Citrus Sinensis ID: 027896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIRTEMDDEERIALQMIEELLNRNCPSPSYEVQEKADDHQ
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEcHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mvqsnkkfrgvrqrhwgswvsEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSgrnaktnfpvtqssngdpaqpsessssssptnELSQLLHAKLRkcsktpspsmtclrldtenshiGVWQkragqrsdsnwVMTVHLgnrnsgdhtnvnnnaddvsgnalplaadsqsqgpelmiRTEMDDEERIALQMIEELLnrncpspsyevqekaddhq
Flexible Loop (DISEMBL)
mvqsnkkfrgvrqrhwgswvseirhpllkRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSSNGDPAQpsessssssptNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHIGVWQkragqrsdsnWVMTVHLGnrnsgdhtnVNNNADDVSGNALPLaadsqsqgpELMIRTEMDDEERIALQMIEELLnrncpspsyevqekaddhq
Low Complexity Region (SEG)
MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETaeeaaraydqaaILMSGRNAKTNFPVTQSSNGDPAQPsessssssPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIRTEMDDEERIALQMIEELLNRNCPSPSYEVQEKADDHQ
Disordered region (IsUnstruct)
*********GVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILM*******************************************************CLRLDTENSHIGVWQK********NWVMTVHL****************************************************************************
Disordered Region (DISOPRED)
******K***VRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP****************************************************************************************************************************IALQMIEELLNRNCPS*************
Disordered Region (DISEMBL)
**************HWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPV*************************QLLHAKLRKCSKTPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIRTEMDDEERIALQMIEELLNRNCPS*************
Disordered Region (DISPRO)
****NKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSK*****MTCLR*****SHIGVWQKRAGQRSDSNWVMTVHLGNRNSG***********************************MDDEERIALQMIEELLNRNCPSP************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIRTEMDDEERIALQMIEELLNRNCPSPSYEVQEKADDHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9XI33	199	Ethylene-responsive trans	yes	no	0.889	0.969	0.599	5e-59
Q3E958	189	Ethylene-responsive trans	no	no	0.829	0.952	0.539	1e-51
Q9LFN7	189	Ethylene-responsive trans	no	no	0.861	0.989	0.572	3e-47
Q94AW5	181	Ethylene-responsive trans	no	no	0.410	0.491	0.61	3e-26
P16146	164	Protein PPLZ02 OS=Lupinus	N/A	no	0.294	0.390	0.671	4e-21
Q9FK12	354	Ethylene-responsive trans	no	no	0.276	0.169	0.666	5e-18
Q9SUE3	335	Ethylene-responsive trans	no	no	0.290	0.188	0.634	7e-18
Q9SKW5	314	Ethylene-responsive trans	no	no	0.304	0.210	0.590	1e-17
Q9SIE4	261	Ethylene-responsive trans	no	no	0.262	0.218	0.684	1e-17
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.276	0.154	0.65	1e-17

>sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1

 Score =  227 bits (579), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 124/207 (59%), Positives = 155/207 (74%), Gaps = 14/207 (6%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQ+ KKFRGVRQRHWGSWV+EIRHPLLKRR+WLGTFETAEEAARAYD+AA+LMSGRNAK
Sbjct: 1   MVQT-KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQ------PSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLD 114
           TNFP+  ++ G+ ++       S + SSS+ ++ LS +L AKLRKC K+PSPS+TCLRLD
Sbjct: 60  TNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLD 119

Query: 115 TENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQG 174
           T +SHIGVWQKRAG +SDS+WVMTV LG  +S   T    + D +    L    + +  G
Sbjct: 120 TASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAI----LAPTTEVEIGG 175

Query: 175 PELMIRTEMDDEERIALQMIEELLNRN 201
               +   +D+EE++ALQMIEELLN N
Sbjct: 176 SREEV---LDEEEKVALQMIEELLNTN 199

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Confers drought resistance. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q3E958|SHN3_ARATH Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1

 Score =  202 bits (515), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 142/204 (69%), Gaps = 24/204 (11%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MV S KKFRGVRQR WGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LM+G++AK
Sbjct: 1   MVHS-KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFPV +S+  +     E +S+      LS+LL+AKLRK  K  +P +TCLRLD ++SHI
Sbjct: 60  TNFPVIKSNGSNSL---EINSALRSPKSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHI 116

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIR 180
           GVWQKRAG ++  NWV  V LG++                 NA P   D ++   ++ +R
Sbjct: 117 GVWQKRAGSKTSPNWVKLVELGDKV----------------NARP-GGDIETN--KMKVR 157

Query: 181 TE-MDDEERIALQMIEELLNRNCP 203
            E + +++++A+QMIEELLN  CP
Sbjct: 158 NEDVQEDDQMAMQMIEELLNWTCP 181

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFN7|SHN2_ARATH Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1

 Score =  188 bits (477), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 139/199 (69%), Gaps = 12/199 (6%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MV S +KFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAK
Sbjct: 1   MVHS-RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFPV +S  G       +S   SP + LS+LL+AKLRK  K  +PS+TCLRLDT++SHI
Sbjct: 60  TNFPVVKSEEGSDHVKDVNSPLMSPKS-LSELLNAKLRKSCKDLTPSLTCLRLDTDSSHI 118

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIR 180
           GVWQKRAG ++   WVM + LGN        VN +A D+    L        +  E    
Sbjct: 119 GVWQKRAGSKTSPTWVMRLELGNV-------VNESAVDL---GLTTMNKQNVEKEEEEEE 168

Query: 181 TEMDDEERIALQMIEELLN 199
             + DE+++A++MIEELLN
Sbjct: 169 AIISDEDQLAMEMIEELLN 187

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AW5|ERF03_ARATH Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 70/100 (70%), Gaps = 11/100 (11%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           M +  ++FRGVRQRHWGSWVSEIRHPLLK R+WLGTFETAE+AARAYD+AA LM G  A+
Sbjct: 1   MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKC 100
           TNFP           P+   +SSS    LS  L AKL KC
Sbjct: 61  TNFPY---------NPNAIPTSSSKL--LSATLTAKLHKC 89

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P16146|PZ02_LUPPO Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1

 Score =  101 bits (252), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/64 (67%), Positives = 53/64 (82%)

Query: 1  MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
          M +  +++RG RQRHWGSWVSEIRH +LK R+W GTFE+AE+AARAYD+AA LM G  A+
Sbjct: 1  MARPQQRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRAR 60

Query: 61 TNFP 64
          TNFP
Sbjct: 61 TNFP 64

Essential for all lupin cells independent of the respective tissue.

Lupinus polyphyllus (taxid: 3874)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 46/60 (76%)

Query: 6   KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPV 65
           KKFRGVRQR WG W +EIR P  +RR+WLGTFETAEEAA  YD AAI + G +A TNF +
Sbjct: 123 KKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 47/63 (74%)

Query: 3   QSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTN 62
           Q+ KK+RGVRQR WG W +EIR P  +RR+WLGTF TAEEAA  YD AAI + G +A TN
Sbjct: 113 QNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTN 172

Query: 63  FPV 65
           F V
Sbjct: 173 FTV 175

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKW5|ERF55_ARATH Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 49/66 (74%)

Query: 6   KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPV 65
           K +RGVRQRHWG WV+EIR P  + R+WLGTF+TAEEAA AYD+AA  + G +A+ NFP 
Sbjct: 141 KLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPA 200

Query: 66  TQSSNG 71
            +   G
Sbjct: 201 LRYQTG 206

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 45/57 (78%)

Query: 8   FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
           +RGVRQRHWG WV+EIR P  + R+WLGTFETAE+AA AYDQAA  + G  AK NFP
Sbjct: 71  YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 45/60 (75%)

Query: 5   NKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
            K +RGVRQRHWG WV+EIR P  + RVWLGTFETAE+AA AYD AA ++ G  A  NFP
Sbjct: 229 TKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255567035	229	DNA binding protein, putative [Ricinus c	0.912	0.864	0.696	5e-81
224142619	206	AP2/ERF domain-containing transcription	0.907	0.956	0.715	5e-78
356546164	213	PREDICTED: ethylene-responsive transcrip	0.926	0.943	0.690	4e-77
356565177	214	PREDICTED: ethylene-responsive transcrip	0.926	0.939	0.688	4e-76
224087134	208	AP2/ERF domain-containing transcription	0.926	0.966	0.701	6e-75
357478103	214	Ethylene-responsive transcription factor	0.949	0.962	0.671	2e-74
356514467	201	PREDICTED: ethylene-responsive transcrip	0.870	0.940	0.660	4e-70
356510515	218	PREDICTED: ethylene-responsive transcrip	0.940	0.935	0.672	6e-70
449520708	246	PREDICTED: ethylene-responsive transcrip	0.967	0.853	0.625	4e-69
449443295	218	PREDICTED: ethylene-responsive transcrip	0.912	0.908	0.652	8e-69

>gi|255567035|ref|XP_002524500.1| DNA binding protein, putative [Ricinus communis] gi|223536288|gb|EEF37940.1| DNA binding protein, putative [Ricinus communis]

 Score =  306 bits (783), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 154/221 (69%), Positives = 174/221 (78%), Gaps = 23/221 (10%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQS KKFRGVRQRHWGSWVSEIRHPLLKRR+WLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQS-KKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDP-----------AQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMT 109
           TNFP+TQ+ NGDP              S+++++++  N LS++LHAKLRKCSKTPSPSMT
Sbjct: 60  TNFPITQTPNGDPKSSTADSSTTATSSSKNTATTTAPNGLSEILHAKLRKCSKTPSPSMT 119

Query: 110 CLRLDTENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAAD 169
           CLRLDTENSHIGVWQKRAGQRSDSNWVMTV LG +N            +VS    P+A  
Sbjct: 120 CLRLDTENSHIGVWQKRAGQRSDSNWVMTVQLGKQN-----------HEVSEGTFPMAES 168

Query: 170 SQSQGPELMIRTEMDDEERIALQMIEELLNRNCPSPSYEVQ 210
           S +      +RT+MD+EERIALQMIEELLNRNCPSP +EVQ
Sbjct: 169 SNTLPGPPELRTQMDEEERIALQMIEELLNRNCPSPPFEVQ 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142619|ref|XP_002324652.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222866086|gb|EEF03217.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 156/218 (71%), Positives = 171/218 (78%), Gaps = 21/218 (9%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQS KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQS-KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFP+ Q+SN +  + S+ +S  +P N LS++LHAKLRKCSK PSPSMTCLRLDTENS I
Sbjct: 60  TNFPIPQTSNEEDPKSSDEASLPTPPNGLSEILHAKLRKCSKAPSPSMTCLRLDTENSLI 119

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQG----PE 176
           GVWQKRAG+RSDSNWVM V LG R S            VS + LPL    QS G    PE
Sbjct: 120 GVWQKRAGERSDSNWVMRVQLGQRES-----------QVSESTLPLP---QSSGGVSEPE 165

Query: 177 LMIRTEMDDEERIALQMIEELLNRNCPSPSYEVQEKAD 214
           L  R EM ++ERIALQMIEELLNRNCPSPS+ VQ+  D
Sbjct: 166 L--RAEMGEDERIALQMIEELLNRNCPSPSFGVQDHGD 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546164|ref|XP_003541501.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 174/223 (78%), Gaps = 22/223 (9%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQS KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQS-KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFP+TQ+  GDP   +   + S+ + +L ++LHAKLRKCSK PSPSMTCLRLDTENSHI
Sbjct: 60  TNFPITQTPEGDPKSTNSEDTPSTTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHI 119

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQS--QGPELM 178
           GVWQKRAG+RSDSNWVMTV LG +       VNNN            ADS S     + +
Sbjct: 120 GVWQKRAGRRSDSNWVMTVQLGKK------TVNNNETH--------QADSSSNLHHHQEV 165

Query: 179 IRTEMDDEERIALQMIEELLN-RNCPSPSYE--VQEK--ADDH 216
           +R E+D+EERIALQMIEELLN RNCPSPS++  +QE+  AD H
Sbjct: 166 VRGEIDEEERIALQMIEELLNDRNCPSPSFDNNIQERDGADHH 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565177|ref|XP_003550820.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 148/215 (68%), Positives = 170/215 (79%), Gaps = 14/215 (6%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQS KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQS-KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFP+TQ+  GDP   +   + S+ + +L ++LHAKLRKC K PSPSMTCLRLD ENSHI
Sbjct: 60  TNFPITQTPEGDPKSTTSEDTPSTTSKDLEEILHAKLRKCGKVPSPSMTCLRLDPENSHI 119

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIR 180
           GVWQKRAG+RSDSNWVMTV LG ++     NVNNN      +    A  S +   + ++R
Sbjct: 120 GVWQKRAGRRSDSNWVMTVQLGKKS----VNVNNN------DTHHQADSSSNLHHQEVVR 169

Query: 181 TEMDDEERIALQMIEELLN-RNCPSPSY--EVQEK 212
            E+D+EERIALQMIEELLN RNCPSPS+   +QE+
Sbjct: 170 GEIDEEERIALQMIEELLNDRNCPSPSFNNNIQER 204

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087134|ref|XP_002308080.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222854056|gb|EEE91603.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 166/218 (76%), Gaps = 17/218 (7%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MV S KKFRGVRQR WGSWVSEIRHPL+KRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVPS-KKFRGVRQRRWGSWVSEIRHPLVKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSN-GDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSH 119
           TNFP+ Q+SN  DP       S ++P N LSQ+LHAKLRKCSK PSPSMTCLRLD ENS 
Sbjct: 60  TNFPMPQTSNEDDPKSSDHQPSLTTPPNGLSQILHAKLRKCSKAPSPSMTCLRLDAENS- 118

Query: 120 IGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQS--QGPEL 177
           IGVWQ+RAGQRSDSNWVMTV LG R+             VS +ALPL   S     GPE 
Sbjct: 119 IGVWQQRAGQRSDSNWVMTVQLGKRDES----------QVSESALPLPDQSPGGISGPEW 168

Query: 178 MIRTEMDDEERIALQMIEELLNRNCPSPSYEVQEKADD 215
             R EMD EER+ALQM+EELLNRNCPSP + VQ+  DD
Sbjct: 169 --REEMDKEERVALQMVEELLNRNCPSPPFGVQDHDDD 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478103|ref|XP_003609337.1| Ethylene-responsive transcription factor WIN1 [Medicago truncatula] gi|355510392|gb|AES91534.1| Ethylene-responsive transcription factor WIN1 [Medicago truncatula]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/216 (67%), Positives = 168/216 (77%), Gaps = 10/216 (4%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQS KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQS-KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQPSESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
           TNFP+TQ+S GDP   + + +  S + +L ++LHAKLRKCSK PSPSMTCLRLDTENSHI
Sbjct: 60  TNFPITQTSEGDPKSITSNENKPSTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSHI 119

Query: 121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIR 180
           GVWQKRAG+ S+SNWVMTV LG + S           D   ++  +A  S     E ++R
Sbjct: 120 GVWQKRAGKCSESNWVMTVQLGKKMSV--------TQDSGSSSSSVAPSSAVATEEEIVR 171

Query: 181 TEMDDEERIALQMIEELLN-RNCPSPSYEVQEKADD 215
            E+D+E+RIALQMIEELLN +NCPSPS    ++ DD
Sbjct: 172 GEIDEEDRIALQMIEELLNDKNCPSPSINNIKQGDD 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514467|ref|XP_003525927.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 142/215 (66%), Positives = 158/215 (73%), Gaps = 26/215 (12%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQ+ +KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQT-RKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPA---QPSE---SSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLD 114
           TNFP+ Q+  GDP     P++    SSS + + EL ++LHAKLRKC K PSPSMTCLRLD
Sbjct: 60  TNFPIVQTPEGDPKTTLTPTDHETPSSSMTTSKELEEILHAKLRKCGKLPSPSMTCLRLD 119

Query: 115 TENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQG 174
            ENSHIGVWQKRAGQ SDSNWVM V    +  G   N     D V               
Sbjct: 120 PENSHIGVWQKRAGQHSDSNWVMMVPPLGKKGG--ANEGGTGDVVR-------------- 163

Query: 175 PELMIRTEMDDEERIALQMIEELLNRNCP--SPSY 207
            + ++RTEMD+EERIALQMIEELL RNCP  SPS+
Sbjct: 164 -QELLRTEMDEEERIALQMIEELLGRNCPITSPSF 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510515|ref|XP_003523983.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 166/217 (76%), Gaps = 13/217 (5%)

Query: 1   MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 60
           MVQ+ +KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK
Sbjct: 1   MVQT-RKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK 59

Query: 61  TNFPVTQSSNGDPAQP------SESSSSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLD 114
           TNFP+ Q+  GDP           SSSS++ + EL ++LHAKLRKC K PSPSMTCLRLD
Sbjct: 60  TNFPILQTPEGDPKTTLTPIDHETSSSSTTTSKELEEILHAKLRKCGKLPSPSMTCLRLD 119

Query: 115 TENSHIGVWQKRAGQRSDSNWVMTV-HLGNRNSGDHTNVNNNADDVSGNALPLA-ADSQS 172
            ENSHIGVWQKRAGQRSDSNWVM V  LG +   +      +A     N+ P +  D   
Sbjct: 120 PENSHIGVWQKRAGQRSDSNWVMMVPPLGKKGGANEGGTGGDAS--CSNSFPFSECDPTP 177

Query: 173 Q-GPELMIRTEMDDEERIALQMIEELLNRNCP-SPSY 207
           Q   + ++RTEMD+EERIALQMIEELL+RNCP SPS+
Sbjct: 178 QVARQELLRTEMDEEERIALQMIEELLSRNCPTSPSF 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520708|ref|XP_004167375.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Cucumis sativus]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/235 (62%), Positives = 170/235 (72%), Gaps = 25/235 (10%)

Query: 5   NKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
           +KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAA+LMSGRNAKTNFP
Sbjct: 4   SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFP 63

Query: 65  VTQSSNGDPAQPSESS-----SSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSH 119
           ++Q++  +  +P ++      S SSP   LS++LHAKLRKCSK PSPSMTCLRLDTENSH
Sbjct: 64  MSQTAVSEFGKPDDNMINNIISPSSPKG-LSEILHAKLRKCSKVPSPSMTCLRLDTENSH 122

Query: 120 IGVWQKRAGQRSDSNWVMTVHLGNRN----------------SGDHTNVNNNADDVSGNA 163
           IGVWQKRAGQRSDS+WVMTVHLG  N                 GD   V  N      + 
Sbjct: 123 IGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTTAGGGLEDGDGGRVKRNKKSRVFSG 182

Query: 164 LPLAADSQSQGPELMIRTEMDD-EERIALQMIEELLNRNCPSPSYEVQEKADDHQ 217
           L +++  +  G   M + EMDD EERIALQMIEELL+RN  +PS E+ +  D HQ
Sbjct: 183 L-MSSSPEGGGSCQMRKLEMDDEEERIALQMIEELLSRNYGNPS-EIIQLQDHHQ 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443295|ref|XP_004139415.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Cucumis sativus]

 Score =  265 bits (678), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 143/219 (65%), Positives = 163/219 (74%), Gaps = 21/219 (9%)

Query: 5   NKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
           +KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAA+LMSGRNAKTNFP
Sbjct: 4   SKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFP 63

Query: 65  VTQSSNGDPAQPSESS-----SSSSPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSH 119
           ++Q++  +  +P ++      S SSP   LS++LHAKLRKCSK PSPSMTCLRLDTENSH
Sbjct: 64  MSQTAVSEFGKPDDNMINNIISPSSPKG-LSEILHAKLRKCSKVPSPSMTCLRLDTENSH 122

Query: 120 IGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMI 179
           IGVWQKRAGQRSDS+WVMTVHLG  NS   ++    A     +                 
Sbjct: 123 IGVWQKRAGQRSDSSWVMTVHLGKTNSSSSSSSTTTAGGGLEDG-------------DGG 169

Query: 180 RTEMDD-EERIALQMIEELLNRNCPSPSYEVQEKADDHQ 217
           R EMDD EERIALQMIEELL+RN  +PS E+ +  D HQ
Sbjct: 170 RLEMDDEEERIALQMIEELLSRNYGNPS-EIIQLQDHHQ 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2037698	199	SHN1 "SHINE 1" [Arabidopsis th	0.889	0.969	0.526	1.2e-51
TAIR|locus:2148022	189	SHN2 "shine2" [Arabidopsis tha	0.861	0.989	0.507	2.4e-44
TAIR|locus:2145477	189	SHN3 "shine3" [Arabidopsis tha	0.695	0.798	0.532	1.3e-38
TAIR|locus:2146985	181	ESE3 "ethylene and salt induci	0.718	0.861	0.386	8.4e-21
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.327	0.200	0.450	1.6e-12
TAIR|locus:2058641	176	DEAR3 "DREB and EAR motif prot	0.271	0.335	0.372	2.2e-12
TAIR|locus:2201103	230	DREB26 "dehydration response e	0.299	0.282	0.446	3.9e-12
TAIR|locus:2825329	183	AT1G71450 [Arabidopsis thalian	0.308	0.366	0.477	3.9e-12
TAIR|locus:2058764	194	ERF38 "ERF family protein 38"	0.502	0.561	0.327	3.9e-12
TAIR|locus:2085527	330	DREB2B "DRE/CRT-binding protei	0.304	0.2	0.454	4.4e-12

TAIR|locus:2037698 SHN1 "SHINE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 109/207 (52%), Positives = 137/207 (66%)

Query:     1 MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAK 60
             MVQ+ KKFRGVRQRHWGSWV+EIRHPLLKRR+WLGTFET            +LMSGRNAK
Sbjct:     1 MVQT-KKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAK 59

Query:    61 TNFPVTQSSNGDPAQ------PXXXXXXXXPTNELSQLLHAKLRKCSKTPSPSMTCLRLD 114
             TNFP+  ++ G+ ++                ++ LS +L AKLRKC K+PSPS+TCLRLD
Sbjct:    60 TNFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLD 119

Query:   115 TENSHIGVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQG 174
             T +SHIGVWQKRAG +SDS+WVMTV LG  +S   T    + D +    L    + +  G
Sbjct:   120 TASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTSKASQDAI----LAPTTEVEIGG 175

Query:   175 PELMIRTEMDDEERIALQMIEELLNRN 201
                 +   +D+EE++ALQMIEELLN N
Sbjct:   176 SREEV---LDEEEKVALQMIEELLNTN 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010166 "wax metabolic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2148022 SHN2 "shine2" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 101/199 (50%), Positives = 127/199 (63%)

Query:     1 MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAK 60
             MV S +KFRGVRQR WGSWVSEIRHPLLKRRVWLGTFET            +LM+G+NAK
Sbjct:     1 MVHS-RKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAK 59

Query:    61 TNFPVTQSSNGDPAQPXXXXXXXXPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
             TNFPV +S  G             P + LS+LL+AKLRK  K  +PS+TCLRLDT++SHI
Sbjct:    60 TNFPVVKSEEGSDHVKDVNSPLMSPKS-LSELLNAKLRKSCKDLTPSLTCLRLDTDSSHI 118

Query:   121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNVNNNADDVSGNALPLAADSQSQGPELMIR 180
             GVWQKRAG ++   WVM + LGN        VN +A D+    +      + +  E  I 
Sbjct:   119 GVWQKRAGSKTSPTWVMRLELGNV-------VNESAVDLGLTTMNKQNVEKEEEEEEAI- 170

Query:   181 TEMDDEERIALQMIEELLN 199
               + DE+++A++MIEELLN
Sbjct:   171 --ISDEDQLAMEMIEELLN 187

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145477 SHN3 "shine3" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 83/156 (53%), Positives = 106/156 (67%)

Query:     1 MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAK 60
             MV S KKFRGVRQR WGSWVSEIRHPLLKRRVWLGTF+T            +LM+G++AK
Sbjct:     1 MVHS-KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAK 59

Query:    61 TNFPVTQSSNGDPAQPXXXXXXXXPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
             TNFPV +S+  +  +         P + LS+LL+AKLRK  K  +P +TCLRLD ++SHI
Sbjct:    60 TNFPVIKSNGSNSLE--INSALRSPKS-LSELLNAKLRKNCKDQTPYLTCLRLDNDSSHI 116

Query:   121 GVWQKRAGQRSDSNWVMTVHLGNR-NSGDHTNVNNN 155
             GVWQKRAG ++  NWV  V LG++ N+    ++  N
Sbjct:   117 GVWQKRAGSKTSPNWVKLVELGDKVNARPGGDIETN 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2146985 ESE3 "ethylene and salt inducible 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
 Identities = 68/176 (38%), Positives = 82/176 (46%)

Query:     1 MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAK 60
             M +  ++FRGVRQRHWGSWVSEIRHPLLK R+WLGTFET             LM G  A+
Sbjct:     1 MARPQQRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRAR 60

Query:    61 TNFPVTQSSNGDPAQPXXXXXXXXPTNELSQLLHAKLRKCSKTPSPSMTCLRLDTENSHI 120
             TNFP   + N  P               LS  L AKL KC    S  MT  +  T+    
Sbjct:    61 TNFPY--NPNAIPTSSSKL---------LSATLTAKLHKCYMA-SLQMT-KQTQTQTQTQ 107

Query:   121 GVWQKRAGQRSDSNWVMTVHLGNRNSGDHTNV---NNNADDVSGNALPLAADSQSQ 173
                 + A   SD       HL NR   + T +   + NA+ +  N  PL  D   Q
Sbjct:   108 TARSQSAD--SDGVTANESHL-NRGVTETTEIKWEDGNAN-MQQNFRPLEEDHIEQ 159

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 32/71 (45%), Positives = 40/71 (56%)

Query:     6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFPV 65
             KKFRGVRQR WG W +EIR P  +RR+WLGTFET            I + G +A TNF +
Sbjct:   123 KKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182

Query:    66 TQSSNGDPAQP 76
                   +  +P
Sbjct:   183 PPQEEEEEEEP 193

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2058641 DEAR3 "DREB and EAR motif protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query:     6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFP 64
             K ++G+R R WG WV+EIR P  + R+WLG++ T              + G +A+ NFP
Sbjct:    26 KPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFP 84

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2201103 DREB26 "dehydration response element-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 29/65 (44%), Positives = 38/65 (58%)

Query:     6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFPV 65
             KK++GVR R WGSWVSEIR P  K R+WLG++ T            + + G  A  NFP 
Sbjct:    48 KKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPT 107

Query:    66 TQSSN 70
             + SS+
Sbjct:   108 SSSSH 112

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2825329 AT1G71450 [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 32/67 (47%), Positives = 37/67 (55%)

Query:     8 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFPVTQ 67
             +RGVR+R WG WVSEIR P  K R+WLG+FET                GR A+ NFP   
Sbjct:    24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query:    68 SSNGDPA 74
             SS   PA
Sbjct:    84 SSLPRPA 90

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058764 ERF38 "ERF family protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 36/110 (32%), Positives = 49/110 (44%)

Query:     1 MVQSNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAK 60
             +V  +  FRGVR R WG WVSEIR P  K R+WLGTF T            + + G +A 
Sbjct:    38 VVSKHPNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAH 97

Query:    61 TNFPVTQSSNGDPAQPXXXXXXXXPTNELSQL-LHAKLRKCSKTPSPSMT 109
              NFP        PA               + + +   +   S +PSP++T
Sbjct:    98 LNFPELAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVT 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0009834 "secondary cell wall biogenesis" evidence=TAS

TAIR|locus:2085527 DREB2B "DRE/CRT-binding protein 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
 Identities = 30/66 (45%), Positives = 36/66 (54%)

Query:     4 SNKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNF 63
             S+  FRGVRQR WG WV+EIR P +  R+WLGTF T              M G  A+ NF
Sbjct:    74 SHCSFRGVRQRIWGKWVAEIREPKIGTRLWLGTFPTAEKAASAYDEAATAMYGSLARLNF 133

Query:    64 PVTQSS 69
             P +  S
Sbjct:   134 PQSVGS 139

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=TAS

GO:0010286 "heat acclimation" evidence=IEP

GO:0009555 "pollen development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI33	WIN1_ARATH	No assigned EC number	0.5990	0.8894	0.9698	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: DREB31 AP2/ERF domain-containing transcription factor (190 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-36
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	6e-34
pfam00847	53	pfam00847, AP2, AP2 domain	1e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  121 bits (306), Expect = 2e-36
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 7  KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT 66
          K+RGVRQR WG WV+EIR P   +RVWLGTF+TAEEAARAYD+AA    GR+A+ NFP +
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  115 bits (290), Expect = 6e-34
 Identities = 39/61 (63%), Positives = 48/61 (78%)

Query: 6  KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPV 65
           K+RGVRQR WG WV+EIR P   RR+WLGTF+TAEEAARAYD+AA+ + G +A  NFP 
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 66 T 66
          +
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.0 bits (159), Expect = 1e-14
 Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 6  KKFRGVRQRH-WGSWVSEIRHP--LLKRRVWLGTFETAEEAARAYDQAAILMSG 56
            ++GVR    WG WV+EIR P    K+R  LGTF T EEAARA   A + + G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.86
PHA00280	121	putative NHN endonuclease	99.51
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.26
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.76

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=5.4e-22  Score=139.86  Aligned_cols=61  Identities=64%  Similarity=1.123  Sum_probs=58.7

Q ss_pred             CceeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 027896            6 KKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT   66 (217)
Q Consensus         6 S~yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~   66 (217)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999999999999999998899999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.86  E-value=1.2e-21  Score=139.81  Aligned_cols=63  Identities=63%  Similarity=1.111  Sum_probs=60.1

Q ss_pred             ceeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCCCCC
Q 027896            7 KFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVTQSS   69 (217)
Q Consensus         7 ~yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~~y~   69 (217)
                      +|+||+++++|||+|+|+++..++++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999888999999999976799999999999999999999999999999999999999886

>PHA00280 putative NHN endonuclease

Probab=99.51  E-value=3e-14  Score=114.75  Aligned_cols=55  Identities=13%  Similarity=0.216  Sum_probs=50.9

Q ss_pred             CCCCceeeeEeCC-CCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCc
Q 027896            3 QSNKKFRGVRQRH-WGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAK   60 (217)
Q Consensus         3 ~~sS~yRGVr~r~-~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~   60 (217)
                      .|+|+|+||+|++ .|||+|+|++.  ||+++||.|+|+|+|+.||+ ++.+++|++|.
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I~~~--gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTVTAE--GKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEEEEC--CEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            5789999999876 89999999999  99999999999999999997 78899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.26  E-value=1.1e-11  Score=85.29  Aligned_cols=52  Identities=31%  Similarity=0.444  Sum_probs=45.6

Q ss_pred             CceeeeEeCC-CCcEEEEEeeCCC---CcEEeecCCcCHHHHHHHHHHHHHHhcCC
Q 027896            6 KKFRGVRQRH-WGSWVSEIRHPLL---KRRVWLGTFETAEEAARAYDQAAILMSGR   57 (217)
Q Consensus         6 S~yRGVr~r~-~GKW~A~I~~~~~---~krv~LGtFdT~EEAArAYD~AAik~~G~   57 (217)
                      |+|+||++++ .++|+|+|++...   +++++||.|++++||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899998877 8999999998321   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.76  E-value=5.9  Score=26.22  Aligned_cols=38  Identities=16%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             cEEEEEe--eCCCC--cEEeecCCcCHHHHHHHHHHHHHHhc
Q 027896           18 SWVSEIR--HPLLK--RRVWLGTFETAEEAARAYDQAAILMS   55 (217)
Q Consensus        18 KW~A~I~--~~~~~--krv~LGtFdT~EEAArAYD~AAik~~   55 (217)
                      +|..+|.  ++..|  ++++-+.|.|..||-.+...+-..+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  43334  67888999999999999888766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-08
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		5e-08

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 6  KKFRGVRQRHWGSWVSEIRHPLLK-RRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFP 64
          K +RGVRQR WG + +EIR P     RVWLGTFET              M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 65 V 65
          +
Sbjct: 61 L 61

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 6  KKFRGVRQRHWGSWVSEIRHPLLK-RRVWLGTFETXXXXXXXXXXXXILMSGRNAKTNFP 64
          K +RGVRQR WG + +EIR P     RVWLGTFET              M G  A  NFP
Sbjct: 4  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 65 VTQSS 69
          +  +S
Sbjct: 64 LRVNS 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-34

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  115 bits (289), Expect = 6e-34
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 6  KKFRGVRQRHWGSWVSEIRHPLLKR-RVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
          K +RGVRQR WG + +EIR P     RVWLGTFETAE+AA AYD+AA  M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 65 V 65
          +
Sbjct: 61 L 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.71
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.85

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=1.9e-25  Score=159.60  Aligned_cols=61  Identities=61%  Similarity=1.011  Sum_probs=57.5

Q ss_pred             CceeeeEeCCCCcEEEEEeeCCC-CcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 027896            6 KKFRGVRQRHWGSWVSEIRHPLL-KRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT   66 (217)
Q Consensus         6 S~yRGVr~r~~GKW~A~I~~~~~-~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~   66 (217)
                      .+||||++++||||+|+|+++.+ |+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            37999999999999999999864 69999999999999999999999999999999999986

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.71  E-value=0.053  Score=39.95  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=22.6

Q ss_pred             CCCCceeeeEeCC-CCcEEEEEeeCCCCcEE
Q 027896            3 QSNKKFRGVRQRH-WGSWVSEIRHPLLKRRV   32 (217)
Q Consensus         3 ~~sS~yRGVr~r~-~GKW~A~I~~~~~~krv   32 (217)
                      ..+|+|+||+|.+ .+.|.|.-..+  |++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~--g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDG--ASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEET--TEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecC--CeEe
Confidence            5689999998887 79999998887  6543

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.85  E-value=0.21  Score=40.32  Aligned_cols=38  Identities=5%  Similarity=-0.102  Sum_probs=28.3

Q ss_pred             eeeeEeCCCCcEEEEEeeCCCCcEEeecCCcCHHHHHHHHH
Q 027896            8 FRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYD   48 (217)
Q Consensus         8 yRGVr~r~~GKW~A~I~~~~~~krv~LGtFdT~EEAArAYD   48 (217)
                      ++||.+...++|.+.|...   +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            3455442246688999886   4567999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	6e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (266), Expect = 6e-31
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 6  KKFRGVRQRHWGSWVSEIRHPLLK-RRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFP 64
          K +RGVRQR WG + +EIR P     RVWLGTFETAE+AA AYD+AA  M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 65 V 65
          +
Sbjct: 61 L 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1e-25  Score=159.76  Aligned_cols=60  Identities=60%  Similarity=1.005  Sum_probs=56.1

Q ss_pred             ceeeeEeCCCCcEEEEEeeCC-CCcEEeecCCcCHHHHHHHHHHHHHHhcCCCCccCCCCC
Q 027896            7 KFRGVRQRHWGSWVSEIRHPL-LKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPVT   66 (217)
Q Consensus         7 ~yRGVr~r~~GKW~A~I~~~~-~~krv~LGtFdT~EEAArAYD~AAik~~G~~A~~NFp~~   66 (217)
                      .||||+++++|||+|+|+++. .++++|||+|+|+||||+|||.||++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999999999999999864 458999999999999999999999999999999999985