-07  Score=63.19  Aligned_cols=70  Identities=10%  Similarity=0.283  Sum_probs=63.7

Q ss_pred             EEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|..-+|. +.+.|.++++...|....+++.|+++...||.|.|+.+..+.|-.++++++|++|.+.++
T Consensus         2 ~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           2 LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEee
Confidence            3566666765 789999999999999999999999999999999999999999999999999999988764

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.1e-07  Score=63.29  Aligned_cols=72  Identities=14%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             EEEEEeCCce--EEE-EEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          146 VVSIQDKGGL--KQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       146 tIkV~~qdg~--v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .|.|+.-+|.  ..+ .+.++++...|....+++.|++++..||.|.|+.+..+.|-.+.|+++|++|.+.+++|
T Consensus         2 ~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~s   76 (76)
T d2faza1           2 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   76 (76)
T ss_dssp             EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             EEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEcC
Confidence            4666777763  444 59999999999999999999999999999999999999999999999999999999876

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=1.2e-06  Score=61.82  Aligned_cols=72  Identities=15%  Similarity=0.278  Sum_probs=65.5

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.|.|+..+|. +.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.++++++|.+|.+..+-
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~   75 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP   75 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESS
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEecc
Confidence            45777776665 7899999999999999999999999999999999999999999999999999999987653

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1e-06  Score=63.54  Aligned_cols=63  Identities=13%  Similarity=0.165  Sum_probs=59.7

Q ss_pred             eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEeccC
Q 027888          155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      .+.|.|.++++.+.|....+++.|++++..+++|.|+.|..+.|-.+.|+.+|++|.+.++.+
T Consensus        23 ~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          23 VLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCC
T ss_pred             EEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            368999999999999999999999999999999999999999999999999999999988753

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.9e-06  Score=61.39  Aligned_cols=70  Identities=7%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcC---CCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVN---LDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~g---l~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      |.|+.-+|. +.+.|.++++...|....+++.|   ++++..||+|.|+.|..+.|-.++|+.+|++|-+++.+
T Consensus         3 I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~   76 (95)
T d1uela_           3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             EEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECC
Confidence            455566665 78999999999999999998876   67899999999999999999999999999999988754

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=60.90  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             EEEEEeCCc--eEEE-EEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          146 VVSIQDKGG--LKQF-RVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       146 tIkV~~qdg--~v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .|.|+.-+|  ...+ .|.++++...|....+++.|++.+..||+|.|+.+..+.|-.+.|+++|++|.+.++
T Consensus         2 ~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~r   74 (76)
T d1wy8a1           2 WIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR   74 (76)
T ss_dssp             EEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred             EEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEc
Confidence            355666565  3454 799999999999999999999999999999999999999999999999999998775

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=2.3e-06  Score=62.58  Aligned_cols=75  Identities=5%  Similarity=0.001  Sum_probs=67.8

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ++...|+|+|...++. ..+.|.++.+...|....++..|+++...|++|.|+.|.. .|-.++|+.+|++|-++..
T Consensus         3 s~s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d-~tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           3 SGSSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-DDWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             SCCCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCS-SCCCSCCCCSSCEEECCCC
T ss_pred             CCCCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCC-CcHHHCCCCCCCEEEEEee
Confidence            4678899999988876 4699999999999999999999999999999999999986 5999999999999988643

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=2.8e-06  Score=64.78  Aligned_cols=74  Identities=15%  Similarity=0.150  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHH--------HhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEE
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMY--------ADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIE  211 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aY--------ae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiID  211 (217)
                      +...|+|+|+.-+|. ..|.|.++++...|....        +++.|+++...|++|.|+.|..+.|-.++++.+|.++.
T Consensus        13 ~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~   92 (116)
T d1wgha_          13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV   92 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred             CCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEE
Confidence            457899999988876 689999999999999988        46788999999999999999999999999999999866


Q ss_pred             EEe
Q 027888          212 VHT  214 (217)
Q Consensus       212 V~~  214 (217)
                      +|+
T Consensus        93 lhl   95 (116)
T d1wgha_          93 MHL   95 (116)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=2.3e-06  Score=63.59  Aligned_cols=76  Identities=12%  Similarity=0.148  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEeCC--ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC-CCCCccccCCCCCcEEEEEecc
Q 027888          141 ERAKIVVSIQDKG--GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG-PEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       141 ~~~kItIkV~~qd--g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~-~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      .+.+|+|.+..++  +. +.+.|.+++++..|......+.|++++..+++|+|+.|. ++.|-.++|+.+|++|.+..+.
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~   85 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECC
Confidence            3445555544333  44 689999999999999999999999999999999999996 5679999999999999887653

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.6e-06  Score=59.20  Aligned_cols=73  Identities=15%  Similarity=0.256  Sum_probs=62.8

Q ss_pred             EEEEEEeCCceEEEEE-----cCCChHHHHHHHHHhhcCCCCcceEEEECCcccC-CCCCccccCCCCCcEEEEEeccC
Q 027888          145 IVVSIQDKGGLKQFRV-----YADDKFERLFKMYADKVNLDQENLVFCFDGDKIG-PEATPASLEMEDNDIIEVHTKKT  217 (217)
Q Consensus       145 ItIkV~~qdg~v~FrI-----k~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~-~~~TP~sLgMEDGDiIDV~~kQ~  217 (217)
                      |+|+|...+....+.|     ..++++..|...-+...|++++..+++|+|..+. .+.|-.++|+.+|+.|-+..+++
T Consensus         2 i~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~~   80 (81)
T d1wxva1           2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN   80 (81)
T ss_dssp             EEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred             EEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEecC
Confidence            6788877665544555     5789999999999999999999999999999996 56799999999999999987753

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2e-06  Score=59.77  Aligned_cols=70  Identities=13%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             EEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          145 IVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       145 ItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +.|.|+.-+|. +.+.|.++++...|....+++.|++++..||.|.|+.|..+.|-.++++ +|.+|.+..+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEec
Confidence            46778877775 7899999999999999999999999999999999999999999999999 5788876554

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.1e-05  Score=58.93  Aligned_cols=75  Identities=8%  Similarity=0.111  Sum_probs=64.8

Q ss_pred             CCCCcEEEEEEeCC---ce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC--------CCCCccccCCCCC
Q 027888          140 IERAKIVVSIQDKG---GL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG--------PEATPASLEMEDN  207 (217)
Q Consensus       140 ~~~~kItIkV~~qd---g~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~--------~~~TP~sLgMEDG  207 (217)
                      +.+..|+|+|...+   +. +..+|..+.+...|...-...+|++.+..|++|.|.+..        ++.|-.++|++||
T Consensus         5 ss~~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg   84 (97)
T d1wjna_           5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENG   84 (97)
T ss_dssp             SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTT
T ss_pred             cCCCeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCC
Confidence            35678999998755   23 689999999999999999999999999999999887533        6789999999999


Q ss_pred             cEEEEEe
Q 027888          208 DIIEVHT  214 (217)
Q Consensus       208 DiIDV~~  214 (217)
                      ++|.|+.
T Consensus        85 ~~I~V~~   91 (97)
T d1wjna_          85 DCLLVRW   91 (97)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEe
Confidence            9999864

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=1.5e-05  Score=60.04  Aligned_cols=72  Identities=8%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             EEEEEEe---CCce-EEEEEcC-CChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEecc
Q 027888          145 IVVSIQD---KGGL-KQFRVYA-DDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       145 ItIkV~~---qdg~-v~FrIk~-tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      ++|+|+-   .+|. +.+.|.+ +++...|....+++.|++++..|++|.|+.|..+.|-.++++++|++|.+.++-
T Consensus        28 ~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~  104 (111)
T d1we6a_          28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             EEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeC
Confidence            5555553   3354 7899986 899999999999999999999999999999999999999999999999988764

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=3.2e-05  Score=57.75  Aligned_cols=76  Identities=8%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             CCCcEEEEEEeCCce-E-EEEEcCCChHHHHHHHHHhh-----cCCC--CcceEEEECCcccCCCCCccccCCCCCc---
Q 027888          141 ERAKIVVSIQDKGGL-K-QFRVYADDKFERLFKMYADK-----VNLD--QENLVFCFDGDKIGPEATPASLEMEDND---  208 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v-~FrIk~tT~L~KLf~aYae~-----~gl~--~~slrF~FDG~rI~~~~TP~sLgMEDGD---  208 (217)
                      ....|.|+|+..+|. + .|+|.++++...|....+..     .|++  ++..|++|.|+.|..+.|-.+.++.+|+   
T Consensus         4 ~~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           4 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred             ccceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCC
Confidence            467899999999985 7 59999999999999998775     5665  6899999999999999999999999999   


Q ss_pred             ---EEEEEecc
Q 027888          209 ---IIEVHTKK  216 (217)
Q Consensus       209 ---iIDV~~kQ  216 (217)
                         +|.+.+++
T Consensus        84 ~~~tmHlVvrp   94 (101)
T d1se9a_          84 AVTTMHVIIQA   94 (101)
T ss_dssp             CCEEEEEEECC
T ss_pred             CceEEEEEeCC
Confidence               77777654

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.95  E-value=6.8e-06  Score=59.93  Aligned_cols=74  Identities=12%  Similarity=0.056  Sum_probs=67.2

Q ss_pred             CCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ..+.|.|+|...+..+.+.|.++++...|....++..|++++..+++|.|. +..+.|-.++++.+|.+|.++..
T Consensus        14 ~~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCS
T ss_pred             CccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEec
Confidence            567899999976666789999999999999999999999999999999996 88999999999999999988643

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=8.3e-06  Score=60.26  Aligned_cols=61  Identities=10%  Similarity=-0.002  Sum_probs=58.1

Q ss_pred             eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          155 LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       155 ~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      .+.+.|..+.+...|....+++.|+++..++++|.|+.|..+.|-.++|+.+|++|.|+..
T Consensus        31 ~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          31 KNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             SEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEc
Confidence            3789999999999999999999999999999999999999999999999999999987764

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=3.2e-05  Score=56.63  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=64.0

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccC-CCCCccccCCCCCcEEEEEecc
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIG-PEATPASLEMEDNDIIEVHTKK  216 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~-~~~TP~sLgMEDGDiIDV~~kQ  216 (217)
                      +.+..|+|+|..-++. ..+.|.++.+...|....   ..++.+..|++|.|+.|. ...|-.++++++|++|.+++.+
T Consensus         3 ~~~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i---~~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~   78 (95)
T d1wiaa_           3 SGSSGINVRLKFLNDTEELAVARPEDTVGTLKSKY---FPGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSP   78 (95)
T ss_dssp             CCCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHH---SSSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCC
T ss_pred             CCCCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHH---hcCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcC
Confidence            3678899999998876 689999999999998654   466789999999999997 5689999999999999998764

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=1.7e-05  Score=56.85  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEeCCceEEE-EEcCCChHHHHHHHHHhhcCCCCcceEEE---ECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          141 ERAKIVVSIQDKGGLKQF-RVYADDKFERLFKMYADKVNLDQENLVFC---FDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       141 ~~~kItIkV~~qdg~v~F-rIk~tT~L~KLf~aYae~~gl~~~slrF~---FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      ++..|+|+|...++...+ .|..+++...|....+++.|++++..+++   |.|..+.++.|-.++++.+|++|.+..+
T Consensus         4 ~s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           4 GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             CCCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEee
Confidence            456677777766666655 69999999999999999999999999998   7999999999999999999999988754

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=1.9e-05  Score=58.58  Aligned_cols=76  Identities=17%  Similarity=0.180  Sum_probs=65.5

Q ss_pred             CCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCc---------------ceEEEECCcccCCC-CCcccc
Q 027888          140 IERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQE---------------NLVFCFDGDKIGPE-ATPASL  202 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~---------------slrF~FDG~rI~~~-~TP~sL  202 (217)
                      +++.-|+|+|...+|. ..+.|.++.+...|...-+++.|++++               .++++|.|+.|..+ .|-.++
T Consensus         3 sgss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~   82 (105)
T d1v2ya_           3 SGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY   82 (105)
T ss_dssp             CCCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred             CCCCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHc
Confidence            4677899999988886 689999999999999999998888754               47799999999765 599999


Q ss_pred             CCCCCcEEEEEec
Q 027888          203 EMEDNDIIEVHTK  215 (217)
Q Consensus       203 gMEDGDiIDV~~k  215 (217)
                      |+.+|++|.+..+
T Consensus        83 gI~~g~~l~lv~r   95 (105)
T d1v2ya_          83 GIRNRDEVSFIKK   95 (105)
T ss_dssp             TCCSSEEEEEEEC
T ss_pred             CCCCCCEEEEEEe
Confidence            9999999987654

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00018  Score=53.58  Aligned_cols=64  Identities=6%  Similarity=0.007  Sum_probs=59.2

Q ss_pred             EEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCc
Q 027888          145 IVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDND  208 (217)
Q Consensus       145 ItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGD  208 (217)
                      |.|++......+.+.|.++++...|....+++.|++++..|++|.|+.|..+.|-.+.|+.++.
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTT
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCccc
Confidence            6788887666788999999999999999999999999999999999999999999999998765

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00069  Score=49.07  Aligned_cols=76  Identities=13%  Similarity=-0.004  Sum_probs=65.5

Q ss_pred             CCCCcEEEEEEeCCce--EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc-------ccCCCCCccccCCCCCcEE
Q 027888          140 IERAKIVVSIQDKGGL--KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD-------KIGPEATPASLEMEDNDII  210 (217)
Q Consensus       140 ~~~~kItIkV~~qdg~--v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~-------rI~~~~TP~sLgMEDGDiI  210 (217)
                      +++.-|+|.|.+....  ...|+.++.+...|........|+++...|+.|.|.       ....+.|-.+++++||.+|
T Consensus         3 sgss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~i   82 (95)
T d1v6ea_           3 SGSSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI   82 (95)
T ss_dssp             SCCCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred             CCCCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEE
Confidence            4667788888875332  689999999999999999999999999999999876       4667888899999999999


Q ss_pred             EEEec
Q 027888          211 EVHTK  215 (217)
Q Consensus       211 DV~~k  215 (217)
                      .|..+
T Consensus        83 hlvd~   87 (95)
T d1v6ea_          83 HVIDH   87 (95)
T ss_dssp             EEBCC
T ss_pred             EEEeC
Confidence            98754

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00084  Score=48.35  Aligned_cols=75  Identities=7%  Similarity=0.017  Sum_probs=61.2

Q ss_pred             CCCcEEEEEEeCCc---eEEEEEcCCChHHHHHHHHHhhcC--CCCcceEEEECCcccCCCCCccccCC--CCCcEEEEE
Q 027888          141 ERAKIVVSIQDKGG---LKQFRVYADDKFERLFKMYADKVN--LDQENLVFCFDGDKIGPEATPASLEM--EDNDIIEVH  213 (217)
Q Consensus       141 ~~~kItIkV~~qdg---~v~FrIk~tT~L~KLf~aYae~~g--l~~~slrF~FDG~rI~~~~TP~sLgM--EDGDiIDV~  213 (217)
                      ++..|+|.|...++   .+.+.+.++++...|.+.-+++.|  +++...|++|.|+.|..+.|-.++..  +++.+|...
T Consensus         4 gs~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV   83 (93)
T d1wgda_           4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred             CCCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEE
Confidence            55667777777554   378899999999999999999976  78899999999999999999999864  445577665


Q ss_pred             ec
Q 027888          214 TK  215 (217)
Q Consensus       214 ~k  215 (217)
                      .+
T Consensus        84 ~~   85 (93)
T d1wgda_          84 CN   85 (93)
T ss_dssp             CC
T ss_pred             ec
Confidence            44

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.0025  Score=45.36  Aligned_cols=73  Identities=11%  Similarity=-0.018  Sum_probs=61.4

Q ss_pred             CcEEEEEEeCCc--eEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCc-------ccCCCCCccccCCCCCcEEEEE
Q 027888          143 AKIVVSIQDKGG--LKQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGD-------KIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       143 ~kItIkV~~qdg--~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~-------rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      +.|.|.|.+...  .+..|+.++.+...|...-....|+++...+++|-|.       ....+.|-.++|++||.+|.|.
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            456778876443  2688999999999999999999999999999999776       3456788899999999999986


Q ss_pred             ec
Q 027888          214 TK  215 (217)
Q Consensus       214 ~k  215 (217)
                      -.
T Consensus        83 d~   84 (90)
T d1t0ya_          83 DV   84 (90)
T ss_dssp             EC
T ss_pred             eC
Confidence            43

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.0015  Score=47.83  Aligned_cols=53  Identities=19%  Similarity=0.216  Sum_probs=47.0

Q ss_pred             CChHHHHHHHHHhhcCC---CCcceEEEECCcccCCCCCccccCCCCCcEEEEEec
Q 027888          163 DDKFERLFKMYADKVNL---DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHTK  215 (217)
Q Consensus       163 tT~L~KLf~aYae~~gl---~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~k  215 (217)
                      +.+...|.+..+++.+.   ++..+|++|.|+.|..+.|-.+.|+++|.+|.+..+
T Consensus        37 ~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          37 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             ccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            56799999999988753   358999999999999999999999999999998765

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.007  Score=42.86  Aligned_cols=68  Identities=10%  Similarity=0.144  Sum_probs=62.6

Q ss_pred             EEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECCcccCCCCCccccCCCCCcEEEEEe
Q 027888          147 VSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDGDKIGPEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       147 IkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~~  214 (217)
                      |.|.+.+|. ..+++.+.+.|..+.+.-|+++|++.+.+.+.|.+..|..+..---.||-+|-..|...
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            677888886 79999999999999999999999999999999999999999999999999998888654

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.86  E-value=0.072  Score=37.36  Aligned_cols=80  Identities=10%  Similarity=0.132  Sum_probs=58.9

Q ss_pred             CCCCcCCCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEECC--cccC--CCCCccccCCCCCcE
Q 027888          135 VSKPAIERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCFDG--DKIG--PEATPASLEMEDNDI  209 (217)
Q Consensus       135 ~~~p~~~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~FDG--~rI~--~~~TP~sLgMEDGDi  209 (217)
                      ++++.+....++|.|+-.+|. +.-+...+++++.|++ |....+.....++++...  ..+.  .+.|-.++|+-...+
T Consensus         7 ~EP~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~-fv~~~~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~   85 (96)
T d2cr5a1           7 EEPSETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLD-WMMKVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTV   85 (96)
T ss_dssp             CCCCSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHH-HHHHHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEE
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHH-HHHHhccCcccceeecCCCceecCccCCCcHHHCCCCCCCE
Confidence            344454667899999999996 6778889999999996 455566666777776643  3442  367899999999888


Q ss_pred             EEEEec
Q 027888          210 IEVHTK  215 (217)
Q Consensus       210 IDV~~k  215 (217)
                      +-|.-+
T Consensus        86 L~v~~~   91 (96)
T d2cr5a1          86 LNVEEK   91 (96)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            876543

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.38  E-value=0.31  Score=33.89  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=44.7

Q ss_pred             CcCCCCcEEEEEEeCCceEEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE---CCccc
Q 027888          138 PAIERAKIVVSIQDKGGLKQFRVYADDKFERLFKMYADKVNLDQENLVFCF---DGDKI  193 (217)
Q Consensus       138 p~~~~~kItIkV~~qdg~v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F---DG~rI  193 (217)
                      +.++...|+||+...+..+.|+|.++..|..|...-++++++  +.+++.|   +|..+
T Consensus         6 ~~~~~~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~~--~~~~lkY~Dedgd~v   62 (85)
T d1ip9a_           6 STSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTKLFDGSGE   62 (85)
T ss_dssp             CCCCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEECCSSSCCS
T ss_pred             CCCCCCCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhCC--CceEEEEEcCCCCEE
Confidence            345778899999988777899999999999999999999975  5688888   45444

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=1.6  Score=29.36  Aligned_cols=74  Identities=12%  Similarity=0.192  Sum_probs=56.8

Q ss_pred             CCCcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhcCCCCcceEEEE--CCcccC---CCCCccccCCCCCcEEEEEe
Q 027888          141 ERAKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKVNLDQENLVFCF--DGDKIG---PEATPASLEMEDNDIIEVHT  214 (217)
Q Consensus       141 ~~~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~gl~~~slrF~F--DG~rI~---~~~TP~sLgMEDGDiIDV~~  214 (217)
                      +...++|.|+-.+|. ++-+...+++++.|++.-.. .+.+...+.|+-  -.+.+.   .+.|-.++|+-....|-|-.
T Consensus         2 ~e~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~   80 (82)
T d1h8ca_           2 AEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   80 (82)
T ss_dssp             CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEe
Confidence            345678999999996 78899999999999987654 577777777765  344553   45689999999888877654


Q ss_pred             c
Q 027888          215 K  215 (217)
Q Consensus       215 k  215 (217)
                      +
T Consensus        81 ~   81 (82)
T d1h8ca_          81 K   81 (82)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.65  E-value=1.4  Score=30.25  Aligned_cols=66  Identities=8%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             CcEEEEEEeCCce-EEEEEcCCChHHHHHHHHHhhc-CCCCcceEEEEC-Cc-cc-CCCCCccccCCCCCc
Q 027888          143 AKIVVSIQDKGGL-KQFRVYADDKFERLFKMYADKV-NLDQENLVFCFD-GD-KI-GPEATPASLEMEDND  208 (217)
Q Consensus       143 ~kItIkV~~qdg~-v~FrIk~tT~L~KLf~aYae~~-gl~~~slrF~FD-G~-rI-~~~~TP~sLgMEDGD  208 (217)
                      +..+|.|+-.+|. +..+...+.+++.|++...... +.....+.|.-. .. .| ..+.|-.++||-++-
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV   83 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSE
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCce
Confidence            4578889999997 7899999999999998776654 667778888876 23 34 458899999999764

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.22  E-value=0.61  Score=33.54  Aligned_cols=57  Identities=11%  Similarity=0.240  Sum_probs=44.0

Q ss_pred             EEEEcCCChHHHHHHHHHhh--cCCCCcceEEEECCcccCC----------------CCCccccCCCCCcEEEEE
Q 027888          157 QFRVYADDKFERLFKMYADK--VNLDQENLVFCFDGDKIGP----------------EATPASLEMEDNDIIEVH  213 (217)
Q Consensus       157 ~FrIk~tT~L~KLf~aYae~--~gl~~~slrF~FDG~rI~~----------------~~TP~sLgMEDGDiIDV~  213 (217)
                      .+.|.++.+|+.|++..|++  +.+.--+++...+|..-.-                ..|-.+||+.||++|-|-
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~Vt   78 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA   78 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEe
Confidence            46788999999999999997  4555567887778764322                345579999999999874

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.76  E-value=2.6  Score=28.07  Aligned_cols=54  Identities=9%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             eEEEEEcCCChHHHHHHHHHhhcCC-----------CCcceEEEECCcccCCCCCccccCCCCCcEEEEE
Q 027888          155 LKQFRVYADDKFERLFKMYADKVNL-----------DQENLVFCFDGDKIGPEATPASLEMEDNDIIEVH  213 (217)
Q Consensus       155 ~v~FrIk~tT~L~KLf~aYae~~gl-----------~~~slrF~FDG~rI~~~~TP~sLgMEDGDiIDV~  213 (217)
                      ...+.+...++++.|++.-+++++-           ....+++..||+.+.. +|+    |.+||.|-++
T Consensus        20 ~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-d~~----L~~gDevai~   84 (88)
T d1vjka_          20 EEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-DEE----LKDGDVVGVF   84 (88)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-TCB----CCTTCEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-CcC----cCCCCEEEEe
Confidence            3678888899999999998887642           2367899999999854 454    8999999876

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.35  E-value=1.9  Score=31.02  Aligned_cols=69  Identities=12%  Similarity=0.259  Sum_probs=51.5

Q ss_pred             EEEEEeCCceEEEEE-cCCChHHHHHHHHHhhcCCCCcceEEEEC-------------C-cccCC-CCCccccCCCCCcE
Q 027888          146 VVSIQDKGGLKQFRV-YADDKFERLFKMYADKVNLDQENLVFCFD-------------G-DKIGP-EATPASLEMEDNDI  209 (217)
Q Consensus       146 tIkV~~qdg~v~FrI-k~tT~L~KLf~aYae~~gl~~~slrF~FD-------------G-~rI~~-~~TP~sLgMEDGDi  209 (217)
                      -|+|++.+|.-.+.| +..-++..|...-++..+++...=++..|             + ..+.. ..+-.+|||.+|-+
T Consensus         2 iiRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           2 MLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             eEEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            378999999777888 45779999999999999999866555433             1 11233 34568999999999


Q ss_pred             EEEEe
Q 027888          210 IEVHT  214 (217)
Q Consensus       210 IDV~~  214 (217)
                      |....
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87643