Citrus Sinensis ID: 027913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MILNSSSSSVSSAINTTCSSRKTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEcccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHccccccccccccccccccHHHHHHcccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEEEEEEccccHHHHHccc
Coil and Loop (DISEMBL)
milnsssssvSSAINttcssrktpptsrnqlsineqlcggkscccgsrrhfiqgasTALFplvysstpssasspsdsmamlnrlhpprpdwyEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIgigtgpnlkyyaadtdvqvlgvdpnrkMEKYAQTAAVAAGLPLTNFKFLQAVgeaipvsdasvDAVVGTLVLCSVkdvdmtlqap
Flexible Loop (DISEMBL)
milnsssssvssainttcssrktpptsrnqlSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGigtgpnlkyyaaDTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSvkdvdmtlqap
Low Complexity Region (SEG)
MILNsssssvssAINTTCSSRKTPPTSRNQLSINEQLcggkscccgsRRHFIQGASTALFPLVYsstpssasspsdsmamLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP
Disordered region (IsUnstruct)
*********************************NEQLCGGKSCCCGSRRHFIQGASTALFPLVY*************************DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD******
Disordered Region (DISOPRED)
********************************************CGSRRHFIQGASTALFPLVYSS***********MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ**
Disordered Region (DISEMBL)
***************************RNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVY*************MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP
Disordered Region (DISPRO)
**************************************GGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILNSSSSSVSSAINTTCSSRKTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9H8H3	244	Methyltransferase-like pr	yes	no	0.488	0.434	0.391	7e-11
Q9DD20	244	Methyltransferase-like pr	no	no	0.539	0.479	0.379	4e-09
Q562C4	244	Methyltransferase-like pr	no	no	0.529	0.471	0.377	4e-09
Q6UX53	244	Methyltransferase-like pr	no	no	0.603	0.536	0.326	2e-08

>sp|Q9H8H3|MET7A_HUMAN Methyltransferase-like protein 7A OS=Homo sapiens GN=METTL7A PE=1 SV=1

 Score = 67.4 bits (163), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 9/115 (7%)

Query: 107 YEAEVAGYKSQLFDNLRGKAK-----KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
           Y  ++A  K +LF NL+  A       +LE+G GTG N K+Y     V    +DPN   E
Sbjct: 47  YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGCRVTC--IDPNPNFE 104

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+
Sbjct: 105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILR 158

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9DD20|MET7B_MOUSE Methyltransferase-like protein 7B OS=Mus musculus GN=Mettl7b PE=2 SV=2

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)

Query: 95  FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKV--LEIGIGTGPNLKYYAADTDVQVL 152
           F A +   S K  E++     SQ+ D L+G +  V  LE+G GTG N ++Y     V   
Sbjct: 39  FMAMLTARSYKKMESKKRELFSQIKD-LKGTSGNVALLELGCGTGANFQFYPQGCKVTC- 96

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVD 211
            VDPN   EK+  T ++A    L   +F+ A GE +  ++D+S+D VV TLVLCSV+   
Sbjct: 97  -VDPNPNFEKFL-TKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPR 154

Query: 212 MTLQ 215
             LQ
Sbjct: 155 KVLQ 158

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q562C4|MET7B_RAT Methyltransferase-like protein 7B OS=Rattus norvegicus GN=Mettl7b PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 7/122 (5%)

Query: 97  ASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKV--LEIGIGTGPNLKYYAADTDVQVLGV 154
           A++   S K  E++     SQ+ D L+G + +V  LE+G GTG N ++Y     V    V
Sbjct: 41  ATLTARSYKKMESKKRELFSQIKD-LKGTSNEVTLLELGCGTGANFQFYPPGCKVTC--V 97

Query: 155 DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMT 213
           DPN   EK+  T ++A    L   +F+ A GE +  ++D+S+D VV TLVLCSV+     
Sbjct: 98  DPNPNFEKFL-TKSMAENRHLQYERFIVAYGENMKQLADSSMDVVVCTLVLCSVQSPRKV 156

Query: 214 LQ 215
           LQ
Sbjct: 157 LQ 158

Probable methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6UX53|MET7B_HUMAN Methyltransferase-like protein 7B OS=Homo sapiens GN=METTL7B PE=2 SV=2

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 13/144 (9%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKK-----VLEI 132
           MA+L    P    ++    A +   S +  E++    K +LF  ++G         +LE+
Sbjct: 22  MALLGCWQPLCKSYFPYLMAVLTPKSNRKMESK----KRELFSQIKGLTGASGKVALLEL 77

Query: 133 GIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVS 191
           G GTG N ++Y     V  L  DPN   EK+  T ++A    L   +F+ A GE +  ++
Sbjct: 78  GCGTGANFQFYPPGCRVTCL--DPNPHFEKFL-TKSMAENRHLQYERFVVAPGEDMRQLA 134

Query: 192 DASVDAVVGTLVLCSVKDVDMTLQ 215
           D S+D VV TLVLCSV+     LQ
Sbjct: 135 DGSMDVVVCTLVLCSVQSPRKVLQ 158

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225425648	306	PREDICTED: methyltransferase-like protei	0.774	0.549	0.718	2e-68
224101379	317	predicted protein [Populus trichocarpa]	0.935	0.640	0.610	2e-67
356499831	312	PREDICTED: methyltransferase-like protei	0.783	0.544	0.674	3e-64
449435332	317	PREDICTED: methyltransferase-like protei	0.797	0.545	0.661	3e-61
449478656	317	PREDICTED: methyltransferase-like protei	0.797	0.545	0.661	1e-60
449434764	307	PREDICTED: methyltransferase-like protei	0.940	0.664	0.573	2e-60
388500316	323	unknown [Lotus japonicus]	0.783	0.526	0.644	1e-59
255562908	310	S-adenosylmethionine-dependent methyltra	0.751	0.525	0.703	5e-59
357487139	375	Methyltransferase-like protein 7A [Medic	0.783	0.453	0.626	6e-58
18409299	300	S-adenosylmethionine-dependent methyltra	0.824	0.596	0.572	3e-51

>gi|225425648|ref|XP_002272557.1| PREDICTED: methyltransferase-like protein 7A [Vitis vinifera] gi|296086353|emb|CBI31942.3| unnamed protein product [Vitis vinifera]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/174 (71%), Positives = 146/174 (83%), Gaps = 6/174 (3%)

Query: 43  CCCGSRRHFIQGASTALFPLVYSSTPSSASSP-SDSMAMLNRLHPPRPDWYEEFYASVMN 101
           C CG RRH IQ  +TAL P+    +PS A+   SDS AMLNR+HPPRPDWYEE YA+V++
Sbjct: 53  CSCG-RRHLIQACATALLPI----SPSHATPLLSDSTAMLNRVHPPRPDWYEELYAAVLD 107

Query: 102 SSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             M++YEAE+AGYKSQLF NLRGKAKKVLEIGIGTGPNLKYYA  TD++V G+DPN KME
Sbjct: 108 KGMEAYEAEIAGYKSQLFSNLRGKAKKVLEIGIGTGPNLKYYANGTDIEVFGIDPNMKME 167

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           KYA+ AAVA+GLP TNFKF+ AVGEA+P+SDA+VDAVVGTLVLCSVKDVD  L+
Sbjct: 168 KYAKAAAVASGLPPTNFKFIHAVGEALPLSDAAVDAVVGTLVLCSVKDVDTALK 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101379|ref|XP_002312254.1| predicted protein [Populus trichocarpa] gi|222852074|gb|EEE89621.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/218 (61%), Positives = 165/218 (75%), Gaps = 15/218 (6%)

Query: 5   SSSSSVSSAINTTCSSRKTPPTSRNQLSINEQL--CGGKSCCCGSRRHFIQGASTALFPL 62
           +S+ +++  +N        P +S      N +L     +SC CG RRHF++ ASTALFP+
Sbjct: 23  TSTPTIAPFLNPVTRQSNQPDSSGRSEENNGELLRASSRSCMCG-RRHFLEAASTALFPI 81

Query: 63  VYSSTPSSASSPSDSM-----AMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQ 117
                PS AS   D++      +LNR+HPPRPDWY+EFYASV+NS+++ YEAEVA YK+Q
Sbjct: 82  C----PSIAS---DNLQPRYKTVLNRVHPPRPDWYDEFYASVLNSTVEPYEAEVAVYKTQ 134

Query: 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN 177
           LF NLRGKAKKVLEIGIGTGPNLKYYA   D+QV GVDPN KMEK+AQ +AVAAGLPL+N
Sbjct: 135 LFTNLRGKAKKVLEIGIGTGPNLKYYANSADIQVYGVDPNTKMEKFAQESAVAAGLPLSN 194

Query: 178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           F+F+QAVGEAIP++DASVDAVVGTLVLCSV++V  TLQ
Sbjct: 195 FEFIQAVGEAIPLNDASVDAVVGTLVLCSVEEVGQTLQ 232

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499831|ref|XP_003518740.1| PREDICTED: methyltransferase-like protein 7A-like [Glycine max]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/178 (67%), Positives = 147/178 (82%), Gaps = 8/178 (4%)

Query: 41  KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSP-SDSMAMLNRLHPPRPDWYEEFYA 97
           K C CG RRHFI+ A+  T LFP+     PS A++P  +  A+L + HPPRPDWYEEFYA
Sbjct: 55  KPCFCG-RRHFIEAATLGTTLFPI----QPSRATNPPREYTALLKKFHPPRPDWYEEFYA 109

Query: 98  SVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN 157
           SVMNS+ K YEAEVA YKSQ+F NL+GK  ++LEIGIGTGPNL YYA+ + V+V+G+DPN
Sbjct: 110 SVMNSATKDYEAEVAMYKSQIFGNLKGKGLRILEIGIGTGPNLSYYASGSGVEVVGIDPN 169

Query: 158 RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
            KMEKYA+++A +AGLP +NF+F+QAVGEAIP+SDASVDAVVGTLVLCSVKDVDMTL+
Sbjct: 170 PKMEKYARSSAASAGLPTSNFEFIQAVGEAIPLSDASVDAVVGTLVLCSVKDVDMTLK 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435332|ref|XP_004135449.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 139/183 (75%), Gaps = 10/183 (5%)

Query: 37  LCGGKSCCCGSRRHFIQGASTA----LFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWY 92
           LC   SC CG RR FI+ A+      LFP + SS PSS     D   MLNR+H P+P+WY
Sbjct: 56  LCQNHSCMCG-RRQFIEAAAATSLLPLFPSMASSNPSS-----DYTDMLNRVHSPKPEWY 109

Query: 93  EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVL 152
           E+FYAS + +SMKSYE E+A YKSQ+F NLRGK++KVLEIGIG GPNLKYYA D  VQV 
Sbjct: 110 EDFYASFLANSMKSYEEEIADYKSQMFANLRGKSQKVLEIGIGAGPNLKYYAGDEGVQVY 169

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
           GVDPN+KMEKYA+ AA  AGLP  NF F QAVGEAIP+ DASVDAVVGTLVLCSV +VDM
Sbjct: 170 GVDPNQKMEKYAREAAQNAGLPPENFVFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDM 229

Query: 213 TLQ 215
           TL+
Sbjct: 230 TLK 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478656|ref|XP_004155382.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 138/183 (75%), Gaps = 10/183 (5%)

Query: 37  LCGGKSCCCGSRRHFIQGASTA----LFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWY 92
           LC   SC CG RR FI+ A+      LFP + SS PSS     D   MLNR+H P+P+WY
Sbjct: 56  LCQNHSCMCG-RRQFIEAAAATSLLPLFPSMASSNPSS-----DYTDMLNRVHSPKPEWY 109

Query: 93  EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVL 152
           E+FYAS + +SMKSYE E+A YKSQ+F NL GKA+KVLEIGIG GPNLKYYA D  VQV 
Sbjct: 110 EDFYASFLANSMKSYEEEIADYKSQMFANLSGKAQKVLEIGIGAGPNLKYYAGDEGVQVY 169

Query: 153 GVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
           GVDPN+KMEKYA+ AA  AGLP  NF F QAVGEAIP+ DASVDAVVGTLVLCSV +VDM
Sbjct: 170 GVDPNQKMEKYAREAAQNAGLPPENFVFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDM 229

Query: 213 TLQ 215
           TL+
Sbjct: 230 TLK 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434764|ref|XP_004135166.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus] gi|449478387|ref|XP_004155304.1| PREDICTED: methyltransferase-like protein 7A-like [Cucumis sativus]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/218 (57%), Positives = 159/218 (72%), Gaps = 14/218 (6%)

Query: 2   ILNSSSSSVSSAINTTCSSR---KTPPTSRNQLSINEQLCGGKSCCCGSRRHFIQGAS-T 57
           I N+S  +   + ++ C+ +   + PP  R         C   SC CG RR FI+ A+ T
Sbjct: 15  ISNASQQAKPRSSSSNCAHQSIPEAPPFPR-------LFCHNHSCLCG-RRRFIEAATAT 66

Query: 58  ALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQ 117
           +LFPL  S   +S++SPSD  A+LNR+  P+PDWYE+FYASV+ + MKSYE E+A YKSQ
Sbjct: 67  SLFPLCPSM--ASSNSPSDYAAILNRVRSPKPDWYEDFYASVLANGMKSYEEEIAVYKSQ 124

Query: 118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN 177
           +F NLRGK++KVLEIGIG GPNLKYYA +  ++V GVDPN+KMEKYA+ AA  AGLP  +
Sbjct: 125 MFANLRGKSQKVLEIGIGAGPNLKYYAGNEGMEVYGVDPNQKMEKYAREAAKNAGLPPES 184

Query: 178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           F+F QAVGEAIP+ DASVDAVVGTLVLCSV +VDMTL+
Sbjct: 185 FEFKQAVGEAIPLPDASVDAVVGTLVLCSVTNVDMTLR 222

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500316|gb|AFK38224.1| unknown [Lotus japonicus]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 142/180 (78%), Gaps = 10/180 (5%)

Query: 41  KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASS---PSDSMAMLNRLHPPRPDWYEEF 95
           K C CG RR FI+ A+  T  FP+     P+ AS+    SD   +LN+ HPPRPDWYEE 
Sbjct: 64  KPCFCG-RRRFIEAATLGTTRFPI----QPARASNLEPDSDYKVLLNKFHPPRPDWYEEL 118

Query: 96  YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVD 155
           YA V+NS+ KSYEAEVA YKSQ+F NL+GKA ++LEIGIG G NL YY +D  VQV+G+D
Sbjct: 119 YAWVLNSATKSYEAEVAKYKSQIFSNLKGKANRILEIGIGPGLNLSYYGSDPGVQVVGID 178

Query: 156 PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           PN KMEKYAQ++A +AGLPL+NF+F+QAVGE+IP+SDASVDAVVGTLVLCSVK VD+TL+
Sbjct: 179 PNLKMEKYAQSSAESAGLPLSNFEFIQAVGESIPLSDASVDAVVGTLVLCSVKYVDLTLK 238

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562908|ref|XP_002522459.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223538344|gb|EEF39951.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 121/172 (70%), Positives = 135/172 (78%), Gaps = 9/172 (5%)

Query: 45  CGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSM 104
           CG RRHF++   T+L   V S  P++AS      A +N++ PPRPDWYEE YASV+NS M
Sbjct: 62  CG-RRHFLE---TSLLSAV-SDAPANASG---YKATMNKVRPPRPDWYEELYASVLNSDM 113

Query: 105 -KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
             SYEAE+A YKSQLF NLRGKAKKVLEIGIGTGPNLKYY  D DV+V GVDPN KM KY
Sbjct: 114 MNSYEAEIAAYKSQLFANLRGKAKKVLEIGIGTGPNLKYYGNDDDVEVFGVDPNGKMVKY 173

Query: 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           AQ AA AAGLP  NFKF+ AVGEAIP+SDASVDAVVGTLVLCSV +VD TLQ
Sbjct: 174 AQKAAEAAGLPPANFKFIHAVGEAIPLSDASVDAVVGTLVLCSVTNVDQTLQ 225

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487139|ref|XP_003613857.1| Methyltransferase-like protein 7A [Medicago truncatula] gi|355515192|gb|AES96815.1| Methyltransferase-like protein 7A [Medicago truncatula]

 Score =  229 bits (584), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 146/182 (80%), Gaps = 12/182 (6%)

Query: 41  KSCCCGSRRHFIQGASTAL-----FPLVYSSTPSSASS-PSDSMAMLNRLHPPRPDWYEE 94
           K C CG RRHFI+ A+T       FP+     P++A++  SD  A++N+ HPP+PDWY++
Sbjct: 75  KPCLCG-RRHFIEAAATTTLTATQFPV----QPATATNFDSDYTALVNKFHPPKPDWYQK 129

Query: 95  FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLG 153
           F A  +NS  KSYEAEVA YKSQ+F NL+  KA K+LEIGIGTGPNL YY +++DVQV+G
Sbjct: 130 FMAWALNSCTKSYEAEVAQYKSQIFSNLKEKKANKILEIGIGTGPNLSYYTSNSDVQVVG 189

Query: 154 VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMT 213
           +DPN +MEKYA++AAV+AGLPL+NF+F+ AVGE IP+SDASVDAVVGTLVLCSVKDVD+T
Sbjct: 190 IDPNPEMEKYARSAAVSAGLPLSNFEFIHAVGEVIPLSDASVDAVVGTLVLCSVKDVDLT 249

Query: 214 LQ 215
           L+
Sbjct: 250 LK 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409299|ref|NP_564969.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|15450409|gb|AAK96498.1| At1g69520/F10D13_17 [Arabidopsis thaliana] gi|20466111|gb|AAM19977.1| At1g69520/F10D13_17 [Arabidopsis thaliana] gi|332196817|gb|AEE34938.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/185 (57%), Positives = 128/185 (69%), Gaps = 6/185 (3%)

Query: 31  LSINEQLCGGKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPD 90
           L   E +   + C CG RRHFI  A T++ P +    P S S  S S   L RL PP+PD
Sbjct: 36  LITTESVSSFRFCPCG-RRHFIGAAMTSM-PFL----PISPSHASTSTEDLKRLRPPKPD 89

Query: 91  WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQ 150
           WYEEF+A  MNS ++SYE EV+ YK +LFDNL GKA+KVLEIGIGTGPN KYY    +V 
Sbjct: 90  WYEEFFAWSMNSEVESYEKEVSDYKMKLFDNLVGKAEKVLEIGIGTGPNFKYYTDIPNVS 149

Query: 151 VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV 210
           V+G+DPN KME YA+ +A  AGL    F F+ A+GE+IP+ DASVDAVVGTLVLCSV DV
Sbjct: 150 VIGIDPNAKMESYARKSATEAGLKPEEFTFVHALGESIPLEDASVDAVVGTLVLCSVTDV 209

Query: 211 DMTLQ 215
             TL+
Sbjct: 210 TQTLK 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:505006213	300	AT1G69523 [Arabidopsis thalian	0.751	0.543	0.571	1.2e-44
TAIR|locus:505006214	307	AT1G69526 [Arabidopsis thalian	0.746	0.527	0.502	1.8e-39
UNIPROTKB|J9NTA1	245	METTL7A "Uncharacterized prote	0.543	0.481	0.389	2.7e-13
RGD|2323731	166	LOC100362962 "methyltransferas	0.488	0.638	0.426	3.4e-13
UNIPROTKB|F1N7H2	179	LOC781439 "Uncharacterized pro	0.488	0.592	0.408	4.4e-13
UNIPROTKB|Q3MHK8	244	METTL7A "Uncharacterized prote	0.488	0.434	0.408	4.4e-13
UNIPROTKB|F8VQX6	180	METTL7A "Methyltransferase-lik	0.488	0.588	0.4	9.1e-13
UNIPROTKB|H0YI09	244	METTL7A "Methyltransferase-lik	0.488	0.434	0.4	9.1e-13
UNIPROTKB|Q9H8H3	244	METTL7A "Methyltransferase-lik	0.488	0.434	0.4	9.1e-13
ZFIN|ZDB-GENE-061027-239	242	mettl7a "methyltransferase lik	0.562	0.504	0.351	3.1e-12

TAIR|locus:505006213 AT1G69523 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 96/168 (57%), Positives = 116/168 (69%)

Query:    48 RRHFIQGASTALFPLVYXXXXXXXXXXXXXXXXLNRLHPPRPDWYEEFYASVMNSSMKSY 107
             RRHFI  A T++ P +                 L RL PP+PDWYEEF+A  MNS ++SY
Sbjct:    52 RRHFIGAAMTSM-PFL----PISPSHASTSTEDLKRLRPPKPDWYEEFFAWSMNSEVESY 106

Query:   108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
             E EV+ YK +LFDNL GKA+KVLEIGIGTGPN KYY    +V V+G+DPN KME YA+ +
Sbjct:   107 EKEVSDYKMKLFDNLVGKAEKVLEIGIGTGPNFKYYTDIPNVSVIGIDPNAKMESYARKS 166

Query:   168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             A  AGL    F F+ A+GE+IP+ DASVDAVVGTLVLCSV DV  TL+
Sbjct:   167 ATEAGLKPEEFTFVHALGESIPLEDASVDAVVGTLVLCSVTDVTQTLK 214

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

TAIR|locus:505006214 AT1G69526 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 84/167 (50%), Positives = 111/167 (66%)

Query:    48 RRHFIQGASTALFPLVYXXXXXXXXXXXXXXXXLNRLHPPRPDWYEEFYASVMNSSMKSY 107
             R+HF++ AS  + P +                     HP RPDWY+E +A  +++ M+SY
Sbjct:    58 RKHFLEAASPTM-PFLPICSPNASRSKDVSET----FHPQRPDWYKELFAWFLSTGMRSY 112

Query:   108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
             EAE+A YK +LF+ L GKA+ VLEIG+GTGPNLKY+A + +V V G+DPN KMEKYA  +
Sbjct:   113 EAEIAEYKRKLFEKLAGKAETVLEIGVGTGPNLKYFAGNENVCVFGMDPNHKMEKYACES 172

Query:   168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
             A  AG+   NF+F+  VGEAIP+ D S+D+VV TLVLCSV DV  TL
Sbjct:   173 AREAGMKPENFRFMHGVGEAIPLDDDSMDSVVATLVLCSVSDVTQTL 219

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA;ISS

UNIPROTKB|J9NTA1 METTL7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 51/131 (38%), Positives = 70/131 (53%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAK-----KVLEIGIGTGPNLKYYAA 145
             W+  F A    S M  Y   +AG K +LF +L+  A       +LE+G GTG N ++Y  
Sbjct:    36 WFPHFLARF--SVM--YNERMAGRKRELFGSLQAFAGPSGRLSLLEVGCGTGANFQFYPP 91

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
                 +V  VDPN   EK+    ++A    L   +F+ A GE +P V+D SVD VV TLVL
Sbjct:    92 GC--RVTCVDPNPNFEKFL-IKSIAENRHLQFERFVVAAGEDMPQVADGSVDVVVCTLVL 148

Query:   205 CSVKDVDMTLQ 215
             CSV+D    L+
Sbjct:   149 CSVRDQGQILR 159

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|2323731 LOC100362962 "methyltransferase like 7A-like" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 49/115 (42%), Positives = 66/115 (57%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMATRKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    +VA    L   +FL AVGE +  V+D SVD VV TLVLCSVK  +  L+
Sbjct:   105 KFL-FKSVAENRHLQFERFLVAVGEDMHQVADGSVDVVVCTLVLCSVKSQEKILR 158

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1N7H2 LOC781439 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 47/115 (40%), Positives = 65/115 (56%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++   K +LF NLR   G + K+  LE+G GTG N K+Y +    QV  VDPN   E
Sbjct:    47 YNKQMESKKQELFSNLREFTGPSGKLSLLELGCGTGANFKFYPSGC--QVTCVDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    ++A    L   +F+ A GE +  V+  S+D VV TLVLCSVK+ +  LQ
Sbjct:   105 KFL-IKSIAQNRHLQFERFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQ 158

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q3MHK8 METTL7A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 47/115 (40%), Positives = 65/115 (56%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++   K +LF NLR   G + K+  LE+G GTG N K+Y +    QV  VDPN   E
Sbjct:    47 YNKQMESKKQELFSNLREFMGPSGKLSLLELGCGTGANFKFYPSGC--QVTCVDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    ++A    L   +F+ A GE +  V+  S+D VV TLVLCSVK+ +  LQ
Sbjct:   105 KFL-IKSIAQNRHLQFERFIVAAGENMHQVASGSMDVVVCTLVLCSVKNQEQILQ 158

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F8VQX6 METTL7A "Methyltransferase-like protein 7A" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 46/115 (40%), Positives = 66/115 (57%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+
Sbjct:   105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILR 158

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|H0YI09 METTL7A "Methyltransferase-like protein 7A" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 46/115 (40%), Positives = 66/115 (57%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+
Sbjct:   105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILR 158

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q9H8H3 METTL7A "Methyltransferase-like protein 7A" [Homo sapiens (taxid:9606)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 46/115 (40%), Positives = 66/115 (57%)

Query:   107 YEAEVAGYKSQLFDNLR---GKAKKV--LEIGIGTGPNLKYYAADTDVQVLGVDPNRKME 161
             Y  ++A  K +LF NL+   G + K+  LE+G GTG N K+Y      +V  +DPN   E
Sbjct:    47 YNEQMASKKRELFSNLQEFAGPSGKLSLLEVGCGTGANFKFYPPGC--RVTCIDPNPNFE 104

Query:   162 KYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             K+    ++A    L   +F+ A GE +  V+D SVD VV TLVLCSVK+ +  L+
Sbjct:   105 KFL-IKSIAENRHLQFERFVVAAGENMHQVADGSVDVVVCTLVLCSVKNQERILR 158

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-061027-239 mettl7a "methyltransferase like 7A" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 46/131 (35%), Positives = 70/131 (53%)

Query:    91 WYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR----GKAK-KVLEIGIGTGPNLKYYAA 145
             +Y+  +  ++     SY  ++   K +LF NL      K   ++LE+G G+G N ++Y  
Sbjct:    30 FYKRVFPIIVYKISFSYNDKMNDKKRELFRNLDRFYPSKGSLRILEVGCGSGANFEHYP- 88

Query:   146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTLVL 204
              T  ++   DPN   +KY + + +     L    F+ A GE +  V D+SVDAVV TLVL
Sbjct:    89 -TGSKITCTDPNPHFKKYLEKS-MEKNEHLVYDSFIVASGENLQAVEDSSVDAVVCTLVL 146

Query:   205 CSVKDVDMTLQ 215
             CSVKD +  LQ
Sbjct:   147 CSVKDTNKVLQ 157

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036939001 SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (306 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	9e-14
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	8e-12
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-08
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-08
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	5e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-07
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	1e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	4e-06
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	2e-05
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	3e-05
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	3e-04
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	9e-04
PRK11873	272	PRK11873, arsM, arsenite S-adenosylmethyltransfera	0.004
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	0.004

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 64.2 bits (157), Expect = 9e-14
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           L++G GTG   +  A     +V GVD + +M   A+  A          KF+    E +P
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRA--------PRKFVVGDAEDLP 52

Query: 190 VSDASVDAVVGTLVLCSVKDVDMTLQ 215
             D S D VV +LVL  + D +  L+
Sbjct: 53  FPDESFDVVVSSLVLHHLPDPERALR 78

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 61.9 bits (151), Expect = 8e-12
 Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 111 VAGYKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTA 167
              Y+++ F+ L  +   +VL++G G G + +  A     + +V+G+D +  M   A+  
Sbjct: 4   FRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63

Query: 168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
           A   G    N +F++   + +P  D S DAV    VL  ++D  
Sbjct: 64  AAGLGP---NVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPA 104

Length = 241

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGE 186
           +VL++G GTG      A+    +V GVD +    + A+ AA A      N + L+    E
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD--NVEVLKGDAEE 58

Query: 187 AIPVSDASVDAVVGTLVLCSVKD 209
             P +D S D ++    L  + +
Sbjct: 59  LPPEADESFDVIISDPPLHHLVE 81

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 53.0 bits (124), Expect = 2e-08
 Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 77  SMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGT 136
              +   L     + Y+     +    + + E        +L   L G    VL+IG GT
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGG-LGVLDIGCGT 59

Query: 137 G--PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-A 193
           G    L          V+GVD + +M   A+  A  AGL L +F    A+G  +P  D A
Sbjct: 60  GRLALLARLGGRG-AYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSA 118

Query: 194 SVDAVVGTLVLC 205
           S D V+  LVL 
Sbjct: 119 SFDLVISLLVLH 130

Length = 257

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 124 GKAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
               KVL++  GTG   L    +    +V+G+D +  M + A+      G+   N +F+ 
Sbjct: 50  KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV--QNVEFVV 107

Query: 183 AVGEAIPVSDASVDAV 198
              E +P  D S DAV
Sbjct: 108 GDAENLPFPDNSFDAV 123

Length = 238

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 9/98 (9%)

Query: 124 GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF 180
               KVL++G GTG  L +  A+      +V+G+D + +  + A+    A  L   N +F
Sbjct: 2   KSGIKVLDLGCGTG-YLTFILAEKLGPGAEVVGIDISEEAIEKAK--ENAKKLGYENVEF 58

Query: 181 LQAVGEAIP---VSDASVDAVVGTLVLCSVKDVDMTLQ 215
           +Q   E +P   + D S D V+   VL  + D D  L+
Sbjct: 59  IQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLE 96

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 18/108 (16%)

Query: 108 EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA 167
           E  +A   ++L   L+    +VL+IG GTG  L+    +    V GVDP+          
Sbjct: 6   ERFLARLLARLLPRLK-PGGRVLDIGCGTGILLR-LLRERGFDVTGVDPSPAAV------ 57

Query: 168 AVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
                       F         V     D +    VL  + D    LQ
Sbjct: 58  ----------LIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQ 95

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
              +VL+IG GTG      A      +V GVD + +M + A+  A  A  P     F+Q 
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGP--RITFVQG 58

Query: 184 VGEAIPVSDASVDAVV 199
                       DAV 
Sbjct: 59  DAPDALDLLEGFDAVF 74

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 130 LEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEA 187
           L+IG GTG  L+        ++  GVD +    + A      A L L +   ++  V +A
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERL--AALGLLDAVRVRLDVLDA 58

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           I +   S D VV + VL  + D    L+
Sbjct: 59  IDLDPGSFDVVVASNVLHHLADPRAVLR 86

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 24/117 (20%)

Query: 80  MLNRLHPPRPDW------YE---EFYASVMNSSMK------------SYEAEVAGYKSQL 118
           +LNR H  R         Y+   +FY   ++ SM               EA+ A     +
Sbjct: 7   LLNR-HSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKL-DLI 64

Query: 119 FDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
            + L  K    +L+IG G G    Y A +  V V+GV  + +   YA+    A GL 
Sbjct: 65  LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121

Length = 283

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 129 VLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI 188
           +L++G GTG  L+  A      V GVD +++  + A+      G  +   +F+ A    +
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKV---RFVVADARDL 57

Query: 189 PVSDASVDAVV 199
           P  + S D V+
Sbjct: 58  PFEEGSFDLVI 68

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 8/77 (10%)

Query: 125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
           K +KVL++  GTG     L   A D   +V GVD + +M + A+  +        N +F+
Sbjct: 39  KGQKVLDVACGTGDLAIELAKSAPDR-GKVTGVDFSSEMLEVAKKKSELPL----NIEFI 93

Query: 182 QAVGEAIPVSDASVDAV 198
           QA  EA+P  D S DAV
Sbjct: 94  QADAEALPFEDNSFDAV 110

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 39.0 bits (92), Expect = 9e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
           KVL++  GTG      A       +V+G+D +  M    +      GL   N +F+Q   
Sbjct: 54  KVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSG-NVEFVQGDA 112

Query: 186 EAIPVSDASVDAV 198
           EA+P  D S DAV
Sbjct: 113 EALPFPDNSFDAV 125

Length = 239

>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
           +V+GVD   +M   A+  A  AG   TN +F     EA+PV+D SVD ++   V+
Sbjct: 104 KVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISNCVI 156

Length = 272

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 36.9 bits (86), Expect = 0.004
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
             VL+IG GTG   +         + +  D +  M   A+T          N +F+    
Sbjct: 36  ASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSE------NVQFICGDA 89

Query: 186 EAIPVSDASVDAVVGTLVL 204
           E +P+ D+S D +V  L L
Sbjct: 90  EKLPLEDSSFDLIVSNLAL 108

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.86
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.82
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.81
KOG4300	252	consensus Predicted methyltransferase [General fun	99.8
PLN02244	340	tocopherol O-methyltransferase	99.78
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.77
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.76
PRK05785	226	hypothetical protein; Provisional	99.75
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.75
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.73
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.72
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.71
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.71
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.7
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.69
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.67
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.65
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.65
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.64
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.62
PRK11207	197	tellurite resistance protein TehB; Provisional	99.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.6
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.6
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.59
PLN02336	475	phosphoethanolamine N-methyltransferase	99.59
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.58
PRK06202	232	hypothetical protein; Provisional	99.57
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.56
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.56
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.55
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.54
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.54
PLN02490	340	MPBQ/MSBQ methyltransferase	99.54
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.54
PRK08317	241	hypothetical protein; Provisional	99.52
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.52
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.52
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.51
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.5
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.5
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.5
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.5
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.49
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.49
PRK12335	287	tellurite resistance protein TehB; Provisional	99.48
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.46
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.46
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.45
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.45
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.45
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.44
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.43
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.42
PRK06922	677	hypothetical protein; Provisional	99.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.4
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.37
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.37
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.37
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.36
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.35
PLN03075	296	nicotianamine synthase; Provisional	99.35
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.34
PLN02336	475	phosphoethanolamine N-methyltransferase	99.32
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.32
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.29
KOG1271	227	consensus Methyltransferases [General function pre	99.29
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.28
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.27
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.27
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.27
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.26
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.26
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.26
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.25
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.24
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.23
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.23
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.22
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.21
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.21
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.2
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.18
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.18
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.17
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.16
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.15
PRK14967	223	putative methyltransferase; Provisional	99.15
COG4123	248	Predicted O-methyltransferase [General function pr	99.15
TIGR03438	301	probable methyltransferase. This model represents	99.14
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.14
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.13
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.13
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.13
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.12
KOG3010	261	consensus Methyltransferase [General function pred	99.12
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.12
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.11
PHA03411	279	putative methyltransferase; Provisional	99.1
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.1
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.09
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.08
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.07
PRK14968	188	putative methyltransferase; Provisional	99.07
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.07
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.07
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.06
PRK07402	196	precorrin-6B methylase; Provisional	99.06
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.03
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.03
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.01
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.99
PHA03412	241	putative methyltransferase; Provisional	98.98
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.97
COG2890	280	HemK Methylase of polypeptide chain release factor	98.97
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.97
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.93
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.93
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.92
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.92
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.92
PRK04266	226	fibrillarin; Provisional	98.91
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.91
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.9
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.9
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.9
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.89
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.89
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.89
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.89
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.89
PRK04457	262	spermidine synthase; Provisional	98.88
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.88
KOG2940	325	consensus Predicted methyltransferase [General fun	98.86
PRK00811	283	spermidine synthase; Provisional	98.86
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.86
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.85
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.84
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.8
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.79
PLN02476	278	O-methyltransferase	98.78
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.77
PRK04148	134	hypothetical protein; Provisional	98.77
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.75
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.74
PLN02366	308	spermidine synthase	98.74
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.74
TIGR00438	188	rrmJ cell division protein FtsJ.	98.73
PLN02672	1082	methionine S-methyltransferase	98.72
KOG2904	328	consensus Predicted methyltransferase [General fun	98.71
COG4122	219	Predicted O-methyltransferase [General function pr	98.71
PTZ00146	293	fibrillarin; Provisional	98.71
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.7
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.69
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.69
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.69
PRK03612	521	spermidine synthase; Provisional	98.69
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.69
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.68
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.68
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.68
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.66
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.64
PRK01581	374	speE spermidine synthase; Validated	98.63
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.63
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.63
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.61
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.61
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.61
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.61
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.57
KOG2361	264	consensus Predicted methyltransferase [General fun	98.57
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.55
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.54
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.53
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.49
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.48
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.46
PF13679	141	Methyltransf_32: Methyltransferase domain	98.45
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.44
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.43
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.42
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.4
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.36
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.35
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.32
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.31
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.28
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.27
COG2520	341	Predicted methyltransferase [General function pred	98.26
KOG1331	293	consensus Predicted methyltransferase [General fun	98.26
PLN02823	336	spermine synthase	98.23
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.2
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.2
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.17
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.16
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.15
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.14
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.14
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.14
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.11
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.11
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	98.1
COG4076	252	Predicted RNA methylase [General function predicti	98.06
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.03
COG3897	218	Predicted methyltransferase [General function pred	98.01
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.97
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.97
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.96
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.96
KOG2899	288	consensus Predicted methyltransferase [General fun	97.95
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.95
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.92
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.92
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.9
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.87
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.86
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.86
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.84
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.83
KOG2730	263	consensus Methylase [General function prediction o	97.77
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.77
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.74
PRK00536	262	speE spermidine synthase; Provisional	97.73
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.71
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.71
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.69
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.66
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.66
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.66
COG2521	287	Predicted archaeal methyltransferase [General func	97.63
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.4
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.4
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.38
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.35
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.34
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.22
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.19
PHA01634	156	hypothetical protein	97.14
PRK10742	250	putative methyltransferase; Provisional	97.04
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.01
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.97
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.9
COG1565	370	Uncharacterized conserved protein [Function unknow	96.85
KOG3115	249	consensus Methyltransferase-like protein [General	96.85
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.81
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.79
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.75
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.72
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.71
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.65
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	96.62
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.59
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.53
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.51
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	96.19
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.13
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.09
PRK11524	284	putative methyltransferase; Provisional	96.07
PRK13699	227	putative methylase; Provisional	96.0
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	95.93
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.88
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.82
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.69
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.68
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.63
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.53
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.45
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.42
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.41
PTZ00357	1072	methyltransferase; Provisional	95.25
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.22
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.13
KOG3201	201	consensus Uncharacterized conserved protein [Funct	94.73
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	94.35
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.59
COG0286	489	HsdM Type I restriction-modification system methyl	93.5
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.49
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	93.44
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	93.06
KOG1227	351	consensus Putative methyltransferase [General func	92.95
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.59
KOG2920	282	consensus Predicted methyltransferase [General fun	92.54
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	91.35
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	91.1
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	91.04
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	91.01
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	90.69
KOG2078	495	consensus tRNA modification enzyme [RNA processing	90.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.31
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.07
KOG3924	419	consensus Putative protein methyltransferase invol	88.96
PRK07904	253	short chain dehydrogenase; Provisional	88.47
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	88.36
COG1255	129	Uncharacterized protein conserved in archaea [Func	87.87
COG1568	354	Predicted methyltransferases [General function pre	87.81
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	87.77
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	87.27
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.64
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	86.26
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	85.85
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	85.48
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.24
PLN02918	544	pyridoxine (pyridoxamine) 5'-phosphate oxidase	83.48
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	83.43
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	83.43
COG4301	321	Uncharacterized conserved protein [Function unknow	83.04
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	83.0
PRK07454	241	short chain dehydrogenase; Provisional	82.98
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	82.56
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	82.54
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	82.24
PRK09496	453	trkA potassium transporter peripheral membrane com	82.19
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	82.17
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	82.09
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.48
PRK06124	256	gluconate 5-dehydrogenase; Provisional	81.45
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	80.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	80.55
PRK08703	239	short chain dehydrogenase; Provisional	80.39
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	80.05

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.86  E-value=5.2e-21  Score=149.91  Aligned_cols=104  Identities=28%  Similarity=0.364  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ..|.+.++..+. .++.+|||||||||..+..+++ .+..+|+|+|+|+.|++.++++..+.++.  +++|+++|++.||
T Consensus        37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LP  114 (238)
T COG2226          37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLP  114 (238)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCC
Confidence            356666666665 5789999999999999999987 33568999999999999999999988874  5999999999999


Q ss_pred             CCCCceeEEEecccccccCChhhhhcCC
Q 027913          190 VSDASVDAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      |++++||+|++.++|++++|++.+|+|+
T Consensus       115 f~D~sFD~vt~~fglrnv~d~~~aL~E~  142 (238)
T COG2226         115 FPDNSFDAVTISFGLRNVTDIDKALKEM  142 (238)
T ss_pred             CCCCccCEEEeeehhhcCCCHHHHHHHH
Confidence            9999999999999999999999999984

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.82  E-value=3.5e-20  Score=146.26  Aligned_cols=102  Identities=28%  Similarity=0.410  Sum_probs=74.5

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      |++.+++... .++.+|||+|||||..+..+++.  +..+|+|+|+|++|++.|+++....+.  .+++++++|++++|+
T Consensus        35 wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~--~~i~~v~~da~~lp~  112 (233)
T PF01209_consen   35 WRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL--QNIEFVQGDAEDLPF  112 (233)
T ss_dssp             --SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S
T ss_pred             HHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC--CCeeEEEcCHHHhcC
Confidence            4444555443 57889999999999999988863  456999999999999999999998887  599999999999999


Q ss_pred             CCCceeEEEecccccccCChhhhhcCC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      ++++||+|++.+.+++++|+.++|+|+
T Consensus       113 ~d~sfD~v~~~fglrn~~d~~~~l~E~  139 (233)
T PF01209_consen  113 PDNSFDAVTCSFGLRNFPDRERALREM  139 (233)
T ss_dssp             -TT-EEEEEEES-GGG-SSHHHHHHHH
T ss_pred             CCCceeEEEHHhhHHhhCCHHHHHHHH
Confidence            999999999999999999999999873

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.81  E-value=3.2e-19  Score=144.53  Aligned_cols=150  Identities=22%  Similarity=0.392  Sum_probs=106.7

Q ss_pred             cceecCCcchhhhhcc--cccCCCccCCCCCCCCCCCChhhhhhhcCCCChhhhHHHHHHHhhhhhHhHHHHHHHHHHHH
Q 027913           41 KSCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQL  118 (217)
Q Consensus        41 ~~c~c~~~~~f~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  118 (217)
                      ...+|.++|+|+.+++  ++++|.+    .+.++.+++...|.....    .+++        .  ..|..........+
T Consensus        17 ~~~~C~~~h~fd~a~~Gy~~ll~~~----~~~~~~~~d~~~~~~ar~----~fl~--------~--g~y~~l~~~i~~~l   78 (272)
T PRK11088         17 NSWICPQNHQFDCAKEGYVNLLPVQ----HKRSKDPGDNKEMMQARR----AFLD--------A--GHYQPLRDAVANLL   78 (272)
T ss_pred             CEEEcCCCCCCccccCceEEecccc----ccCCCCCCcCHHHHHHHH----HHHH--------C--CChHHHHHHHHHHH
Confidence            4588999999999997  7888877    666666777777776532    2211        1  11333222222222


Q ss_pred             HHHhcCCCCeEEEECCcCCcchHhhhhC-C---CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-T---DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+.+.....+|||||||+|.++..+++. +   +.+++|+|+|+.|++.|+++.       .++.|.++|+..+|+++++
T Consensus        79 ~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~~~~~~~~d~~~lp~~~~s  151 (272)
T PRK11088         79 AERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------PQVTFCVASSHRLPFADQS  151 (272)
T ss_pred             HHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------CCCeEEEeecccCCCcCCc
Confidence            2233335678999999999999888753 1   247999999999999998763       4688999999999999999


Q ss_pred             eeEEEecccccccCChhhhhc
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ||+|++.+....+.+..++|+
T Consensus       152 fD~I~~~~~~~~~~e~~rvLk  172 (272)
T PRK11088        152 LDAIIRIYAPCKAEELARVVK  172 (272)
T ss_pred             eeEEEEecCCCCHHHHHhhcc
Confidence            999999887665555555554

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.80  E-value=3.7e-19  Score=133.73  Aligned_cols=134  Identities=32%  Similarity=0.411  Sum_probs=106.9

Q ss_pred             hhhhcCCCChhhhHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHH
Q 027913           80 MLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRK  159 (217)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  159 (217)
                      ..+...+....|....+...++..+..|..++..-+..++-+.  ....|||||||||.+..++--.++.+||++|+++.
T Consensus        33 n~~~~~~~~~~~p~~~ft~~yne~~~~ykrelFs~i~~~~gk~--~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~  110 (252)
T KOG4300|consen   33 NYESRQKSDLLIPNSNFTSIYNEIADSYKRELFSGIYYFLGKS--GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEK  110 (252)
T ss_pred             HHHhcCccccccchhHHHHHHHHHHHHHHHHHHhhhHHHhccc--CccceEEecccCCCCcccccCCCCceEEEeCCcHH
Confidence            3445556666777877777777777777655444433333222  44568999999999999886567889999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCeE-EEeccccccc-CCCCceeEEEecccccccCChhhhhcCC
Q 027913          160 MEKYAQTAAVAAGLPLTNFK-FLQAVGEAIP-VSDASVDAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       160 ~l~~a~~~~~~~~~~~~~v~-~~~~d~~~l~-~~~~sfD~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      |-+++.+.+.+...  .++. |++++.+++| ++++++|+|++.++|+.+.|+.+.|+|+
T Consensus       111 mee~~~ks~~E~k~--~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~  168 (252)
T KOG4300|consen  111 MEEIADKSAAEKKP--LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEV  168 (252)
T ss_pred             HHHHHHHHHhhccC--cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHH
Confidence            99999999987743  5777 9999999998 8999999999999999999999999874

>PLN02244 tocopherol O-methyltransferase

Probab=99.78  E-value=4.5e-18  Score=141.74  Aligned_cols=105  Identities=20%  Similarity=0.219  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhc------CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027913          111 VAGYKSQLFDNLR------GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (217)
Q Consensus       111 ~~~~~~~i~~~~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d  184 (217)
                      .......+++.+.      .++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.++++....++. .+++|+++|
T Consensus        98 q~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~-~~v~~~~~D  176 (340)
T PLN02244         98 QIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLS-DKVSFQVAD  176 (340)
T ss_pred             HHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcC
Confidence            4445555555543      356899999999999999998766789999999999999999999888775 579999999


Q ss_pred             cccccCCCCceeEEEecccccccCChhhhhcC
Q 027913          185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       185 ~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +..+|+++++||+|++..+++|++|+..+|+|
T Consensus       177 ~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e  208 (340)
T PLN02244        177 ALNQPFEDGQFDLVWSMESGEHMPDKRKFVQE  208 (340)
T ss_pred             cccCCCCCCCccEEEECCchhccCCHHHHHHH
Confidence            99999999999999999999999999888876

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=3.3e-19  Score=142.23  Aligned_cols=135  Identities=18%  Similarity=0.188  Sum_probs=110.1

Q ss_pred             ChhhhhhhcCCCChhhhHH---HHHHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeE
Q 027913           76 DSMAMLNRLHPPRPDWYEE---FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQV  151 (217)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v  151 (217)
                      ....+.+-.+..+..|+++   |.+.+|......++++.....+.+++++. .+|++|||||||+|.++.++++..+.+|
T Consensus        19 ~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V   98 (283)
T COG2230          19 NIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTV   98 (283)
T ss_pred             hhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEE
Confidence            3444555555555555554   55566666555677777888888899888 8999999999999999999998889999


Q ss_pred             EEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccccCC--hhhhh
Q 027913          152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTL  214 (217)
Q Consensus       152 ~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d--~~~~L  214 (217)
                      +|+++|+++.+.+++++...|+. .+++++..|.++++   +.||.|++..+|+|+..  ....+
T Consensus        99 ~GvTlS~~Q~~~~~~r~~~~gl~-~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff  159 (283)
T COG2230          99 VGVTLSEEQLAYAEKRIAARGLE-DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFF  159 (283)
T ss_pred             EEeeCCHHHHHHHHHHHHHcCCC-cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHH
Confidence            99999999999999999999996 69999999999885   44999999999999975  44443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.76  E-value=3.1e-18  Score=140.93  Aligned_cols=90  Identities=23%  Similarity=0.247  Sum_probs=79.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..++ ..+.+|+|||++++|++.|+++....+.. .+++++++|++++++++++||+|++..++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La-~~g~~V~GID~s~~~i~~Ar~~~~~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLA-RMGATVTGVDAVDKNVKIARLHADMDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHHHhcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            56799999999999999887 45779999999999999999887654432 47999999999998888899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++|+..+|++
T Consensus       209 eHv~d~~~~L~~  220 (322)
T PLN02396        209 EHVANPAEFCKS  220 (322)
T ss_pred             HhcCCHHHHHHH
Confidence            999999998875

>PRK05785 hypothetical protein; Provisional

Probab=99.75  E-value=1e-17  Score=131.96  Aligned_cols=83  Identities=23%  Similarity=0.301  Sum_probs=73.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|+++.          .++++|++.+|+++++||+|++.+++
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~----------~~~~~d~~~lp~~d~sfD~v~~~~~l  120 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD----------DKVVGSFEALPFRDKSFDVVMSSFAL  120 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc----------ceEEechhhCCCCCCCEEEEEecChh
Confidence            57899999999999999988654579999999999999998641          36789999999999999999999999


Q ss_pred             cccCChhhhhcCC
Q 027913          205 CSVKDVDMTLQAP  217 (217)
Q Consensus       205 ~~~~d~~~~L~e~  217 (217)
                      +|++|++++|+|+
T Consensus       121 ~~~~d~~~~l~e~  133 (226)
T PRK05785        121 HASDNIEKVIAEF  133 (226)
T ss_pred             hccCCHHHHHHHH
Confidence            9999999998873

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.75  E-value=2.5e-17  Score=132.58  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=79.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccccCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~~~~~sfD~V~  199 (217)
                      .++.+|||||||+|.++..+++.  +..+|+|+|+|++|++.|+++...  .... .+++++++|++.+|+++++||+|+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~-~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCY-KNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccC-CCeEEEEcccccCCCCCCCEeEEE
Confidence            46789999999999998888763  346899999999999999987532  1111 579999999999999999999999


Q ss_pred             ecccccccCChhhhhcCC
Q 027913          200 GTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       200 ~~~~l~~~~d~~~~L~e~  217 (217)
                      +.+++||++|+..+|+|+
T Consensus       151 ~~~~l~~~~d~~~~l~ei  168 (261)
T PLN02233        151 MGYGLRNVVDRLKAMQEM  168 (261)
T ss_pred             EecccccCCCHHHHHHHH
Confidence            999999999999998874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=1.1e-18  Score=134.86  Aligned_cols=88  Identities=28%  Similarity=0.349  Sum_probs=80.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++++|||||||.|.++..+| ..|..|+|+|+++.+++.|+....+.++   ++++.+..++++....++||+|+|..|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~cmEVl  134 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCeEEEecCCccHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEEEhhHH
Confidence            89999999999999999998 5569999999999999999999988886   5889999999997666899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++||+.+++.
T Consensus       135 EHv~dp~~~~~~  146 (243)
T COG2227         135 EHVPDPESFLRA  146 (243)
T ss_pred             HccCCHHHHHHH
Confidence            999999987753

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.73  E-value=1.9e-18  Score=139.39  Aligned_cols=117  Identities=19%  Similarity=0.245  Sum_probs=86.2

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC
Q 027913           95 FYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL  173 (217)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~  173 (217)
                      |.+.+|......+++........+++++. .++.+|||||||+|.++.++++..+.+|+|+++|+++.+.+++++.+.|+
T Consensus        31 YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl  110 (273)
T PF02353_consen   31 YSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL  110 (273)
T ss_dssp             -S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS
T ss_pred             CCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC
Confidence            33445555666677777778888888887 78999999999999999999987688999999999999999999999998


Q ss_pred             CCCCeEEEecccccccCCCCceeEEEecccccccC--Chhhhhc
Q 027913          174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK--DVDMTLQ  215 (217)
Q Consensus       174 ~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~--d~~~~L~  215 (217)
                      . +++++...|..+++.   +||.|++..+++|+.  +....++
T Consensus       111 ~-~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~  150 (273)
T PF02353_consen  111 E-DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFR  150 (273)
T ss_dssp             S-STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred             C-CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHH
Confidence            7 789999999988753   899999999999995  4445443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.72  E-value=1.1e-16  Score=126.65  Aligned_cols=102  Identities=21%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      .+...++..+. .++.+|||+|||+|.++..+++.  ++.+++|+|++++|++.+++++...++  .+++++.+|++.++
T Consensus        32 ~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~  109 (231)
T TIGR02752        32 KWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL--HNVELVHGNAMELP  109 (231)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEEechhcCC
Confidence            34445555555 46789999999999999988863  456899999999999999999877766  58999999999998


Q ss_pred             CCCCceeEEEecccccccCChhhhhcC
Q 027913          190 VSDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +++++||+|++.+++++++++.++|++
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~  136 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLRE  136 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHH
Confidence            888999999999999999999888765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.71  E-value=5.9e-17  Score=130.13  Aligned_cols=99  Identities=28%  Similarity=0.346  Sum_probs=85.0

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCc
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDAS  194 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~s  194 (217)
                      ..+++.+..++.+|||||||+|.++..+++ .+.+|+|+|+|++|++.|+++....++. .+++++++|+.+++ +.+++
T Consensus        35 ~~~l~~l~~~~~~vLDiGcG~G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~~-~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         35 DRLLAELPPRPLRVLDAGGGEGQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGVS-DNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHHHhcCCCCCEEEEeCCCchHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCc-cceEEEEcCHHHHhhhcCCC
Confidence            345555555678999999999999999985 4679999999999999999999888765 58999999998874 56789


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|++++..+|++
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~  134 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQT  134 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHH
Confidence            9999999999999999888765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.71  E-value=5.9e-17  Score=120.18  Aligned_cols=89  Identities=31%  Similarity=0.509  Sum_probs=79.6

Q ss_pred             CCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~  200 (217)
                      .+.+|||+|||+|.++..+++  .++.+++|+|+|++|++.|+++++..++  .+++|+++|+.+++  ++ +.||+|++
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~--~ni~~~~~d~~~l~~~~~-~~~D~I~~   79 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL--DNIEFIQGDIEDLPQELE-EKFDIIIS   79 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS--TTEEEEESBTTCGCGCSS-TTEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc--cccceEEeehhccccccC-CCeeEEEE
Confidence            578999999999999999984  4578999999999999999999999888  48999999999987  65 89999999


Q ss_pred             cccccccCChhhhhcC
Q 027913          201 TLVLCSVKDVDMTLQA  216 (217)
Q Consensus       201 ~~~l~~~~d~~~~L~e  216 (217)
                      ..+++|++++..+|++
T Consensus        80 ~~~l~~~~~~~~~l~~   95 (152)
T PF13847_consen   80 NGVLHHFPDPEKVLKN   95 (152)
T ss_dssp             ESTGGGTSHHHHHHHH
T ss_pred             cCchhhccCHHHHHHH
Confidence            9999999999887764

...

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.70  E-value=3.1e-17  Score=111.39  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=71.5

Q ss_pred             EEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccccCC
Q 027913          130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       130 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d  209 (217)
                      ||+|||+|..+..+++..+.+++++|+++++++.++++....     ++.+..+|++.+|+++++||+|++..+++|+++
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~   75 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE-----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED   75 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS-----TEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc-----CchheeehHHhCccccccccccccccceeeccC
Confidence            899999999999999776889999999999999999987543     456999999999999999999999999999999


Q ss_pred             hhhhhcCC
Q 027913          210 VDMTLQAP  217 (217)
Q Consensus       210 ~~~~L~e~  217 (217)
                      +..+|+|+
T Consensus        76 ~~~~l~e~   83 (95)
T PF08241_consen   76 PEAALREI   83 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.69  E-value=2.4e-16  Score=122.25  Aligned_cols=104  Identities=23%  Similarity=0.303  Sum_probs=89.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-C------CCeEEEecCCHHHHHHHHHHHHHcCCCCC-CeEEEecc
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-T------DVQVLGVDPNRKMEKYAQTAAVAAGLPLT-NFKFLQAV  184 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~v~~~~~d  184 (217)
                      |...++..+. .++.++||++||||..++.+.+. .      ..+|+++|+|++|+..++++.++.++... .+.|+.+|
T Consensus        88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d  167 (296)
T KOG1540|consen   88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD  167 (296)
T ss_pred             HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence            4444556665 57789999999999999888862 1      26899999999999999999988887633 39999999


Q ss_pred             cccccCCCCceeEEEecccccccCChhhhhcCC
Q 027913          185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       185 ~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      ++++||++.+||..++.+.+.++++++++|+||
T Consensus       168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~EA  200 (296)
T KOG1540|consen  168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALREA  200 (296)
T ss_pred             cccCCCCCCcceeEEEecceecCCCHHHHHHHH
Confidence            999999999999999999999999999999986

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.67  E-value=4.7e-16  Score=124.57  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=79.2

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ....+++.+. .++.+|||||||+|.++..+++ .+.+++++|+|+.|++.++++.       ....++++|++.+|+++
T Consensus        30 ~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~-------~~~~~~~~d~~~~~~~~  101 (251)
T PRK10258         30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPMLAQARQKD-------AADHYLAGDIESLPLAT  101 (251)
T ss_pred             HHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHHHHHHHhhC-------CCCCEEEcCcccCcCCC
Confidence            3344455554 3568999999999999888874 5689999999999999999874       23468999999999988


Q ss_pred             CceeEEEecccccccCChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++||+|+++.++++++|+..+|++
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~  125 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRE  125 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHH
Confidence            999999999999999999988875

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.65  E-value=4.6e-16  Score=120.70  Aligned_cols=76  Identities=25%  Similarity=0.263  Sum_probs=67.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||||||+|.++..+++. ++.+++|+|+|++|++.|+++.       .++.+.++|+.. |+++++||+|++..+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV  114 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence            6778999999999999998864 5679999999999999999864       356788999888 888899999999999


Q ss_pred             ccccC
Q 027913          204 LCSVK  208 (217)
Q Consensus       204 l~~~~  208 (217)
                      |+|++
T Consensus       115 L~hl~  119 (204)
T TIGR03587       115 LIHIN  119 (204)
T ss_pred             hhhCC
Confidence            99995

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.65  E-value=1.1e-15  Score=122.20  Aligned_cols=117  Identities=14%  Similarity=0.222  Sum_probs=89.2

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913           95 FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      .|+.......+.|+. +......++.....++.+|||||||+|..+..+++   .++.+++|+|+|+.|++.|++++...
T Consensus        27 ~yd~~~~~~~p~y~~-~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~  105 (247)
T PRK15451         27 VFPDMIQRSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY  105 (247)
T ss_pred             hhhhHHHhcCCChHH-HHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence            444444444556665 44444445555445778999999999999888775   36789999999999999999999877


Q ss_pred             CCCCCCeEEEecccccccCCCCceeEEEecccccccCCh--hhhhc
Q 027913          172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQ  215 (217)
Q Consensus       172 ~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~--~~~L~  215 (217)
                      +.. .+++++++|+..++++  .+|+|++++++||+++.  ..+|+
T Consensus       106 ~~~-~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~  148 (247)
T PRK15451        106 KAP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLD  148 (247)
T ss_pred             CCC-CCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHH
Confidence            664 5899999999988764  49999999999999753  34444

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.64  E-value=8.7e-16  Score=123.36  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ...+++.+. .++.+|||||||+|.++..+++. ++.+|+|+|+|+.|++.|++.         +++++++|++.++ ++
T Consensus        18 ~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~---------~~~~~~~d~~~~~-~~   87 (255)
T PRK14103         18 FYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER---------GVDARTGDVRDWK-PK   87 (255)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc---------CCcEEEcChhhCC-CC
Confidence            344566665 57789999999999999998863 467999999999999999763         4679999998875 56


Q ss_pred             CceeEEEecccccccCChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++||+|++..++||++++..+|++
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~  111 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVR  111 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHH
Confidence            799999999999999999888765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.63  E-value=9.2e-16  Score=107.70  Aligned_cols=81  Identities=26%  Similarity=0.284  Sum_probs=68.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~~~~~sfD~V~~~~  202 (217)
                      |+.+|||||||+|.++..+++ .++.+++|+|+|++|++.+++++.+.+.. .+++++++|+ ..... .+.||+|++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECccccCccc-CCCCCEEEECC
Confidence            578999999999999999997 58889999999999999999999666665 7999999999 33333 35699999999


Q ss_pred             -ccccc
Q 027913          203 -VLCSV  207 (217)
Q Consensus       203 -~l~~~  207 (217)
                       +++++
T Consensus        79 ~~~~~~   84 (112)
T PF12847_consen   79 FTLHFL   84 (112)
T ss_dssp             GSGGGC
T ss_pred             Cccccc
Confidence             55544

...

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.62  E-value=3.1e-15  Score=120.27  Aligned_cols=96  Identities=15%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      .....++..+. .++.+|||||||+|.++..+++ .++.+++|+|+|+.|++.++++.       .++.++.+|+..+. 
T Consensus        18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~~~~-   89 (258)
T PRK01683         18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIASWQ-   89 (258)
T ss_pred             cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchhccC-
Confidence            34555666655 5678999999999999999886 35679999999999999999874       46789999998775 


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|+++.+++|++|+..+|++
T Consensus        90 ~~~~fD~v~~~~~l~~~~d~~~~l~~  115 (258)
T PRK01683         90 PPQALDLIFANASLQWLPDHLELFPR  115 (258)
T ss_pred             CCCCccEEEEccChhhCCCHHHHHHH
Confidence            45699999999999999999888765

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.61  E-value=3e-15  Score=115.67  Aligned_cols=87  Identities=23%  Similarity=0.268  Sum_probs=74.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.++++....++  .++++.+.|+..++++ ++||+|+++.++
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~-~g~~V~gvD~S~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~~~~-~~fD~I~~~~~~  105 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAA-NGFDVTAWDKNPMSIANLERIKAAENL--DNLHTAVVDLNNLTFD-GEYDFILSTVVL  105 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHcCC--CcceEEecChhhCCcC-CCcCEEEEecch
Confidence            678999999999999999985 467999999999999999999988887  4789999999888774 679999999999


Q ss_pred             cccCC--hhhhhc
Q 027913          205 CSVKD--VDMTLQ  215 (217)
Q Consensus       205 ~~~~d--~~~~L~  215 (217)
                      ||++.  ...+++
T Consensus       106 ~~~~~~~~~~~l~  118 (197)
T PRK11207        106 MFLEAKTIPGLIA  118 (197)
T ss_pred             hhCCHHHHHHHHH
Confidence            98863  344443

>TIGR00740 methyltransferase, putative

Probab=99.60  E-value=6.9e-15  Score=117.02  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhhC---CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+.+....++.+|||||||+|.++..+++.   ++.+++|+|+|++|++.|++++...+.. .+++++++|+..++++ 
T Consensus        44 ~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-  121 (239)
T TIGR00740        44 GMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-IPVEILCNDIRHVEIK-  121 (239)
T ss_pred             HHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-CCeEEEECChhhCCCC-
Confidence            3344444357789999999999999888763   5789999999999999999998776543 4789999999998865 


Q ss_pred             CceeEEEecccccccCC--hhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKD--VDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d--~~~~L~e  216 (217)
                       .+|+|++.+++||+++  +..+|++
T Consensus       122 -~~d~v~~~~~l~~~~~~~~~~~l~~  146 (239)
T TIGR00740       122 -NASMVILNFTLQFLPPEDRIALLTK  146 (239)
T ss_pred             -CCCEEeeecchhhCCHHHHHHHHHH
Confidence             4899999999999964  3445543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.60  E-value=4e-15  Score=119.94  Aligned_cols=98  Identities=19%  Similarity=0.278  Sum_probs=82.2

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...++..+. .++.+|||||||+|..+..+++..+.+|+|+|+|+.|++.++++... .   .++.++.+|+...|++++
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-~---~~i~~~~~D~~~~~~~~~  116 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-K---NKIEFEANDILKKDFPEN  116 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-C---CceEEEECCcccCCCCCC
Confidence            344566665 57889999999999999988765577999999999999999988643 1   579999999999999889


Q ss_pred             ceeEEEecccccccC--ChhhhhcC
Q 027913          194 SVDAVVGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~--d~~~~L~e  216 (217)
                      +||+|++..+++|++  ++..+|++
T Consensus       117 ~FD~V~s~~~l~h~~~~d~~~~l~~  141 (263)
T PTZ00098        117 TFDMIYSRDAILHLSYADKKKLFEK  141 (263)
T ss_pred             CeEEEEEhhhHHhCCHHHHHHHHHH
Confidence            999999999999986  67777654

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.59  E-value=6.6e-15  Score=121.75  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.++.+|++.+|+ +++||+|++..+
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~-~~i~~~~~d~e~lp~-~~~FD~V~s~~v  198 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGND-QRAHLLPLGIEQLPA-LKAFDTVFSMGV  198 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCC-CCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence            367899999999999999998655557999999999997655443332222 479999999999998 789999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|+.++..+|++
T Consensus       199 l~H~~dp~~~L~~  211 (322)
T PRK15068        199 LYHRRSPLDHLKQ  211 (322)
T ss_pred             hhccCCHHHHHHH
Confidence            9999999988875

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.59  E-value=6e-15  Score=128.44  Aligned_cols=98  Identities=24%  Similarity=0.348  Sum_probs=83.2

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .+++.+. .++.+|||||||+|..+..+++..+.+++|+|+|+.|++.|+++.....   .++.|+++|+...++++++|
T Consensus       257 ~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~---~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        257 EFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK---CSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC---CceEEEEcCcccCCCCCCCE
Confidence            3444443 4678999999999999988887667899999999999999998865333   47899999999988888899


Q ss_pred             eEEEecccccccCChhhhhcCC
Q 027913          196 DAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      |+|++..+++|++++..+|+++
T Consensus       334 D~I~s~~~l~h~~d~~~~l~~~  355 (475)
T PLN02336        334 DVIYSRDTILHIQDKPALFRSF  355 (475)
T ss_pred             EEEEECCcccccCCHHHHHHHH
Confidence            9999999999999999988763

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.58  E-value=2.8e-15  Score=103.52  Aligned_cols=79  Identities=29%  Similarity=0.406  Sum_probs=65.6

Q ss_pred             EEEECCcCCcchHhhhhCC----CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc-c
Q 027913          129 VLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-V  203 (217)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~  203 (217)
                      |||+|||+|..+..+.+..    ..+++|+|+|++|++.++++....+.   +++|+++|+.++++.+++||+|++.. +
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~   77 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP---KVRFVQADARDLPFSDGKFDLVVCSGLS   77 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC---ceEEEECCHhHCcccCCCeeEEEEcCCc
Confidence            7999999999999988642    37999999999999999999988764   78999999999998888999999955 5


Q ss_pred             ccccCCh
Q 027913          204 LCSVKDV  210 (217)
Q Consensus       204 l~~~~d~  210 (217)
                      ++|+++.
T Consensus        78 ~~~~~~~   84 (101)
T PF13649_consen   78 LHHLSPE   84 (101)
T ss_dssp             GGGSSHH
T ss_pred             cCCCCHH
Confidence            9998753

>PRK06202 hypothetical protein; Provisional

Probab=99.57  E-value=8e-15  Score=116.14  Aligned_cols=88  Identities=22%  Similarity=0.341  Sum_probs=71.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++     .++.+++|+|+|++|++.|+++...     .++.+.+.+...++.++++||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----PGVTFRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----CCCeEEEEecccccccCCCccEE
Confidence            3677999999999998887764     2346899999999999999987543     24567777777777777899999


Q ss_pred             EecccccccCChh--hhhcC
Q 027913          199 VGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       199 ~~~~~l~~~~d~~--~~L~e  216 (217)
                      +++++|||+++++  .+|+|
T Consensus       134 ~~~~~lhh~~d~~~~~~l~~  153 (232)
T PRK06202        134 TSNHFLHHLDDAEVVRLLAD  153 (232)
T ss_pred             EECCeeecCChHHHHHHHHH
Confidence            9999999999853  45654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.56  E-value=3.4e-15  Score=116.54  Aligned_cols=86  Identities=27%  Similarity=0.293  Sum_probs=70.8

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCC----CeEEEecccccccCCCCceeEEEec
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      +++|||+|||+|.++..|+ ..|.+|+|||+++.|++.|++.....-....    ++++.+.|++.+.   +.||+|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLA-rlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLA-RLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhH-hhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence            4789999999999999998 6679999999999999999999433222112    3677888888774   459999999


Q ss_pred             ccccccCChhhhhc
Q 027913          202 LVLCSVKDVDMTLQ  215 (217)
Q Consensus       202 ~~l~~~~d~~~~L~  215 (217)
                      .+++|+.||..++.
T Consensus       166 evleHV~dp~~~l~  179 (282)
T KOG1270|consen  166 EVLEHVKDPQEFLN  179 (282)
T ss_pred             HHHHHHhCHHHHHH
Confidence            99999999998764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.56  E-value=2.2e-14  Score=116.29  Aligned_cols=91  Identities=31%  Similarity=0.393  Sum_probs=79.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|..+..+++.  ...+++|+|+++.|++.|+++....++  .+++++.+|++.+++++++||+|++.
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~--~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY--TNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC--CCEEEEEcchhhCCCCCCceeEEEEc
Confidence            37889999999999877766653  345799999999999999999888777  58999999999999888899999999


Q ss_pred             ccccccCChhhhhcC
Q 027913          202 LVLCSVKDVDMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e  216 (217)
                      .+++++++...+|++
T Consensus       154 ~v~~~~~d~~~~l~~  168 (272)
T PRK11873        154 CVINLSPDKERVFKE  168 (272)
T ss_pred             CcccCCCCHHHHHHH
Confidence            999999998888765

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.55  E-value=6.8e-15  Score=110.79  Aligned_cols=85  Identities=24%  Similarity=0.308  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~  201 (217)
                      .++.+|||+|||.|.++.++.+..+.+..|+|++++.+..+.++    |     +.++++|++.- + |++++||.|+.+
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G-----v~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G-----VSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C-----CCEEECCHHHhHhhCCCCCccEEehH
Confidence            48899999999999999999888889999999999998888864    4     46999999763 3 899999999999


Q ss_pred             ccccccCChhhhhcCC
Q 027913          202 LVLCSVKDVDMTLQAP  217 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e~  217 (217)
                      .+|.++.+|+.+|+|+
T Consensus        83 qtLQ~~~~P~~vL~Em   98 (193)
T PF07021_consen   83 QTLQAVRRPDEVLEEM   98 (193)
T ss_pred             hHHHhHhHHHHHHHHH
Confidence            9999999999999874

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.54  E-value=1.6e-14  Score=111.44  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c-cCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I-PVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l-~~~~~sfD~V~~~~  202 (217)
                      ++.+|||||||+|.++..+++..+..++|+|+++++++.++++         +++++++|+.. + ++++++||+|+++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~---------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~   83 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR---------GVNVIQGDLDEGLEAFPDKSFDYVILSQ   83 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc---------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence            6779999999999999888766667899999999999988642         45788899876 4 36778999999999


Q ss_pred             cccccCChhhhhcC
Q 027913          203 VLCSVKDVDMTLQA  216 (217)
Q Consensus       203 ~l~~~~d~~~~L~e  216 (217)
                      +++|++++..+|+|
T Consensus        84 ~l~~~~d~~~~l~e   97 (194)
T TIGR02081        84 TLQATRNPEEILDE   97 (194)
T ss_pred             HhHcCcCHHHHHHH
Confidence            99999999998876

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00452 methyltransferase, putative

Probab=99.54  E-value=3.3e-14  Score=116.65  Aligned_cols=97  Identities=16%  Similarity=0.138  Sum_probs=75.3

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      ++..+. .++++|||||||+|.++..++......|+|+|+|+.|+..++......+.. .++.+...+++.+|.. .+||
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~-~~v~~~~~~ie~lp~~-~~FD  190 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND-KRAILEPLGIEQLHEL-YAFD  190 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC-CCeEEEECCHHHCCCC-CCcC
Confidence            344433 478899999999999988887654457999999999997754432222211 4788999999998854 5899


Q ss_pred             EEEecccccccCChhhhhcC
Q 027913          197 AVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +|++..+++|++++..+|++
T Consensus       191 ~V~s~gvL~H~~dp~~~L~e  210 (314)
T TIGR00452       191 TVFSMGVLYHRKSPLEHLKQ  210 (314)
T ss_pred             EEEEcchhhccCCHHHHHHH
Confidence            99999999999999988875

Known examples to date are restricted to the proteobacteria.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.54  E-value=2.6e-14  Score=118.18  Aligned_cols=89  Identities=17%  Similarity=0.151  Sum_probs=77.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++. ++.+++++|+|++|++.|+++...     .+++++.+|++.+++++++||+|++..
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-----~~i~~i~gD~e~lp~~~~sFDvVIs~~  186 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-----KECKIIEGDAEDLPFPTDYADRYVSAG  186 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-----cCCeEEeccHHhCCCCCCceeEEEEcC
Confidence            36789999999999988888753 457899999999999999987532     467899999999999889999999999


Q ss_pred             cccccCChhhhhcCC
Q 027913          203 VLCSVKDVDMTLQAP  217 (217)
Q Consensus       203 ~l~~~~d~~~~L~e~  217 (217)
                      +++++++++.+|+|+
T Consensus       187 ~L~~~~d~~~~L~e~  201 (340)
T PLN02490        187 SIEYWPDPQRGIKEA  201 (340)
T ss_pred             hhhhCCCHHHHHHHH
Confidence            999999999888763

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.54  E-value=8.4e-14  Score=109.36  Aligned_cols=80  Identities=28%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++ .+.+++|+|+|++|+..|++++...+.. .++.|.++|+..++   ++||+|++..++
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~---~~fD~ii~~~~l  129 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAK-RGAIVKAVDISEQMVQMARNRAQGRDVA-GNVEFEVNDLLSLC---GEFDIVVCMDVL  129 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChhhCC---CCcCEEEEhhHH
Confidence            678999999999999999985 4668999999999999999998776653 47899999998875   789999999999


Q ss_pred             cccCC
Q 027913          205 CSVKD  209 (217)
Q Consensus       205 ~~~~d  209 (217)
                      +|++.
T Consensus       130 ~~~~~  134 (219)
T TIGR02021       130 IHYPA  134 (219)
T ss_pred             HhCCH
Confidence            99864

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08317 hypothetical protein; Provisional

Probab=99.52  E-value=7.5e-14  Score=110.46  Aligned_cols=100  Identities=28%  Similarity=0.487  Sum_probs=82.4

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      +...+++.+. .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.++++.....   .++.++.+|+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~   83 (241)
T PRK08317          7 YRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG---PNVEFVRGDADGLPF   83 (241)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC---CceEEEecccccCCC
Confidence            3344455544 57789999999999999988864  35689999999999999998833222   579999999999888


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++..+++|++++..++++
T Consensus        84 ~~~~~D~v~~~~~~~~~~~~~~~l~~  109 (241)
T PRK08317         84 PDGSFDAVRSDRVLQHLEDPARALAE  109 (241)
T ss_pred             CCCCceEEEEechhhccCCHHHHHHH
Confidence            88999999999999999999888765

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.52  E-value=4.5e-14  Score=108.98  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++.++++ .+.+|+|+|+|+.|++.++++....++   ++.+.+.|+...+++ ++||+|+++.++
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~-~~fD~I~~~~~~  104 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALN-EDYDFIFSTVVF  104 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhcccc-CCCCEEEEeccc
Confidence            678999999999999999985 467999999999999999998887775   377888888776664 579999999999


Q ss_pred             cccCC
Q 027913          205 CSVKD  209 (217)
Q Consensus       205 ~~~~d  209 (217)
                      ++++.
T Consensus       105 ~~~~~  109 (195)
T TIGR00477       105 MFLQA  109 (195)
T ss_pred             ccCCH
Confidence            99853

Part of a tellurite-reducing operon tehA and tehB

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.52  E-value=8.2e-14  Score=110.34  Aligned_cols=86  Identities=27%  Similarity=0.357  Sum_probs=75.0

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .+.+|||||||+|.++..+++ .+..+++++|+++.+++.++++..      .++.++.+|++..++++++||+|++..+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~------~~~~~~~~d~~~~~~~~~~fD~vi~~~~  107 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS------ENVQFICGDAEKLPLEDSSFDLIVSNLA  107 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC------CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence            457999999999999988886 345679999999999999988753      3678999999999988899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|+.++..+|++
T Consensus       108 l~~~~~~~~~l~~  120 (240)
T TIGR02072       108 LQWCDDLSQALSE  120 (240)
T ss_pred             hhhccCHHHHHHH
Confidence            9999999888764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.51  E-value=3.8e-14  Score=111.62  Aligned_cols=88  Identities=23%  Similarity=0.297  Sum_probs=77.0

Q ss_pred             CeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~  205 (217)
                      ++|||||||+|.++..+++. ++.+++|+|+|+++++.+++++...++. .++.++..|+...+++ ++||+|++..+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            47999999999999988864 3578999999999999999999888876 6899999999777665 5899999999999


Q ss_pred             ccCChhhhhcC
Q 027913          206 SVKDVDMTLQA  216 (217)
Q Consensus       206 ~~~d~~~~L~e  216 (217)
                      |++++..+|++
T Consensus        79 ~~~~~~~~l~~   89 (224)
T smart00828       79 HIKDKMDLFSN   89 (224)
T ss_pred             hCCCHHHHHHH
Confidence            99998887764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=1.4e-15  Score=104.52  Aligned_cols=85  Identities=29%  Similarity=0.327  Sum_probs=56.0

Q ss_pred             EEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecccccc
Q 027913          130 LEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLVLCS  206 (217)
Q Consensus       130 LDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~~l~~  206 (217)
                      ||||||+|.++..+.+ .+..+++|+|+|+.|++.+++++.+...  .+...+..+..+..  ...++||+|++..++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~   78 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN--DNFERLRFDVLDLFDYDPPESFDLVVASNVLHH   78 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--cceeEEEeecCChhhcccccccceehhhhhHhh
Confidence            7999999999999886 4677999999999999999999888764  34455555544432  12259999999999999


Q ss_pred             cCChhhhhcC
Q 027913          207 VKDVDMTLQA  216 (217)
Q Consensus       207 ~~d~~~~L~e  216 (217)
                      ++++..+|+.
T Consensus        79 l~~~~~~l~~   88 (99)
T PF08242_consen   79 LEDIEAVLRN   88 (99)
T ss_dssp             -S-HHHHHHH
T ss_pred             hhhHHHHHHH
Confidence            9999888764

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.50  E-value=2.8e-13  Score=107.37  Aligned_cols=101  Identities=30%  Similarity=0.374  Sum_probs=83.3

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      ...++..+. .++.+|||||||+|.++..++...  ..+++++|+++.+++.+++++...++. .++.++.+|+..++++
T Consensus        40 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-GNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-cCeEEEecccccCCCC
Confidence            334444443 357899999999999999888644  479999999999999999998665543 5789999999998877


Q ss_pred             CCceeEEEecccccccCChhhhhcC
Q 027913          192 DASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      .++||+|++.+++++++++...|++
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~  143 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALRE  143 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHH
Confidence            7899999999999999998887754

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.50  E-value=1.7e-13  Score=108.23  Aligned_cols=81  Identities=26%  Similarity=0.221  Sum_probs=68.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++. +..|+|+|+|+.|++.|+++....+.. .++.+..+|+.   ..+++||+|++..++
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~---~~~~~fD~v~~~~~l  137 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLA-GNITFEVGDLE---SLLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCc-cCcEEEEcCch---hccCCcCEEEEcchh
Confidence            6789999999999999998854 567999999999999999998877654 47899999943   345789999999999


Q ss_pred             cccCCh
Q 027913          205 CSVKDV  210 (217)
Q Consensus       205 ~~~~d~  210 (217)
                      +|++++
T Consensus       138 ~~~~~~  143 (230)
T PRK07580        138 IHYPQE  143 (230)
T ss_pred             hcCCHH
Confidence            998754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.50  E-value=1.9e-13  Score=104.07  Aligned_cols=81  Identities=26%  Similarity=0.291  Sum_probs=67.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.++||+|||.|+.+.+|+ ..|..|+++|.|+..++.+++.+.+.++   .++..+.|++...++ +.||+|++..++
T Consensus        30 ~~g~~LDlgcG~GRNalyLA-~~G~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~-~~yD~I~st~v~  104 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLA-SQGFDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFP-EEYDFIVSTVVF  104 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHH-HTT-EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-T-TTEEEEEEESSG
T ss_pred             CCCcEEEcCCCCcHHHHHHH-HCCCeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhcccc-CCcCEEEEEEEe
Confidence            78899999999999999998 5688999999999999999999988886   599999999998875 689999999999


Q ss_pred             cccCCh
Q 027913          205 CSVKDV  210 (217)
Q Consensus       205 ~~~~d~  210 (217)
                      +|++..
T Consensus       105 ~fL~~~  110 (192)
T PF03848_consen  105 MFLQRE  110 (192)
T ss_dssp             GGS-GG
T ss_pred             ccCCHH
Confidence            998643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.50  E-value=2.2e-13  Score=104.12  Aligned_cols=75  Identities=23%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ++.+|||||||+|..+..++. .++.+|+++|+++.|++.|+++....++  .+++++.+|+.+++. +++||+|++..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l--~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL--KNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC--CCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            578999999999999888875 5678999999999999999999999887  469999999999876 67999999865

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.49  E-value=2.2e-14  Score=121.20  Aligned_cols=102  Identities=22%  Similarity=0.269  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027913          106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (217)
Q Consensus       106 ~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d  184 (217)
                      .+++........+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|++|++.|+++..  ++   ++++...|
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l---~v~~~~~D  221 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL---PVEIRLQD  221 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC---eEEEEECc
Confidence            345555566666777776 6788999999999999999987667899999999999999999873  32   47888888


Q ss_pred             cccccCCCCceeEEEecccccccCC--hhhhhc
Q 027913          185 GEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQ  215 (217)
Q Consensus       185 ~~~l~~~~~sfD~V~~~~~l~~~~d--~~~~L~  215 (217)
                      ...+   +++||.|++..+++|+.+  +..+++
T Consensus       222 ~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~  251 (383)
T PRK11705        222 YRDL---NGQFDRIVSVGMFEHVGPKNYRTYFE  251 (383)
T ss_pred             hhhc---CCCCCEEEEeCchhhCChHHHHHHHH
Confidence            8766   478999999999999854  345444

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.49  E-value=2.9e-14  Score=106.16  Aligned_cols=80  Identities=31%  Similarity=0.392  Sum_probs=66.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||.|.++..+++. +.+++|+|+++.+++.            .++.....+....+.++++||+|+++.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fD~i~~~~~   87 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK------------RNVVFDNFDAQDPPFPDGSFDLIICNDV   87 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH------------TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh------------hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence            37889999999999999999744 5599999999999988            1334555555566667889999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      |+|++|+..+|++
T Consensus        88 l~~~~d~~~~l~~  100 (161)
T PF13489_consen   88 LEHLPDPEEFLKE  100 (161)
T ss_dssp             GGGSSHHHHHHHH
T ss_pred             HhhcccHHHHHHH
Confidence            9999999988864

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=1.4e-13  Score=112.30  Aligned_cols=79  Identities=27%  Similarity=0.296  Sum_probs=70.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++.++++ .+.+|+|+|+|+.+++.+++++...++   ++++...|+...++ +++||+|++..++
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl  194 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLAL-LGFDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASI-QEEYDFILSTVVL  194 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccc-cCCccEEEEcchh
Confidence            567999999999999999985 467999999999999999999988775   68899999887765 5789999999999


Q ss_pred             cccC
Q 027913          205 CSVK  208 (217)
Q Consensus       205 ~~~~  208 (217)
                      +|++
T Consensus       195 ~~l~  198 (287)
T PRK12335        195 MFLN  198 (287)
T ss_pred             hhCC
Confidence            9986

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.46  E-value=1.3e-13  Score=104.76  Aligned_cols=95  Identities=19%  Similarity=0.248  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ..-...++.... ....+|.|+|||+|..+..+++ -++..++|+|-|++|++.|+++.       .+++|..+|+..+.
T Consensus        16 tRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-------p~~~f~~aDl~~w~   88 (257)
T COG4106          16 TRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-------PDATFEEADLRTWK   88 (257)
T ss_pred             cCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-------CCCceecccHhhcC
Confidence            344445566655 5788999999999999999986 67889999999999999998875       68899999999984


Q ss_pred             CCCCceeEEEecccccccCChhhhh
Q 027913          190 VSDASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                       ++..+|+|+++.+|++++|-...|
T Consensus        89 -p~~~~dllfaNAvlqWlpdH~~ll  112 (257)
T COG4106          89 -PEQPTDLLFANAVLQWLPDHPELL  112 (257)
T ss_pred             -CCCccchhhhhhhhhhccccHHHH
Confidence             567899999999999999866554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.46  E-value=6.1e-13  Score=101.34  Aligned_cols=82  Identities=21%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||||||+|.++..++. .+..+|+|+|++++|++.++++.++.++  .+++++++|+++++ .+++||+|++.. 
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~--~~i~~i~~d~~~~~-~~~~fD~I~s~~-  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL--NNVEIVNGRAEDFQ-HEEQFDVITSRA-  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC--CCeEEEecchhhcc-ccCCccEEEehh-
Confidence            588999999999999888775 4457899999999999999999988887  47999999999875 357899999876 


Q ss_pred             ccccCCh
Q 027913          204 LCSVKDV  210 (217)
Q Consensus       204 l~~~~d~  210 (217)
                      ++++++.
T Consensus       118 ~~~~~~~  124 (181)
T TIGR00138       118 LASLNVL  124 (181)
T ss_pred             hhCHHHH
Confidence            5555443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.45  E-value=5.5e-13  Score=109.61  Aligned_cols=82  Identities=24%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC---CCCCeEEEecccccccCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      ++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.+++++...+.   ...++.|.+.|++.+   +++||+|++.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~-~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~  219 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLAL-EGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCL  219 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEc
Confidence            578999999999999999985 467999999999999999999876521   114678999998765   4789999999


Q ss_pred             ccccccCCh
Q 027913          202 LVLCSVKDV  210 (217)
Q Consensus       202 ~~l~~~~d~  210 (217)
                      .+++|+++.
T Consensus       220 ~vL~H~p~~  228 (315)
T PLN02585        220 DVLIHYPQD  228 (315)
T ss_pred             CEEEecCHH
Confidence            999998764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.45  E-value=1.2e-12  Score=102.71  Aligned_cols=99  Identities=32%  Similarity=0.422  Sum_probs=81.3

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      +...+++.+. .++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++..   .. .++.++.+|+.++++
T Consensus        27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~-~~i~~~~~d~~~~~~  102 (223)
T TIGR01934        27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LP-LNIEFIQADAEALPF  102 (223)
T ss_pred             HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cC-CCceEEecchhcCCC
Confidence            3334444443 4688999999999999998886544  489999999999999998875   21 578999999999888


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++.+++++++++..+|++
T Consensus       103 ~~~~~D~i~~~~~~~~~~~~~~~l~~  128 (223)
T TIGR01934       103 EDNSFDAVTIAFGLRNVTDIQKALRE  128 (223)
T ss_pred             CCCcEEEEEEeeeeCCcccHHHHHHH
Confidence            77899999999999999999887764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.45  E-value=1.1e-12  Score=101.91  Aligned_cols=91  Identities=19%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||||||+|..+..+++.  ...+|+++|+++++++.+++++...++. .+++++.+|+.......++
T Consensus        64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-GVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEECCcccCCccCCC
Confidence            444443 46789999999999999888753  2468999999999999999999888764 4689999999876445579


Q ss_pred             eeEEEecccccccCC
Q 027913          195 VDAVVGTLVLCSVKD  209 (217)
Q Consensus       195 fD~V~~~~~l~~~~d  209 (217)
                      ||+|++..+++++++
T Consensus       143 fD~Ii~~~~~~~~~~  157 (205)
T PRK13944        143 FDAIIVTAAASTIPS  157 (205)
T ss_pred             ccEEEEccCcchhhH
Confidence            999999999988864

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.44  E-value=5.9e-13  Score=100.59  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=62.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ..-.++||+|||.|.++..|+ ..+.+++++|+|+..++.|+++....    ++|+|+++|+... +++++||+|+++.+
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA-~rCd~LlavDis~~Al~~Ar~Rl~~~----~~V~~~~~dvp~~-~P~~~FDLIV~SEV  115 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLA-PRCDRLLAVDISPRALARARERLAGL----PHVEWIQADVPEF-WPEGRFDLIVLSEV  115 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHG-GGEEEEEEEES-HHHHHHHHHHTTT-----SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred             cccceeEecCCCccHHHHHHH-HhhCceEEEeCCHHHHHHHHHhcCCC----CCeEEEECcCCCC-CCCCCeeEEEEehH
Confidence            455789999999999999998 44678999999999999999998543    5899999999775 57799999999999


Q ss_pred             ccccCCh
Q 027913          204 LCSVKDV  210 (217)
Q Consensus       204 l~~~~d~  210 (217)
                      ++++.+.
T Consensus       116 lYYL~~~  122 (201)
T PF05401_consen  116 LYYLDDA  122 (201)
T ss_dssp             GGGSSSH
T ss_pred             hHcCCCH
Confidence            9999864

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.43  E-value=5.4e-13  Score=103.49  Aligned_cols=83  Identities=25%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             hcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-cccc--CCCCceeE
Q 027913          122 LRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIP--VSDASVDA  197 (217)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~--~~~~sfD~  197 (217)
                      +..++.+|||||||+|.++..+++ .++.+++|+|+|++|++.+++++...++  .+++++++|+ +.++  +++++||+
T Consensus        37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~--~~v~~~~~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL--TNLRLLCGDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC--CCEEEEecCHHHHHHHHcCccccce
Confidence            334677999999999999999876 3557899999999999999999988776  5899999999 7776  77889999


Q ss_pred             EEecccccc
Q 027913          198 VVGTLVLCS  206 (217)
Q Consensus       198 V~~~~~l~~  206 (217)
                      |++.+...+
T Consensus       115 V~~~~~~p~  123 (202)
T PRK00121        115 IYLNFPDPW  123 (202)
T ss_pred             EEEECCCCC
Confidence            998776543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.42  E-value=2.1e-12  Score=100.87  Aligned_cols=89  Identities=20%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||||||+|+++..+++.  ...+|+++|+++++++.+++++...++  .+++++.+|......+.+.
T Consensus        68 ~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~--~~v~~~~gd~~~~~~~~~~  145 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY--DNVEVIVGDGTLGYEENAP  145 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCcCCC
Confidence            444443 47889999999999999888763  346899999999999999999988887  5899999998876556689


Q ss_pred             eeEEEecccccccC
Q 027913          195 VDAVVGTLVLCSVK  208 (217)
Q Consensus       195 fD~V~~~~~l~~~~  208 (217)
                      ||+|++...+++++
T Consensus       146 fD~I~~~~~~~~~~  159 (212)
T PRK13942        146 YDRIYVTAAGPDIP  159 (212)
T ss_pred             cCEEEECCCcccch
Confidence            99999988877764

>PRK06922 hypothetical protein; Provisional

Probab=99.42  E-value=1e-12  Score=115.56  Aligned_cols=80  Identities=18%  Similarity=0.356  Sum_probs=70.1

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      ++.+|||||||+|..+..+++ .++.+++|+|+|+.|++.|+++....+   .++.++++|...+|  +++++||+|+++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG---RSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            788999999999999888875 567899999999999999998876554   46889999998887  788999999999


Q ss_pred             cccccc
Q 027913          202 LVLCSV  207 (217)
Q Consensus       202 ~~l~~~  207 (217)
                      .++|++
T Consensus       495 ~vLH~L  500 (677)
T PRK06922        495 SILHEL  500 (677)
T ss_pred             hHHHhh
Confidence            999875

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.40  E-value=3.3e-12  Score=100.03  Aligned_cols=89  Identities=22%  Similarity=0.176  Sum_probs=73.2

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||||||+|.++..+++..  ..+|+++|+++++++.|++++.+.++  .+++++.+|+.........
T Consensus        69 ~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~--~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL--DNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC--CCeEEEECCcccCCcccCC
Confidence            334343 478899999999999998888632  34699999999999999999999887  5899999999776444568


Q ss_pred             eeEEEecccccccC
Q 027913          195 VDAVVGTLVLCSVK  208 (217)
Q Consensus       195 fD~V~~~~~l~~~~  208 (217)
                      ||+|++.....+++
T Consensus       147 fD~Ii~~~~~~~~~  160 (215)
T TIGR00080       147 YDRIYVTAAGPKIP  160 (215)
T ss_pred             CCEEEEcCCccccc
Confidence            99999988777765

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=3.5e-12  Score=102.38  Aligned_cols=90  Identities=22%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+++|||||||.|+++..++......|+|+|++...+-..+-...-.+.. ..+.++-.-++.+|. .+.||+|+|..+|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGVL  192 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGVL  192 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC-ccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence            89999999999999999998776678999999998765544332223321 233444457788886 6899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|..+|..+|++
T Consensus       193 YHrr~Pl~~L~~  204 (315)
T PF08003_consen  193 YHRRSPLDHLKQ  204 (315)
T ss_pred             hccCCHHHHHHH
Confidence            999999988864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.37  E-value=6.2e-12  Score=89.49  Aligned_cols=88  Identities=17%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~s  194 (217)
                      +++.+. .++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++  .+++++..|+.. ++....+
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV--SNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC--CceEEEeccccccChhhcCC
Confidence            444444 35679999999999999999874 457899999999999999999888776  478999998765 3333468


Q ss_pred             eeEEEeccccccc
Q 027913          195 VDAVVGTLVLCSV  207 (217)
Q Consensus       195 fD~V~~~~~l~~~  207 (217)
                      ||+|++.......
T Consensus        89 ~D~v~~~~~~~~~  101 (124)
T TIGR02469        89 PDRVFIGGSGGLL  101 (124)
T ss_pred             CCEEEECCcchhH
Confidence            9999997765543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.37  E-value=1.6e-12  Score=99.09  Aligned_cols=88  Identities=22%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhc---CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccc
Q 027913          113 GYKSQLFDNLR---GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAI  188 (217)
Q Consensus       113 ~~~~~i~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l  188 (217)
                      +...+.++.+.   ..+.-|||||||+|..+..+. ..++..+|+|+|+.|++.|.+.-.+ |      +++.+|+ +.+
T Consensus        35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e-g------dlil~DMG~Gl  106 (270)
T KOG1541|consen   35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE-G------DLILCDMGEGL  106 (270)
T ss_pred             HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh-c------CeeeeecCCCC
Confidence            33444455544   336789999999998887775 6679999999999999999974322 2      4777776 568


Q ss_pred             cCCCCceeEEEecccccccC
Q 027913          189 PVSDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       189 ~~~~~sfD~V~~~~~l~~~~  208 (217)
                      ||.+++||.+|++-++.++=
T Consensus       107 pfrpGtFDg~ISISAvQWLc  126 (270)
T KOG1541|consen  107 PFRPGTFDGVISISAVQWLC  126 (270)
T ss_pred             CCCCCccceEEEeeeeeeec
Confidence            99999999999988777653

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.36  E-value=6.2e-12  Score=98.91  Aligned_cols=89  Identities=24%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~  203 (217)
                      .+.+|||+|||+|.++..+++ .+..++++|+++.+++.+++++...+.  .++.+...|+.+++.. .++||+|++..+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLAR-LGANVTGIDASEENIEVAKLHAKKDPL--LKIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            578999999999999988875 355799999999999999998877664  3688999999887644 378999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|+.++..+|++
T Consensus       122 l~~~~~~~~~l~~  134 (224)
T TIGR01983       122 LEHVPDPQAFIRA  134 (224)
T ss_pred             HHhCCCHHHHHHH
Confidence            9999999887754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.35  E-value=3.7e-12  Score=100.90  Aligned_cols=89  Identities=25%  Similarity=0.305  Sum_probs=75.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++ .+.+++++|+++.+++.+++++...+.   ++.++..|+..++ ..++.||+|++..
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMAR-LGADVTGIDASEENIEVARLHALESGL---KIDYRQTTAEELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHH-cCCeEEEEcCCHHHHHHHHHHHHHcCC---ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence            3688999999999999988875 467899999999999999998876663   5788888888775 3457999999999


Q ss_pred             cccccCChhhhhcC
Q 027913          203 VLCSVKDVDMTLQA  216 (217)
Q Consensus       203 ~l~~~~d~~~~L~e  216 (217)
                      +++|++++..+|++
T Consensus       123 ~l~~~~~~~~~l~~  136 (233)
T PRK05134        123 MLEHVPDPASFVRA  136 (233)
T ss_pred             HhhccCCHHHHHHH
Confidence            99999998877653

>PLN03075 nicotianamine synthase; Provisional

Probab=99.35  E-value=9.8e-12  Score=100.59  Aligned_cols=91  Identities=18%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             CCCCeEEEECCcCCcchHh-hhh--CCCCeEEEecCCHHHHHHHHHHHHH-cCCCCCCeEEEecccccccCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKY-YAA--DTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~-l~~--~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~l~~~~~sfD~V~  199 (217)
                      .++++|+|||||.|.++.. +++  .++.+++|+|+++++++.|++.+.. .++. .+++|.++|+.+.+-..+.||+|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-KRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-CCcEEEECchhhcccccCCcCEEE
Confidence            3789999999998855433 222  4667899999999999999999964 6775 689999999988643347899999


Q ss_pred             eccccccc--CChhhhhcC
Q 027913          200 GTLVLCSV--KDVDMTLQA  216 (217)
Q Consensus       200 ~~~~l~~~--~d~~~~L~e  216 (217)
                      +. +++++  ++++++|+.
T Consensus       201 ~~-ALi~~dk~~k~~vL~~  218 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEH  218 (296)
T ss_pred             Ee-cccccccccHHHHHHH
Confidence            99 88888  577777653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.34  E-value=2.5e-12  Score=103.66  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             CCCeEEEECCcCCc----chHhhhhC------CCCeEEEecCCHHHHHHHHHHHHH----cC------------------
Q 027913          125 KAKKVLEIGIGTGP----NLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA----AG------------------  172 (217)
Q Consensus       125 ~~~~vLDiGcG~G~----~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~----~~------------------  172 (217)
                      ++.+|||+|||+|.    ++..+++.      .+.+++|+|+|+.|++.|++....    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            56799999999996    33334331      246899999999999999975310    01                  


Q ss_pred             ----CCCCCeEEEecccccccCCCCceeEEEecccccccCChh--hhhc
Q 027913          173 ----LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       173 ----~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~--~~L~  215 (217)
                          +. .++.|.+.|+...+++.++||+|+|.++|+|++++.  ++++
T Consensus       179 v~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~  226 (264)
T smart00138      179 VKPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLN  226 (264)
T ss_pred             EChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHH
Confidence                11 368999999999887788999999999999997543  4554

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.32  E-value=3.9e-12  Score=110.85  Aligned_cols=86  Identities=27%  Similarity=0.299  Sum_probs=70.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc--cccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~--~l~~~~~sfD~V~~~~  202 (217)
                      ++.+|||||||+|.++..+++. +.+++|+|+++.|++.+++...  ..  .++.++++|+.  .+++++++||+|++.+
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~--~~--~~i~~~~~d~~~~~~~~~~~~fD~I~~~~  111 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING--HY--KNVKFMCADVTSPDLNISDGSVDLIFSNW  111 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc--cC--CceEEEEecccccccCCCCCCEEEEehhh
Confidence            5679999999999999999854 5689999999999998765421  12  57899999996  4577888999999999


Q ss_pred             cccccCCh--hhhhc
Q 027913          203 VLCSVKDV--DMTLQ  215 (217)
Q Consensus       203 ~l~~~~d~--~~~L~  215 (217)
                      +++|+++.  ..+|+
T Consensus       112 ~l~~l~~~~~~~~l~  126 (475)
T PLN02336        112 LLMYLSDKEVENLAE  126 (475)
T ss_pred             hHHhCCHHHHHHHHH
Confidence            99999873  45554

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.32  E-value=5.1e-12  Score=97.42  Aligned_cols=81  Identities=27%  Similarity=0.258  Sum_probs=69.2

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~  200 (217)
                      ...+|||||||+|.++..+++ .+..+++|+|+++.+++.|++++...++  .+++++++|+..++   ++++++|.|++
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l--~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL--KNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC--CCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            566899999999999998886 5677999999999999999999988887  58999999998764   45679999998


Q ss_pred             ccccccc
Q 027913          201 TLVLCSV  207 (217)
Q Consensus       201 ~~~l~~~  207 (217)
                      ++...+.
T Consensus        94 ~~pdpw~  100 (194)
T TIGR00091        94 NFPDPWP  100 (194)
T ss_pred             ECCCcCC
Confidence            8765543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.29  E-value=7.2e-12  Score=97.80  Aligned_cols=85  Identities=18%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC----------CCCCCeEEEecccccccCC-CC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEAIPVS-DA  193 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~v~~~~~d~~~l~~~-~~  193 (217)
                      ++.+|||+|||.|..+.+|+ ..|.+|+|+|+|+.+++.+.+......          ....+++++++|+.+++.. .+
T Consensus        34 ~~~rvLd~GCG~G~da~~LA-~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLA-EQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHH-hCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            66899999999999999998 568899999999999998644221000          0014689999999888642 36


Q ss_pred             ceeEEEecccccccCCh
Q 027913          194 SVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~  210 (217)
                      .||.|+...+++|++..
T Consensus       113 ~fD~i~D~~~~~~l~~~  129 (213)
T TIGR03840       113 PVDAVYDRAALIALPEE  129 (213)
T ss_pred             CcCEEEechhhccCCHH
Confidence            79999999999999643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.29  E-value=4.1e-11  Score=88.93  Aligned_cols=80  Identities=25%  Similarity=0.305  Sum_probs=67.8

Q ss_pred             CeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913          127 KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~  205 (217)
                      .+|||+|||+|.++..|++. .....+|+|.|+..++.|+..++..++. ..++|.+.|+..-.+..++||+|+--.++.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC-cceeEEEeeccCCcccccceeEEeecCcee
Confidence            39999999999999999963 3345999999999999999999999985 459999999988777788999998765554


Q ss_pred             cc
Q 027913          206 SV  207 (217)
Q Consensus       206 ~~  207 (217)
                      -+
T Consensus       148 Ai  149 (227)
T KOG1271|consen  148 AI  149 (227)
T ss_pred             ee
Confidence            33

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.28  E-value=2.2e-11  Score=91.86  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=69.2

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++..  .  .+++++.+|+.++++++..|
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~--~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--A--DNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--C--CCEEEEECchhcCCccccCC
Confidence            3455554 46679999999999999999865 67899999999999999988743  2  58999999999998877789


Q ss_pred             eEEEeccccc
Q 027913          196 DAVVGTLVLC  205 (217)
Q Consensus       196 D~V~~~~~l~  205 (217)
                      |.|+++.-++
T Consensus        79 d~vi~n~Py~   88 (169)
T smart00650       79 YKVVGNLPYN   88 (169)
T ss_pred             CEEEECCCcc
Confidence            9999875443

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.27  E-value=1.7e-11  Score=86.53  Aligned_cols=80  Identities=21%  Similarity=0.300  Sum_probs=67.7

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEeccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTLV  203 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~~  203 (217)
                      |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++. .+++++++|+..+.  +++++||+|+++--
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCC-ceEEEEECchhhchhhccCceeEEEEECCC
Confidence            4689999999999998888644589999999999999999999988875 68999999998886  78899999999776


Q ss_pred             ccc
Q 027913          204 LCS  206 (217)
Q Consensus       204 l~~  206 (217)
                      +..
T Consensus        80 ~~~   82 (117)
T PF13659_consen   80 YGP   82 (117)
T ss_dssp             TTS
T ss_pred             Ccc
Confidence            654

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.27  E-value=4e-11  Score=91.91  Aligned_cols=86  Identities=19%  Similarity=0.223  Sum_probs=68.4

Q ss_pred             HHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +..+. .++.+|||||||+|.++..+++ .+..+++++|+++.+++.+++++...++  .+++++.+|.. .+++ ++||
T Consensus        24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~--~~i~~~~~d~~-~~~~-~~~D   99 (187)
T PRK08287         24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC--GNIDIIPGEAP-IELP-GKAD   99 (187)
T ss_pred             HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCeEEEecCch-hhcC-cCCC
Confidence            34443 4778999999999999998886 4457899999999999999999988776  47899999874 3343 5799


Q ss_pred             EEEecccccccC
Q 027913          197 AVVGTLVLCSVK  208 (217)
Q Consensus       197 ~V~~~~~l~~~~  208 (217)
                      +|++....+++.
T Consensus       100 ~v~~~~~~~~~~  111 (187)
T PRK08287        100 AIFIGGSGGNLT  111 (187)
T ss_pred             EEEECCCccCHH
Confidence            999987665543

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.27  E-value=4.3e-11  Score=91.06  Aligned_cols=79  Identities=20%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..++... .+++++|+++.|++.+++++...+.   +++++.+|....+  .++||+|+++..+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~   92 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG-KCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV--RGKFDVILFNPPY   92 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc--CCcccEEEECCCC
Confidence            67899999999999999888543 4899999999999999999987764   6889999986653  3589999999888


Q ss_pred             cccCC
Q 027913          205 CSVKD  209 (217)
Q Consensus       205 ~~~~d  209 (217)
                      ++.++
T Consensus        93 ~~~~~   97 (179)
T TIGR00537        93 LPLED   97 (179)
T ss_pred             CCCcc
Confidence            77754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.26  E-value=5.3e-11  Score=93.01  Aligned_cols=88  Identities=22%  Similarity=0.183  Sum_probs=70.7

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++. ..+++++|+++++++.+++++...++  .++.++.+|......+.++||
T Consensus        70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD  146 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGL--HNVSVRHGDGWKGWPAYAPFD  146 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCC--CceEEEECCcccCCCcCCCcC
Confidence            344443 47789999999999998877654 35899999999999999999988887  579999999765422347899


Q ss_pred             EEEecccccccC
Q 027913          197 AVVGTLVLCSVK  208 (217)
Q Consensus       197 ~V~~~~~l~~~~  208 (217)
                      +|++...+++++
T Consensus       147 ~I~~~~~~~~~~  158 (212)
T PRK00312        147 RILVTAAAPEIP  158 (212)
T ss_pred             EEEEccCchhhh
Confidence            999998887764

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.26  E-value=4e-11  Score=93.10  Aligned_cols=90  Identities=20%  Similarity=0.308  Sum_probs=69.2

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      .+++.+. .++.+|||||||+|+++..++.  .....|+++|..+.+++.|++++...++  .|+.++++|.....-..+
T Consensus        63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~--~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI--DNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT--HSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc--CceeEEEcchhhccccCC
Confidence            3455554 5899999999999999888875  3445799999999999999999999887  599999999876433457


Q ss_pred             ceeEEEecccccccC
Q 027913          194 SVDAVVGTLVLCSVK  208 (217)
Q Consensus       194 sfD~V~~~~~l~~~~  208 (217)
                      .||.|++......++
T Consensus       141 pfD~I~v~~a~~~ip  155 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIP  155 (209)
T ss_dssp             SEEEEEESSBBSS--
T ss_pred             CcCEEEEeeccchHH
Confidence            899999999888765

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.26  E-value=3e-11  Score=101.18  Aligned_cols=87  Identities=17%  Similarity=0.279  Sum_probs=72.6

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCC
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDA  193 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~  193 (217)
                      +++.+. ..+..+||||||+|.++..+++ .+...++|+|+++.++..+.+++...++  .|+.++++|+..+  .++++
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL--~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL--KNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHhhhhCCCC
Confidence            344443 3456899999999999999986 5678999999999999999999998888  5899999999765  47889


Q ss_pred             ceeEEEecccccc
Q 027913          194 SVDAVVGTLVLCS  206 (217)
Q Consensus       194 sfD~V~~~~~l~~  206 (217)
                      ++|.|++++...|
T Consensus       192 s~D~I~lnFPdPW  204 (390)
T PRK14121        192 SVEKIFVHFPVPW  204 (390)
T ss_pred             ceeEEEEeCCCCc
Confidence            9999998765544

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.25  E-value=6.1e-11  Score=94.78  Aligned_cols=86  Identities=26%  Similarity=0.348  Sum_probs=69.5

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .+++.+...+.+|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...++  .++.++.+|+.. ++++++|
T Consensus        79 ~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~~~~~~f  155 (251)
T TIGR03534        79 AALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL--DNVTFLQSDWFE-PLPGGKF  155 (251)
T ss_pred             HHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEECchhc-cCcCCce
Confidence            334444335569999999999999999863 466999999999999999999988887  479999999876 4567899


Q ss_pred             eEEEeccccc
Q 027913          196 DAVVGTLVLC  205 (217)
Q Consensus       196 D~V~~~~~l~  205 (217)
                      |+|+++..+.
T Consensus       156 D~Vi~npPy~  165 (251)
T TIGR03534       156 DLIVSNPPYI  165 (251)
T ss_pred             eEEEECCCCC
Confidence            9999865433

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.24  E-value=7.8e-11  Score=91.13  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             HHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCc
Q 027913          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDAS  194 (217)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~s  194 (217)
                      +..+. .++.+|||+|||+|.++..+++  ..+.+++++|+++.+++.+++++...++. .++.++.+|..+. +...+.
T Consensus        33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-~~v~~~~~d~~~~l~~~~~~  111 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-NNIVLIKGEAPEILFTINEK  111 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CCeEEEEechhhhHhhcCCC
Confidence            44444 5788999999999999888765  34568999999999999999999888753 5899999998764 333468


Q ss_pred             eeEEEecc
Q 027913          195 VDAVVGTL  202 (217)
Q Consensus       195 fD~V~~~~  202 (217)
                      ||+|++..
T Consensus       112 ~D~V~~~~  119 (198)
T PRK00377        112 FDRIFIGG  119 (198)
T ss_pred             CCEEEECC
Confidence            99999854

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.23  E-value=5.8e-11  Score=97.95  Aligned_cols=84  Identities=27%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|.++..+++..+  ..|+++|+++++++.|++++...++  .++.++.+|....+...++||+|++.
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~--~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI--ENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCChhhcccccCCccEEEEC
Confidence            4678999999999999988886433  3699999999999999999988887  58999999987765555789999998


Q ss_pred             ccccccCC
Q 027913          202 LVLCSVKD  209 (217)
Q Consensus       202 ~~l~~~~d  209 (217)
                      ..++++++
T Consensus       157 ~g~~~ip~  164 (322)
T PRK13943        157 VGVDEVPE  164 (322)
T ss_pred             CchHHhHH
Confidence            88777653

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=7.3e-11  Score=90.39  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .+++.+. .++.+|||||||+|+.+.-+++ ...+|+.+|..++..+.|+++++..|+  .|+.++++|...---+...|
T Consensus        63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~--~nV~v~~gDG~~G~~~~aPy  139 (209)
T COG2518          63 RMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGY--ENVTVRHGDGSKGWPEEAPY  139 (209)
T ss_pred             HHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCC--CceEEEECCcccCCCCCCCc
Confidence            3444554 5889999999999999988875 344899999999999999999999998  57999999987653344899


Q ss_pred             eEEEecccccccCC
Q 027913          196 DAVVGTLVLCSVKD  209 (217)
Q Consensus       196 D~V~~~~~l~~~~d  209 (217)
                      |.|+.+.....+|+
T Consensus       140 D~I~Vtaaa~~vP~  153 (209)
T COG2518         140 DRIIVTAAAPEVPE  153 (209)
T ss_pred             CEEEEeeccCCCCH
Confidence            99999999988875

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.23  E-value=4.8e-11  Score=93.46  Aligned_cols=82  Identities=21%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC-------------CCCeEEEecccccccC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-------------LTNFKFLQAVGEAIPV  190 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------~~~v~~~~~d~~~l~~  190 (217)
                      .++.+|||+|||.|..+.+|+ ..|.+|+|||+|+.+++.+.+.   .++.             ..++++.++|+.+++.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA-~~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLA-EQGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHH-hCCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCc
Confidence            356799999999999999998 5688999999999999987432   2211             1478999999998853


Q ss_pred             C-CCceeEEEecccccccCC
Q 027913          191 S-DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       191 ~-~~sfD~V~~~~~l~~~~d  209 (217)
                      . .+.||.|+...+++|++.
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~  131 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPE  131 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCH
Confidence            3 258999999999999964

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.22  E-value=6.5e-11  Score=97.56  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=76.2

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      +++.+. .++.+|||||||+|.++..+++ .+..+++++|. +.+++.+++++.+.++. ++++++.+|+.+.++++  +
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~-~rv~~~~~d~~~~~~~~--~  216 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYPE--A  216 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCcc-ceEEEEecCccCCCCCC--C
Confidence            344443 4668999999999999998886 46679999998 79999999999888875 68999999998766653  6


Q ss_pred             eEEEecccccccCCh--hhhhcC
Q 027913          196 DAVVGTLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       196 D~V~~~~~l~~~~d~--~~~L~e  216 (217)
                      |+|++..++|++++.  ..+|++
T Consensus       217 D~v~~~~~lh~~~~~~~~~il~~  239 (306)
T TIGR02716       217 DAVLFCRILYSANEQLSTIMCKK  239 (306)
T ss_pred             CEEEeEhhhhcCChHHHHHHHHH
Confidence            999999999988764  344543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.21  E-value=4.3e-12  Score=97.40  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-  188 (217)
                      ......+++.... ++-.++||+|||||.....+. ......+|+|+|++|+++|.++-...       ...++|+..+ 
T Consensus       110 vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR-~~a~~ltGvDiS~nMl~kA~eKg~YD-------~L~~Aea~~Fl  181 (287)
T COG4976         110 VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALR-DMADRLTGVDISENMLAKAHEKGLYD-------TLYVAEAVLFL  181 (287)
T ss_pred             cHHHHHHHHHhccCCccceeeecccCcCcccHhHH-HHHhhccCCchhHHHHHHHHhccchH-------HHHHHHHHHHh
Confidence            3455556666665 557899999999999988875 45567999999999999999873211       3455555533 


Q ss_pred             c-CCCCceeEEEecccccccCChhhhh
Q 027913          189 P-VSDASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       189 ~-~~~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                      + ..+..||+|++..||.++.+.+.++
T Consensus       182 ~~~~~er~DLi~AaDVl~YlG~Le~~~  208 (287)
T COG4976         182 EDLTQERFDLIVAADVLPYLGALEGLF  208 (287)
T ss_pred             hhccCCcccchhhhhHHHhhcchhhHH
Confidence            2 5668899999999999999887765

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.21  E-value=8.8e-11  Score=95.95  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=66.8

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      +++.+..++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+...+...  ..+++||+
T Consensus       152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~-~~~~~~~~~~~~--~~~~~fDl  228 (288)
T TIGR00406       152 WLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVS-DRLQVKLIYLEQ--PIEGKADV  228 (288)
T ss_pred             HHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-cceEEEeccccc--ccCCCceE
Confidence            344444578899999999999998887655568999999999999999999887764 456666666332  34578999


Q ss_pred             EEeccccccc
Q 027913          198 VVGTLVLCSV  207 (217)
Q Consensus       198 V~~~~~l~~~  207 (217)
                      |+++...+.+
T Consensus       229 Vvan~~~~~l  238 (288)
T TIGR00406       229 IVANILAEVI  238 (288)
T ss_pred             EEEecCHHHH
Confidence            9997765443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.20  E-value=3.3e-10  Score=85.52  Aligned_cols=81  Identities=26%  Similarity=0.283  Sum_probs=65.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      +..+|||+|||+|.++..+++. +..+++++|+++.+++.+++++...++.  +++++..|.... .++++||+|+++--
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~-~~~~~fD~Iv~NPP  107 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEA-LPDGKFDLIVSNPP  107 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTT-CCTTCEEEEEE---
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcc--cccccccccccc-ccccceeEEEEccc
Confidence            7889999999999999998864 4447999999999999999999999884  499999998654 34689999999876


Q ss_pred             ccccC
Q 027913          204 LCSVK  208 (217)
Q Consensus       204 l~~~~  208 (217)
                      ++.-.
T Consensus       108 ~~~~~  112 (170)
T PF05175_consen  108 FHAGG  112 (170)
T ss_dssp             SBTTS
T ss_pred             hhccc
Confidence            55443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.18  E-value=9.2e-11  Score=97.75  Aligned_cols=78  Identities=15%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ...+|||+|||+|.++..+++ .+..+++++|+|+.+++.+++++...++   ..+++..|+...  .++.||+|+++..
T Consensus       196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l---~~~~~~~D~~~~--~~~~fDlIvsNPP  270 (342)
T PRK09489        196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL---EGEVFASNVFSD--IKGRFDMIISNPP  270 (342)
T ss_pred             CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCEEEEcccccc--cCCCccEEEECCC
Confidence            456899999999999998886 3557899999999999999999988875   356777887543  2578999999998


Q ss_pred             cccc
Q 027913          204 LCSV  207 (217)
Q Consensus       204 l~~~  207 (217)
                      ||..
T Consensus       271 FH~g  274 (342)
T PRK09489        271 FHDG  274 (342)
T ss_pred             ccCC
Confidence            8863

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.18  E-value=2.1e-10  Score=93.49  Aligned_cols=75  Identities=20%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      ++.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.|++++...++. .++.++.+|+... +++++||+|+++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhc-cCCCCccEEEEC
Confidence            457999999999999999986 45679999999999999999999988875 5799999998542 345689999986

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.17  E-value=1.7e-10  Score=95.40  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~  201 (217)
                      ++.+|||+|||+|.++..+++ .+.+|+|+|+++.+++.|+++++..++  .+++|+++|+..+.. ..+.||+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~~av~~A~~n~~~~~l--~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISAEAIACAKQSAAELGL--TNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            578999999999999999985 457999999999999999999998887  589999999987642 33579999976

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.16  E-value=2.5e-10  Score=96.00  Aligned_cols=89  Identities=13%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. ..+.+|||+|||+|.++..+++ .+..+|+++|+|+.+++.+++++...+.. ..+++++..|.... +++++
T Consensus       220 lL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~  298 (378)
T PRK15001        220 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFR  298 (378)
T ss_pred             HHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCC
Confidence            444443 2346999999999999999886 56789999999999999999999776542 13788999887543 34568


Q ss_pred             eeEEEeccccccc
Q 027913          195 VDAVVGTLVLCSV  207 (217)
Q Consensus       195 fD~V~~~~~l~~~  207 (217)
                      ||+|+++--+|..
T Consensus       299 fDlIlsNPPfh~~  311 (378)
T PRK15001        299 FNAVLCNPPFHQQ  311 (378)
T ss_pred             EEEEEECcCcccC
Confidence            9999998777654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.15  E-value=2.7e-10  Score=96.22  Aligned_cols=84  Identities=19%  Similarity=0.209  Sum_probs=66.3

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CC
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SD  192 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~  192 (217)
                      ...+++.+. ++.+|||+|||+|.++..++. .++.+++++|+|+.|++.|++++...+.   ++.++++|+.+..+ ..
T Consensus       242 Ve~aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~---rV~fi~gDl~e~~l~~~  317 (423)
T PRK14966        242 VEAVLARLP-ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA---RVEFAHGSWFDTDMPSE  317 (423)
T ss_pred             HHHhhhccC-CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---cEEEEEcchhccccccC
Confidence            333333332 456999999999999988875 4677999999999999999999987763   78999999865433 24


Q ss_pred             CceeEEEecc
Q 027913          193 ASVDAVVGTL  202 (217)
Q Consensus       193 ~sfD~V~~~~  202 (217)
                      ++||+|+++-
T Consensus       318 ~~FDLIVSNP  327 (423)
T PRK14966        318 GKWDIIVSNP  327 (423)
T ss_pred             CCccEEEECC
Confidence            5899999965

>PRK14967 putative methyltransferase; Provisional

Probab=99.15  E-value=2.9e-10  Score=89.53  Aligned_cols=75  Identities=25%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..+++....+++++|+++.+++.+++++...++   ++.++.+|+... +++++||+|+++-
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~np  109 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARA-VEFRPFDVVVSNP  109 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhh-ccCCCeeEEEECC
Confidence            36789999999999999888865445899999999999999999887764   578899998764 4567899999974

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.15  E-value=1.3e-10  Score=91.49  Aligned_cols=81  Identities=19%  Similarity=0.251  Sum_probs=70.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      ...+|||||||+|.....+++. ...+++|||+.+.+.+.|++++...+|. .++.++++|+..+.  ..-.+||+|+|+
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE-ERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch-hceeEehhhHHHhhhcccccccCEEEeC
Confidence            5789999999999999999875 4489999999999999999999998887 89999999999885  444579999997


Q ss_pred             ccccc
Q 027913          202 LVLCS  206 (217)
Q Consensus       202 ~~l~~  206 (217)
                      --+.-
T Consensus       123 PPyf~  127 (248)
T COG4123         123 PPYFK  127 (248)
T ss_pred             CCCCC
Confidence            65443

>TIGR03438 probable methyltransferase

Probab=99.14  E-value=3.7e-10  Score=92.87  Aligned_cols=96  Identities=8%  Similarity=0.012  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-c
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-I  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l  188 (217)
                      ......+...+. ++.+|||+|||+|..+..+++..  +.+|+++|+|++|++.+++++...... .++.++++|+.. +
T Consensus        51 ~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~-~~v~~i~gD~~~~~  128 (301)
T TIGR03438        51 ERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQ-LEVHGICADFTQPL  128 (301)
T ss_pred             HHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCC-ceEEEEEEcccchh
Confidence            344444554443 56899999999999999888653  578999999999999999988654321 367889999976 3


Q ss_pred             cCCCC----ceeEEEecccccccCC
Q 027913          189 PVSDA----SVDAVVGTLVLCSVKD  209 (217)
Q Consensus       189 ~~~~~----sfD~V~~~~~l~~~~d  209 (217)
                      ++...    ...++++..++++++.
T Consensus       129 ~~~~~~~~~~~~~~~~gs~~~~~~~  153 (301)
T TIGR03438       129 ALPPEPAAGRRLGFFPGSTIGNFTP  153 (301)
T ss_pred             hhhcccccCCeEEEEecccccCCCH
Confidence            44332    2344555567888864

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.14  E-value=1.9e-10  Score=89.67  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~  193 (217)
                      .++.+|||||||+|.++..+++.  ....|+|||+++ |          ..+  .++.++++|+...+        +.++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~--~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI--VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC--CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            57789999999999999988864  335899999998 2          112  46899999998853        6678


Q ss_pred             ceeEEEecccccccCC
Q 027913          194 SVDAVVGTLVLCSVKD  209 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d  209 (217)
                      +||+|++..++++..+
T Consensus       117 ~~D~V~S~~~~~~~g~  132 (209)
T PRK11188        117 KVQVVMSDMAPNMSGT  132 (209)
T ss_pred             CCCEEecCCCCccCCC
Confidence            9999999887776544

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.13  E-value=4e-10  Score=92.72  Aligned_cols=73  Identities=19%  Similarity=0.175  Sum_probs=62.8

Q ss_pred             CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. .+++++.+|+... +++++||+|+++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE-DRVTLIESDLFAA-LPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CcEEEEECchhhh-CCCCCccEEEEC
Confidence            7899999999999998886 45679999999999999999999888874 5799999998542 345689999986

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.13  E-value=3.3e-10  Score=94.28  Aligned_cols=76  Identities=26%  Similarity=0.280  Sum_probs=67.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..++ ..+.+++|+|+++.|++.++++++..++.  ++.++++|+..+|+.+++||+|++.-
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa-~~~~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dP  256 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAG-LMGAKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIATDP  256 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHH-HhCCeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEEECC
Confidence            477899999999999887765 45778999999999999999999988884  58999999999998888999999963

This family is found exclusively in the Archaea.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.13  E-value=5.2e-10  Score=91.23  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=62.4

Q ss_pred             CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .+|||+|||+|.++..++. .++.+++|+|+|+.+++.|++++...++. .+++|+++|+.. ++++.+||+|+++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLE-HRVEFIQSNLFE-PLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhc-cCcCCCccEEEEC
Confidence            6899999999999998886 34579999999999999999999888874 469999999865 3444589999986

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.12  E-value=3.1e-10  Score=85.04  Aligned_cols=74  Identities=24%  Similarity=0.209  Sum_probs=62.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+++|+|+|||||.++...+-.....|+++|+.+++++.++++..+.+   .+++|+++|+.++.   +.||.|+++--|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~dv~~~~---~~~dtvimNPPF  118 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVADVSDFR---GKFDTVIMNPPF  118 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcchhhcC---CccceEEECCCC
Confidence            778999999999999887764445799999999999999999998843   68999999999884   568888876433

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.12  E-value=2.4e-11  Score=94.01  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .|...+..... ....++|+|||+|.-++-++ ....+|+|+|+|+.||+.|++........ ........++.+|--.+
T Consensus        22 dw~~~ia~~~~-~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~~-t~~~ms~~~~v~L~g~e   98 (261)
T KOG3010|consen   22 DWFKKIASRTE-GHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYCH-TPSTMSSDEMVDLLGGE   98 (261)
T ss_pred             HHHHHHHhhCC-CcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCccccc-CCccccccccccccCCC
Confidence            33334444432 22389999999997666666 44568999999999999998764322211 11222233333443347


Q ss_pred             CceeEEEecccccccCChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +++|+|++..++|++. .+++.++
T Consensus        99 ~SVDlI~~Aqa~HWFd-le~fy~~  121 (261)
T KOG3010|consen   99 ESVDLITAAQAVHWFD-LERFYKE  121 (261)
T ss_pred             cceeeehhhhhHHhhc-hHHHHHH
Confidence            8999999999999995 4555443

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.12  E-value=2.7e-10  Score=77.40  Aligned_cols=86  Identities=30%  Similarity=0.390  Sum_probs=68.6

Q ss_pred             eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEecccccc
Q 027913          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGTLVLCS  206 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~~~l~~  206 (217)
                      +|||+|||.|.++..+++....+++++|+++.+++.+++.....+.  .++.++..|..+... ..++||+|++..++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--DNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--cceEEEEcChhhhccccCCceEEEEEccceee
Confidence            5899999999999988865677999999999999999864433333  578999999988764 5678999999999988


Q ss_pred             -cCChhhhhc
Q 027913          207 -VKDVDMTLQ  215 (217)
Q Consensus       207 -~~d~~~~L~  215 (217)
                       ..+....++
T Consensus        79 ~~~~~~~~l~   88 (107)
T cd02440          79 LVEDLARFLE   88 (107)
T ss_pred             hhhHHHHHHH
Confidence             555555443

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.11  E-value=5e-10  Score=90.10  Aligned_cols=84  Identities=17%  Similarity=0.296  Sum_probs=67.3

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+. .++.+|||||||+|.++..+++. +.+++++|+++.|++.+++++..  .  .+++++.+|+..++++  
T Consensus        18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~--~~v~ii~~D~~~~~~~--   90 (258)
T PRK14896         18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--A--GNVEIIEGDALKVDLP--   90 (258)
T ss_pred             HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--C--CCEEEEEeccccCCch--
Confidence            334444443 46789999999999999999865 56899999999999999988754  2  5899999999998765  


Q ss_pred             ceeEEEeccccc
Q 027913          194 SVDAVVGTLVLC  205 (217)
Q Consensus       194 sfD~V~~~~~l~  205 (217)
                      .||.|+++.-++
T Consensus        91 ~~d~Vv~NlPy~  102 (258)
T PRK14896         91 EFNKVVSNLPYQ  102 (258)
T ss_pred             hceEEEEcCCcc
Confidence            489998875543

>PHA03411 putative methyltransferase; Provisional

Probab=99.10  E-value=2.9e-10  Score=90.92  Aligned_cols=77  Identities=12%  Similarity=0.151  Sum_probs=64.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ...+|||+|||+|.++..++.. .+.+++|+|+++.|++.++++.       .+++++++|+..+.. +.+||+|+++-.
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsNPP  135 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISNPP  135 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEcCC
Confidence            4679999999999988877653 3579999999999999998864       467899999988753 468999999988


Q ss_pred             ccccCC
Q 027913          204 LCSVKD  209 (217)
Q Consensus       204 l~~~~d  209 (217)
                      +.+.+.
T Consensus       136 F~~l~~  141 (279)
T PHA03411        136 FGKINT  141 (279)
T ss_pred             ccccCc
Confidence            888653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.10  E-value=1.1e-09  Score=82.37  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      +.+...+.++. .++.+++|||||+|..+..++. .+..+++++|-++++++..+++..+.++  +|++++.+|+.+.--
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~--~n~~vv~g~Ap~~L~   98 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV--DNLEVVEGDAPEALP   98 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC--CcEEEEeccchHhhc
Confidence            34444566666 6889999999999999998884 6677999999999999999999999997  799999999876522


Q ss_pred             CCCceeEEEecccccccCCh
Q 027913          191 SDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~  210 (217)
                      ...+||.|+.... ..++..
T Consensus        99 ~~~~~daiFIGGg-~~i~~i  117 (187)
T COG2242          99 DLPSPDAIFIGGG-GNIEEI  117 (187)
T ss_pred             CCCCCCEEEECCC-CCHHHH
Confidence            2227999998877 555443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.09  E-value=5e-10  Score=96.81  Aligned_cols=85  Identities=25%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----  188 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----  188 (217)
                      +...+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+|++|++.|++++...++  .+++|+++|+.+.    
T Consensus       285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~--~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL--DNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEEeChHHhhhhh
Confidence            3334444443 46789999999999999998854 46899999999999999999988887  5799999998653    


Q ss_pred             cCCCCceeEEEec
Q 027913          189 PVSDASVDAVVGT  201 (217)
Q Consensus       189 ~~~~~sfD~V~~~  201 (217)
                      ++.+++||+|++.
T Consensus       362 ~~~~~~fD~Vi~d  374 (443)
T PRK13168        362 PWALGGFDKVLLD  374 (443)
T ss_pred             hhhcCCCCEEEEC
Confidence            3445789999974

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=4.8e-10  Score=90.66  Aligned_cols=84  Identities=24%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      ++++++..++++|||+|||+|-++...++-....++|+|+.|..++.+++++..+++.. .+.....+....+ ..+.||
T Consensus       154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~~~~~~~~~~~-~~~~~D  231 (300)
T COG2264         154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-LVQAKGFLLLEVP-ENGPFD  231 (300)
T ss_pred             HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-hhhcccccchhhc-ccCccc
Confidence            44555556899999999999999998886666689999999999999999999988741 2222233332222 336999


Q ss_pred             EEEecc
Q 027913          197 AVVGTL  202 (217)
Q Consensus       197 ~V~~~~  202 (217)
                      +|+++-
T Consensus       232 vIVANI  237 (300)
T COG2264         232 VIVANI  237 (300)
T ss_pred             EEEehh
Confidence            999875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.07  E-value=4.7e-10  Score=90.94  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .+++.+. .++.+|||||||+|.++..+++.. .+++|+|+++.|++.+++++..     .+++++++|+..+++++-.+
T Consensus        33 ~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~~~~~~~~~~~~-----~~v~~i~~D~~~~~~~~~~~  106 (272)
T PRK00274         33 KIVDAAGPQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRDLAPILAETFAE-----DNLTIIEGDALKVDLSELQP  106 (272)
T ss_pred             HHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHHHHHHHHHhhcc-----CceEEEEChhhcCCHHHcCc
Confidence            3444444 477899999999999999998654 4899999999999999987632     47899999999987654225


Q ss_pred             eEEEecc
Q 027913          196 DAVVGTL  202 (217)
Q Consensus       196 D~V~~~~  202 (217)
                      |.|+++.
T Consensus       107 ~~vv~Nl  113 (272)
T PRK00274        107 LKVVANL  113 (272)
T ss_pred             ceEEEeC
Confidence            7777764

>PRK14968 putative methyltransferase; Provisional

Probab=99.07  E-value=1.4e-09  Score=83.01  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=65.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..+++. +.+++++|+++++++.+++++...++....+.++..|+.+. +.+.+||+|+++..+
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~  100 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY  100 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence            7789999999999999998865 78999999999999999999988776412288999987663 455689999987654


Q ss_pred             c
Q 027913          205 C  205 (217)
Q Consensus       205 ~  205 (217)
                      .
T Consensus       101 ~  101 (188)
T PRK14968        101 L  101 (188)
T ss_pred             C
Confidence            3

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.07  E-value=5.8e-10  Score=89.36  Aligned_cols=73  Identities=26%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .++.+..+        +.+||+|+++..
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-~~~~~~~~--------~~~fD~Vvani~  188 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE-LNVYLPQG--------DLKADVIVANIL  188 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-ceEEEccC--------CCCcCEEEEcCc
Confidence            478899999999999888776544446999999999999999999877753 23333222        227999998765


Q ss_pred             cc
Q 027913          204 LC  205 (217)
Q Consensus       204 l~  205 (217)
                      .+
T Consensus       189 ~~  190 (250)
T PRK00517        189 AN  190 (250)
T ss_pred             HH
Confidence            44

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.07  E-value=1.1e-09  Score=89.22  Aligned_cols=86  Identities=20%  Similarity=0.263  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..-++++.+..++++|||+|||+|-++...++....+|+|+|+++..++.|++++..+++. .++.+.  ....  ...+
T Consensus       150 lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~v~--~~~~--~~~~  224 (295)
T PF06325_consen  150 LCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-DRIEVS--LSED--LVEG  224 (295)
T ss_dssp             HHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-TCEEES--CTSC--TCCS
T ss_pred             HHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-eeEEEE--Eecc--cccc
Confidence            3334455555688999999999999998887665568999999999999999999999986 355442  2222  2348


Q ss_pred             ceeEEEecccc
Q 027913          194 SVDAVVGTLVL  204 (217)
Q Consensus       194 sfD~V~~~~~l  204 (217)
                      .||+|+++-..
T Consensus       225 ~~dlvvANI~~  235 (295)
T PF06325_consen  225 KFDLVVANILA  235 (295)
T ss_dssp             -EEEEEEES-H
T ss_pred             cCCEEEECCCH
Confidence            99999987543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.06  E-value=8.7e-10  Score=90.04  Aligned_cols=89  Identities=16%  Similarity=0.218  Sum_probs=69.3

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ..+++... .++.+|||||||+|.++..+++. +.+++++|+++.|++.+++++...+.. .+++++.+|+...+++  .
T Consensus        26 ~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~-~~v~ii~~Dal~~~~~--~  101 (294)
T PTZ00338         26 DKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLA-SKLEVIEGDALKTEFP--Y  101 (294)
T ss_pred             HHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECCHhhhccc--c
Confidence            34444444 47789999999999999998853 568999999999999999998766533 6899999999887653  6


Q ss_pred             eeEEEecccccccCC
Q 027913          195 VDAVVGTLVLCSVKD  209 (217)
Q Consensus       195 fD~V~~~~~l~~~~d  209 (217)
                      ||.|+++ ..+++..
T Consensus       102 ~d~VvaN-lPY~Ist  115 (294)
T PTZ00338        102 FDVCVAN-VPYQISS  115 (294)
T ss_pred             cCEEEec-CCcccCc
Confidence            8988864 4444443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.06  E-value=1.8e-09  Score=83.38  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~s  194 (217)
                      ++..+. .++.+|||+|||+|.++..+++ .++.+++++|+++.+++.+++++...++  .+++++.+|+.. ++.....
T Consensus        32 l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~--~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV--KNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CCeEEEECchHHHHhhCCCC
Confidence            344443 4678999999999999888875 4567999999999999999999988887  479999999865 2221234


Q ss_pred             eeEEEe
Q 027913          195 VDAVVG  200 (217)
Q Consensus       195 fD~V~~  200 (217)
                      +|.|+.
T Consensus       110 ~d~v~~  115 (196)
T PRK07402        110 PDRVCI  115 (196)
T ss_pred             CCEEEE
Confidence            576654

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.03  E-value=1.8e-09  Score=88.09  Aligned_cols=82  Identities=23%  Similarity=0.300  Sum_probs=71.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ..++.|||+|||+|.++...++....+|++||-|. +.+.|++.+..+++. ..++++.+.++++.+|..++|+|++-++
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLE-DVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCcc-ceEEEeecceEEEecCccceeEEeehhh
Confidence            48899999999999999888877788999999875 459999999999986 6799999999998877889999999776


Q ss_pred             cccc
Q 027913          204 LCSV  207 (217)
Q Consensus       204 l~~~  207 (217)
                      =+++
T Consensus       137 Gy~L  140 (346)
T KOG1499|consen  137 GYFL  140 (346)
T ss_pred             hHHH
Confidence            5443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.03  E-value=2.3e-09  Score=82.75  Aligned_cols=77  Identities=8%  Similarity=-0.020  Sum_probs=63.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||+|||+|.++..++.....+|+++|.++.+++.++++++..++  .+++++.+|+... +...++||+|++.--
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~--~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA--GNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            5679999999999999865444457999999999999999999988887  4899999998764 223457999998654

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.01  E-value=1.1e-09  Score=85.88  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=67.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH--------c--CCCCCCeEEEecccccccCC--
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA--------A--GLPLTNFKFLQAVGEAIPVS--  191 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~--------~--~~~~~~v~~~~~d~~~l~~~--  191 (217)
                      .++.+||+.|||.|..+.+|+ ..|.+|+|+|+|+..++.+.+....        .  -....+++++++|+.+++..  
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA-~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFL-SKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHH-hCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            356899999999999999998 5678899999999999988663200        0  00114789999999998632  


Q ss_pred             -CCceeEEEecccccccCCh
Q 027913          192 -DASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       192 -~~sfD~V~~~~~l~~~~d~  210 (217)
                       .+.||+|+-..+|++++..
T Consensus       121 ~~~~fD~VyDra~~~Alpp~  140 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPND  140 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHH
Confidence             2689999999999999753

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.99  E-value=1.8e-09  Score=94.55  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ++.+|||+|||+|.++..++. .++.+++++|+|+.+++.|++++...++. .++.++.+|+... +++++||+|+++-
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNP  214 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNP  214 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCc-cceeeeecchhhh-CcCCCccEEEECC
Confidence            346899999999999988875 45679999999999999999999888765 5789999997542 3456899999863

>PHA03412 putative methyltransferase; Provisional

Probab=98.98  E-value=1e-09  Score=85.87  Aligned_cols=75  Identities=12%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhC----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .+.+|||+|||+|.++..+++.    ...+++++|+++.+++.|+++.       .++.++.+|+...++ +++||+|++
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------~~~~~~~~D~~~~~~-~~~FDlIIs  120 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------PEATWINADALTTEF-DTLFDMAIS  120 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-------cCCEEEEcchhcccc-cCCccEEEE
Confidence            5679999999999999887753    3458999999999999999875       357899999987665 468999999


Q ss_pred             ccccccc
Q 027913          201 TLVLCSV  207 (217)
Q Consensus       201 ~~~l~~~  207 (217)
                      +--+.-.
T Consensus       121 NPPY~~~  127 (241)
T PHA03412        121 NPPFGKI  127 (241)
T ss_pred             CCCCCCc
Confidence            7655543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.97  E-value=7.3e-10  Score=82.81  Aligned_cols=66  Identities=18%  Similarity=0.181  Sum_probs=55.9

Q ss_pred             EEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCCceeEEEecccccccCChhhhhcCC
Q 027913          152 LGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       152 ~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e~  217 (217)
                      +|+|+|++|++.|+++....+.. ..+++|+++|++++|+++++||+|++.+++++++|+.++|+|+
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei   67 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEM   67 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHH
Confidence            58999999999998776432210 1479999999999999999999999999999999999998763

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=4.5e-09  Score=85.37  Aligned_cols=71  Identities=23%  Similarity=0.297  Sum_probs=58.4

Q ss_pred             eEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          128 KVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      +|||||||+|..+..++.. +...|+|+|+|+.+++.|++++...++  .++.++..|...- +. ++||+|+++-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~~~dlf~~-~~-~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVVQSDLFEP-LR-GKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEEeeecccc-cC-CceeEEEeCC
Confidence            7999999999999999864 446999999999999999999999987  4667777764332 23 4899999863

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.97  E-value=6.9e-09  Score=84.10  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++. .... .++.++.+|+... +++++||+|+++-
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~-~~i~~~~~d~~~~-~~~~~fD~Iv~np  183 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLG-ARVEFLQGDWFEP-LPGGRFDLIVSNP  183 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCC-CcEEEEEccccCc-CCCCceeEEEECC
Confidence            36789999999999999988863 45799999999999999999987 2222 5899999998543 3457899999864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=6e-09  Score=83.96  Aligned_cols=89  Identities=24%  Similarity=0.262  Sum_probs=69.0

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      +++.+. ..+.+|||+|||.|.++..+++ .+..+++-+|.|...++.+++++...++.  +..++..|+-. +.++ +|
T Consensus       150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~-~v~~-kf  225 (300)
T COG2813         150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYE-PVEG-KF  225 (300)
T ss_pred             HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEecccc-cccc-cc
Confidence            455555 3456999999999999999987 55689999999999999999999988873  44555555433 3343 99


Q ss_pred             eEEEecccccccCCh
Q 027913          196 DAVVGTLVLCSVKDV  210 (217)
Q Consensus       196 D~V~~~~~l~~~~d~  210 (217)
                      |+|+|+--||--.+.
T Consensus       226 d~IisNPPfh~G~~v  240 (300)
T COG2813         226 DLIISNPPFHAGKAV  240 (300)
T ss_pred             cEEEeCCCccCCcch
Confidence            999999888855443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.93  E-value=6.9e-09  Score=82.28  Aligned_cols=76  Identities=22%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-----CCCCcee
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-----VSDASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-----~~~~sfD  196 (217)
                      ++++|||||||+|+.+..++..  .+.+++++|+++++++.|++++...++. .+++++.+|+.+. +     .+.++||
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD  146 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-HKINFIQSDALSALDQLLNNDPKPEFD  146 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence            7889999999999987777752  3569999999999999999999999986 6899999998764 2     1246899


Q ss_pred             EEEec
Q 027913          197 AVVGT  201 (217)
Q Consensus       197 ~V~~~  201 (217)
                      +|+.-
T Consensus       147 ~VfiD  151 (234)
T PLN02781        147 FAFVD  151 (234)
T ss_pred             EEEEC
Confidence            99874

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=3.7e-09  Score=75.75  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ..++.++|+|||.|.+....+-.....++|+|+.++.++.+.+++.+..+   +++++++|+.++-+..+.||.++.+--
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fDtaviNpp  123 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFDTAVINPP  123 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEeeEEecCC
Confidence            48899999999999988666534456899999999999999999988876   679999999998877799999998765


Q ss_pred             cc
Q 027913          204 LC  205 (217)
Q Consensus       204 l~  205 (217)
                      |.
T Consensus       124 FG  125 (185)
T KOG3420|consen  124 FG  125 (185)
T ss_pred             CC
Confidence            53

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.92  E-value=4.8e-09  Score=89.09  Aligned_cols=77  Identities=19%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--C--CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--V--SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~--~~~sfD~V~~  200 (217)
                      ++++|||+|||+|.++...+.....+|+++|+|+.+++.|++++...++...+++++++|+.++.  +  ..++||+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            67899999999999887765454568999999999999999999988874347999999987752  2  3468999997


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       300 D  300 (396)
T PRK15128        300 D  300 (396)
T ss_pred             C
Confidence            5

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.92  E-value=6.8e-09  Score=89.52  Aligned_cols=74  Identities=22%  Similarity=0.241  Sum_probs=63.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V~  199 (217)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++  .+++|+.+|+...    ++.+++||+|+
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~~D~vi  367 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI--ANVEFLAGTLETVLPKQPWAGQIPDVLL  367 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC--CceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence            35689999999999999999854 46899999999999999999988887  5899999998763    23456799998


Q ss_pred             e
Q 027913          200 G  200 (217)
Q Consensus       200 ~  200 (217)
                      .
T Consensus       368 ~  368 (431)
T TIGR00479       368 L  368 (431)
T ss_pred             E
Confidence            6

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK04266 fibrillarin; Provisional

Probab=98.91  E-value=4.9e-09  Score=82.57  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=58.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++.. ...|+++|+++.|++.+.++++..    .|+.++.+|+...    ++. ++||+|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~----~nv~~i~~D~~~~~~~~~l~-~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER----KNIIPILADARKPERYAHVV-EKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc----CCcEEEECCCCCcchhhhcc-ccCCEE
Confidence            578899999999999999988633 458999999999999888776543    4789999998652    233 569999


Q ss_pred             Eec
Q 027913          199 VGT  201 (217)
Q Consensus       199 ~~~  201 (217)
                      ++.
T Consensus       146 ~~d  148 (226)
T PRK04266        146 YQD  148 (226)
T ss_pred             EEC
Confidence            853

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=6e-09  Score=90.13  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=63.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++  ..+.+++++|+++.+++.+++++...|+  .+++++++|+..++ ++++||+|++
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--TIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--CeEEEEeCcccccc-cCCCCCEEEE
Confidence            4778999999999998877765  2345899999999999999999999887  47999999998875 4578999995

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.90  E-value=7.1e-09  Score=83.22  Aligned_cols=82  Identities=13%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+. .++.+|||||||+|.++..+++.. ..++++|+++.+++.++++...  .  .+++++.+|+..++++  
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~--~~v~v~~~D~~~~~~~--   90 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--Y--ERLEVIEGDALKVDLP--   90 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--C--CcEEEEECchhcCChh--
Confidence            334555444 467899999999999999998543 5699999999999999987643  2  5899999999998765  


Q ss_pred             cee---EEEeccc
Q 027913          194 SVD---AVVGTLV  203 (217)
Q Consensus       194 sfD---~V~~~~~  203 (217)
                      .||   +|+++..
T Consensus        91 ~~d~~~~vvsNlP  103 (253)
T TIGR00755        91 DFPKQLKVVSNLP  103 (253)
T ss_pred             HcCCcceEEEcCC
Confidence            466   6666544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.90  E-value=2e-08  Score=82.74  Aligned_cols=81  Identities=20%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEe-ccccccc----CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQ-AVGEAIP----VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~-~d~~~l~----~~~~sfD~  197 (217)
                      .+.++||||||+|.....++. .++.+++|+|+++.+++.|++++... ++. .+++++. .|...+.    .+++.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCc-CcEEEEEccchhhhhhcccccCCceEE
Confidence            567999999999977666653 56789999999999999999999988 675 5787764 3433332    24578999


Q ss_pred             EEecccccc
Q 027913          198 VVGTLVLCS  206 (217)
Q Consensus       198 V~~~~~l~~  206 (217)
                      |+|+=-++-
T Consensus       193 ivcNPPf~~  201 (321)
T PRK11727        193 TLCNPPFHA  201 (321)
T ss_pred             EEeCCCCcC
Confidence            999866553

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.90  E-value=9.4e-09  Score=86.97  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~~  201 (217)
                      ++.+|||+|||+|.++..++. .+.+|+|+|+++.+++.|+++++..++  .+++|+.+|+.++.. ...+||+|+..
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~~av~~a~~N~~~~~~--~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIESEAIACAQQSAQMLGL--DNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            567999999999999998884 457899999999999999999988887  489999999977531 12469999874

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.89  E-value=2e-08  Score=77.80  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-  188 (217)
                      ......++...  .+++|||||+++|+.+..+++.  .+.+++.+|++++..+.|++.++..|+. ++++++.+|+.+. 
T Consensus        34 g~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-~~I~~~~gda~~~l  110 (205)
T PF01596_consen   34 GQLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-DRIEVIEGDALEVL  110 (205)
T ss_dssp             HHHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-GGEEEEES-HHHHH
T ss_pred             HHHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-CcEEEEEeccHhhH
Confidence            34444455555  8899999999999999999973  3579999999999999999999999986 7999999998763 


Q ss_pred             c-----CCCCceeEEEecc
Q 027913          189 P-----VSDASVDAVVGTL  202 (217)
Q Consensus       189 ~-----~~~~sfD~V~~~~  202 (217)
                      +     .+.++||+|+.-.
T Consensus       111 ~~l~~~~~~~~fD~VFiDa  129 (205)
T PF01596_consen  111 PELANDGEEGQFDFVFIDA  129 (205)
T ss_dssp             HHHHHTTTTTSEEEEEEES
T ss_pred             HHHHhccCCCceeEEEEcc
Confidence            2     1235899999643

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.89  E-value=1.5e-08  Score=81.20  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEecc
Q 027913          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGTL  202 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~~  202 (217)
                      +.+|||+|||+|.++..+++ .++.+++++|+|+.+++.|++++...+     ++++++|+.+. + ...++||+|+++-
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEEEECC
Confidence            45899999999999988875 456789999999999999999987654     36889998653 2 1135799999864

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.89  E-value=7.9e-09  Score=88.91  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=65.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..++..  .+.+++++|+++.+++.+++++...|+  .+++++++|+..++ +.+++||.|++
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~--~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL--SSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEECchhhhhhhhhccCCEEEE
Confidence            47789999999999998888763  356899999999999999999999888  47999999998876 45678999986

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.89  E-value=6.9e-09  Score=83.77  Aligned_cols=75  Identities=13%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.  ....|+++|+++.+++.++++++..++  .++.++..|...++...+.||.|++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~--~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV--LNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--CcEEEecCCHHHhhhhccCCCEEEE
Confidence            47789999999999999888763  235899999999999999999999887  5799999999887655567999986

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.89  E-value=1e-08  Score=79.02  Aligned_cols=79  Identities=27%  Similarity=0.336  Sum_probs=63.7

Q ss_pred             CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c--CCCCceeEEEec
Q 027913          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVGT  201 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~sfD~V~~~  201 (217)
                      ...+||||||.|.++..+|. .++..++|+|+....+..+.+++...++  .|+.++++|+..+ .  ++++++|.|+..
T Consensus        18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l--~Nv~~~~~da~~~l~~~~~~~~v~~i~i~   95 (195)
T PF02390_consen   18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL--KNVRFLRGDARELLRRLFPPGSVDRIYIN   95 (195)
T ss_dssp             CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT--SSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc--cceEEEEccHHHHHhhcccCCchheEEEe
Confidence            34899999999999999986 7889999999999999999999999888  6999999999883 2  567899999876


Q ss_pred             ccccc
Q 027913          202 LVLCS  206 (217)
Q Consensus       202 ~~l~~  206 (217)
                      +-=.|
T Consensus        96 FPDPW  100 (195)
T PF02390_consen   96 FPDPW  100 (195)
T ss_dssp             S----
T ss_pred             CCCCC
Confidence            64333

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK04457 spermidine synthase; Provisional

Probab=98.88  E-value=7.8e-09  Score=83.30  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=61.4

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      ++++|||||||+|.++..+++ .++.+++++|+++++++.|++.+...+.. ++++++.+|+... .-..++||+|++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~-~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENG-ERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCC-CceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            678999999999999998875 45679999999999999999987544322 5899999998654 2223689999974

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.88  E-value=1.5e-08  Score=87.49  Aligned_cols=84  Identities=19%  Similarity=0.127  Sum_probs=69.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~  197 (217)
                      .++.+|||+|||+|..+..+++.  ....++++|+++.+++.+++++...|+  .+++++.+|+..++    +..++||.
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~~~~fD~  328 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL--KSIKILAADSRNLLELKPQWRGYFDR  328 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC--CeEEEEeCChhhcccccccccccCCE
Confidence            47789999999999999888863  345899999999999999999999998  47999999998875    44678999


Q ss_pred             EEec------ccccccCC
Q 027913          198 VVGT------LVLCSVKD  209 (217)
Q Consensus       198 V~~~------~~l~~~~d  209 (217)
                      |++-      .++++.++
T Consensus       329 Vl~DaPCSg~G~~~r~p~  346 (434)
T PRK14901        329 ILLDAPCSGLGTLHRHPD  346 (434)
T ss_pred             EEEeCCCCcccccccCcc
Confidence            9962      35555554

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.86  E-value=4.2e-09  Score=81.17  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=73.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .....++|||||-|...+.+..+.-.+++-+|.|-.|++.++..- ..+   -.+...++|-+.++|.+++||+|+++..
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~---i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPS---IETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCc---eEEEEEecchhcccccccchhhhhhhhh
Confidence            356789999999999999988666678999999999999988652 223   2577889999999999999999999999


Q ss_pred             ccccCChhhhh
Q 027913          204 LCSVKDVDMTL  214 (217)
Q Consensus       204 l~~~~d~~~~L  214 (217)
                      +||++|....+
T Consensus       147 lHW~NdLPg~m  157 (325)
T KOG2940|consen  147 LHWTNDLPGSM  157 (325)
T ss_pred             hhhhccCchHH
Confidence            99999876543

>PRK00811 spermidine synthase; Provisional

Probab=98.86  E-value=1.5e-08  Score=82.66  Aligned_cols=80  Identities=15%  Similarity=0.166  Sum_probs=64.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--C-CCCCeEEEecccccc-cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--L-PLTNFKFLQAVGEAI-PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~-~~~~v~~~~~d~~~l-~~~~~sfD~V  198 (217)
                      ..+++||+||||+|..++.+++.+ ..+|++||+++++++.|++.+...+  . ..++++++.+|+... ....++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            467899999999999999988764 4689999999999999999886432  1 236899999998775 2345789999


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      ++-..
T Consensus       155 i~D~~  159 (283)
T PRK00811        155 IVDST  159 (283)
T ss_pred             EECCC
Confidence            98543

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.86  E-value=1.6e-08  Score=83.89  Aligned_cols=85  Identities=15%  Similarity=0.140  Sum_probs=60.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC---------CCCCCeEEEeccccccc----CC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG---------LPLTNFKFLQAVGEAIP----VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---------~~~~~v~~~~~d~~~l~----~~  191 (217)
                      ++.+|||||||.|.-+..+....-..++|+|++...|+.|+++..+..         .. -...|+.+|.....    +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~-f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD-FIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC-CEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc-chhheeccccccchhhhhcc
Confidence            778999999999988888877777799999999999999999993311         00 14567888775321    33


Q ss_pred             C--CceeEEEecccccccCCh
Q 027913          192 D--ASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       192 ~--~sfD~V~~~~~l~~~~d~  210 (217)
                      +  ..||+|-|-++||+.=..
T Consensus       141 ~~~~~FDvVScQFalHY~Fes  161 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFES  161 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSS
T ss_pred             ccCCCcceeehHHHHHHhcCC
Confidence            3  599999999999987443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=4.4e-08  Score=84.36  Aligned_cols=76  Identities=24%  Similarity=0.333  Sum_probs=59.0

Q ss_pred             CCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          126 AKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      ++.|||||||+|.+....++.     ...+|++||.|+.++...+++++..++. ++|+++.+|++++..+ .++|+||+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~d~r~v~lp-ekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHGDMREVELP-EKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeCcccCCCCC-CceeEEEE
Confidence            578999999999997665543     2469999999999998888887888886 7899999999999765 48999998


Q ss_pred             ccc
Q 027913          201 TLV  203 (217)
Q Consensus       201 ~~~  203 (217)
                      -.+
T Consensus       265 ElL  267 (448)
T PF05185_consen  265 ELL  267 (448)
T ss_dssp             ---
T ss_pred             ecc
Confidence            554

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.85  E-value=1.9e-08  Score=86.63  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.. +..++++|+++.+++.+++++...++   ++.++++|+..++  +..++||.|++
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCEEEE
Confidence            478899999999999998888643 36899999999999999999988886   4689999998764  34578999994

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.84  E-value=1.4e-08  Score=92.39  Aligned_cols=77  Identities=19%  Similarity=0.100  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~~  201 (217)
                      ++++|||+|||+|.++..++.....+|+++|+|+.+++.|++++...++...+++++++|+.+.. -..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            67899999999999999998654457999999999999999999988874347999999986642 114689999984

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.80  E-value=2.5e-08  Score=86.35  Aligned_cols=75  Identities=17%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~  199 (217)
                      .++.+|||+|||+|..+..+++.  +..+++++|+++.+++.+++++...++  .+++++++|+..++  ++ ++||+|+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~--~~v~~~~~D~~~~~~~~~-~~fD~Vl  325 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL--TNIETKALDARKVHEKFA-EKFDKIL  325 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCCcccccchhc-ccCCEEE
Confidence            46789999999999999888863  356899999999999999999999888  46999999998763  33 7899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +.
T Consensus       326 ~D  327 (444)
T PRK14902        326 VD  327 (444)
T ss_pred             Ec
Confidence            74

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.79  E-value=4.8e-08  Score=79.34  Aligned_cols=97  Identities=22%  Similarity=0.368  Sum_probs=76.3

Q ss_pred             hhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913          103 SMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      ++..|-+ ...+.+.+++... ..++.|||+|||+|.+....++....+|++|+-| +|.++|++.++...+. +++.++
T Consensus       155 MmQDYVR-TgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~-~rItVI  231 (517)
T KOG1500|consen  155 MMQDYVR-TGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLA-DRITVI  231 (517)
T ss_pred             HHHHHHh-hhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCcc-ceEEEc
Confidence            3344444 3344555555544 6889999999999999988887777899999965 7999999999888776 799999


Q ss_pred             ecccccccCCCCceeEEEeccc
Q 027913          182 QAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       182 ~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .+.++++.+| ++.|+||+--+
T Consensus       232 ~GKiEdieLP-Ek~DviISEPM  252 (517)
T KOG1500|consen  232 PGKIEDIELP-EKVDVIISEPM  252 (517)
T ss_pred             cCccccccCc-hhccEEEeccc
Confidence            9999999887 67999997543

>PLN02476 O-methyltransferase

Probab=98.78  E-value=6.9e-08  Score=77.92  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C----CCCcee
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V----SDASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~----~~~sfD  196 (217)
                      ++++|||||+|+|+.+..++..  .+.+++.+|.+++..+.|++++++.|+. .+++++.+|+.+. + +    ..++||
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD  196 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYD  196 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence            7899999999999999998863  3567999999999999999999999996 6899999998663 2 2    136899


Q ss_pred             EEEecc
Q 027913          197 AVVGTL  202 (217)
Q Consensus       197 ~V~~~~  202 (217)
                      +|+.-.
T Consensus       197 ~VFIDa  202 (278)
T PLN02476        197 FAFVDA  202 (278)
T ss_pred             EEEECC
Confidence            998643

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.77  E-value=4.3e-08  Score=84.44  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--CCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.. ..+++++|+++++++.++++++..|+. .++.+..+|....+.  +.++||.|++
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCEEEE
Confidence            478899999999999998888633 468999999999999999999998874 344557777765543  5678999985


Q ss_pred             ------cccccccCC
Q 027913          201 ------TLVLCSVKD  209 (217)
Q Consensus       201 ------~~~l~~~~d  209 (217)
                            ..++++.++
T Consensus       316 DaPcSg~G~~~~~p~  330 (426)
T TIGR00563       316 DAPCSATGVIRRHPD  330 (426)
T ss_pred             cCCCCCCcccccCcc
Confidence                  346666665

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=3.8e-08  Score=70.62  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=55.7

Q ss_pred             CCCeEEEECCcCCc-chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~  202 (217)
                      ++.++||||||.|. .+..|+ ..|.+|+++|+++..++.+++.         .+.++++|+.+.++. -..+|+|++..
T Consensus        16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~---------~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKL---------GLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHh---------CCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            56789999999996 777776 5688999999999998888765         347999998776532 35689999865


Q ss_pred             ccc
Q 027913          203 VLC  205 (217)
Q Consensus       203 ~l~  205 (217)
                      --.
T Consensus        86 pp~   88 (134)
T PRK04148         86 PPR   88 (134)
T ss_pred             CCH
Confidence            433

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.75  E-value=2.6e-08  Score=78.34  Aligned_cols=83  Identities=20%  Similarity=0.151  Sum_probs=55.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHH-HHHHHHHcCCCCCCe-EEEeccccc-----ccCCCCcee
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-AQTAAVAAGLPLTNF-KFLQAVGEA-----IPVSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-a~~~~~~~~~~~~~v-~~~~~d~~~-----l~~~~~sfD  196 (217)
                      .+++++||+|||+|.++..+++....+|+++|++++|+.. .++.        .++ .+...|++.     ++..-..+|
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------~~v~~~~~~ni~~~~~~~~~~d~~~~D  145 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------ERVKVLERTNIRYVTPADIFPDFATFD  145 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------CCeeEeecCCcccCCHhHcCCCceeee
Confidence            3778999999999999999987655689999999988876 2221        121 122333332     222224789


Q ss_pred             EEEecccccccCChhhhhc
Q 027913          197 AVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~  215 (217)
                      +++++..+ -+++...+|+
T Consensus       146 vsfiS~~~-~l~~i~~~l~  163 (228)
T TIGR00478       146 VSFISLIS-ILPELDLLLN  163 (228)
T ss_pred             EEEeehHh-HHHHHHHHhC
Confidence            88887665 3556655554

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.74  E-value=6.7e-08  Score=73.51  Aligned_cols=80  Identities=28%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCC---------eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDV---------QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~---------~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      .++..|||--||+|.++...+. ....         +++|.|+++.+++.+++++...++. ..+.+.+.|+..+++.++
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~-~~i~~~~~D~~~l~~~~~  105 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE-DYIDFIQWDARELPLPDG  105 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-GGEEEEE--GGGGGGTTS
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-CceEEEecchhhcccccC
Confidence            4678999999999999866543 2222         3899999999999999999999886 679999999999997788


Q ss_pred             ceeEEEecccc
Q 027913          194 SVDAVVGTLVL  204 (217)
Q Consensus       194 sfD~V~~~~~l  204 (217)
                      ++|+|++.--+
T Consensus       106 ~~d~IvtnPPy  116 (179)
T PF01170_consen  106 SVDAIVTNPPY  116 (179)
T ss_dssp             BSCEEEEE--S
T ss_pred             CCCEEEECcch
Confidence            99999986533

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02366 spermidine synthase

Probab=98.74  E-value=1e-07  Score=78.40  Aligned_cols=79  Identities=18%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc--CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP--VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~--~~~~sfD~V  198 (217)
                      ..+++||+||||.|..++.+++.+. .+++.+|+++.+++.+++.+...  ++..++++++.+|+...-  .+++.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4688999999999999999987654 58999999999999999987543  233368999999976542  235689999


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      ++-.
T Consensus       170 i~D~  173 (308)
T PLN02366        170 IVDS  173 (308)
T ss_pred             EEcC
Confidence            9854

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.74  E-value=4.3e-08  Score=76.78  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH-cC---------CCCCCeEEEeccc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AG---------LPLTNFKFLQAVG  185 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~---------~~~~~v~~~~~d~  185 (217)
                      .+++.+. .++.+||..|||.|.-+..|++ .|.+|+|+|+|+..++.+.+.... ..         ....+++++++|+
T Consensus        28 ~~~~~l~~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf  106 (218)
T PF05724_consen   28 EYLDSLALKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF  106 (218)
T ss_dssp             HHHHHHTTSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred             HHHHhcCCCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence            3444443 4667999999999999999985 578999999999999998543221 10         0124689999999


Q ss_pred             ccccCCC-CceeEEEecccccccCC
Q 027913          186 EAIPVSD-ASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       186 ~~l~~~~-~sfD~V~~~~~l~~~~d  209 (217)
                      -.++-.. ++||+|+-...|+-++.
T Consensus       107 F~l~~~~~g~fD~iyDr~~l~Alpp  131 (218)
T PF05724_consen  107 FELPPEDVGKFDLIYDRTFLCALPP  131 (218)
T ss_dssp             TTGGGSCHHSEEEEEECSSTTTS-G
T ss_pred             ccCChhhcCCceEEEEecccccCCH
Confidence            8886433 58999999999998863

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.73  E-value=4.8e-08  Score=74.90  Aligned_cols=67  Identities=21%  Similarity=0.254  Sum_probs=51.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~  193 (217)
                      .++.+|||||||+|.++..+++.  ...+++++|+++.+           ..  .++.++++|+.+.+        ++++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI--ENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC--CCceEEEeeCCChhHHHHHHHHhCCC
Confidence            47889999999999998887753  34579999999864           11  36788989987642        4567


Q ss_pred             ceeEEEeccc
Q 027913          194 SVDAVVGTLV  203 (217)
Q Consensus       194 sfD~V~~~~~  203 (217)
                      +||+|++...
T Consensus        98 ~~D~V~~~~~  107 (188)
T TIGR00438        98 KVDVVMSDAA  107 (188)
T ss_pred             CccEEEcCCC
Confidence            8999998654

>PLN02672 methionine S-methyltransferase

Probab=98.72  E-value=3.9e-08  Score=91.92  Aligned_cols=78  Identities=24%  Similarity=0.263  Sum_probs=61.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCC--------------CCCeEEEeccccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP--------------LTNFKFLQAVGEAIP  189 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~~~v~~~~~d~~~l~  189 (217)
                      ++.+|||+|||+|..+..+++. +..+++|+|+|+.+++.|++++...++.              ..+++|+++|+....
T Consensus       118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            3568999999999999998863 4579999999999999999999875431              137999999987643


Q ss_pred             CC-CCceeEEEecc
Q 027913          190 VS-DASVDAVVGTL  202 (217)
Q Consensus       190 ~~-~~sfD~V~~~~  202 (217)
                      .. ...||+||++-
T Consensus       198 ~~~~~~fDlIVSNP  211 (1082)
T PLN02672        198 RDNNIELDRIVGCI  211 (1082)
T ss_pred             cccCCceEEEEECC
Confidence            11 23799999963

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.71  E-value=1.7e-07  Score=74.20  Aligned_cols=91  Identities=19%  Similarity=0.311  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhc----CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913          112 AGYKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (217)
Q Consensus       112 ~~~~~~i~~~~~----~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  186 (217)
                      .++++.+++.+.    ..+..|||+|||+|..+..++.. +...++++|.|+.++..|.+++...++. +.+.++.-+++
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me  209 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIME  209 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccc
Confidence            345555555554    35668999999999998888763 4568999999999999999999988886 67777766554


Q ss_pred             c-----ccCCCCceeEEEeccc
Q 027913          187 A-----IPVSDASVDAVVGTLV  203 (217)
Q Consensus       187 ~-----l~~~~~sfD~V~~~~~  203 (217)
                      .     .+...+.+|+++++--
T Consensus       210 ~d~~~~~~l~~~~~dllvsNPP  231 (328)
T KOG2904|consen  210 SDASDEHPLLEGKIDLLVSNPP  231 (328)
T ss_pred             cccccccccccCceeEEecCCC
Confidence            3     2355689999998753

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.71  E-value=1.1e-07  Score=74.05  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEe-cccccc
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ-AVGEAI  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~-~d~~~l  188 (217)
                      ..+...++...  .+++|||||.+.|+.+..++.. + ..+++.+|.++++.+.|++++++.|+. ++++.+. +|..+.
T Consensus        48 g~~L~~L~~~~--~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-~~i~~~~~gdal~~  124 (219)
T COG4122          48 GALLRLLARLS--GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-DRIELLLGGDALDV  124 (219)
T ss_pred             HHHHHHHHHhc--CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEEecCcHHHH
Confidence            34444444444  8899999999999999999863 2 468999999999999999999999997 5688888 476544


Q ss_pred             -c-CCCCceeEEEec
Q 027913          189 -P-VSDASVDAVVGT  201 (217)
Q Consensus       189 -~-~~~~sfD~V~~~  201 (217)
                       . ...++||+|+.=
T Consensus       125 l~~~~~~~fDliFID  139 (219)
T COG4122         125 LSRLLDGSFDLVFID  139 (219)
T ss_pred             HHhccCCCccEEEEe
Confidence             2 346899999863

>PTZ00146 fibrillarin; Provisional

Probab=98.71  E-value=4.9e-08  Score=78.98  Aligned_cols=76  Identities=14%  Similarity=0.117  Sum_probs=57.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++..  ...|+++|+++.|++...+.+...    .|+.++..|+...   ....++||+|
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----~NI~~I~~Da~~p~~y~~~~~~vDvV  206 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----PNIVPIIEDARYPQKYRMLVPMVDVI  206 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCCEEEECCccChhhhhcccCCCCEE
Confidence            477899999999999999998743  358999999998665555544332    4789999998642   2233589999


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      ++...
T Consensus       207 ~~Dva  211 (293)
T PTZ00146        207 FADVA  211 (293)
T ss_pred             EEeCC
Confidence            98764

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.70  E-value=4e-08  Score=79.31  Aligned_cols=91  Identities=16%  Similarity=0.180  Sum_probs=70.9

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCC----CeEEEeccccc-----
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT----NFKFLQAVGEA-----  187 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~d~~~-----  187 (217)
                      .+++.+..++..++|+|||.|.-+..+-+..-..++|+|+++.-++.|++++++..-...    .+.|+++|...     
T Consensus       109 ~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d  188 (389)
T KOG1975|consen  109 VLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMD  188 (389)
T ss_pred             HHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHH
Confidence            345555578889999999999888887766667899999999999999999876432211    36889998743     


Q ss_pred             -ccCCCCceeEEEeccccccc
Q 027913          188 -IPVSDASVDAVVGTLVLCSV  207 (217)
Q Consensus       188 -l~~~~~sfD~V~~~~~l~~~  207 (217)
                       +++++.+||+|-|-++||+-
T Consensus       189 ~~e~~dp~fDivScQF~~HYa  209 (389)
T KOG1975|consen  189 LLEFKDPRFDIVSCQFAFHYA  209 (389)
T ss_pred             hccCCCCCcceeeeeeeEeee
Confidence             34456669999999999975

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.69  E-value=6.4e-08  Score=78.82  Aligned_cols=92  Identities=12%  Similarity=0.158  Sum_probs=70.5

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VS  191 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~  191 (217)
                      .+++.+. .++..+||.+||.|.++..+++..  ...|+|+|.++++++.+++++.+ .   .++.++.+|+.++.  .+
T Consensus        10 Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~---~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050         10 EVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F---GRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C---CcEEEEeCCHHHHHHHHH
Confidence            3455554 467899999999999999999753  47899999999999999998855 2   68999999998874  22


Q ss_pred             CC--ceeEEEecccc--cccCChhh
Q 027913          192 DA--SVDAVVGTLVL--CSVKDVDM  212 (217)
Q Consensus       192 ~~--sfD~V~~~~~l--~~~~d~~~  212 (217)
                      ++  ++|.|+.-...  +.+.++++
T Consensus        86 ~~~~~vDgIl~DLGvSs~Qld~~~R  110 (296)
T PRK00050         86 EGLGKVDGILLDLGVSSPQLDDAER  110 (296)
T ss_pred             cCCCccCEEEECCCccccccCCCcC
Confidence            22  79999986643  34455544

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.69  E-value=2.3e-07  Score=73.84  Aligned_cols=76  Identities=20%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ....+|||||+|.|.++..+++ .++.+++..|+ |++++.+++     .   ++++++.+|+. -++|.  +|+|+..+
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~---~rv~~~~gd~f-~~~P~--~D~~~l~~  166 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----A---DRVEFVPGDFF-DPLPV--ADVYLLRH  166 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----T---TTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----c---cccccccccHH-hhhcc--ccceeeeh
Confidence            4567899999999999999886 78889999999 788888888     1   79999999997 56665  99999999


Q ss_pred             cccccCChh
Q 027913          203 VLCSVKDVD  211 (217)
Q Consensus       203 ~l~~~~d~~  211 (217)
                      +||+++|.+
T Consensus       167 vLh~~~d~~  175 (241)
T PF00891_consen  167 VLHDWSDED  175 (241)
T ss_dssp             SGGGS-HHH
T ss_pred             hhhhcchHH
Confidence            999998754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.69  E-value=1.7e-07  Score=71.97  Aligned_cols=75  Identities=7%  Similarity=-0.008  Sum_probs=61.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C-CCC-ceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-SDA-SVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~-~~~-sfD~V~~  200 (217)
                      .+.+|||++||+|.++..++......|+++|.++.+++.+++++...++. .+++++.+|+... . + ... .||+|+.
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            67899999999999999988765568999999999999999999888874 4789999999553 2 2 223 3677765

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK03612 spermidine synthase; Provisional

Probab=98.69  E-value=4.9e-08  Score=85.96  Aligned_cols=81  Identities=22%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHH--HHH---cCCCCCCeEEEecccccc-cCCCCcee
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA--AVA---AGLPLTNFKFLQAVGEAI-PVSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~--~~~---~~~~~~~v~~~~~d~~~l-~~~~~sfD  196 (217)
                      +++++|||||||+|..++.+++.+. .+++++|+++++++.++++  +.+   ..+..++++++.+|..+. ...+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            3678999999999999999887655 7999999999999999983  222   122235899999999874 23347899


Q ss_pred             EEEecccc
Q 027913          197 AVVGTLVL  204 (217)
Q Consensus       197 ~V~~~~~l  204 (217)
                      +|++....
T Consensus       376 vIi~D~~~  383 (521)
T PRK03612        376 VIIVDLPD  383 (521)
T ss_pred             EEEEeCCC
Confidence            99987543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.69  E-value=2.7e-07  Score=73.33  Aligned_cols=83  Identities=19%  Similarity=0.156  Sum_probs=64.5

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--  191 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--  191 (217)
                      .|+..+. .++.+|||.|.|+|.++..+++  .+..+|+..|..++.++.|+++++..++. .++++...|+..-.+.  
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~-~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD-DNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-TTEEEEES-GGCG--STT
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-CCceeEecceeccccccc
Confidence            3455555 6999999999999999999986  56679999999999999999999999986 7999999999754442  


Q ss_pred             -CCceeEEEe
Q 027913          192 -DASVDAVVG  200 (217)
Q Consensus       192 -~~sfD~V~~  200 (217)
                       +..+|.|+.
T Consensus       110 ~~~~~DavfL  119 (247)
T PF08704_consen  110 LESDFDAVFL  119 (247)
T ss_dssp             -TTSEEEEEE
T ss_pred             ccCcccEEEE
Confidence             367999875

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.68  E-value=1.8e-07  Score=72.15  Aligned_cols=84  Identities=17%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      ++.+.. .++..|||+-||-|.++..+++ ..+..|+++|++|..++..+++++..++. .++..+.+|...+.. .+.|
T Consensus        94 Ri~~~v-~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-~~i~~~~~D~~~~~~-~~~~  170 (200)
T PF02475_consen   94 RIANLV-KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE-NRIEVINGDAREFLP-EGKF  170 (200)
T ss_dssp             HHHTC---TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T-TTEEEEES-GGG----TT-E
T ss_pred             HHHhcC-CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC-CeEEEEcCCHHHhcC-cccc
Confidence            344443 3789999999999999999986 56678999999999999999999999987 789999999998864 7899


Q ss_pred             eEEEeccc
Q 027913          196 DAVVGTLV  203 (217)
Q Consensus       196 D~V~~~~~  203 (217)
                      |.|++..-
T Consensus       171 drvim~lp  178 (200)
T PF02475_consen  171 DRVIMNLP  178 (200)
T ss_dssp             EEEEE--T
T ss_pred             CEEEECCh
Confidence            99998653

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.68  E-value=8.6e-08  Score=80.51  Aligned_cols=60  Identities=20%  Similarity=0.199  Sum_probs=53.1

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      +.+|||++||+|.++..+++. ...|+|+|+++++++.|++++...++  .+++|+.+|+.++
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~--~~v~~~~~d~~~~  257 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI--DNVQIIRMSAEEF  257 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEEcCHHHH
Confidence            457999999999999988854 35899999999999999999998887  5899999999774

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.68  E-value=9.9e-08  Score=80.43  Aligned_cols=60  Identities=22%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      +.+|||++||+|.++..+++. ..+|+|+|.++.+++.+++++...++  .+++|+.+|+.+.
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~--~~v~~~~~d~~~~  266 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI--DNVQIIRMSAEEF  266 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEEECCHHHH
Confidence            357999999999999988754 45899999999999999999988887  5899999999774

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=1.7e-07  Score=73.71  Aligned_cols=82  Identities=22%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      .|+..+. .++.+|||.|.|+|.++.+|+.  .+..+|+..|+-+++++.|+++++..++. +++++..+|+.+.-+++ 
T Consensus        85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~-d~v~~~~~Dv~~~~~~~-  162 (256)
T COG2519          85 YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG-DRVTLKLGDVREGIDEE-  162 (256)
T ss_pred             HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc-cceEEEecccccccccc-
Confidence            4555565 7999999999999999999985  45568999999999999999999998885 45999999998876554 


Q ss_pred             ceeEEEe
Q 027913          194 SVDAVVG  200 (217)
Q Consensus       194 sfD~V~~  200 (217)
                      .||+|+.
T Consensus       163 ~vDav~L  169 (256)
T COG2519         163 DVDAVFL  169 (256)
T ss_pred             ccCEEEE
Confidence            8999975

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.64  E-value=8e-08  Score=72.70  Aligned_cols=86  Identities=21%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccc-c--c-CCCCcee
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEA-I--P-VSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~-l--~-~~~~sfD  196 (217)
                      ..+.+|||||||+|..+..++.. ...+|+..|.++ .++..+.++...+  .. .++.+...|..+ .  . +...+||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~-~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLD-GRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccc-ccccCcEEEecCcccccccccccCC
Confidence            48899999999999888888765 577999999999 8999999987755  22 577888777644 1  1 3456899


Q ss_pred             EEEecccccccCChh
Q 027913          197 AVVGTLVLCSVKDVD  211 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~  211 (217)
                      +|+...+++.-...+
T Consensus       122 ~IlasDv~Y~~~~~~  136 (173)
T PF10294_consen  122 VILASDVLYDEELFE  136 (173)
T ss_dssp             EEEEES--S-GGGHH
T ss_pred             EEEEecccchHHHHH
Confidence            999999998754443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK01581 speE spermidine synthase; Validated

Probab=98.63  E-value=2e-07  Score=77.58  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHH--H---HHcCCCCCCeEEEecccccc-cCCCCcee
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTA--A---VAAGLPLTNFKFLQAVGEAI-PVSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~--~---~~~~~~~~~v~~~~~d~~~l-~~~~~sfD  196 (217)
                      ..+++||+||||+|..++.+++.+ ..++++||++++|++.|++.  +   .+..+..++++++.+|+... .-..+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            467899999999999988888754 46899999999999999962  1   11223236999999999874 34456899


Q ss_pred             EEEecc
Q 027913          197 AVVGTL  202 (217)
Q Consensus       197 ~V~~~~  202 (217)
                      +|++-.
T Consensus       229 VIIvDl  234 (374)
T PRK01581        229 VIIIDF  234 (374)
T ss_pred             EEEEcC
Confidence            999863

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.63  E-value=1.6e-07  Score=74.19  Aligned_cols=86  Identities=17%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      ....+|++... .++..|||||.|||.++..+. +.+.+|+++|+.+.|+....++....... .+.+++.+|+...+++
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lL-e~~kkVvA~E~Dprmvael~krv~gtp~~-~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLL-EAGKKVVAVEIDPRMVAELEKRVQGTPKS-GKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHH-HhcCeEEEEecCcHHHHHHHHHhcCCCcc-ceeeEEecccccCCCc
Confidence            45555666665 688999999999999999998 66789999999999999999998655443 6889999999888765


Q ss_pred             CCceeEEEecc
Q 027913          192 DASVDAVVGTL  202 (217)
Q Consensus       192 ~~sfD~V~~~~  202 (217)
                        .||.+|++.
T Consensus       123 --~fd~cVsNl  131 (315)
T KOG0820|consen  123 --RFDGCVSNL  131 (315)
T ss_pred             --ccceeeccC
Confidence              589988743

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.63  E-value=2e-07  Score=74.21  Aligned_cols=86  Identities=22%  Similarity=0.307  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~  189 (217)
                      .....++...  .+++|||||+++|+.+..++..  .+.+++.+|.+++..+.|++.+...|+. .+++++.+|+.+. +
T Consensus        69 ~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-~~I~~~~G~a~e~L~  145 (247)
T PLN02589         69 QFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-HKIDFREGPALPVLD  145 (247)
T ss_pred             HHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeccHHHHHH
Confidence            3333344444  7889999999999999988863  3568999999999999999999999986 7999999998664 2


Q ss_pred             -C-C----CCceeEEEec
Q 027913          190 -V-S----DASVDAVVGT  201 (217)
Q Consensus       190 -~-~----~~sfD~V~~~  201 (217)
                       + .    .++||+|+.-
T Consensus       146 ~l~~~~~~~~~fD~iFiD  163 (247)
T PLN02589        146 QMIEDGKYHGTFDFIFVD  163 (247)
T ss_pred             HHHhccccCCcccEEEec
Confidence             1 1    3689999863

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2e-07  Score=74.23  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++... .++..|||||+|.|.++..+++ .+..|+++|+++.++...++.....    .+++++.+|+...+++.-
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~~~----~n~~vi~~DaLk~d~~~l   93 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLE-RAARVTAIEIDRRLAEVLKERFAPY----DNLTVINGDALKFDFPSL   93 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHh-hcCeEEEEEeCHHHHHHHHHhcccc----cceEEEeCchhcCcchhh
Confidence            445566555 4578999999999999999984 4567999999999999999987522    689999999999987753


Q ss_pred             -ceeEEEecccccccC
Q 027913          194 -SVDAVVGTLVLCSVK  208 (217)
Q Consensus       194 -sfD~V~~~~~l~~~~  208 (217)
                       .++.|+++ ..+++.
T Consensus        94 ~~~~~vVaN-lPY~Is  108 (259)
T COG0030          94 AQPYKVVAN-LPYNIS  108 (259)
T ss_pred             cCCCEEEEc-CCCccc
Confidence             56777754 344443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.61  E-value=1.2e-07  Score=74.38  Aligned_cols=79  Identities=24%  Similarity=0.245  Sum_probs=68.4

Q ss_pred             CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913          127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL  202 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~  202 (217)
                      ..+||||||.|.++..+|+ .+...++|||+....+..+.+++.+.++  .|+.+++.|+..+-   +++++.|-|...+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l--~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL--KNLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            5899999999999999996 7888999999999999999999999998  49999999998763   4556999998876


Q ss_pred             ccccc
Q 027913          203 VLCSV  207 (217)
Q Consensus       203 ~l~~~  207 (217)
                      -=.|.
T Consensus       128 PDPWp  132 (227)
T COG0220         128 PDPWP  132 (227)
T ss_pred             CCCCC
Confidence            54443

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=3.3e-07  Score=78.57  Aligned_cols=73  Identities=26%  Similarity=0.274  Sum_probs=64.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC---CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~sfD~V~~  200 (217)
                      ++.+|||+=||.|.++..++ ....+|+|+|+++++++.|+++++..++  .|+.|+.++++++..   ....+|+|+.
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i--~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGI--DNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            67899999999999999998 5667999999999999999999999998  579999999998852   2357899985

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.61  E-value=4.6e-07  Score=76.08  Aligned_cols=72  Identities=22%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      +...+++.+...+..|||+-||.|.++..++ ....+|+|||+++++++.|++++...++  .|++|+.++++++
T Consensus       185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i--~n~~f~~~~~~~~  256 (352)
T PF05958_consen  185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI--DNVEFIRGDAEDF  256 (352)
T ss_dssp             HHHHHHHHCTT-TTEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHC
T ss_pred             HHHHHHHHhhcCCCcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC--CcceEEEeeccch
Confidence            3333444444334489999999999999998 5567899999999999999999999998  6999999887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00417 speE spermidine synthase

Probab=98.57  E-value=4.2e-07  Score=73.66  Aligned_cols=79  Identities=16%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEecccccc-cCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l-~~~~~sfD~V~~  200 (217)
                      .+++||+||||+|..+..+++.. ..+++++|+++++++.+++.+...+  +...+++++.+|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            56699999999999998887654 4689999999999999999875432  2235788888887653 222478999998


Q ss_pred             ccc
Q 027913          201 TLV  203 (217)
Q Consensus       201 ~~~  203 (217)
                      ...
T Consensus       152 D~~  154 (270)
T TIGR00417       152 DST  154 (270)
T ss_pred             eCC
Confidence            554

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.57  E-value=1.2e-07  Score=73.69  Aligned_cols=80  Identities=18%  Similarity=0.233  Sum_probs=62.0

Q ss_pred             CCeEEEECCcCCcchHhhhh-CC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----ccCCCCceeEE
Q 027913          126 AKKVLEIGIGTGPNLKYYAA-DT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAV  198 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l~~~~~sfD~V  198 (217)
                      ..+|||||||.|.....+.+ .+  +..+.++|.|+.+++..+++.....   .++...+.|+..    -|...+++|+|
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDII  148 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceE
Confidence            34899999999999888876 33  3689999999999999998754332   455666666543    24677899999


Q ss_pred             EecccccccC
Q 027913          199 VGTLVLCSVK  208 (217)
Q Consensus       199 ~~~~~l~~~~  208 (217)
                      +++++|.-++
T Consensus       149 t~IFvLSAi~  158 (264)
T KOG2361|consen  149 TLIFVLSAIH  158 (264)
T ss_pred             EEEEEEeccC
Confidence            9999998875

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.55  E-value=1.5e-07  Score=69.98  Aligned_cols=72  Identities=21%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCc-eeEEEec
Q 027913          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDAS-VDAVVGT  201 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~s-fD~V~~~  201 (217)
                      .|||+.||.|..+..+++. ..+|++||+++..++.|+.++.-.|+. ++++|+++|..++.  +.... ||+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-G-GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6999999999999999954 568999999999999999999999976 79999999998763  22222 8999863

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.54  E-value=3.7e-07  Score=70.05  Aligned_cols=81  Identities=28%  Similarity=0.275  Sum_probs=62.8

Q ss_pred             eEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--------CCCceeEE
Q 027913          128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--------SDASVDAV  198 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--------~~~sfD~V  198 (217)
                      +|||||+|||.++.++++ .+.....-.|+.+..+...+..+.+.+++ .-..-+..|+..-++        ..++||+|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-NVRPPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-ccCCCeEeecCCCCCccccccccCCCCccee
Confidence            599999999999999997 45667888999999888888888877764 122345666665532        24589999


Q ss_pred             EecccccccCC
Q 027913          199 VGTLVLCSVKD  209 (217)
Q Consensus       199 ~~~~~l~~~~d  209 (217)
                      ++.+++|-.+.
T Consensus       107 ~~~N~lHI~p~  117 (204)
T PF06080_consen  107 FCINMLHISPW  117 (204)
T ss_pred             eehhHHHhcCH
Confidence            99999998763

The function of this family is unknown.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.53  E-value=2.2e-07  Score=71.70  Aligned_cols=85  Identities=19%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ...++||.|+|-|+.+..+......+|-.+|+.+.+++.|++.+....-  .-.++.+..++++..+.+.||+|++-+++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~--~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP--RVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC--CEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC--CcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            4578999999999999988756667999999999999999987644221  34678888888885455799999999999


Q ss_pred             cccCChh
Q 027913          205 CSVKDVD  211 (217)
Q Consensus       205 ~~~~d~~  211 (217)
                      .|++|.+
T Consensus       133 ghLTD~d  139 (218)
T PF05891_consen  133 GHLTDED  139 (218)
T ss_dssp             GGS-HHH
T ss_pred             ccCCHHH
Confidence            9998754

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=2.2e-06  Score=64.02  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++-+||||||+|..+..+++  .+...+.++|+|+.+++..++.++-.+.   ++..++.|+..- +..++.|+++.+
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~-l~~~~VDvLvfN  117 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSG-LRNESVDVLVFN  117 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhh-hccCCccEEEEC
Confidence            577899999999999888886  4556899999999999999999888774   678899988665 344899999865

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.48  E-value=4.7e-06  Score=66.88  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913          109 AEVAGYKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA  183 (217)
Q Consensus       109 ~~~~~~~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  183 (217)
                      ..+.+.+.+.+..+.  +.+.+||||.||.|........ .+.  .++...|.|+..++..++.+++.|+. +-++|.++
T Consensus       117 ~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-~i~~f~~~  195 (311)
T PF12147_consen  117 VHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-DIARFEQG  195 (311)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-cceEEEec
Confidence            334455555555554  5778999999999998777664 333  58999999999999999999999995 44599999


Q ss_pred             cccccc-C--CCCceeEEEecccccccCChh
Q 027913          184 VGEAIP-V--SDASVDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       184 d~~~l~-~--~~~sfD~V~~~~~l~~~~d~~  211 (217)
                      |+-+.. +  -+...++++.+..++.++|-+
T Consensus       196 dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~  226 (311)
T PF12147_consen  196 DAFDRDSLAALDPAPTLAIVSGLYELFPDND  226 (311)
T ss_pred             CCCCHhHhhccCCCCCEEEEecchhhCCcHH
Confidence            986542 1  134579999999999999843

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.46  E-value=2.3e-07  Score=73.27  Aligned_cols=80  Identities=19%  Similarity=0.152  Sum_probs=62.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ...++||||+|.|..+..++ ..-.+|++.|.|+.|..+.+++    |.     +  +.|..++.-.+.+||+|.|.++|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k----g~-----~--vl~~~~w~~~~~~fDvIscLNvL  161 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK----GF-----T--VLDIDDWQQTDFKFDVISCLNVL  161 (265)
T ss_pred             cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC----CC-----e--EEehhhhhccCCceEEEeehhhh
Confidence            45689999999999999997 4456799999999997766653    42     2  33444444345689999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      ..-.+|...|++
T Consensus       162 DRc~~P~~LL~~  173 (265)
T PF05219_consen  162 DRCDRPLTLLRD  173 (265)
T ss_pred             hccCCHHHHHHH
Confidence            999999888865

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.45  E-value=1.4e-06  Score=63.65  Aligned_cols=79  Identities=25%  Similarity=0.338  Sum_probs=60.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCC-CCeEEEecccccccCCCCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      .+...|+|+|||.|+++..++.     .++.+|++||.++..++.+.++.++.+... .++.+..++....+. ....++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCeE
Confidence            4778999999999999999987     678899999999999999999988776221 466777776655432 455677


Q ss_pred             EEeccc
Q 027913          198 VVGTLV  203 (217)
Q Consensus       198 V~~~~~  203 (217)
                      ++..++
T Consensus       103 ~vgLHa  108 (141)
T PF13679_consen  103 LVGLHA  108 (141)
T ss_pred             EEEeec
Confidence            775443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1.2e-06  Score=66.89  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcC--------CCCCCeEEEecccccccCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .++.++||+|.|+|+++.-++.   ..+..++|||.-++.++++++++.+.-        +...++.++++|.....-+.
T Consensus        81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~  160 (237)
T KOG1661|consen   81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ  160 (237)
T ss_pred             ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence            4899999999999999766653   556667999999999999999986543        33457889999999987677


Q ss_pred             CceeEEEeccccccc
Q 027913          193 ASVDAVVGTLVLCSV  207 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~  207 (217)
                      .+||.|.+-..-.-+
T Consensus       161 a~YDaIhvGAaa~~~  175 (237)
T KOG1661|consen  161 APYDAIHVGAAASEL  175 (237)
T ss_pred             CCcceEEEccCcccc
Confidence            899999987554443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.43  E-value=5.8e-06  Score=63.01  Aligned_cols=74  Identities=31%  Similarity=0.353  Sum_probs=61.0

Q ss_pred             CeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .+++|||+|.|.-+..++- .+..+++.+|....-+...+....+.++  +|++++...+++ +.....||+|++-.+
T Consensus        50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L--~nv~v~~~R~E~-~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen   50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL--SNVEVINGRAEE-PEYRESFDVVTARAV  124 (184)
T ss_dssp             SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---SSEEEEES-HHH-TTTTT-EEEEEEESS
T ss_pred             ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC--CCEEEEEeeecc-cccCCCccEEEeehh
Confidence            3899999999988877764 6788999999999999999999999999  699999999999 445689999998654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.42  E-value=1.1e-06  Score=64.74  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCcee
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD  196 (217)
                      ..++.|||+|.|||-+++.+.+.  ....++.+|.|++.+....+..       +.+.++.+|+..+.     ..+..||
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-------p~~~ii~gda~~l~~~l~e~~gq~~D  119 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-------PGVNIINGDAFDLRTTLGEHKGQFFD  119 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------CCccccccchhhHHHHHhhcCCCeee
Confidence            47789999999999999999863  3468999999999999998886       45678999987764     5667899


Q ss_pred             EEEecccccccC
Q 027913          197 AVVGTLVLCSVK  208 (217)
Q Consensus       197 ~V~~~~~l~~~~  208 (217)
                      .|+|..-+-.++
T Consensus       120 ~viS~lPll~~P  131 (194)
T COG3963         120 SVISGLPLLNFP  131 (194)
T ss_pred             eEEeccccccCc
Confidence            999988777765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.40  E-value=1.2e-06  Score=72.02  Aligned_cols=74  Identities=26%  Similarity=0.336  Sum_probs=65.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sfD~V~~  200 (217)
                      .++..|||==||||.++.... ..|..++|+|++..|++-|+.+++..++  ....++.. |+..+|+++.+||.|++
T Consensus       196 ~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i--~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGI--EDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCc--CceeEEEecccccCCCCCCccceEEe
Confidence            478899999999999988865 7789999999999999999999999887  46666666 99999999889999986

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.36  E-value=1.2e-06  Score=77.05  Aligned_cols=82  Identities=23%  Similarity=0.234  Sum_probs=69.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~  200 (217)
                      .....+||||||.|.++..+|. .+...++|+|+...-+..+.++....++  .|+.++..|++.+.  ++++++|.|+.
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            3567899999999999999886 6788999999999999999998888888  69999999886553  77889999998


Q ss_pred             ccccccc
Q 027913          201 TLVLCSV  207 (217)
Q Consensus       201 ~~~l~~~  207 (217)
                      ++-=.|.
T Consensus       424 ~FPDPWp  430 (506)
T PRK01544        424 LFPDPWI  430 (506)
T ss_pred             ECCCCCC
Confidence            7765444

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.35  E-value=1e-06  Score=74.63  Aligned_cols=74  Identities=22%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             CCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          126 AKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      +.+|||++||+|..+..++... ...|+++|+++.+++.++++++..++  .++++...|+..+....+.||+|+..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~--~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL--ENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            4689999999999999987543 35899999999999999999988887  46789999997753214679999874

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.32  E-value=3.7e-06  Score=67.85  Aligned_cols=84  Identities=21%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+.+++.+. .++..|||||+|.|.++..+++.. .+++++|+++.+++..++++...    ++++++.+|+..+....
T Consensus        18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~----~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASN----PNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTC----SSEEEEES-TTTSCGGG
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhc----ccceeeecchhccccHH
Confidence            4444555554 478899999999999999998544 89999999999999999876521    68999999999987554


Q ss_pred             ---CceeEEEecc
Q 027913          193 ---ASVDAVVGTL  202 (217)
Q Consensus       193 ---~sfD~V~~~~  202 (217)
                         +....|+++.
T Consensus        93 ~~~~~~~~vv~Nl  105 (262)
T PF00398_consen   93 LLKNQPLLVVGNL  105 (262)
T ss_dssp             HCSSSEEEEEEEE
T ss_pred             hhcCCceEEEEEe
Confidence               3455666543

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.31  E-value=6e-06  Score=67.05  Aligned_cols=96  Identities=22%  Similarity=0.211  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc-
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-  186 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~-  186 (217)
                      +.....++-.++. ..+.+|||+|+|.|.-+-.+..  ..-.+++++|.|+.|++.++..+...... ....+...... 
T Consensus        18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~   96 (274)
T PF09243_consen   18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN-RNAEWRRVLYRD   96 (274)
T ss_pred             HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-ccchhhhhhhcc
Confidence            3333344443433 4778999999999976544443  22357999999999999999987554321 11111111111 


Q ss_pred             cccCCCCceeEEEecccccccCC
Q 027913          187 AIPVSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       187 ~l~~~~~sfD~V~~~~~l~~~~d  209 (217)
                      ..++  ...|+|++.++|-.+++
T Consensus        97 ~~~~--~~~DLvi~s~~L~EL~~  117 (274)
T PF09243_consen   97 FLPF--PPDDLVIASYVLNELPS  117 (274)
T ss_pred             cccC--CCCcEEEEehhhhcCCc
Confidence            1222  23499999999999987

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=73.38  Aligned_cols=93  Identities=27%  Similarity=0.306  Sum_probs=82.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++..++|+|||-|...++++......++|+|.++..+.++.......++. .+-.++.+|+...|++++.||.+.+..+
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhh-hhcceehhhhhcCCCCccccCcEEEEee
Confidence            466789999999999999998777789999999999999999888777775 4556689999999999999999999999


Q ss_pred             ccccCChhhhhcCC
Q 027913          204 LCSVKDVDMTLQAP  217 (217)
Q Consensus       204 l~~~~d~~~~L~e~  217 (217)
                      .+|.+++..+++|+
T Consensus       188 ~~~~~~~~~~y~Ei  201 (364)
T KOG1269|consen  188 VCHAPDLEKVYAEI  201 (364)
T ss_pred             cccCCcHHHHHHHH
Confidence            99999999998874

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.27  E-value=4.9e-06  Score=63.46  Aligned_cols=76  Identities=17%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c---CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P---VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~---~~~~sfD~V~~  200 (217)
                      .+.++||+-||+|.++...++....+|+.||.++..++..+++++..+.. .++..+..|+... +   .....||+|+.
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCC-cceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            88999999999999999888777789999999999999999999988875 4689999986443 2   24689999986


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      -
T Consensus       121 D  121 (183)
T PF03602_consen  121 D  121 (183)
T ss_dssp             -
T ss_pred             C
Confidence            3

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=6.5e-06  Score=68.17  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +.++++... ++.+|||+=+|-|.++..+++.....|+++|+||..++..+++++-+++. ..+..+++|...++..-+.
T Consensus       179 R~Rva~~v~-~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-~~v~~i~gD~rev~~~~~~  256 (341)
T COG2520         179 RARVAELVK-EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-GRVEPILGDAREVAPELGV  256 (341)
T ss_pred             HHHHHhhhc-CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-ceeeEEeccHHHhhhcccc
Confidence            334444443 69999999999999999998655556999999999999999999999986 4599999999998755588


Q ss_pred             eeEEEecccc
Q 027913          195 VDAVVGTLVL  204 (217)
Q Consensus       195 fD~V~~~~~l  204 (217)
                      +|-|++...-
T Consensus       257 aDrIim~~p~  266 (341)
T COG2520         257 ADRIIMGLPK  266 (341)
T ss_pred             CCEEEeCCCC
Confidence            9999987654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=6.9e-07  Score=71.23  Aligned_cols=84  Identities=19%  Similarity=0.247  Sum_probs=66.8

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+++++... .+..+||+|||.|.++.   ..+...++|.|++...+..+++.        .......+|+..+|+.+.+
T Consensus        36 v~qfl~~~~-~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~--------~~~~~~~ad~l~~p~~~~s  103 (293)
T KOG1331|consen   36 VRQFLDSQP-TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS--------GGDNVCRADALKLPFREES  103 (293)
T ss_pred             HHHHHhccC-CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC--------CCceeehhhhhcCCCCCCc
Confidence            344444443 57889999999997553   24666799999999998888864        1226889999999999999


Q ss_pred             eeEEEecccccccCCh
Q 027913          195 VDAVVGTLVLCSVKDV  210 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~  210 (217)
                      ||.+++..++||+...
T Consensus       104 ~d~~lsiavihhlsT~  119 (293)
T KOG1331|consen  104 FDAALSIAVIHHLSTR  119 (293)
T ss_pred             cccchhhhhhhhhhhH
Confidence            9999999999999754

>PLN02823 spermine synthase

Probab=98.23  E-value=6.5e-06  Score=68.51  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+++||.||+|.|..++.+++.. ..+++.||+++++++.+++.+...  ++..++++++.+|+... ....++||+|+
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi  181 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII  181 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence            367899999999999999888744 468999999999999999987432  22336899999998775 33457899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +-
T Consensus       182 ~D  183 (336)
T PLN02823        182 GD  183 (336)
T ss_pred             ec
Confidence            75

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.20  E-value=2e-06  Score=66.25  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCcCCcc----hHhhhh---C-C--CCeEEEecCCHHHHHHHHHHHH--------------H-----c--C
Q 027913          124 GKAKKVLEIGIGTGPN----LKYYAA---D-T--DVQVLGVDPNRKMEKYAQTAAV--------------A-----A--G  172 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~----~~~l~~---~-~--~~~v~gvD~s~~~l~~a~~~~~--------------~-----~--~  172 (217)
                      ....+|+-+||++|.-    +..+.+   . .  ..+++|+|+|+.+++.|++-.-              +     .  +
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            3567999999999942    222222   1 2  3589999999999999984320              0     0  0


Q ss_pred             ------CCCCCeEEEecccccccCCCCceeEEEecccccccCCh
Q 027913          173 ------LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       173 ------~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                            +. .+|.|...|+.+.+...+.||+|+|-++|-++.+.
T Consensus       110 ~~v~~~lr-~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~  152 (196)
T PF01739_consen  110 YRVKPELR-KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE  152 (196)
T ss_dssp             TTE-HHHH-TTEEEEE--TT-S------EEEEEE-SSGGGS-HH
T ss_pred             eeEChHHc-CceEEEecccCCCCcccCCccEEEecCEEEEeCHH
Confidence                  11 46899999998843455789999999999999754

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.20  E-value=8.6e-06  Score=66.17  Aligned_cols=76  Identities=25%  Similarity=0.265  Sum_probs=61.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c--CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~sfD~V~~  200 (217)
                      .+++|||+=|=||.++.+.+.....+|+.||.|..+++.+++++.-+++...+++|++.|+.+. .  -..++||+||+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            7889999999999999987766666899999999999999999999998767899999998763 1  13468999997

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.17  E-value=8.3e-06  Score=68.92  Aligned_cols=76  Identities=20%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ++++|||+=|=||.++.+.+.....+||.||.|...++.|+++++-+++...++.|+++|+-++-    -...+||+|+.
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            59999999999999999988655559999999999999999999999987678999999987652    23358999986

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.16  E-value=1.4e-05  Score=73.01  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             CCCeEEEECCcCCcchHhhhh-----CC--------------------------------------CCeEEEecCCHHHH
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-----DT--------------------------------------DVQVLGVDPNRKME  161 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-----~~--------------------------------------~~~v~gvD~s~~~l  161 (217)
                      ++..++|-+||+|.++...+.     .+                                      ...++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            568999999999999866542     01                                      12699999999999


Q ss_pred             HHHHHHHHHcCCCCCCeEEEecccccccCC--CCceeEEEecc
Q 027913          162 KYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTL  202 (217)
Q Consensus       162 ~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~sfD~V~~~~  202 (217)
                      +.|++++...|+. ..+++.++|+.+++.+  .++||+|+++-
T Consensus       270 ~~A~~N~~~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtNP  311 (702)
T PRK11783        270 QAARKNARRAGVA-ELITFEVKDVADLKNPLPKGPTGLVISNP  311 (702)
T ss_pred             HHHHHHHHHcCCC-cceEEEeCChhhcccccccCCCCEEEECC
Confidence            9999999999986 5799999999988643  35799999874

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.16  E-value=2.3e-06  Score=65.64  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=45.9

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+.  ++...|-|+|||.+.++..+.  ....|.-.|+-..                 +-.++.+|+..+|++++
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva~-----------------n~~Vtacdia~vPL~~~  121 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVAP-----------------NPRVTACDIANVPLEDE  121 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------------STTEEES-TTS-S--TT
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccCC-----------------CCCEEEecCccCcCCCC
Confidence            33444444  345789999999999886653  3467999998643                 23488899999999999


Q ss_pred             ceeEEEecccccccCChhhhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++|++|+..+|... |....|+|
T Consensus       122 svDv~VfcLSLMGT-n~~~fi~E  143 (219)
T PF05148_consen  122 SVDVAVFCLSLMGT-NWPDFIRE  143 (219)
T ss_dssp             -EEEEEEES---SS--HHHHHHH
T ss_pred             ceeEEEEEhhhhCC-CcHHHHHH
Confidence            99999998888765 44445544

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.15  E-value=1.8e-05  Score=61.47  Aligned_cols=86  Identities=24%  Similarity=0.306  Sum_probs=68.4

Q ss_pred             HHHHHHHHhc-----CC-CCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913          114 YKSQLFDNLR-----GK-AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (217)
Q Consensus       114 ~~~~i~~~~~-----~~-~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  186 (217)
                      |.+++++.+.     .. +.+++|||+|.|.-+..++ -.+..+++.+|....-+...++...+.++  .|++++.+-++
T Consensus        50 ~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L--~nv~i~~~RaE  127 (215)
T COG0357          50 WQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL--ENVEIVHGRAE  127 (215)
T ss_pred             HHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC--CCeEEehhhHh
Confidence            4445555443     12 6899999999998887766 36777899999999999999999999998  68999999999


Q ss_pred             cccCCCCc-eeEEEecc
Q 027913          187 AIPVSDAS-VDAVVGTL  202 (217)
Q Consensus       187 ~l~~~~~s-fD~V~~~~  202 (217)
                      ++.-. .. ||+|++-.
T Consensus       128 ~~~~~-~~~~D~vtsRA  143 (215)
T COG0357         128 EFGQE-KKQYDVVTSRA  143 (215)
T ss_pred             hcccc-cccCcEEEeeh
Confidence            98532 23 99999754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.14  E-value=8.1e-06  Score=63.30  Aligned_cols=73  Identities=21%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             EEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc-eeEEEeccc
Q 027913          129 VLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS-VDAVVGTLV  203 (217)
Q Consensus       129 vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s-fD~V~~~~~  203 (217)
                      |.||||..|++..++.+. ....++++|+++.-++.|++++...++. .++++..+|.... ++.+. .|+|+...|
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-~~i~~rlgdGL~~-l~~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLE-DRIEVRLGDGLEV-LKPGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-T-TTEEEEE-SGGGG---GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCc-ccEEEEECCcccc-cCCCCCCCEEEEecC
Confidence            689999999999999864 3457999999999999999999999987 7899999996553 23333 788887654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.14  E-value=2.6e-06  Score=66.02  Aligned_cols=91  Identities=13%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHH-------HHcCCCCCCeEEEecc
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA-------VAAGLPLTNFKFLQAV  184 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~v~~~~~d  184 (217)
                      ....+++.+. .++...+|||||.|......+- ....+.+|||+.+...+.|+...       +..|....++++..+|
T Consensus        30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            3444555555 5788999999999998877664 34456999999999888776543       2334444678899999


Q ss_pred             cccccCCC---CceeEEEecccc
Q 027913          185 GEAIPVSD---ASVDAVVGTLVL  204 (217)
Q Consensus       185 ~~~l~~~~---~sfD~V~~~~~l  204 (217)
                      +.+.++..   ...|+|++++..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~  132 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC  132 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT
T ss_pred             ccccHhHhhhhcCCCEEEEeccc
Confidence            87654211   347899987653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.14  E-value=1.5e-05  Score=66.62  Aligned_cols=78  Identities=21%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-C----CC----------------------------C-------eEEEecCCHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-D----TD----------------------------V-------QVLGVDPNRKMEKY  163 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~----~~----------------------------~-------~v~gvD~s~~~l~~  163 (217)
                      .++..++|--||+|.+....+- .    ||                            .       .++|+|+++.+++.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            4667999999999999876653 1    11                            0       37799999999999


Q ss_pred             HHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       164 a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      |+.++...|+. +.++|.++|+..++-+-+.+|+||++-
T Consensus       270 Ak~NA~~AGv~-d~I~f~~~d~~~l~~~~~~~gvvI~NP  307 (381)
T COG0116         270 AKANARAAGVG-DLIEFKQADATDLKEPLEEYGVVISNP  307 (381)
T ss_pred             HHHHHHhcCCC-ceEEEEEcchhhCCCCCCcCCEEEeCC
Confidence            99999999997 789999999999864337899999864

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.11  E-value=5.4e-06  Score=71.12  Aligned_cols=62  Identities=24%  Similarity=0.294  Sum_probs=55.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ..++.+||+-||||.+...++ .....|+||+++++.++.|++++...|+  .|.+|+++-++++
T Consensus       382 ~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--sNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI--SNATFIVGQAEDL  443 (534)
T ss_pred             CCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc--cceeeeecchhhc
Confidence            467899999999999999987 4556899999999999999999999998  6999999966654

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.11  E-value=1e-05  Score=58.94  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             eEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913          128 KVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  187 (217)
                      ++||||||.|.++..+++ .+..+++++|+++.+++.+++++...++  .++.++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~--~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL--PNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC--CcEEEEEeeeeC
Confidence            489999999999988875 3345899999999999999999988776  357777665543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=98.10  E-value=2.2e-05  Score=61.96  Aligned_cols=81  Identities=14%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      +++.+|+|||||.-.++..+.. .++..|+|+|++..+++.....+...++   +.++...|...-+ +....|+.+..-
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK  179 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV---PHDARVRDLLSDP-PKEPADLALLLK  179 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TTTSH-TTSEESEEEEET
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC---CcceeEeeeeccC-CCCCcchhhHHH
Confidence            3588999999999999887775 4567999999999999999999888885   5677777876654 446799999877


Q ss_pred             cccccC
Q 027913          203 VLCSVK  208 (217)
Q Consensus       203 ~l~~~~  208 (217)
                      +++.+.
T Consensus       180 ~lp~le  185 (251)
T PF07091_consen  180 TLPCLE  185 (251)
T ss_dssp             -HHHHH
T ss_pred             HHHHHH
Confidence            777664

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.06  E-value=1.5e-05  Score=59.93  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      ....+.|+|+|+|.++...+ +...+|++|+.+|.-.+.|++++.-.|.  .|++++.+|+....|  ...|+|+|-
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa-~~A~rViAiE~dPk~a~~a~eN~~v~g~--~n~evv~gDA~~y~f--e~ADvvicE  103 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAA-HAAERVIAIEKDPKRARLAEENLHVPGD--VNWEVVVGDARDYDF--ENADVVICE  103 (252)
T ss_pred             hhhceeeccCCcchHHHHHH-hhhceEEEEecCcHHHHHhhhcCCCCCC--cceEEEecccccccc--cccceeHHH
Confidence            44789999999998887665 4467899999999999999999866776  699999999999887  458888874

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.03  E-value=4.7e-06  Score=67.80  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=60.7

Q ss_pred             CCCeEEEECCcCCcc----hHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHH-----------------------cC
Q 027913          125 KAKKVLEIGIGTGPN----LKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVA-----------------------AG  172 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~----~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~  172 (217)
                      ...+|+-.||++|.-    +..+.+.     ...+++|+|+|+.+++.|++-.-.                       .+
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            347999999999942    2223221     135899999999999999865200                       00


Q ss_pred             -------CCCCCeEEEecccccccCC-CCceeEEEecccccccCCh
Q 027913          173 -------LPLTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       173 -------~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~l~~~~d~  210 (217)
                             +. ..|.|.+.|+...+++ .+.||+|+|.++|.|+.+.
T Consensus       195 ~~~v~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~  239 (287)
T PRK10611        195 LVRVRQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT  239 (287)
T ss_pred             eEEEChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence                   11 4678888998775543 5789999999999999653

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.01  E-value=1.7e-05  Score=60.01  Aligned_cols=83  Identities=22%  Similarity=0.265  Sum_probs=68.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      -.+++|||+|+|+|......++.....|+..|+.+..+...+-+.+.++.   ++.+...|...   .+..||+|+...+
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g---~~~~~Dl~LagDl  151 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG---SPPAFDLLLAGDL  151 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC---CCcceeEEEeece
Confidence            47899999999999888777766667899999999999999999888885   67888887655   4578999999998


Q ss_pred             ccccCChhh
Q 027913          204 LCSVKDVDM  212 (217)
Q Consensus       204 l~~~~d~~~  212 (217)
                      ++.-+.-.+
T Consensus       152 fy~~~~a~~  160 (218)
T COG3897         152 FYNHTEADR  160 (218)
T ss_pred             ecCchHHHH
Confidence            876554333

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.97  E-value=3.4e-05  Score=66.04  Aligned_cols=83  Identities=13%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccccc
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCS  206 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~  206 (217)
                      .++|-+|||.-.+...+-+.....++-+|+|+..++....+....-   ....+...|+..+.|++++||+|+.-..+++
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~fedESFdiVIdkGtlDa  126 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLVFEDESFDIVIDKGTLDA  126 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhccCCCcceeEEEecCcccc
Confidence            4899999999999888877777899999999999988887764221   4678999999999999999999999999998


Q ss_pred             cCChhh
Q 027913          207 VKDVDM  212 (217)
Q Consensus       207 ~~d~~~  212 (217)
                      +-..+.
T Consensus       127 l~~de~  132 (482)
T KOG2352|consen  127 LFEDED  132 (482)
T ss_pred             ccCCch
Confidence            855443

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.97  E-value=1.3e-05  Score=63.16  Aligned_cols=79  Identities=18%  Similarity=0.229  Sum_probs=57.7

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..|++.+.  .....|-|+|||.+.++.    .....|+..|+-..                 +-+++.+|+..+|++++
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------------~~~V~~cDm~~vPl~d~  227 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------------NERVIACDMRNVPLEDE  227 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeecC-----------------CCceeeccccCCcCccC
Confidence            34455544  456689999999997654    23357888888533                 45789999999999999


Q ss_pred             ceeEEEecccccccCChhhhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +.|++|+..+|.-- |...+++|
T Consensus       228 svDvaV~CLSLMgt-n~~df~kE  249 (325)
T KOG3045|consen  228 SVDVAVFCLSLMGT-NLADFIKE  249 (325)
T ss_pred             cccEEEeeHhhhcc-cHHHHHHH
Confidence            99999988777643 45555554

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.96  E-value=3.6e-05  Score=61.94  Aligned_cols=87  Identities=15%  Similarity=0.125  Sum_probs=61.3

Q ss_pred             CCCeEEEECCcCCcc----hHhhhhC------CCCeEEEecCCHHHHHHHHHHHHH-----cCCC---------------
Q 027913          125 KAKKVLEIGIGTGPN----LKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVA-----AGLP---------------  174 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~----~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~-----~~~~---------------  174 (217)
                      ..-+|+-+||++|.-    +..+.+.      ...+++|.|++..+++.|+.-.-.     .+++               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            367999999999942    2223232      246999999999999999843211     1110               


Q ss_pred             -------CCCeEEEecccccccCCCCceeEEEecccccccCChh
Q 027913          175 -------LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       175 -------~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~  211 (217)
                             ...|.|...|+..-++..+.||+|+|-+||-++..+.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~  219 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEET  219 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHH
Confidence                   1357788888776654457899999999999997653

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=8.8e-05  Score=59.00  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=70.6

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--  190 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--  190 (217)
                      ..|+..+. .|+.+|||-|.|+|.++.++++  .+-.+++-.|.-+.-.+.|.+-+++.++. +++++.+-|+...-|  
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~-~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG-DNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-cceEEEEeecccCCccc
Confidence            34555555 6999999999999999999987  45568999999999999999999999987 899999999987653  


Q ss_pred             CCCceeEEEe
Q 027913          191 SDASVDAVVG  200 (217)
Q Consensus       191 ~~~sfD~V~~  200 (217)
                      .+..+|.|+.
T Consensus       174 ks~~aDaVFL  183 (314)
T KOG2915|consen  174 KSLKADAVFL  183 (314)
T ss_pred             cccccceEEE
Confidence            4578999875

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.95  E-value=2.3e-05  Score=61.30  Aligned_cols=46  Identities=26%  Similarity=0.269  Sum_probs=40.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAV  169 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~  169 (217)
                      ..++.+|||||..|.++..+++..+ ..+.|+||.+..++.|++.++
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            4788999999999999999998544 579999999999999998874

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.95  E-value=8.7e-05  Score=61.36  Aligned_cols=97  Identities=8%  Similarity=0.040  Sum_probs=65.1

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ....|...+ +++..++|+|||.|.-+..+.+     .....++++|+|.++++.+.+++....++.-.+.-+++|..+.
T Consensus        66 ~~~~Ia~~i-~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        66 HSSDIAASI-PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            333444444 3566899999999988766554     2246799999999999999999974444322444588888653


Q ss_pred             ----cC--CCCceeEEEecc-cccccCChh
Q 027913          189 ----PV--SDASVDAVVGTL-VLCSVKDVD  211 (217)
Q Consensus       189 ----~~--~~~sfD~V~~~~-~l~~~~d~~  211 (217)
                          +-  ......+|+... ++.+++..+
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~e  174 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPE  174 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHH
Confidence                21  123456666654 888886544

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.92  E-value=7.1e-05  Score=56.75  Aligned_cols=76  Identities=20%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCC-CceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD-ASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~-~sfD~V~~~  201 (217)
                      .+.++||+=+|+|.++...+......++.||.+...+...+++++..++. .+++++..|+... + ... +.||+|+.=
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLE-GEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            78999999999999999988787889999999999999999999888865 6889999998754 1 222 259999863

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.92  E-value=3.6e-05  Score=63.59  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=55.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--------CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--CC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~  193 (217)
                      .++.+|||-+||+|.++..+.+        ....+++|+|+++.++..++-++.-.+....+..+..+|....+..  ..
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~  124 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ  124 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            3566899999999999877664        2567899999999999999987755554334456888886555432  47


Q ss_pred             ceeEEEeccccc
Q 027913          194 SVDAVVGTLVLC  205 (217)
Q Consensus       194 sfD~V~~~~~l~  205 (217)
                      .||+|+++--+-
T Consensus       125 ~~D~ii~NPPf~  136 (311)
T PF02384_consen  125 KFDVIIGNPPFG  136 (311)
T ss_dssp             -EEEEEEE--CT
T ss_pred             ccccccCCCCcc
Confidence            899999975443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.90  E-value=0.00011  Score=58.80  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=58.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccccc-CCCC-ceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAIP-VSDA-SVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l~-~~~~-sfD~V  198 (217)
                      ..+++||=||.|.|..++.+.+.+ ..+++.||+++.+++.+++.+....  +..++++++..|....- -... +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            478999999999999999998765 4689999999999999999875432  22368999999997752 2223 89999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       155 i~  156 (246)
T PF01564_consen  155 IV  156 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.87  E-value=7.5e-05  Score=60.66  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      +.+++||-||.|.|..++.+.+.. -.+++.||+++..++.+++.+....  ...++++.+..|..++- -...+||+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            344799999999999999999855 4689999999999999999986543  11268999999987763 2224899998


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +-
T Consensus       155 ~D  156 (282)
T COG0421         155 VD  156 (282)
T ss_pred             Ec
Confidence            63

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.86  E-value=7e-05  Score=65.09  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      .++.+|||+++|.|.-+..++...  ...++++|+++..++..++++...|+  .++.+...|...+. ...+.||.|+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~--~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV--SNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCchhhhhhhchhhcCeEE
Confidence            488999999999999888887632  35899999999999999999999998  58899999988763 3346799999

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.86  E-value=3.8e-05  Score=64.90  Aligned_cols=73  Identities=11%  Similarity=0.043  Sum_probs=61.0

Q ss_pred             CCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEe
Q 027913          126 AKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~  200 (217)
                      +.+|||+.||+|..+..++.+  ....|+++|+++..++.++++++..++  .+++++..|+..+-. ....||+|..
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~--~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV--ENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            368999999999999998865  336899999999999999999988876  478999999987632 2357999976

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.84  E-value=0.00014  Score=56.21  Aligned_cols=78  Identities=12%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .+.++.||||-.+++..++.+ .+...+++.|+++.-++.|.+++.+.++. .+++...+|....--.+..+|+|+...+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~-~~i~vr~~dgl~~l~~~d~~d~ivIAGM   94 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLS-ERIDVRLGDGLAVLELEDEIDVIVIAGM   94 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCc-ceEEEeccCCccccCccCCcCEEEEeCC
Confidence            455699999999999999986 56678999999999999999999999887 7899999998433233448999987664

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.83  E-value=8.3e-06  Score=69.99  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCH-----HHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR-----KMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      ..+||||||.|.++.+|.+ .+  |+.+.+.+     .+++.|.    +.|++   ..+-..-...|||++++||+|.|.
T Consensus       119 R~~LDvGcG~aSF~a~l~~-r~--V~t~s~a~~d~~~~qvqfal----eRGvp---a~~~~~~s~rLPfp~~~fDmvHcs  188 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLE-RN--VTTMSFAPNDEHEAQVQFAL----ERGVP---AMIGVLGSQRLPFPSNAFDMVHCS  188 (506)
T ss_pred             EEEEeccceeehhHHHHhh-CC--ceEEEcccccCCchhhhhhh----hcCcc---hhhhhhccccccCCccchhhhhcc
Confidence            4699999999999999983 33  44444444     3444444    44653   112222347899999999999998


Q ss_pred             cccccc
Q 027913          202 LVLCSV  207 (217)
Q Consensus       202 ~~l~~~  207 (217)
                      .++-..
T Consensus       189 rc~i~W  194 (506)
T PF03141_consen  189 RCLIPW  194 (506)
T ss_pred             cccccc
Confidence            766543

; GO: 0008168 methyltransferase activity

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.77  E-value=4.4e-05  Score=58.90  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=60.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ....|+|.-||.|..+..++ ..+..|++||+++.-+.-|+.+++-.|++ ++++|+++|+.++-    +....+|+|..
T Consensus        94 ~~~~iidaf~g~gGntiqfa-~~~~~VisIdiDPikIa~AkhNaeiYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFA-LQGPYVIAIDIDPVKIACARHNAEVYGVP-DRITFICGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             CcchhhhhhhcCCchHHHHH-HhCCeEEEEeccHHHHHHHhccceeecCC-ceeEEEechHHHHHHHHhhhhheeeeeec
Confidence            56789999999999888887 45667999999999999999999999998 69999999997752    33333556554

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.77  E-value=0.00022  Score=58.46  Aligned_cols=93  Identities=11%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----  189 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----  189 (217)
                      .+++.+. .++..++|.-+|.|.++..+++. +...|+|+|.++.+++.+++++...+   .++.++.++...+.     
T Consensus        11 Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~---~R~~~i~~nF~~l~~~l~~   87 (305)
T TIGR00006        11 EVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE---GRVVLIHDNFANFFEHLDE   87 (305)
T ss_pred             HHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC---CcEEEEeCCHHHHHHHHHh
Confidence            3445454 47789999999999999999864 34789999999999999999887653   58999999988764     


Q ss_pred             CCCCceeEEEecccc--cccCChhh
Q 027913          190 VSDASVDAVVGTLVL--CSVKDVDM  212 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l--~~~~d~~~  212 (217)
                      ....++|.|+.-..+  +.+.++++
T Consensus        88 ~~~~~vDgIl~DLGvSS~Qld~~~R  112 (305)
T TIGR00006        88 LLVTKIDGILVDLGVSSPQLDDPER  112 (305)
T ss_pred             cCCCcccEEEEeccCCHhhcCCCCC
Confidence            233579999986543  34445443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.74  E-value=0.00014  Score=52.43  Aligned_cols=76  Identities=38%  Similarity=0.478  Sum_probs=51.5

Q ss_pred             EEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc--ccCCC-CceeEEEeccc
Q 027913          129 VLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSD-ASVDAVVGTLV  203 (217)
Q Consensus       129 vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~--l~~~~-~sfD~V~~~~~  203 (217)
                      ++|+|||+|... .+..  ..+..++|+|+++.++..++........  ..+.+...|...  +++.. ..||++.....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL--GLVDFVVADALGGVLPFEDSASFDLVISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC--CceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence            999999999854 2222  2224799999999999985555433221  116888888876  77776 48999944444


Q ss_pred             cccc
Q 027913          204 LCSV  207 (217)
Q Consensus       204 l~~~  207 (217)
                      +++.
T Consensus       129 ~~~~  132 (257)
T COG0500         129 LHLL  132 (257)
T ss_pred             hhcC
Confidence            4443

>PRK00536 speE spermidine synthase; Provisional

Probab=97.73  E-value=0.00029  Score=56.63  Aligned_cols=74  Identities=12%  Similarity=-0.108  Sum_probs=57.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      +.+++||=||.|.|..++.+++.+. +|+-||+++++++.+++.+...  ++..++++++.. +.+  ...++||+|+.-
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            5789999999999999999998764 9999999999999999855332  344467777752 211  123689999964

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00013  Score=52.95  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=74.2

Q ss_pred             HHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC
Q 027913           97 ASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL  175 (217)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~  175 (217)
                      +..|.+.--.|-....+.+..++..+. .+..+.+|+|.|.|......++..-...+|+++++=.+.+++-..-..|+. 
T Consensus        43 aPafRR~cvPYVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~-  121 (199)
T KOG4058|consen   43 APAFRRLCVPYVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCA-  121 (199)
T ss_pred             hHHhheecccccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcc-
Confidence            333333333444445556666666666 567899999999999998887655568999999999999999888777776 


Q ss_pred             CCeEEEecccccccCCCCceeEEE
Q 027913          176 TNFKFLQAVGEAIPVSDASVDAVV  199 (217)
Q Consensus       176 ~~v~~~~~d~~~l~~~~~sfD~V~  199 (217)
                      +..+|..-|+-+..+.+-.+-+|+
T Consensus       122 k~trf~RkdlwK~dl~dy~~vviF  145 (199)
T KOG4058|consen  122 KSTRFRRKDLWKVDLRDYRNVVIF  145 (199)
T ss_pred             cchhhhhhhhhhccccccceEEEe
Confidence            678888888887776554444443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.71  E-value=0.00026  Score=57.79  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=48.3

Q ss_pred             CCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccc-c----cCCCCceeEE
Q 027913          126 AKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-I----PVSDASVDAV  198 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~-l----~~~~~sfD~V  198 (217)
                      ..++||||+|..-.-..|. +..+++++|.|+++..++.|++++... ++. .+|+++...-.. +    ..+++.||+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccc-cceEEEEcCCccccchhhhcccceeeEE
Confidence            4589999999874422222 345899999999999999999999988 776 788887664322 1    1234689999


Q ss_pred             EecccccccC
Q 027913          199 VGTLVLCSVK  208 (217)
Q Consensus       199 ~~~~~l~~~~  208 (217)
                      +|+--|+.-.
T Consensus       182 mCNPPFy~s~  191 (299)
T PF05971_consen  182 MCNPPFYSSQ  191 (299)
T ss_dssp             EE-----SS-
T ss_pred             ecCCccccCh
Confidence            9987766543

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.69  E-value=6.6e-05  Score=58.01  Aligned_cols=68  Identities=24%  Similarity=0.170  Sum_probs=52.4

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC---CCCceeEEEecc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVGTL  202 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~sfD~V~~~~  202 (217)
                      ..++|||||=+..+...-  .....|+.||+++.                 .-.+.+.|+.+.|+   +++.||+|.++.
T Consensus        52 ~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~-----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ-----------------HPGILQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             cceEEeecccCCCCcccc--cCceeeEEeecCCC-----------------CCCceeeccccCCCCCCcccceeEEEEEE
Confidence            479999999866554332  33457999999875                 22477888888776   467999999999


Q ss_pred             cccccCChhh
Q 027913          203 VLCSVKDVDM  212 (217)
Q Consensus       203 ~l~~~~d~~~  212 (217)
                      +|.++|++.+
T Consensus       113 VLNfVP~p~~  122 (219)
T PF11968_consen  113 VLNFVPDPKQ  122 (219)
T ss_pred             EEeeCCCHHH
Confidence            9999999865

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.66  E-value=0.00011  Score=60.77  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=50.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.++|||||++|.++..+++. +..|++||..+ |-..    +...    ++|.....|.....-+.+.+|.|+|=.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~~----L~~~----~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQS----LMDT----GQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCHh----hhCC----CCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            48899999999999999999854 56999999554 2222    2111    5788888887665322578999987443

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.66  E-value=0.00065  Score=52.90  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-  188 (217)
                      .+....+++.+  .+++.||||.=||+.+..+|.  ..+..|+++|++++..+.+.+..+..|+. .++.+++++..+. 
T Consensus        62 g~fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-~KI~~i~g~a~esL  138 (237)
T KOG1663|consen   62 GQFLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-HKITFIEGPALESL  138 (237)
T ss_pred             HHHHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-ceeeeeecchhhhH
Confidence            34444555555  889999999999998877775  34678999999999999999999999987 7999999987542 


Q ss_pred             c-----CCCCceeEEEe
Q 027913          189 P-----VSDASVDAVVG  200 (217)
Q Consensus       189 ~-----~~~~sfD~V~~  200 (217)
                      +     .+.++||+++.
T Consensus       139 d~l~~~~~~~tfDfaFv  155 (237)
T KOG1663|consen  139 DELLADGESGTFDFAFV  155 (237)
T ss_pred             HHHHhcCCCCceeEEEE
Confidence            1     45689999984

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.66  E-value=0.00034  Score=53.85  Aligned_cols=76  Identities=18%  Similarity=0.197  Sum_probs=55.0

Q ss_pred             HHHHHHHHhc--CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          114 YKSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       114 ~~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ...+|.+++.  .++..|+|||+..|.++..+++.  .+..|+|+|+.|-            .. ..+|.++++|+..-+
T Consensus        32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~-~~~V~~iq~d~~~~~   98 (205)
T COG0293          32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KP-IPGVIFLQGDITDED   98 (205)
T ss_pred             HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------cc-CCCceEEeeeccCcc
Confidence            3444555554  67899999999999999988873  3345999999764            11 156899999997643


Q ss_pred             --------CCCCceeEEEecc
Q 027913          190 --------VSDASVDAVVGTL  202 (217)
Q Consensus       190 --------~~~~sfD~V~~~~  202 (217)
                              +....+|+|++=.
T Consensus        99 ~~~~l~~~l~~~~~DvV~sD~  119 (205)
T COG0293          99 TLEKLLEALGGAPVDVVLSDM  119 (205)
T ss_pred             HHHHHHHHcCCCCcceEEecC
Confidence                    4445679998644

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.63  E-value=1.8e-05  Score=61.56  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~  200 (217)
                      ..+.+|||...|-|+.+...++.....|+.++.+++.++.|+-+--..++...+++.+.+|..++  .|+|.+||+|+-
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            36899999999999999888755555999999999999999876544444435789999998776  488999999973

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.40  E-value=0.00033  Score=62.15  Aligned_cols=80  Identities=11%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC---------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT---------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~  190 (217)
                      ...+|||.|||+|.++..++...         ...++|+|+++..+..++.++...+.  ..+.....|.....     -
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~--~~~~i~~~d~l~~~~~~~~~  108 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL--LEINVINFNSLSYVLLNIES  108 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC--CCceeeeccccccccccccc
Confidence            45689999999999987776411         24789999999999999998866541  13344444432211     1


Q ss_pred             CCCceeEEEecccccc
Q 027913          191 SDASVDAVVGTLVLCS  206 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~  206 (217)
                      ..+.||+|+.+=-+-.
T Consensus       109 ~~~~fD~IIgNPPy~~  124 (524)
T TIGR02987       109 YLDLFDIVITNPPYGR  124 (524)
T ss_pred             ccCcccEEEeCCCccc
Confidence            1257999999754443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.40  E-value=1.3e-05  Score=61.25  Aligned_cols=79  Identities=19%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+.++||+|+|.|..+..++ ..-..|.+.++|..|..+.+++         +..++  ...+..-.+-+||+|.|.+.+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk---------~ynVl--~~~ew~~t~~k~dli~clNlL  179 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKK---------NYNVL--TEIEWLQTDVKLDLILCLNLL  179 (288)
T ss_pred             CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhc---------CCcee--eehhhhhcCceeehHHHHHHH
Confidence            46899999999999998886 3334699999999999888865         22222  222222234579999999999


Q ss_pred             cccCChhhhhc
Q 027913          205 CSVKDVDMTLQ  215 (217)
Q Consensus       205 ~~~~d~~~~L~  215 (217)
                      ..--+|-..|+
T Consensus       180 DRc~~p~kLL~  190 (288)
T KOG3987|consen  180 DRCFDPFKLLE  190 (288)
T ss_pred             HhhcChHHHHH
Confidence            88777776664

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.0016  Score=54.82  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCC-CceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSD-ASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~-~sfD~  197 (217)
                      .++.+|||+.++.|.-+..+++   ..+..|+++|.++.-++..+++++..|+  .++..+..|...++  ... +.||.
T Consensus       155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~--~nv~~~~~d~~~~~~~~~~~~~fD~  232 (355)
T COG0144         155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV--RNVIVVNKDARRLAELLPGGEKFDR  232 (355)
T ss_pred             CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC--CceEEEecccccccccccccCcCcE
Confidence            4889999999999988877775   2245679999999999999999999998  57888998887664  222 35999


Q ss_pred             EEe
Q 027913          198 VVG  200 (217)
Q Consensus       198 V~~  200 (217)
                      |+.
T Consensus       233 iLl  235 (355)
T COG0144         233 ILL  235 (355)
T ss_pred             EEE
Confidence            985

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.35  E-value=0.00018  Score=54.59  Aligned_cols=68  Identities=21%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CC--C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VS--D  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~--~  192 (217)
                      .+.++||+||++|.++..+.+..  ...|+|+|+.+.           ...  .++.++++|+....        +.  .
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~--~~~~~i~~d~~~~~~~~~i~~~~~~~~   89 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL--QNVSFIQGDITNPENIKDIRKLLPESG   89 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---TTEEBTTGGGEEEEHSHHGGGSHGTTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc--cceeeeecccchhhHHHhhhhhccccc
Confidence            45899999999999999998654  579999999876           111  46777777765421        11  2


Q ss_pred             CceeEEEeccccc
Q 027913          193 ASVDAVVGTLVLC  205 (217)
Q Consensus       193 ~sfD~V~~~~~l~  205 (217)
                      +.||+|++=.+..
T Consensus        90 ~~~dlv~~D~~~~  102 (181)
T PF01728_consen   90 EKFDLVLSDMAPN  102 (181)
T ss_dssp             CSESEEEE-----
T ss_pred             cCcceeccccccC
Confidence            6899999866433

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.34  E-value=0.0016  Score=52.73  Aligned_cols=80  Identities=18%  Similarity=0.189  Sum_probs=48.1

Q ss_pred             CCCeEEEECCcCCcchHhhh-hC--CCCeEEEecCCHHHHHHHHHHHH-HcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYA-AD--TDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~-~~--~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .+.+|+=||+|.=.++..+. +.  .+..++++|++++.++.+++... ..++. .++.|+.+|....+..-..||+|+.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-KRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH--SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-CCeEEEecchhccccccccCCEEEE
Confidence            35699999999887765544 32  35689999999999999999887 44554 6899999999888755568999987


Q ss_pred             ccccc
Q 027913          201 TLVLC  205 (217)
Q Consensus       201 ~~~l~  205 (217)
                      .....
T Consensus       199 AalVg  203 (276)
T PF03059_consen  199 AALVG  203 (276)
T ss_dssp             -TT-S
T ss_pred             hhhcc
Confidence            65443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.22  E-value=0.0023  Score=52.30  Aligned_cols=75  Identities=16%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~  199 (217)
                      .++..|||+.+|.|.-+..++..  ....+++.|+++.-+...+++++..|+  .++.....|.....  .....||.|+
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--~~v~~~~~D~~~~~~~~~~~~fd~Vl  161 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--FNVIVINADARKLDPKKPESKFDRVL  161 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---SSEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--ceEEEEeeccccccccccccccchhh
Confidence            48889999999999988887762  246899999999999999999999998  58888888887762  2334699999


Q ss_pred             e
Q 027913          200 G  200 (217)
Q Consensus       200 ~  200 (217)
                      .
T Consensus       162 v  162 (283)
T PF01189_consen  162 V  162 (283)
T ss_dssp             E
T ss_pred             c
Confidence            6

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.19  E-value=0.00074  Score=57.26  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=49.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA  183 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  183 (217)
                      ....|||||+|||.++...++..+..|++++.=..|.+.|++...+.|+. +++.++.-
T Consensus        66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S-dkI~vInk  123 (636)
T KOG1501|consen   66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS-DKINVINK  123 (636)
T ss_pred             ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc-cceeeecc
Confidence            34569999999999888777777778999999999999999999999987 67777654

>PHA01634 hypothetical protein

Probab=97.14  E-value=0.005  Score=43.61  Aligned_cols=48  Identities=13%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      -.+++|+|||++-|..+.+++-.....|+++++++...+..+++.+..
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            488999999999999999998666679999999999999999887654

>PRK10742 putative methyltransferase; Provisional

Probab=97.04  E-value=0.004  Score=49.49  Aligned_cols=79  Identities=11%  Similarity=0.040  Sum_probs=60.7

Q ss_pred             eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc------CCC-CCCeEEEeccccccc-CCCCceeEEE
Q 027913          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA------GLP-LTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~------~~~-~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      +|||+-+|.|..+..++.. |.+|+++|-++.+....++.+...      +.. ..+++++.+|...+- -...+||+|+
T Consensus        91 ~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY  169 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_pred             EEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence            8999999999999998854 667999999999988888877653      110 146888999987652 1224799999


Q ss_pred             eccccccc
Q 027913          200 GTLVLCSV  207 (217)
Q Consensus       200 ~~~~l~~~  207 (217)
                      .==++.|-
T Consensus       170 lDPMfp~~  177 (250)
T PRK10742        170 LDPMFPHK  177 (250)
T ss_pred             ECCCCCCC
Confidence            87777763

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.01  E-value=0.0065  Score=49.41  Aligned_cols=84  Identities=11%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---  189 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---  189 (217)
                      ...++.+. .+++..+|.--|.|.++.++.+..+  ..++|+|-.+.+++.|++.+...+   +++.++...+..+.   
T Consensus        13 ~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~---~r~~~v~~~F~~l~~~l   89 (314)
T COG0275          13 NEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD---GRVTLVHGNFANLAEAL   89 (314)
T ss_pred             HHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC---CcEEEEeCcHHHHHHHH
Confidence            34455554 5778999999999999999997443  579999999999999999998766   68999999887764   


Q ss_pred             --CCCCceeEEEecc
Q 027913          190 --VSDASVDAVVGTL  202 (217)
Q Consensus       190 --~~~~sfD~V~~~~  202 (217)
                        ...+.+|-|+.-.
T Consensus        90 ~~~~i~~vDGiL~DL  104 (314)
T COG0275          90 KELGIGKVDGILLDL  104 (314)
T ss_pred             HhcCCCceeEEEEec
Confidence              2345788887643

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.97  E-value=0.0024  Score=53.12  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHH-----HHcCCCCCCeEEEeccccccc-CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAA-----VAAGLPLTNFKFLQAVGEAIP-VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~-----~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~  197 (217)
                      ...+||-+|.|.|.-++.+.+.+ ..+++.+|++|.|++.++++.     .+..+..+++.++..|+.++- -..+.||+
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            45689999999999999999877 469999999999999999433     222333468999999987763 23458999


Q ss_pred             EEe
Q 027913          198 VVG  200 (217)
Q Consensus       198 V~~  200 (217)
                      ||.
T Consensus       369 vIV  371 (508)
T COG4262         369 VIV  371 (508)
T ss_pred             EEE
Confidence            985

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.90  E-value=0.0022  Score=52.66  Aligned_cols=92  Identities=14%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V  190 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~  190 (217)
                      +++.+. .++...+|.--|.|.++..+++ .++.+++|+|..+.+++.+++++...+   .++.++.+++.++.     .
T Consensus        12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~---~r~~~~~~~F~~l~~~l~~~   88 (310)
T PF01795_consen   12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD---DRFIFIHGNFSNLDEYLKEL   88 (310)
T ss_dssp             HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC---TTEEEEES-GGGHHHHHHHT
T ss_pred             HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc---ceEEEEeccHHHHHHHHHHc
Confidence            444443 4788999999999999999986 345899999999999999998876553   68999999998874     3


Q ss_pred             -CCCceeEEEecc--cccccCChhh
Q 027913          191 -SDASVDAVVGTL--VLCSVKDVDM  212 (217)
Q Consensus       191 -~~~sfD~V~~~~--~l~~~~d~~~  212 (217)
                       ....+|.|+.=.  +.+++.++++
T Consensus        89 ~~~~~~dgiL~DLGvSS~Qld~~~R  113 (310)
T PF01795_consen   89 NGINKVDGILFDLGVSSMQLDDPER  113 (310)
T ss_dssp             TTTS-EEEEEEE-S--HHHHHTGGG
T ss_pred             cCCCccCEEEEccccCHHHhCCCCC
Confidence             345899998744  3345555544

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=0.0058  Score=50.89  Aligned_cols=63  Identities=19%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC---------CCCeEEEecCCHHHHHHHHHHHHHc
Q 027913          109 AEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---------TDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus       109 ~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      +.+..+..+.++.+. +.+..++|||.|+|.++..+++.         ...++..|++|++..++-++.++..
T Consensus        60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            335556566666666 45678999999999998777651         1458999999999988888887544

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.85  E-value=0.0046  Score=47.40  Aligned_cols=63  Identities=24%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-----CCCeEEEeccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-----LTNFKFLQAVGEA  187 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~v~~~~~d~~~  187 (217)
                      +...+.|||||-|.++..++. .+...+.|++|--..-++.++++......     ..|+.++..+...
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk  128 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK  128 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence            455799999999999999885 67789999999999999999888654311     1355555555433

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.81  E-value=0.0075  Score=48.36  Aligned_cols=85  Identities=14%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC----------------C----------CCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL----------------P----------LTN  177 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~----------------~----------~~~  177 (217)
                      .++.++||||||.-.+-..-+......++..|.++..++..++.++..+.                .          ...
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            35678999999986553333334455899999999999988888754320                0          001


Q ss_pred             e-EEEeccccccc-CCC-----CceeEEEecccccccC
Q 027913          178 F-KFLQAVGEAIP-VSD-----ASVDAVVGTLVLCSVK  208 (217)
Q Consensus       178 v-~~~~~d~~~l~-~~~-----~sfD~V~~~~~l~~~~  208 (217)
                      | .++..|+...+ +..     ..||+|++.+.++...
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~  172 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC  172 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence            2 35667776653 332     3599999999998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.79  E-value=0.0032  Score=50.46  Aligned_cols=77  Identities=10%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             CCeEEEECCcCCcchHhhhh---CC------CCeEEEecCCHHHHHHHHHHHHHc-----CCCCCCeEEEecccccccCC
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DT------DVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~------~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~l~~~  191 (217)
                      +.+|+|+|+|+|.++..+++   ..      ..+++.||+|+.+.+.-++++...     ... .++.+ ..++...|  
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~-~~i~w-~~~l~~~p--   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFG-DPIRW-LDDLEEVP--   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTC-GCEEE-ESSGGCS---
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccC-Cccch-hhhhhccc--
Confidence            47999999999999887775   11      248999999999988888887542     121 35666 33444443  


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                        ..-+|+++.+|..+|
T Consensus        95 --~~~~iiaNE~~DAlP  109 (252)
T PF02636_consen   95 --FPGFIIANELFDALP  109 (252)
T ss_dssp             --CCEEEEEESSGGGS-
T ss_pred             --CCEEEEEeeehhcCc
Confidence              345677777777665

; PDB: 4F3N_A 1ZKD_B.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.75  E-value=0.0053  Score=46.49  Aligned_cols=66  Identities=21%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccc--------cCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI--------PVSD  192 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l--------~~~~  192 (217)
                      .++.+|||+||..|.++.-..+  .+...|.|||+-.-             .++.-+.++.+ |+.+.        .+++
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-------------EPPEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-------------cCCCCcccccccccCCHHHHHHHHHhCCC
Confidence            6899999999999999876665  46778999998432             11123445555 55442        1566


Q ss_pred             CceeEEEecc
Q 027913          193 ASVDAVVGTL  202 (217)
Q Consensus       193 ~sfD~V~~~~  202 (217)
                      ..+|+|++-+
T Consensus       135 r~VdvVlSDM  144 (232)
T KOG4589|consen  135 RPVDVVLSDM  144 (232)
T ss_pred             CcccEEEecc
Confidence            7888888643

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.72  E-value=0.007  Score=50.11  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC  205 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~  205 (217)
                      -...+|+|.|.|..+..+.. ....+-+++.....+..++..+. .|     |+.+-+|+-.- .|  +-|+|++-+++|
T Consensus       178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g-----V~~v~gdmfq~-~P--~~daI~mkWiLh  247 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG-----VEHVAGDMFQD-TP--KGDAIWMKWILH  247 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC-----cceeccccccc-CC--CcCeEEEEeecc
Confidence            47899999999999999887 44458899999998888877764 33     56788887554 33  345999999999


Q ss_pred             ccCCh
Q 027913          206 SVKDV  210 (217)
Q Consensus       206 ~~~d~  210 (217)
                      |++|-
T Consensus       248 dwtDe  252 (342)
T KOG3178|consen  248 DWTDE  252 (342)
T ss_pred             cCChH
Confidence            99874

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.71  E-value=0.01  Score=46.46  Aligned_cols=82  Identities=16%  Similarity=0.217  Sum_probs=55.9

Q ss_pred             CCCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccc-c-c---CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEA-I-P---VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~-l-~---~~~~sfD~  197 (217)
                      +..++||||.|.-=.=..+- ...+++.+|.|+++..+..|+..+... ++. ..++.....-.. + +   -.++.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~-~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLE-RAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchh-hheeEEeccCccccccccccccceeee
Confidence            55689999887652211121 266889999999999999999998766 553 455555442222 1 1   23578999


Q ss_pred             EEeccccccc
Q 027913          198 VVGTLVLCSV  207 (217)
Q Consensus       198 V~~~~~l~~~  207 (217)
                      ++|+--||.-
T Consensus       157 tlCNPPFh~s  166 (292)
T COG3129         157 TLCNPPFHDS  166 (292)
T ss_pred             EecCCCcchh
Confidence            9999888854

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.65  E-value=0.017  Score=46.70  Aligned_cols=87  Identities=17%  Similarity=0.068  Sum_probs=62.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH---cC-------------------------C---
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA---AG-------------------------L---  173 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~-------------------------~---  173 (217)
                      .+.+||-=|||.|+++..++. .|..+.|.|.|-.|+-..+-.+..   .+                         +   
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~-~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAK-LGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhh-ccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            457899999999999999984 478999999999997665543321   00                         0   


Q ss_pred             -------CCCCeEEEecccccccCCC---CceeEEEecccccccCChhh
Q 027913          174 -------PLTNFKFLQAVGEAIPVSD---ASVDAVVGTLVLCSVKDVDM  212 (217)
Q Consensus       174 -------~~~~v~~~~~d~~~l~~~~---~sfD~V~~~~~l~~~~d~~~  212 (217)
                             ...++....+|+..+-.++   ++||+|+..+.+.-.++.-+
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~  183 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIE  183 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHH
Confidence                   1236777788887775444   79999998876655444433

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=96.62  E-value=0.0091  Score=46.27  Aligned_cols=74  Identities=16%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~  200 (217)
                      .++.+||+||-|-|...-.+-+.+...-+.|+..++.+++.++..-..   ..||..+.+-.++.  .++++.||-|+-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e---k~nViil~g~WeDvl~~L~d~~FDGI~y  175 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE---KENVIILEGRWEDVLNTLPDKHFDGIYY  175 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc---ccceEEEecchHhhhccccccCcceeEe
Confidence            589999999999998777765566678899999999999888764222   25777777766654  277889999985

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.59  E-value=0.02  Score=46.06  Aligned_cols=81  Identities=22%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             CeEEEECCcC--CcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----------CC
Q 027913          127 KKVLEIGIGT--GPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------VS  191 (217)
Q Consensus       127 ~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----------~~  191 (217)
                      ...||||||-  -.+...+++  .+..+|+-+|..+-.+..++..+....-  ....++.+|+.+..           +.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~--g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR--GRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT--SEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC--ccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            4699999993  345666765  7889999999999999999998855431  23889999997642           11


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                      -..-=.|+...+|||++|
T Consensus       148 ~~rPVavll~~vLh~v~D  165 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPD  165 (267)
T ss_dssp             TTS--EEEECT-GGGS-C
T ss_pred             CCCCeeeeeeeeeccCCC
Confidence            122236778899999987

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.53  E-value=0.0009  Score=46.08  Aligned_cols=70  Identities=27%  Similarity=0.413  Sum_probs=24.5

Q ss_pred             EEECCcCCcchHhhhhC--CC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEec
Q 027913          130 LEIGIGTGPNLKYYAAD--TD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT  201 (217)
Q Consensus       130 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~  201 (217)
                      ||||+..|..+..+++.  ..  .+++++|+.+. .+.+++.+++.++. .+++++.++..+. + ++.+++|+|+.=
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-~~~~~~~g~s~~~l~~~~~~~~dli~iD   76 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-DRVEFIQGDSPDFLPSLPDGPIDLIFID   76 (106)
T ss_dssp             --------------------------EEEESS-------------GGG--BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-CeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence            69999999988877752  22  37999999996 44455555545554 6899999998654 2 445789999853

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.51  E-value=0.012  Score=51.23  Aligned_cols=100  Identities=14%  Similarity=0.190  Sum_probs=68.2

Q ss_pred             HhhhhhHhHHHHHHHHHHHHHHHhc--CC--CCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHH
Q 027913           99 VMNSSMKSYEAEVAGYKSQLFDNLR--GK--AKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAV  169 (217)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~--~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~  169 (217)
                      .|++..-.|.+........++++..  .+  ...|+-+|+|-|.+.....+     ..-.++++|+.+|+++-..+.. +
T Consensus       337 tFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n  415 (649)
T KOG0822|consen  337 TFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-N  415 (649)
T ss_pred             hhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-c
Confidence            3444444455433344444555543  11  45688999999998766543     2345899999999998877763 3


Q ss_pred             HcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          170 AAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       170 ~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      -..|. .+|+.+..|++.++-+..+.|++++
T Consensus       416 ~~~W~-~~Vtii~~DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  416 FECWD-NRVTIISSDMRKWNAPREQADIIVS  445 (649)
T ss_pred             hhhhc-CeeEEEeccccccCCchhhccchHH
Confidence            33444 7999999999999855588999886

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=96.19  E-value=0.022  Score=47.81  Aligned_cols=55  Identities=16%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913          111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       111 ~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      +.+.+..+.+..  +-..|+|+|.|.|++++.+.-..+..|.+||-|....++|++.
T Consensus       141 lselvSsi~~f~--gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  141 LSELVSSISDFT--GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HHHHHHHHHhhc--CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            334444444443  6678999999999999999878889999999998777776644

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.13  E-value=0.0069  Score=50.02  Aligned_cols=76  Identities=21%  Similarity=0.175  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHH-------HHHHHHHcCCCCCCeEEEecccccccCC-CCce
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY-------AQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sf  195 (217)
                      .+++-|+|==.|||.++...+ ..|..|+|.|++-.|+..       .+.++++.|....=+.++.+|...-|+. ...|
T Consensus       207 ~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f  285 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF  285 (421)
T ss_pred             CCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence            488999999999999887765 778899999999999883       4567777775434567889999888754 4689


Q ss_pred             eEEEe
Q 027913          196 DAVVG  200 (217)
Q Consensus       196 D~V~~  200 (217)
                      |+|+|
T Consensus       286 DaIvc  290 (421)
T KOG2671|consen  286 DAIVC  290 (421)
T ss_pred             eEEEe
Confidence            99998

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.09  E-value=0.015  Score=45.24  Aligned_cols=54  Identities=13%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      ..+.++++.....++..|||-=||+|..+.... ..+.+.+|+|++++.++.|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence            355566666665789999999999998877654 778899999999999998875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.07  E-value=0.024  Score=46.31  Aligned_cols=58  Identities=10%  Similarity=0.031  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA  170 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~  170 (217)
                      .++.++++.....++..|||-=+|+|..+.... ..+.+++|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            355666666666789999999999998876654 7788999999999999999999853

>PRK13699 putative methylase; Provisional

Probab=96.00  E-value=0.031  Score=44.13  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      .+.+.++.....++..|||-=||+|..+.... ..+.+++|+|++++..+.+.+++.+.
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~-~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAAL-QSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH-HcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            44555666555688999999999998887654 66889999999999999999988653

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=95.93  E-value=0.035  Score=47.16  Aligned_cols=74  Identities=20%  Similarity=0.222  Sum_probs=61.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V  198 (217)
                      .++.+|||+.+..|.-+.++|.  ..-..+++.|.+.+-++..+.++...|+  .+......|...+|   ++. +||-|
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv--~ntiv~n~D~~ef~~~~~~~-~fDRV  316 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV--TNTIVSNYDGREFPEKEFPG-SFDRV  316 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC--CceEEEccCcccccccccCc-cccee
Confidence            4789999999999987777665  2334699999999999999999999998  58888889988776   554 89999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       317 LL  318 (460)
T KOG1122|consen  317 LL  318 (460)
T ss_pred             ee
Confidence            84

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.88  E-value=0.021  Score=44.91  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCC-eEEEeccccccc---CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN-FKFLQAVGEAIP---VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-v~~~~~d~~~l~---~~~~sfD~V~  199 (217)
                      .++..+||||+.||.++..+.+.....|+++|....++..--+.    +   ++ +.+...+++.+.   +. +..|+|+
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d---~rV~~~E~tN~r~l~~~~~~-~~~d~~v  149 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D---PRVIVLERTNVRYLTPEDFT-EKPDLIV  149 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C---CcEEEEecCChhhCCHHHcc-cCCCeEE
Confidence            58899999999999999999877778999999998766543332    1   22 233444555442   33 2677888


Q ss_pred             eccccccc
Q 027913          200 GTLVLCSV  207 (217)
Q Consensus       200 ~~~~l~~~  207 (217)
                      +-.+|-.+
T Consensus       150 ~DvSFISL  157 (245)
T COG1189         150 IDVSFISL  157 (245)
T ss_pred             EEeehhhH
Confidence            76666544

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.82  E-value=0.13  Score=40.30  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=51.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V  198 (217)
                      .++.+||-+|+++|.....++.  .+...|++|+.|+...+..-..++++    .|+-.+..|+....   .--+.+|+|
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI  147 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVEMVDVI  147 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccccccEE
Confidence            4788999999999998877775  55678999999996555544444443    68999999997542   112489999


Q ss_pred             Eec
Q 027913          199 VGT  201 (217)
Q Consensus       199 ~~~  201 (217)
                      ++-
T Consensus       148 ~~D  150 (229)
T PF01269_consen  148 FQD  150 (229)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            763

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.69  E-value=0.039  Score=43.58  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=45.8

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHH---HHHHHcCCC----CCCeEEEecccccc-cCCCCceeEE
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQ---TAAVAAGLP----LTNFKFLQAVGEAI-PVSDASVDAV  198 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~---~~~~~~~~~----~~~v~~~~~d~~~l-~~~~~sfD~V  198 (217)
                      .+|||.-+|-|.-+.-++ ..|.+|+++|-|+-+....+   +++......    ..+++++.+|..++ ..++.+||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            489999999999887776 35779999999997655444   333332210    13789999998774 4567899999


Q ss_pred             Eecccccc
Q 027913          199 VGTLVLCS  206 (217)
Q Consensus       199 ~~~~~l~~  206 (217)
                      +.--||.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            99888776

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.68  E-value=0.047  Score=43.50  Aligned_cols=87  Identities=18%  Similarity=0.071  Sum_probs=50.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc-----CCCCCCeEEEeccccccc---CCCCc-e
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIP---VSDAS-V  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~l~---~~~~s-f  195 (217)
                      ...+|||+|.|+|..+..++...+.+|+..|+..-+.. .+.+....     .+. ..+.....+....+   +-... |
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCCcc
Confidence            35679999999997666666567788888888764332 22221111     110 13334333333321   11123 9


Q ss_pred             eEEEecccccccCChhhh
Q 027913          196 DAVVGTLVLCSVKDVDMT  213 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~  213 (217)
                      |+|++..++++-..++.+
T Consensus       164 DlilasDvvy~~~~~e~L  181 (248)
T KOG2793|consen  164 DLILASDVVYEEESFEGL  181 (248)
T ss_pred             cEEEEeeeeecCCcchhH
Confidence            999999988876655544

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.63  E-value=0.047  Score=45.68  Aligned_cols=87  Identities=16%  Similarity=0.069  Sum_probs=44.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-----------CCC------CeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEec-
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-----------DTD------VQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQA-  183 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-----------~~~------~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~-  183 (217)
                      ...-+|+|+||..|.++..+..           ..+      .+|+.-|+-.+-....-+.+....  +...+--|+.+ 
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv   94 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV   94 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence            4567899999999988765543           111      478888887654333222221110  00001133333 


Q ss_pred             --ccccccCCCCceeEEEecccccccCCh
Q 027913          184 --VGEAIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       184 --d~~~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                        .+-.--+|+++.|++++.++|||+...
T Consensus        95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~v  123 (334)
T PF03492_consen   95 PGSFYGRLFPSNSVHFGHSSYALHWLSQV  123 (334)
T ss_dssp             ES-TTS--S-TT-EEEEEEES-TTB-SSS
T ss_pred             CchhhhccCCCCceEEEEEechhhhcccC
Confidence              222223889999999999999999874

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.53  E-value=0.24  Score=39.25  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~  200 (217)
                      -.+++||=||=+--..+.........+++.+|+.+.+++..++.+++.|+   +++.+..|+..- | --.++||++++
T Consensus        43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred             ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCEEEe
Confidence            47899999996655433322236678999999999999999999999997   499999998763 3 11379999986

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.45  E-value=0.039  Score=44.87  Aligned_cols=67  Identities=13%  Similarity=0.093  Sum_probs=50.1

Q ss_pred             eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC--CCceeEEEecc
Q 027913          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS--DASVDAVVGTL  202 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~--~~sfD~V~~~~  202 (217)
                      +++|+-||.|.+...+.+.....++++|+++..++..+.+..       . .++..|+..+...  ...+|+|+...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-------~-~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-------N-KLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-------C-CCccCccccCchhhcCCCCCEEEeCC
Confidence            689999999999877765444568999999999988887752       1 1566777776422  35699998754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.42  E-value=0.054  Score=46.05  Aligned_cols=87  Identities=13%  Similarity=0.052  Sum_probs=51.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh----------------CCCCeEEEecCCHHHHHHHHHHHHH---------cCC--CCCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA----------------DTDVQVLGVDPNRKMEKYAQTAAVA---------AGL--PLTN  177 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~----------------~~~~~v~gvD~s~~~l~~a~~~~~~---------~~~--~~~~  177 (217)
                      ...+|+|+|||+|.++..+..                .+..++..-|+..+-....-+.+..         ..+  ...+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            356899999999987654432                1245788888776544333333211         000  0011


Q ss_pred             eEEEecccccc---cCCCCceeEEEecccccccCChh
Q 027913          178 FKFLQAVGEAI---PVSDASVDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       178 v~~~~~d~~~l---~~~~~sfD~V~~~~~l~~~~d~~  211 (217)
                      .-|+.+-...+   -||+++.+++++.+++||+....
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP  179 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVP  179 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecccCc
Confidence            12333322221   38899999999999999998643

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.41  E-value=0.013  Score=40.28  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=24.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPN  157 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s  157 (217)
                      +....+|||||+|.+.--|. .-|..-+|+|.-
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R   89 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILN-SEGYPGWGIDAR   89 (112)
T ss_pred             CCCceEEccCCchHHHHHHH-hCCCCccccccc
Confidence            56789999999998776665 446667888863

; GO: 0008168 methyltransferase activity

>PTZ00357 methyltransferase; Provisional

Probab=95.25  E-value=0.22  Score=45.28  Aligned_cols=74  Identities=14%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             CeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHH-HHcCCCC------CCeEEEecccccccCCC--
Q 027913          127 KKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA-VAAGLPL------TNFKFLQAVGEAIPVSD--  192 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~------~~v~~~~~d~~~l~~~~--  192 (217)
                      ..|+=+|+|-|.+.....+     ....++++||.|++.+.....+. ....|..      ..|+++..|++.+..+.  
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            3589999999988655443     22458999999976544444433 3334421      35899999999985331  


Q ss_pred             ---------CceeEEEe
Q 027913          193 ---------ASVDAVVG  200 (217)
Q Consensus       193 ---------~sfD~V~~  200 (217)
                               +.+|+||+
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                     37999997

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.22  E-value=0.085  Score=44.88  Aligned_cols=75  Identities=13%  Similarity=0.082  Sum_probs=55.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      .+.++||.=+|+|--+..++.+  ....|+.-|+|++.++..+++++-.++....+++...|+..+- .....||+|=
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID  126 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID  126 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE
Confidence            4568999999999877666654  3468999999999999999999999986336889999988763 2457899884

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.13  E-value=0.089  Score=38.18  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=39.3

Q ss_pred             eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecc
Q 027913          150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTL  202 (217)
Q Consensus       150 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~  202 (217)
                      +|+|.|+-+++++.+++++.+.++. .+++++..+-+.+.  .+.+.+|+|+.+.
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNL   54 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNL   54 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEEC
Confidence            5899999999999999999999876 58999999888875  3445899998754

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.73  E-value=0.026  Score=41.85  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcC-CcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccc--cCCCCceeEEE
Q 027913          125 KAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAI--PVSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l--~~~~~sfD~V~  199 (217)
                      .+.+|||+|.|- |.-+..++. .+...|+..|-+++.++-.++........ ..++..+..+...-  ..+...||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            567899999994 443444443 66778999999999998888776443110 02222222222211  13446899999


Q ss_pred             eccccc
Q 027913          200 GTLVLC  205 (217)
Q Consensus       200 ~~~~l~  205 (217)
                      +...+-
T Consensus       109 aADClF  114 (201)
T KOG3201|consen  109 AADCLF  114 (201)
T ss_pred             eccchh
Confidence            987653

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.35  E-value=0.23  Score=38.30  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=52.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~  199 (217)
                      .++.+||=+|+.+|.....++. .....+++|+.|+.+....-..+.+.    .|+--+..|+....   .--+.+|+|+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy  150 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKVDVIY  150 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccccEEE
Confidence            5889999999999998888775 23467999999998777666665554    47777888876532   1113467665


Q ss_pred             e
Q 027913          200 G  200 (217)
Q Consensus       200 ~  200 (217)
                      .
T Consensus       151 ~  151 (231)
T COG1889         151 Q  151 (231)
T ss_pred             E
Confidence            4

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.59  E-value=0.19  Score=41.91  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc-cccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d-~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|+=+|+| -|.++..+++..+.+|+++|.+++-++.|++.-    .    -.++... .....--.+.||+|+..
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG----A----d~~i~~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG----A----DHVINSSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC----C----cEEEEcCCchhhHHhHhhCcEEEEC
Confidence            578888888887 345677788777899999999999999998763    1    2344322 22222111249999987


Q ss_pred             cc
Q 027913          202 LV  203 (217)
Q Consensus       202 ~~  203 (217)
                      -.
T Consensus       237 v~  238 (339)
T COG1064         237 VG  238 (339)
T ss_pred             CC
Confidence            66

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=93.50  E-value=0.28  Score=43.30  Aligned_cols=89  Identities=13%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhh----CC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA----DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~----~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      .+.+.+.+. .+..+|+|-.||+|.++....+    .. ...++|.|+++.....++-+.--.|+.. ++....+|...-
T Consensus       175 ~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~  253 (489)
T COG0286         175 SELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-DANIRHGDTLSN  253 (489)
T ss_pred             HHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-cccccccccccC
Confidence            333344443 3566999999999988765544    12 2569999999999999999987777642 445566665444


Q ss_pred             cC-----CCCceeEEEecccc
Q 027913          189 PV-----SDASVDAVVGTLVL  204 (217)
Q Consensus       189 ~~-----~~~sfD~V~~~~~l  204 (217)
                      |.     ..+.||.|+++--+
T Consensus       254 ~~~~~~~~~~~~D~viaNPPf  274 (489)
T COG0286         254 PKHDDKDDKGKFDFVIANPPF  274 (489)
T ss_pred             CcccccCCccceeEEEeCCCC
Confidence            42     33679999886544

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.49  E-value=0.1  Score=40.36  Aligned_cols=66  Identities=23%  Similarity=0.353  Sum_probs=35.4

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ++-.+  ++..|+|+|.-.|..+..++.     ....+|+|||+.-......  ..+...+. ++++++++|..+.
T Consensus        27 li~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~-~rI~~i~Gds~d~   97 (206)
T PF04989_consen   27 LIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMS-PRITFIQGDSIDP   97 (206)
T ss_dssp             HHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG-----TTEEEEES-SSST
T ss_pred             HHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhcccc-CceEEEECCCCCH
Confidence            44445  899999999999988777664     3557999999953322111  11111222 5899999998654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=93.44  E-value=0.15  Score=39.73  Aligned_cols=46  Identities=13%  Similarity=0.061  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV  169 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~  169 (217)
                      ..+-++.|-.||.|+++--+.-   ..-..++|-|+++++++.|++++.
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            4667899999999988644331   223479999999999999998864

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.06  E-value=0.26  Score=41.35  Aligned_cols=72  Identities=19%  Similarity=0.159  Sum_probs=54.7

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCC-eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEE
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVV  199 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~  199 (217)
                      +.+|||.=+|+|.=+..++.+.+. +++.-|+||+.++.++++++.+..  .+...+..|+..+-.. ...||+|=
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~--~~~~v~n~DAN~lm~~~~~~fd~ID  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG--EDAEVINKDANALLHELHRAFDVID  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc--ccceeecchHHHHHHhcCCCccEEe
Confidence            789999999999877777754444 899999999999999999987732  3556666777666322 25677763

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=92.95  E-value=0.065  Score=43.63  Aligned_cols=75  Identities=11%  Similarity=0.036  Sum_probs=54.8

Q ss_pred             CCCCeEEEECCcCCcchH-hhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLK-YYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      ..+..|+|+-+|-|+++. .+.......|+++|.+|..++..++.++..++. .+...+.+|-+.. -++...|.|..
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-~r~~i~~gd~R~~-~~~~~AdrVnL  268 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-DRCRITEGDNRNP-KPRLRADRVNL  268 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-HHHHhhhcccccc-Cccccchheee
Confidence            366899999999999998 666666779999999999999999998776543 3334444554333 34566666654

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.59  E-value=0.27  Score=34.90  Aligned_cols=66  Identities=20%  Similarity=0.256  Sum_probs=34.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~  203 (217)
                      ...+|+|||-|.=.......+..|..|+++|+.+.       .+. .|     +.++..|+.+-.+. -...|+|++..-
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g-----~~~v~DDif~P~l~iY~~a~lIYSiRP   79 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EG-----VNFVVDDIFNPNLEIYEGADLIYSIRP   79 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------S-----TTEE---SSS--HHHHTTEEEEEEES-
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cC-----cceeeecccCCCHHHhcCCcEEEEeCC
Confidence            55699999999876655544566789999999988       111 33     45888888764311 135788887553

; PDB: 2K4M_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=92.54  E-value=0.2  Score=40.55  Aligned_cols=41  Identities=24%  Similarity=0.199  Sum_probs=31.8

Q ss_pred             HhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHH
Q 027913          121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKME  161 (217)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l  161 (217)
                      ++...+++|||+|||.|.............+...|.|.+.+
T Consensus       112 ~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen  112 QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             heEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            34468999999999999887776654446788888887766

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.35  E-value=0.93  Score=38.06  Aligned_cols=82  Identities=12%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc--cccCC-CCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE--AIPVS-DASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~--~l~~~-~~sfD~V  198 (217)
                      ..+++|||+|.|.|.-+-++-. -+. .+++.++.|+..-+...........  ....+...|+.  .++++ ...|++|
T Consensus       112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCccceeehh
Confidence            4788999999999876544432 122 3688888888755554444332222  22233333332  22322 2456666


Q ss_pred             Eeccccccc
Q 027913          199 VGTLVLCSV  207 (217)
Q Consensus       199 ~~~~~l~~~  207 (217)
                      +...-|-+.
T Consensus       190 i~~~eLl~d  198 (484)
T COG5459         190 IVLDELLPD  198 (484)
T ss_pred             hhhhhhccc
Confidence            655544333

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=91.10  E-value=0.75  Score=37.63  Aligned_cols=77  Identities=18%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc--CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP--VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~--~~~~sfD~V  198 (217)
                      ..+++||=||.|.|...+..+++.. .+++.+|+....++..++-....  +...+++....+|.-.+-  ...++||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            4688999999999999988876543 47999999999999998887653  343468899999876552  456899999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       200 i~  201 (337)
T KOG1562|consen  200 IT  201 (337)
T ss_pred             EE
Confidence            85

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=91.04  E-value=0.42  Score=36.56  Aligned_cols=77  Identities=19%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-------CCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-------VSD  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-------~~~  192 (217)
                      ++..|+|+|.-.|..+.+++.   ..|  .+|+++|++-..++.+...     .  +.+.|+.++-.+..       ..+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~--p~i~f~egss~dpai~eqi~~~~~  141 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V--PDILFIEGSSTDPAIAEQIRRLKN  141 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C--CCeEEEeCCCCCHHHHHHHHHHhc
Confidence            888999999999988877775   334  7899999987665444332     1  67889999876642       233


Q ss_pred             CceeEEEecccccccC
Q 027913          193 ASVDAVVGTLVLCSVK  208 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~  208 (217)
                      +.--+.++..+-|+..
T Consensus       142 ~y~kIfvilDsdHs~~  157 (237)
T COG3510         142 EYPKIFVILDSDHSME  157 (237)
T ss_pred             CCCcEEEEecCCchHH
Confidence            3335556666666653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=91.01  E-value=0.43  Score=39.25  Aligned_cols=65  Identities=15%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             eEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913          128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL  202 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~  202 (217)
                      +++|+=||.|.+...+.+....-+.++|+++...+..+.+.       +  .....|+..+.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~-------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF-------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH-------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc-------c--ccccccccccccccccc-cceEEEecc
Confidence            68999999999888886555457999999999999888887       3  68888998875   443 599988643

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=90.69  E-value=3.2  Score=35.35  Aligned_cols=90  Identities=18%  Similarity=0.351  Sum_probs=57.4

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcc----hHhhhhC----CCCeEEEecC----CHHHHHHHHHHHHH----cCCCCCCeE
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPN----LKYYAAD----TDVQVLGVDP----NRKMEKYAQTAAVA----AGLPLTNFK  179 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~----~~~l~~~----~~~~v~gvD~----s~~~l~~a~~~~~~----~~~~~~~v~  179 (217)
                      -|++.+. ....+|+|+|.|.|..    +..|+..    +..++|||+.    +..-++.+.+++.+    .|++   ++
T Consensus       101 aIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~---fe  177 (374)
T PF03514_consen  101 AILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP---FE  177 (374)
T ss_pred             HHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc---EE
Confidence            3555554 3556899999999954    4455543    2348999999    88888888777643    4553   45


Q ss_pred             EEec---ccccc-----cCCCCceeEEEecccccccCC
Q 027913          180 FLQA---VGEAI-----PVSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       180 ~~~~---d~~~l-----~~~~~sfD~V~~~~~l~~~~d  209 (217)
                      |...   +.+.+     ...++.+=+|-+.+.|||+.+
T Consensus       178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~  215 (374)
T PF03514_consen  178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLD  215 (374)
T ss_pred             EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhcc
Confidence            5442   33333     234455556667778899863

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=90.55  E-value=0.31  Score=41.66  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=54.5

Q ss_pred             hcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      +..++..|-|+-||-|.+...++. .+..|++-|+++++++..+.+++-..+.+.+++.+..|+...
T Consensus       246 ~fk~gevv~D~FaGvGPfa~Pa~k-K~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  246 LFKPGEVVCDVFAGVGPFALPAAK-KGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             ccCCcchhhhhhcCcCccccchhh-cCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            335889999999999999988874 458899999999999999999987777655688887776543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.31  E-value=0.72  Score=31.81  Aligned_cols=59  Identities=17%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             CcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEec
Q 027913          134 IGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGT  201 (217)
Q Consensus       134 cG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~~  201 (217)
                      ||.|.++..+++   ..+..++.+|.+++.++.+++.         .+.++.+|..+..    ..-...|.|++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~---------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE---------GVEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---------TSEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc---------ccccccccchhhhHHhhcCccccCEEEEc
Confidence            567777766664   4455899999999988777753         3579999987653    222467777764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.07  E-value=0.81  Score=36.90  Aligned_cols=64  Identities=14%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      .+...++|+|||.|.++.+++..      ....++.||-...-.+.-+ ++...... ..++-+..|+.++.
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~-~~~~R~riDI~dl~   86 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESE-PKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCC-CceEEEEEEeeccc
Confidence            46779999999999999998862      3458999998765443333 33332211 25677778887764

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.96  E-value=0.92  Score=38.50  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             HhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHH-------HHcCCCC
Q 027913          105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAA-------VAAGLPL  175 (217)
Q Consensus       105 ~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~-------~~~~~~~  175 (217)
                      ..|.+.....+..+.+.+. ++.....|+|.|-|......+.. ....-+|+++...--+.+..+.       +-.|-.+
T Consensus       171 ~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~  250 (419)
T KOG3924|consen  171 ETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP  250 (419)
T ss_pred             cchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence            4577777777788888887 88999999999999998887753 3345677777654433333222       2223323


Q ss_pred             CCeEEEeccccccc---CCCCceeEEEecccc
Q 027913          176 TNFKFLQAVGEAIP---VSDASVDAVVGTLVL  204 (217)
Q Consensus       176 ~~v~~~~~d~~~l~---~~~~sfD~V~~~~~l  204 (217)
                      ..++.+.++...-.   .-....++|+++++.
T Consensus       251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~  282 (419)
T KOG3924|consen  251 NKIETIHGSFLDPKRVTEIQTEATVIFVNNVA  282 (419)
T ss_pred             CceeecccccCCHHHHHHHhhcceEEEEeccc
Confidence            56778888765532   112457778776653

>PRK07904 short chain dehydrogenase; Provisional

Probab=88.47  E-value=2.6  Score=33.47  Aligned_cols=79  Identities=15%  Similarity=0.152  Sum_probs=49.6

Q ss_pred             CCCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHH-HHHHHHHHHHcCCCCCCeEEEeccccccc---------C
Q 027913          124 GKAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQAVGEAIP---------V  190 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---------~  190 (217)
                      +.+++||=.|++.|.   +++.+++..+.+|+.++.+++. ++.+.+.+...+-  .++.++..|+.+..         .
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHHH
Confidence            366789999987662   2333443445789999888764 6655555544432  36888988886532         1


Q ss_pred             CCCceeEEEecccc
Q 027913          191 SDASVDAVVGTLVL  204 (217)
Q Consensus       191 ~~~sfD~V~~~~~l  204 (217)
                      ..+..|+++.+...
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            12579988865543

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=88.36  E-value=0.62  Score=40.38  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=54.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHH---cCCC-CCCeEEEecccccccCC-CCce
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVA---AGLP-LTNFKFLQAVGEAIPVS-DASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~---~~~~-~~~v~~~~~d~~~l~~~-~~sf  195 (217)
                      ..+..++|+|.|.|.-.-.+..   .....++.||.|..|........+.   .|.. ..++.|..   ..+|.. ...|
T Consensus       199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r---~~~pi~~~~~y  275 (491)
T KOG2539|consen  199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHR---QRLPIDIKNGY  275 (491)
T ss_pred             cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhc---ccCCCCcccce
Confidence            3567788998887754433322   3345799999999999998887754   1211 00101111   123533 3459


Q ss_pred             eEEEecccccccCChh
Q 027913          196 DAVVGTLVLCSVKDVD  211 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~  211 (217)
                      |+|++.+.++++....
T Consensus       276 Dlvi~ah~l~~~~s~~  291 (491)
T KOG2539|consen  276 DLVICAHKLHELGSKF  291 (491)
T ss_pred             eeEEeeeeeeccCCch
Confidence            9999999999987755

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.87  E-value=0.87  Score=31.78  Aligned_cols=64  Identities=25%  Similarity=0.271  Sum_probs=42.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~  201 (217)
                      ..++|+|||.|-=.-.....+..|..++++|+++.   .++     .     -+++++.|+.+.... -...|+|++.
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----~-----g~~~v~DDitnP~~~iY~~A~lIYSi   77 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----E-----GLRFVVDDITNPNISIYEGADLIYSI   77 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----c-----cceEEEccCCCccHHHhhCccceeec
Confidence            45699999998765433333466789999999987   222     2     357999998775421 1346777764

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=87.81  E-value=1.5  Score=35.62  Aligned_cols=73  Identities=15%  Similarity=0.165  Sum_probs=55.2

Q ss_pred             CCCeEEEECCcCCcchHhhh-hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~  200 (217)
                      .++.|+=+|-. -..+..++ .....++..+|+.+-.++...+.+.+.|+  +|++.++.|+.+. | .-.+.||+++.
T Consensus       152 ~gK~I~vvGDD-DLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~--~~ie~~~~Dlr~plpe~~~~kFDvfiT  227 (354)
T COG1568         152 EGKEIFVVGDD-DLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY--NNIEAFVFDLRNPLPEDLKRKFDVFIT  227 (354)
T ss_pred             CCCeEEEEcCc-hhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc--cchhheeehhcccChHHHHhhCCeeec
Confidence            67889999933 33333333 46677999999999999999999999998  5899999998763 3 11268998864

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=87.77  E-value=1.4  Score=39.61  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR  158 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~  158 (217)
                      .+...|||+||..|.++.-..+  ..+.-|+|||+-|
T Consensus        43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            4778899999999998876665  3456899999876

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=87.27  E-value=1.9  Score=36.87  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=36.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV  169 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~  169 (217)
                      .++.+||=|..|....+.++. ....+|++||+|+.++...+-+..
T Consensus        34 ~~~d~vl~ItSaG~N~L~yL~-~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   34 GPDDRVLTITSAGCNALDYLL-AGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             CCCCeEEEEccCCchHHHHHh-cCCceEEEEeCCHHHHHHHHHHHH
Confidence            588899999999888888876 444789999999998887776553

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.64  E-value=1.3  Score=32.38  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=24.7

Q ss_pred             EECCcCC--cchHhhh---hCCCCeEEEecCCHHHHHHHHHH
Q 027913          131 EIGIGTG--PNLKYYA---ADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       131 DiGcG~G--~~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      |||++.|  ....++.   ..++.+++++|+++..++..+++
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5555443   25677899999999999999888

; PDB: 2PY6_A.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=86.26  E-value=4.8  Score=31.72  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=48.0

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      .+.+... -...-|++||.|.|..++.+..........+++...++.-.+-..+...   .++....+|+...
T Consensus        41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~---~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP---GKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC---cceEEecccccee
Confidence            3444333 3566799999999999999987666678888888877766665544222   4677777777543

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=85.85  E-value=1.3  Score=36.73  Aligned_cols=65  Identities=15%  Similarity=0.060  Sum_probs=45.4

Q ss_pred             EEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEec
Q 027913          129 VLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT  201 (217)
Q Consensus       129 vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~  201 (217)
                      |+|+-||.|.+...+.+....-+.++|+++..++..+.++.       . .++.+|+.++... -..+|+++..
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-------~-~~~~~Di~~~~~~~~~~~dvl~gg   66 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-------N-KVPFGDITKISPSDIPDFDILLGG   66 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-------C-CCCccChhhhhhhhCCCcCEEEec
Confidence            58999999998888764433346789999998888887752       2 3456777776421 1257888764

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=85.48  E-value=3.1  Score=30.31  Aligned_cols=76  Identities=14%  Similarity=0.104  Sum_probs=52.6

Q ss_pred             eEEEECCcCC---cchHhhhhCCCCeEEEecCC--HHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCC
Q 027913          128 KVLEIGIGTG---PNLKYYAADTDVQVLGVDPN--RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD  192 (217)
Q Consensus       128 ~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~  192 (217)
                      ++|=+|++.|   .+++.+++..+..++.+..+  .+.++...+.+...+   .++.++..|+.+..          ...
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence            5677787766   23455555656688999988  676777766666666   58899999986531          123


Q ss_pred             CceeEEEecccccc
Q 027913          193 ASVDAVVGTLVLCS  206 (217)
Q Consensus       193 ~sfD~V~~~~~l~~  206 (217)
                      +.+|+++.+.....
T Consensus        79 ~~ld~li~~ag~~~   92 (167)
T PF00106_consen   79 GPLDILINNAGIFS   92 (167)
T ss_dssp             SSESEEEEECSCTT
T ss_pred             cccccccccccccc
Confidence            67999998776654

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.24  E-value=8.4  Score=30.10  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             CCCeEEEECCcCCc--chHhhh---hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccccCCCCceeEE
Q 027913          125 KAKKVLEIGIGTGP--NLKYYA---ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVSDASVDAV  198 (217)
Q Consensus       125 ~~~~vLDiGcG~G~--~~~~l~---~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~~~~~sfD~V  198 (217)
                      ..+.++++.++.|.  .+..|+   ++.+.+++.|-+.++-+...++.+...++. +.++|++++. +.+--.-...|++
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-~~vEfvvg~~~e~~~~~~~~iDF~  119 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-DVVEFVVGEAPEEVMPGLKGIDFV  119 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-ccceEEecCCHHHHHhhccCCCEE
Confidence            55679999766542  233333   367888999999999888888888877764 4579998884 3332111357776


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       120 vV  121 (218)
T PF07279_consen  120 VV  121 (218)
T ss_pred             EE
Confidence            64

The function of this family is unknown.

>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase

Probab=83.48  E-value=16  Score=32.72  Aligned_cols=45  Identities=13%  Similarity=0.038  Sum_probs=21.9

Q ss_pred             CeEEEECCcCCcch-------HhhhhCCCCeEEEec---CCHHHHHHHHHHHHHcCC
Q 027913          127 KKVLEIGIGTGPNL-------KYYAADTDVQVLGVD---PNRKMEKYAQTAAVAAGL  173 (217)
Q Consensus       127 ~~vLDiGcG~G~~~-------~~l~~~~~~~v~gvD---~s~~~l~~a~~~~~~~~~  173 (217)
                      .+|| |=||.|.++       +.|. ..|.+|+.+-   .++.....+.+.++..+.
T Consensus       136 ~~Vl-VlcGpGNNGGDGLVaAR~L~-~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi  190 (544)
T PLN02918        136 SRVL-AICGPGNNGGDGLVAARHLH-HFGYKPFVCYPKRTAKPLYTGLVTQLESLSV  190 (544)
T ss_pred             CEEE-EEECCCcCHHHHHHHHHHHH-HCCCceEEEEcCCCCcHHHHHHHHHHHHcCC
Confidence            4555 667777653       3332 4455555542   233333334445555443

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.43  E-value=6.1  Score=32.46  Aligned_cols=80  Identities=18%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             CCCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C
Q 027913          124 GKAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V  190 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~  190 (217)
                      -.++.||==|.|.|.   .+..++ ..+..++..|++++-.+...+.+++.|    ++.....|+.+..          -
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa-~rg~~~vl~Din~~~~~etv~~~~~~g----~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFA-KRGAKLVLWDINKQGNEETVKEIRKIG----EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHH-HhCCeEEEEeccccchHHHHHHHHhcC----ceeEEEecCCCHHHHHHHHHHHHH
Confidence            378899999999883   234444 456689999999998888888877665    5677888876531          2


Q ss_pred             CCCceeEEEecccccccC
Q 027913          191 SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~  208 (217)
                      +-+..|+++.+..+-+..
T Consensus       111 e~G~V~ILVNNAGI~~~~  128 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTGK  128 (300)
T ss_pred             hcCCceEEEeccccccCC
Confidence            346899999887665543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=83.43  E-value=0.47  Score=41.36  Aligned_cols=74  Identities=22%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V  198 (217)
                      ++.+|||.=+++|.-+..++++  ...++++-|.+++.++..+++.+..+.. +.++....|+..+    +-....||+|
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-DIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-hhcccccchHHHHHHhccccccccceE
Confidence            6779999999999888777763  3358999999999999999998777654 5566677777654    2334678888


Q ss_pred             E
Q 027913          199 V  199 (217)
Q Consensus       199 ~  199 (217)
                      =
T Consensus       188 D  188 (525)
T KOG1253|consen  188 D  188 (525)
T ss_pred             e
Confidence            5

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=83.04  E-value=14  Score=29.67  Aligned_cols=62  Identities=15%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  187 (217)
                      .+.+++|+|.|+..-++.+...     ....++-+|+|...++...+.+...... -.+.-+++|.+.
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~  144 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYEL  144 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHH
Confidence            5789999999999877666642     2248999999999997766666444322 245667777653

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=83.00  E-value=4.3  Score=32.44  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCH----HHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNR----KMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~----~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  187 (217)
                      .++.+||=+|++.|+....+..  .+..-|++++.|+    +.+..|+++        .|+--+.-|+..
T Consensus       155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--------tNiiPIiEDArh  216 (317)
T KOG1596|consen  155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--------TNIIPIIEDARH  216 (317)
T ss_pred             cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--------CCceeeeccCCC
Confidence            5899999999999988776664  5556799999987    455555554        466666666654

>PRK07454 short chain dehydrogenase; Provisional

Probab=82.98  E-value=8  Score=30.11  Aligned_cols=77  Identities=9%  Similarity=-0.020  Sum_probs=49.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      ..+++|=.|+ +|.++..+++   ..+.+|++++.+++..+...+...+.+   .++.++.+|+.+..     +.     
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG---VKAAAYSIDLSNPEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4467888885 4544444443   456789999999877666665554433   46888999987642     11     


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+|+.+....
T Consensus        81 ~~~id~lv~~ag~~   94 (241)
T PRK07454         81 FGCPDVLINNAGMA   94 (241)
T ss_pred             cCCCCEEEECCCcc
Confidence            13579998766543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.56  E-value=2.1  Score=35.60  Aligned_cols=43  Identities=26%  Similarity=0.214  Sum_probs=35.5

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCC-CeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTD-VQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~  166 (217)
                      ..+.+||=+|+|. |..+...++..| .+|+++|++++-++.|++
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            5788999999994 556666666544 589999999999999998

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=82.54  E-value=2.1  Score=36.43  Aligned_cols=44  Identities=18%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||.+|+|. |..+..+++..+. +++++|.++++++.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            4778999999987 7788888876675 699999999998888865

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=82.24  E-value=15  Score=33.02  Aligned_cols=83  Identities=14%  Similarity=0.023  Sum_probs=61.9

Q ss_pred             CCCeEEEECCcCCcchHhhh----hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCce
Q 027913          125 KAKKVLEIGIGTGPNLKYYA----ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sf  195 (217)
                      .+++||=-| |+|.++..+.    +....+++.+|.++..+....+.+.+.-. ..++.++.+|+.+..     +.+.+.
T Consensus       249 ~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~-~~~~~~~igdVrD~~~~~~~~~~~kv  326 (588)
T COG1086         249 TGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFP-ELKLRFYIGDVRDRDRVERAMEGHKV  326 (588)
T ss_pred             CCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCC-CcceEEEecccccHHHHHHHHhcCCC
Confidence            567777655 5566655544    35556899999999988888777765421 257899999998763     566789


Q ss_pred             eEEEecccccccCC
Q 027913          196 DAVVGTLVLCSVKD  209 (217)
Q Consensus       196 D~V~~~~~l~~~~d  209 (217)
                      |+|+-..++-|+|-
T Consensus       327 d~VfHAAA~KHVPl  340 (588)
T COG1086         327 DIVFHAAALKHVPL  340 (588)
T ss_pred             ceEEEhhhhccCcc
Confidence            99999999999983

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.19  E-value=3.3  Score=35.92  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~  197 (217)
                      ...+++=+|+|  .++..+++   ..+..++.+|.+++.++..++..       ..+.++.+|..+..    ..-..+|.
T Consensus       230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-------~~~~~i~gd~~~~~~L~~~~~~~a~~  300 (453)
T PRK09496        230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-------PNTLVLHGDGTDQELLEEEGIDEADA  300 (453)
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence            46778888885  44444443   55778999999999888777642       24568888875432    12246777


Q ss_pred             EEec
Q 027913          198 VVGT  201 (217)
Q Consensus       198 V~~~  201 (217)
                      |++.
T Consensus       301 vi~~  304 (453)
T PRK09496        301 FIAL  304 (453)
T ss_pred             EEEC
Confidence            7753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=82.17  E-value=1.6  Score=38.25  Aligned_cols=78  Identities=15%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .-..|+|+.+|.|.++.+|.+.+   |+.+-.-+..-.-.-..+-++|+    +-....-.+.++.-+.+||+|.+..+|
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheehhhhh
Confidence            33579999999999999997544   33333222211111122233343    122333345667666899999999988


Q ss_pred             cccCC
Q 027913          205 CSVKD  209 (217)
Q Consensus       205 ~~~~d  209 (217)
                      ....+
T Consensus       438 s~~~~  442 (506)
T PF03141_consen  438 SLYKD  442 (506)
T ss_pred             hhhcc
Confidence            87654

; GO: 0008168 methyltransferase activity

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=82.09  E-value=2.8  Score=34.43  Aligned_cols=75  Identities=9%  Similarity=-0.067  Sum_probs=43.4

Q ss_pred             CCcCCcchHhhhh----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEE----Eeccccccc-----CCCCceeEEE
Q 027913          133 GIGTGPNLKYYAA----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF----LQAVGEAIP-----VSDASVDAVV  199 (217)
Q Consensus       133 GcG~G~~~~~l~~----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~----~~~d~~~l~-----~~~~sfD~V~  199 (217)
                      -.|+|..+..+.+    .....++.+|.++..+-..++.+....-. .++++    +.+|+.+..     +.....|+|+
T Consensus         4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf   82 (293)
T PF02719_consen    4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF   82 (293)
T ss_dssp             ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred             EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence            3466777666554    33468999999999998888887543211 24444    588887643     6667899999


Q ss_pred             ecccccccC
Q 027913          200 GTLVLCSVK  208 (217)
Q Consensus       200 ~~~~l~~~~  208 (217)
                      -..++-|++
T Consensus        83 HaAA~KhVp   91 (293)
T PF02719_consen   83 HAAALKHVP   91 (293)
T ss_dssp             E------HH
T ss_pred             EChhcCCCC
Confidence            999999986

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.48  E-value=4.4  Score=29.03  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             CCCeEEEECCcCC-cc-hHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTG-PN-LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G-~~-~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++++|=||+|.- .. ..++......+++.+.-+.+-.+...+.+   +-  .++.++..  .++.-.-..+|+|+..-
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~--~~~~~~~~--~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GG--VNIEAIPL--EDLEEALQEADIVINAT   83 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TG--CSEEEEEG--GGHCHHHHTESEEEE-S
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cc--cccceeeH--HHHHHHHhhCCeEEEec
Confidence            8899999999743 22 33444444456999999877555554444   11  23444433  34431124699999876


Q ss_pred             ccccc
Q 027913          203 VLCSV  207 (217)
Q Consensus       203 ~l~~~  207 (217)
                      ...+.
T Consensus        84 ~~~~~   88 (135)
T PF01488_consen   84 PSGMP   88 (135)
T ss_dssp             STTST
T ss_pred             CCCCc
Confidence            55443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=81.45  E-value=9.1  Score=30.09  Aligned_cols=76  Identities=20%  Similarity=0.048  Sum_probs=50.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .++++|=.|++.| ....+++   ..+.+|+.++.+++.++...+.+++.+   .++.++..|+.+..     +     .
T Consensus        10 ~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG---GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            6788998886544 4444332   457899999999887777666665544   46788888876531     0     1


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+.+|.|+.+...
T Consensus        86 ~~~id~vi~~ag~   98 (256)
T PRK06124         86 HGRLDILVNNVGA   98 (256)
T ss_pred             cCCCCEEEECCCC
Confidence            1467888876654

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=80.89  E-value=7.7  Score=28.51  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=23.3

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCC
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPN  157 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s  157 (217)
                      ........-...|||+|=|+|..-..+.+ -++..++.+|-.
T Consensus        20 ~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   20 WAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             HHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             HHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            34444545568899999999987666654 566778888753

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=80.55  E-value=9.3  Score=30.05  Aligned_cols=77  Identities=12%  Similarity=0.014  Sum_probs=51.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .+++||=.|+ +|.....+++   ..|.+|++++.+++.++...+.+...+   .++.++..|+.+..     +     .
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG---LSAHALAFDVTDHDAVRAAIDAFEAE   84 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            5778998885 4444444443   457789999999887777666665544   35778888886532     1     1


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+|+.+....
T Consensus        85 ~~~~d~li~~ag~~   98 (255)
T PRK07523         85 IGPIDILVNNAGMQ   98 (255)
T ss_pred             cCCCCEEEECCCCC
Confidence            14588888876543

>PRK08703 short chain dehydrogenase; Provisional

Probab=80.39  E-value=11  Score=29.31  Aligned_cols=77  Identities=18%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C-
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V-  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~-  190 (217)
                      +++++|=.|++.| ++..+++   ..+.+|++++.+++.++...+.+.+.+-  ..+.++..|+.+..          + 
T Consensus         5 ~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~i~   81 (239)
T PRK08703          5 SDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH--PEPFAIRFDLMSAEEKEFEQFAATIA   81 (239)
T ss_pred             CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC--CCcceEEeeecccchHHHHHHHHHHH
Confidence            5678999996544 4444433   4577899999999877666555544332  24456666653210          0 


Q ss_pred             --CCCceeEEEecccc
Q 027913          191 --SDASVDAVVGTLVL  204 (217)
Q Consensus       191 --~~~sfD~V~~~~~l  204 (217)
                        -.+..|.|+.+...
T Consensus        82 ~~~~~~id~vi~~ag~   97 (239)
T PRK08703         82 EATQGKLDGIVHCAGY   97 (239)
T ss_pred             HHhCCCCCEEEEeccc
Confidence              01467988876654

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=80.05  E-value=6.8  Score=32.68  Aligned_cols=70  Identities=11%  Similarity=0.052  Sum_probs=50.5

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEecc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVGTL  202 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~~~  202 (217)
                      ..+++|+=||.|.+...+....-.-+.++|+++..++.-+.+...       ..++..|+..+.   +....+|+|+...
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~~~~~~~~~DvligGp   75 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDGEALRKSDVDVLIGGP   75 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-------CceeechHhhcChhhccccCCCEEEeCC
Confidence            458999999999888777644435689999999999888887632       356667776653   2212789888644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	7e-15
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	7e-15
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	1e-14
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-14
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	6e-14
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	4e-13
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	4e-13
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-12
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-12
3ege_A	261	Putative methyltransferase from antibiotic biosyn	3e-12
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-12
3i9f_A	170	Putative type 11 methyltransferase; structural gen	4e-12
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	9e-12
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	2e-11
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	3e-10
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-10
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-10
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-10
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	5e-10
3f4k_A	257	Putative methyltransferase; structural genomics, P	7e-10
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	8e-10
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-09
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-09
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-09
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	1e-08
3cc8_A	230	Putative methyltransferase; structural genomics, j	3e-08
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	4e-08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	4e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	4e-08
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	9e-08
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-07
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-07
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-07
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-07
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	7e-07
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	9e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	1e-06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	1e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-06
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	2e-06
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-06
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	5e-06
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	7e-06
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	7e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-05
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-05
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	2e-05
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	3e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	4e-05
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	1e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-04
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	4e-04
2p7i_A	250	Hypothetical protein; putative methyltransferase,	4e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	6e-04
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	7e-04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	9e-04
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	9e-04

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 70.2 bits (172), Expect = 7e-15
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAG-YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT 147
           PD++   Y+  +  S++  +          +   + G   +++++G G G   ++     
Sbjct: 10  PDFFAG-YSQ-LGRSIEGLDGAAEWPALRAMLPEVGGL--RIVDLGCGFGWFCRWAHEHG 65

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSV 207
              VLG+D + KM   A+ A    G+      + +A  + + +   S D    +L L  V
Sbjct: 66  ASYVLGLDLSEKMLARARAAGPDTGIT-----YERADLDKLHLPQDSFDLAYSSLALHYV 120

Query: 208 KDVDMTLQ 215
           +DV    +
Sbjct: 121 EDVARLFR 128

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 69.5 bits (170), Expect = 7e-15
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 104 MKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
           MK+   +   Y+   + N     K VL+ G G          +   +  G++ +    K 
Sbjct: 2   MKTIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKK 61

Query: 164 AQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205
           A+  +             +     +P  D S+  V     + 
Sbjct: 62  AENFSRENNF---KLNISKGDIRKLPFKDESMSFVYSYGTIF 100

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 5/120 (4%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           Y   + +  + + + Y + +   +  L   ++ K  KVL++  G G    +   D   +V
Sbjct: 6   YYRVFPTYTDINSQEYRSRIETLEPLLMKYMK-KRGKVLDLACGVG-GFSFLLEDYGFEV 63

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
           +GVD +  M + A+  A +      N +F+      +   D + D V+    +   + ++
Sbjct: 64  VGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLE 120

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQ 182
           +G+    LE+G+GTG  +         + + +D +  M +  +         +     +Q
Sbjct: 37  KGEEPVFLELGVGTG-RIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQ---VVQ 92

Query: 183 AVGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
           A   AIP+ D SV  V+   +   V D    L
Sbjct: 93  ADARAIPLPDESVHGVIVVHLWHLVPDWPKVL 124

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 14/88 (15%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           + +EIG+GTG              +GV+P+ +M + A+   V           L+   E 
Sbjct: 50  RGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKRGV---------FVLKGTAEN 95

Query: 188 IPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           +P+ D S D  +    +C V D +  L+
Sbjct: 96  LPLKDESFDFALMVTTICFVDDPERALK 123

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 66.0 bits (161), Expect = 1e-13
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
               + +     A   ++IG G G      A  +D  +  +D ++ M + A      A L
Sbjct: 32  IAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL 91

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
                + +Q     IP+ D   D +V    +   +DV    +
Sbjct: 92  N-DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFR 132

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 64.9 bits (158), Expect = 4e-13
 Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 94  EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLG 153
             Y S +      Y+   A Y+  L D +      VLE G+GTG NL          V G
Sbjct: 14  HTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTG-NLTNKLLLAGRTVYG 72

Query: 154 VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
           ++P+R+M   A+            F   +    +  V   S+D +V T     + D + 
Sbjct: 73  IEPSREMRMIAKEKLPK------EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEK 124

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 64.8 bits (158), Expect = 4e-13
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
           + +    L    + +LE+G GTG  L+        Q +GV+P+  M    +  A  A   
Sbjct: 26  EERALKGLLPPGESLLEVGAGTGYWLRRLPY---PQKVGVEPSEAMLAVGRRRAPEA--- 79

Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
                +++A GEA+P    S D V+    L  V+DV+  L 
Sbjct: 80  ----TWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLL 116

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 26/132 (19%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
           + Y      Y ++    ++  +AE+   +    ++ + + ++VL++  GTG       A+
Sbjct: 3   ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL-AE 61

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV---GTLV 203
              +V+G+D + +M + A+  A    L +   +FLQ     I   +   DAV     T++
Sbjct: 62  RGYEVVGLDLHEEMLRVARRKAKERNLKI---EFLQGDVLEIAFKN-EFDAVTMFFSTIM 117

Query: 204 LCSVKDVDMTLQ 215
               +D+     
Sbjct: 118 YFDEEDLRKLFS 129

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 63.4 bits (154), Expect = 2e-12
 Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTD 148
             ++E++     +        E    K ++  +   K   VL++G G G +  Y A    
Sbjct: 11  KHFFEQYSQMPRSKEGLKAAGEWHELK-KMLPDFNQK--TVLDLGCGFGWHCIYAAEHGA 67

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK 208
            +VLG+D + +M   A+    +         + Q   E I +   + + V+ +L L  + 
Sbjct: 68  KKVLGIDLSERMLTEAKRKTTSP-----VVCYEQKAIEDIAIEPDAYNVVLSSLALHYIA 122

Query: 209 DVDMTLQA 216
             D   + 
Sbjct: 123 SFDDICKK 130

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 63.4 bits (154), Expect = 3e-12
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 114 YKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA 171
            +  L  +       KVLE G G G      A +  D ++  +D + +  + A+      
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN 84

Query: 172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
           G+   N KFLQA   ++P  D+S D +    VL  ++  +  L+
Sbjct: 85  GIK--NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALK 126

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           K   + +IG GTG       A+  + V  V+P+  M         A   P    ++    
Sbjct: 34  KGSVIADIGAGTGGYSVA-LANQGLFVYAVEPSIVM------RQQAVVHP--QVEWFTGY 84

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
            E + + D SVD V+  L +     ++ + Q
Sbjct: 85  AENLALPDKSVDGVISILAIHHFSHLEKSFQ 115

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 115 KSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
              +      +A  +VL+IG G G +     +    + +GVD  ++M + A + A   G+
Sbjct: 10  LGLMIKTAECRAEHRVLDIGAGAG-HTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV 68

Query: 174 PLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
              N +F Q   E++P  D S D +          DV   ++
Sbjct: 69  --ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVR 108

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
            +   N+  GK   +++ G G G     Y  +   ++  +D N    K  +         
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNG-FYCKYLLEFATKLYCIDINVIALKEVKE-------- 57

Query: 175 LTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
              F  +  + +   + D SVD ++       + D    + 
Sbjct: 58  --KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVIS 96

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 25/145 (17%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKA-KKVLEIGIGT 136
           M++ ++  P +    +       +     ++ E      ++      K    VL++G G 
Sbjct: 1   MSLAHKFDPSKIKKLD-----DPSRLE-LFDPE------KVLKEFGLKEGMTVLDVGTGA 48

Query: 137 GPNLKYYAAD------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV 190
           G    +Y            +V  +D   +M  YA       GL   N + L++    IP+
Sbjct: 49  G----FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--KNVEVLKSEENKIPL 102

Query: 191 SDASVDAVVGTLVLCSVKDVDMTLQ 215
            D +VD +        + +    L+
Sbjct: 103 PDNTVDFIFMAFTFHELSEPLKFLE 127

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 9/126 (7%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
           D   EF+         S            F+    K  +VL++G G G    Y  + T  
Sbjct: 21  DSSAEFWNQNSQEMWDSGSRSTI---IPFFEQYVKKEAEVLDVGCGDG-YGTYKLSRTGY 76

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           + +GVD +  M +  +       L      F++    ++P  +   +A++    L   ++
Sbjct: 77  KAVGVDISEVMIQKGKERGEGPDL-----SFIKGDLSSLPFENEQFEAIMAINSLEWTEE 131

Query: 210 VDMTLQ 215
               L 
Sbjct: 132 PLRALN 137

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 18/130 (13%)

Query: 93  EEFYASV------MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
            EFY  +      M  +   ++       S L + L+    +VL++G GTG     +  +
Sbjct: 18  WEFYDRIARAYDSMYETP-KWKLYHRLIGSFLEEYLK-NPCRVLDLGGGTG-KWSLFLQE 74

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT-LVLC 205
              +V+ VDP+++M + A+   V           ++A  E +P    + +AV+    VL 
Sbjct: 75  RGFEVVLVDPSKEMLEVAREKGVK--------NVVEAKAEDLPFPSGAFEAVLALGDVLS 126

Query: 206 SVKDVDMTLQ 215
            V++ D    
Sbjct: 127 YVENKDKAFS 136

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +  K L++G G G   ++      V +  ++      K  +     AGL   N       
Sbjct: 82  RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGS 140

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKD 209
              IP  D S D +          D
Sbjct: 141 FLEIPCEDNSYDFIWSQDAFLHSPD 165

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 105 KSYEAEVAGYKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAADTDV--QVLGVDPNR 158
           + Y +    Y S  +  +     G+ K ++++G G G      A +     Q++G D + 
Sbjct: 12  ERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSA 71

Query: 159 KMEKYAQTAAVAAGLPLTNFKFLQAVGE------AIPVSDASVDAVV 199
            M K A+     +     N  F  +  +      A  V    +D + 
Sbjct: 72  TMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMIT 118

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 14/115 (12%)

Query: 85  HPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
           +P   + Y + + ++      +        +++L D +  +  K+L+ G G G     Y 
Sbjct: 12  NPAHSENYAQRWRNL------AAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGG-YL 64

Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199
           +     VLG D +  +  YA+     A       +++        +S+   D +V
Sbjct: 65  SKQGHDVLGTDLDPILIDYAKQDFPEA-------RWVVGDLSVDQISETDFDLIV 112

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 19/182 (10%)

Query: 46  GSRRHFIQGASTALFPLVYSST-----PSSASSPSDSMAMLNRLHPPRPDWYEEFYASVM 100
           GS  H    +   L P    S      P         +A +        D+Y+E  A   
Sbjct: 2   GSSHHHHHHSG-GLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLC-DFYDEGAADTY 59

Query: 101 NSSMKS--YEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR 158
              ++     +E      +        +  VLE+  G G  L +   D   +V  ++ + 
Sbjct: 60  RDLIQDADGTSEAR----EFATRTGPVSGPVLELAAGMG-RLTFPFLDLGWEVTALELST 114

Query: 159 KMEKYAQTAAVAAGLPL-TNFKFLQAVGEAIPVSDASVDAVV---GTLVLCSVKDVDMTL 214
            +    +     A   +      +Q    A  + D     VV   G++      D     
Sbjct: 115 SVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGLY 173

Query: 215 QA 216
            +
Sbjct: 174 AS 175

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
              K+ +IG GTG    + A     Q+ G+D      +     AV A       K +   
Sbjct: 46  DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGS 104

Query: 185 GEAIPVSDASVDAVVGTLVLCSVKD 209
            + +P  +  +D +     + ++  
Sbjct: 105 MDNLPFQNEELDLIWSEGAIYNIGF 129

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 18/135 (13%)

Query: 90  DWYEEFYASV----MNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA 145
             YE  +A V         K Y AE A   + L  +   +A  +L++  GTG +L+++  
Sbjct: 2   HMYEVDHADVYDLFYLGRGKDYAAE-ASDIADLVRSRTPEASSLLDVACGTGTHLEHFTK 60

Query: 146 DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL--- 202
           +      G++ +  M  +A+           +    Q       +      AVV      
Sbjct: 61  E-FGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVSMFSSV 111

Query: 203 -VLCSVKDVDMTLQA 216
             L + +++   + +
Sbjct: 112 GYLKTTEELGAAVAS 126

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 128 KVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
            +++ G G G              +  G+D    +   A+           + +FL+   
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDA 81

Query: 186 EAIPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
             I ++D   D  +    L  +   +  LQ
Sbjct: 82  TEIELND-KYDIAICHAFLLHMTTPETMLQ 110

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 6/123 (4%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           +   +   + S + +  +++A         L+   ++VL++  G G ++    A    +V
Sbjct: 7   HHHHHHMYVTSQIHAKGSDLAKLMQIA--ALK-GNEEVLDVATGGG-HVANAFAPFVKKV 62

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
           +  D    + K A+      G      +++Q   E +P +D     V   +      +  
Sbjct: 63  VAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPA 120

Query: 212 MTL 214
             +
Sbjct: 121 SFV 123

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +   + +IG GTG      A     QV G+D            A  +GL       +   
Sbjct: 46  EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGS 104

Query: 185 GEAIPVSDASVDAVV 199
            + +P  +  +D + 
Sbjct: 105 MDDLPFRNEELDLIW 119

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 78  MAMLNRLHPPRPDWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGI 134
           MA  +    P+ D+  E    Y  V     K Y  E A   + L      KA  +L++  
Sbjct: 1   MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHRE-AADLAALVRRHSPKAASLLDVAC 59

Query: 135 GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL 173
           GTG +L++ A      V G++ +  M   A+     A L
Sbjct: 60  GTGMHLRHLADS-FGTVEGLELSADMLAIARRRNPDAVL 97

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 54.0 bits (130), Expect = 5e-09
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           +VL++G G G      A   DV+V G+  +R     A   A AAGL      F  A    
Sbjct: 64  RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMD 122

Query: 188 IPVSDASVDAVV 199
           +P  DAS DAV 
Sbjct: 123 LPFEDASFDAVW 134

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
             Y+E    V       Y   VA    Q+        K++ +IG GTG      A     
Sbjct: 9   YVYDELMQDVP------YPEWVAWVLEQV-----EPGKRIADIGCGTGTATLLLAD--HY 55

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199
           +V GVD + +M + AQ  A+     +    F       + + +  VDA+ 
Sbjct: 56  EVTGVDLSEEMLEIAQEKAMETNRHVD---FWVQDMRELELPE-PVDAIT 101

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 100 MNSSMKSYEAEVAGY-----KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGV 154
           MNS   S   E +G+        L  +++ + K+VL+IG  +G        +   +V G+
Sbjct: 2   MNSPKNSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGA-AIKENGTRVSGI 60

Query: 155 DPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
           +   +  + A+           +          +P  +   D V+   VL  + D    +
Sbjct: 61  EAFPEAAEQAKEKLD-------HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVI 113

Query: 215 QA 216
           + 
Sbjct: 114 EK 115

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 103 SMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKY--YAADTDVQVLGVDPNRKM 160
           ++ +       ++  L  +LR     V  +  G    L    Y+A   VQ++G+D + + 
Sbjct: 97  AVLATRERHGHFRRALQRHLR-PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA 155

Query: 161 EKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA 216
              A   A    L        +     +   +   D +    +     D     + 
Sbjct: 156 LDGATRLAAGHALA-GQITLHRQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTEL 209

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 29/158 (18%), Positives = 52/158 (32%), Gaps = 22/158 (13%)

Query: 78  MAMLNRLHPPRPDWYEEFYASVMNSSMKS------YEAEVAGYKSQLFDNLRGKAKKVLE 131
           MA   R        Y E +   +N S +        + ++ G   ++ D       K+L 
Sbjct: 1   MASSMRSLFSDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDT--KSEIKILS 58

Query: 132 IGIGTG-------PNLKYYAADTDVQVLGVDPNRKM-EKYAQTAAVAAGLPLTNFKFLQA 183
           IG G G         ++       +    V+P+ +   KY +  A  + L    F + + 
Sbjct: 59  IGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKE 118

Query: 184 VGEAI------PVSDASVDAVVGTLVLCSVKDVDMTLQ 215
                             D +    +L  VKD+  TL+
Sbjct: 119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLK 156

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +  KVL+IG G G    Y          G+D    +   A               F    
Sbjct: 55  ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK----IIFEAND 110

Query: 185 GEAIPVSDASVDAVV--GTLVLCSVKD 209
                  + + D +     ++  S+++
Sbjct: 111 ILTKEFPENNFDLIYSRDAILALSLEN 137

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 15/113 (13%), Positives = 36/113 (31%), Gaps = 10/113 (8%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD 146
           + Y +F   Y  ++ +    Y+     +  +            L++  GTG   +     
Sbjct: 1   NCYNKFAHIYDKLIRAD-VDYKKWSD-FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK 58

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV 199
                  VD +++M   A+    + GL     +        + + +   D + 
Sbjct: 59  -FKNTWAVDLSQEMLSEAENKFRSQGLKP---RLACQDISNLNI-NRKFDLIT 106

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 50.4 bits (120), Expect = 9e-08
 Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 8/118 (6%)

Query: 89  PDWY-EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAAD 146
           PD Y +   A V    +    +  A YK+ L   LR     +VL++  GTG        +
Sbjct: 19  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTG-VDSIMLVE 77

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-----DASVDAVV 199
               V  VD + KM KYA              K++      + +          DAV+
Sbjct: 78  EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK---F 180
            AKKV+++G G G  L     D +  Q+ GVD +  + + A+       LP    K    
Sbjct: 29  NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88

Query: 181 LQAVGEAIPVSDASVDAVVGTLVL 204
            Q+         +  DA     V+
Sbjct: 89  FQSSLVYRDKRFSGYDAATVIEVI 112

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT---NFKFLQA 183
            ++L+IG G+G  +    A     V G+D N +  + A+TAA + GL        +F   
Sbjct: 32  DEILDIGCGSG-KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE 90

Query: 184 VGEAIPVSDASVDAVV 199
              ++   D+S D  V
Sbjct: 91  NASSLSFHDSSFDFAV 106

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 128 KVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA 187
           ++L++G G+G  L  +A D  +   G+D +      A+  A   G+      F+      
Sbjct: 39  RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAG 97

Query: 188 IPVSDASVDAVV 199
              ++   D   
Sbjct: 98  YV-ANEKCDVAA 108

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 12/129 (9%)

Query: 80  MLNRLHPPRPDWYE---EFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKA-KKVLEIGIG 135
           M N       D +    + +   +         +V      +   + G+  ++VL++G G
Sbjct: 6   MRNPEDALL-DSWHQNAQAWIDAVRHGAIESRRQVTDQA--ILLAILGRQPERVLDLGCG 62

Query: 136 TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV 195
            G  L+   AD  ++ +GVD +R +   A+ A            + Q     +PV     
Sbjct: 63  EGWLLR-ALADRGIEAVGVDGDRTLVDAARAAGAGEVH---LASYAQLAEAKVPV-GKDY 117

Query: 196 DAVVGTLVL 204
           D +     L
Sbjct: 118 DLICANFAL 126

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 23/142 (16%), Positives = 49/142 (34%), Gaps = 14/142 (9%)

Query: 80  MLNRLHPPRPDWYE---EFYASV---MNSSMKSY----EAEVAGYKSQLFDNLRGKAKKV 129
           +   L+ P   WY    E++ +V   ++  +       + ++ G ++ +         + 
Sbjct: 38  LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRA 97

Query: 130 LEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           L+ G G G   K            ++P + M + A+             KF+ A  E   
Sbjct: 98  LDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP----VGKFILASMETAT 153

Query: 190 VSDASVDAVVGTLVLCSVKDVD 211
           +   + D +V       + D D
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDAD 175

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 47.8 bits (113), Expect = 7e-07
 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 30/195 (15%)

Query: 41  KSCCCGSRRHFIQGASTALFPLV---YSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYA 97
            SC  G ++    G++ ++   V   Y  T     S +D      +L    P+ + +  A
Sbjct: 3   CSCASGCQKSKNGGSTPSIRDHVADYYGKT---LQSSADLKTSACKLAAAVPESHRKILA 59

Query: 98  SVMNSSMKSYEAEVAGYK-SQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADT---DVQVL 152
            + +      E     Y                VL++G GTG    Y A+       +V+
Sbjct: 60  DIAD------EVLEKFYGCGSTLPADGSLEGATVLDLGCGTG-RDVYLASKLVGEHGKVI 112

Query: 153 GVDPNRKMEKYAQTAA------VAAGLPLTNFKFLQAVGEAI------PVSDASVDAVVG 200
           GVD      + A+                +N +FL+   E +       V D+SVD V+ 
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

Query: 201 TLVLCSVKDVDMTLQ 215
             V     +     +
Sbjct: 173 NCVCNLSTNKLALFK 187

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.8 bits (111), Expect = 9e-07
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 17/123 (13%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
             Y+  +   M+S+  +    +                 VLE+  GTG   + + +    
Sbjct: 20  SEYDATFVPYMDSAAPAALERLRA---------GNIRGDVLELASGTGYWTR-HLSGLAD 69

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKD 209
           +V  +D + +M       A A    L N +F Q         D   DAV     L  V D
Sbjct: 70  RVTALDGSAEM------IAEAGRHGLDNVEFRQQDLFDWTP-DRQWDAVFFAHWLAHVPD 122

Query: 210 VDM 212
              
Sbjct: 123 DRF 125

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 10/98 (10%)

Query: 128 KVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVA------AGL-PLTNF 178
           K+LEIG G G      A        V G+D          T   A        L      
Sbjct: 46  KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTV 105

Query: 179 KFLQAVGEA-IPVSDASVDAVVGTLVLCSVKDVDMTLQ 215
            F   + +   P++D   D VV    L      +    
Sbjct: 106 HFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALAL 143

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL 181
             G    +L++G GTG    +  A    Q+ G++P  ++ + A+           +  F 
Sbjct: 38  ATGVDGVILDVGSGTGRWTGH-LASLGHQIEGLEPATRLVELARQT-------HPSVTFH 89

Query: 182 QAVGEAIPVSDASVDAVVGTLVL 204
                 +  S      ++    L
Sbjct: 90  HGTITDLSDSPKRWAGLLAWYSL 112

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKF 180
            A++V+++G G G  LK    D    Q+ GVD + +  + AQ       LP       + 
Sbjct: 29  NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQL 88

Query: 181 LQAVGEAIPVSDASVDAVV 199
           +Q             DA  
Sbjct: 89  IQGALTYQDKRFHGYDAAT 107

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 13/120 (10%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGY-------KSQLFDNLRGKAK---KVLEIGIGTGPN 139
                  A++ +     YE +V          +++   +  G+A     +++ G G G +
Sbjct: 72  GIGPVDRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGS 131

Query: 140 LKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDASVDAV 198
           +         +V GV  +     +    A    +      +         P    +V A 
Sbjct: 132 MVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM--LDTPFDKGAVTAS 189

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 25/160 (15%)

Query: 72  SSPSDSMAMLNRLHPPRPDWYE---EFYASVMNSSMKSYEAEVAGYKS------------ 116
           SS        + +      +Y     ++  +      + +  + GY              
Sbjct: 11  SSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIP----PTVDGMLGGYGHISSIDINSSRKF 66

Query: 117 --QLFDNLRGKA--KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG 172
             +       K      L+ G G G   K        +V  VD        A+T     G
Sbjct: 67  LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG 126

Query: 173 LPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDM 212
                  +     +       S D +    V+  + D  +
Sbjct: 127 KR--VRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHL 164

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 76  DSMAMLNRLHPPRPDWYEEFYASVMNSSMKSY----EAEVAGYKSQLFDNLRGKAKKVLE 131
           + ++ + +      D +E+++   + +S                   F+ L      +++
Sbjct: 3   EKLSAIKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLID 62

Query: 132 IGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS 191
              G G   K+ +     +V+G+D ++   + A     AA +            +A  + 
Sbjct: 63  FACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISY-RLLDGLVPEQAAQIH 120

Query: 192 DASVDAVV 199
               DA +
Sbjct: 121 SEIGDANI 128

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 15/115 (13%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
           D+Y  F       S +  +A +  Y            ++VL+IG G G  L+    +  +
Sbjct: 12  DYYFLFE-EKFRGSRELVKARLRRYIPYFK-----GCRRVLDIGCGRGEFLE-LCKEEGI 64

Query: 150 QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL 204
           + +GVD N  M K+ +         +     ++       + D  +D V+ +  +
Sbjct: 65  ESIGVDINEDMIKFCE-----GKFNVVKSDAIE---YLKSLPDKYLDGVMISHFV 111

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 89  PDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTD 148
            +++++ Y    +S+   +  + + +++ L   LR    ++L +G G             
Sbjct: 7   VEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELR-PEDRILVLGCGNSALSYELFLGGF 65

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV--GTL 202
             V  VD +  +   A   A  A +P    ++       +    AS D V+  GTL
Sbjct: 66  PNVTSVDYSSVV--VAAMQACYAHVP--QLRWETMDVRKLDFPSASFDVVLEKGTL 117

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 15/88 (17%)

Query: 115 KSQLFDNLRGKAKK--------VLEIGIGTGPNLKYYA-ADTDVQVLGVDPN----RKME 161
            ++  D  + +  +         +++G G G N+   A  D +   +G+DP       + 
Sbjct: 6   GTKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDIS 65

Query: 162 KYAQTAAVAAGLPLTNFKFLQAVGEAIP 189
           K         GL   N  F+ A  E++P
Sbjct: 66  KKIIKKPSKGGLS--NVVFVIAAAESLP 91

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP 174
           K+ L      +   VL++G G G +L  Y      +  GVD        A+  A      
Sbjct: 54  KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 175 LTNFKFLQA 183
                F   
Sbjct: 114 -FKVFFRAQ 121

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 125 KAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
           +   +L++G GTG    +      +     VD + KM + A+             K+++A
Sbjct: 44  ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG----NLKVKYIEA 99

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVD 211
                   +   D VV  L +  ++D D
Sbjct: 100 DYSKYDF-EEKYDMVVSALSIHHLEDED 126

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRG-KAKKVLEIGIGTGPNLKYYAADTD 148
              E ++           + E+    S++ + ++  K  K L++G G G N  Y  A   
Sbjct: 5   IRDENYFTD---------KYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLY-LAANG 54

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK 208
             V   D N       +       L   N          +   D   D ++ T+VL  ++
Sbjct: 55  YDVDAWDKNAMSIANVERIKSIENLD--NLHTRVVDLNNLTF-DRQYDFILSTVVLMFLE 111

Query: 209 DVDM 212
              +
Sbjct: 112 AKTI 115

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL 175
           QL + L  KA  VL+IG G G     +A A  ++   G+D ++   K A     A   P 
Sbjct: 77  QLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA-----AKRYP- 130

Query: 176 TNFKFLQAVGEAIPVSDASVDAVVGTLVLC 205
               F  A    +P SD S+DA++     C
Sbjct: 131 -QVTFCVASSHRLPFSDTSMDAIIRIYAPC 159

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 105 KSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDP-NRKMEK 162
           K  +        QL          VL++G G G +    A  +    V+ +D    +MEK
Sbjct: 10  KRVQEFSDAEFEQLRSQ---YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEK 66

Query: 163 YAQTAAV-AAGLPLTNFKFLQAVGEAIP 189
            +  AA   A   L N  +L A  E +P
Sbjct: 67  ISAKAAAKPAKGGLPNLLYLWATAERLP 94

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 127 KKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG 185
           ++ + IG G  P      +    ++V  V+    + + ++   V  GL +     +    
Sbjct: 124 ERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSR--KVIEGLGVDGVNVITGDE 181

Query: 186 EAIPVSDASV 195
             I   +  V
Sbjct: 182 TVIDGLEFDV 191

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 13/125 (10%)

Query: 77  SMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGT 136
           S AM  R      +  E     V+ +       E       LF N        +E+G G 
Sbjct: 1   SNAMRVRNRKGATELLEANPQYVVLNP-----LEAKAKWRDLFGN---DNPIHVEVGSGK 52

Query: 137 GPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDA 193
           G  +   A  + D+  +G+D   +    +        + + N K L   G  +     D 
Sbjct: 53  GAFVSGMAKQNPDINYIGIDI--QKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDG 110

Query: 194 SVDAV 198
            +D +
Sbjct: 111 EIDRL 115

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 6/83 (7%)

Query: 123 RGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLP----LT 176
              A  +++ G G+G  L        +   ++GVD + K    A              + 
Sbjct: 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK 778

Query: 177 NFKFLQAVGEAIPVSDASVDAVV 199
           +                 VD   
Sbjct: 779 SATLYDGSILEFDSRLHDVDIGT 801

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 7/108 (6%)

Query: 110 EVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168
           E   +   L  +L  G     LEIG   G   +  A     ++  +D   +    A    
Sbjct: 35  ERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQR- 92

Query: 169 VAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA 216
                   +  +          +    D +V   VL  ++D+     A
Sbjct: 93  -TKRWS--HISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTA 136

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 20/92 (21%)

Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGL- 173
           + +F N        +E+G G G  +   A  + D+  +G++           + +   + 
Sbjct: 32  NTVFGN---DNPIHIEVGTGKGQFISGMAKQNPDINYIGIEL--------FKSVIVTAVQ 80

Query: 174 -----PLTNFKFLQAVGEAIP--VSDASVDAV 198
                   N K L    + +        V  V
Sbjct: 81  KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV 112

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV 184
           +   +LE+G   G        +    +  V+ + +   +AQ              ++ + 
Sbjct: 42  RPGNLLELGSFKGDFTS-RLQEHFNDITCVEASEEAISHAQGRL------KDGITYIHSR 94

Query: 185 GEAIPVSDASVDAVV 199
            E         D +V
Sbjct: 95  FEDAQ-LPRRYDNIV 108

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 14/116 (12%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYK-----SQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
           + Y+   A  +      +   ++G             L     +VLE G G GP+   + 
Sbjct: 9   ESYDRL-ARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFG 67

Query: 145 ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV-DAVV 199
                +    D + ++ K A+  A  A +      +       +P    +    +V
Sbjct: 68  PQAA-RWAAYDFSPELLKLARANAPHADV------YEWNGKGELPAGLGAPFGLIV 116

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 25/95 (26%)

Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGL- 173
             LF     +A   LEIG G G +L   A    +   LG++          +  V A L 
Sbjct: 28  PALFGR---EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEV--------HSPGVGACLA 76

Query: 174 -----PLTNFKFLQAVGEAIPV-----SDASVDAV 198
                 L+N + +    +A+ V      D S+  V
Sbjct: 77  SAHEEGLSNLRVMC--HDAVEVLHKMIPDNSLRMV 109

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 37.9 bits (88), Expect = 9e-04
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 10/125 (8%)

Query: 92  YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQV 151
           ++E ++     S   Y  E   +   + + +     K+L +  G G N  + A+    +V
Sbjct: 2   WDERFSQ----SEYVYGTEPNDFLVSVANQIPQG--KILCLAEGEGRNACFLASL-GYEV 54

Query: 152 LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD 211
             VD +      A+  A   G+ +T    +Q+      +   + + +V            
Sbjct: 55  TAVDQSSVGLAKAKQLAQEKGVKIT---TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQ 111

Query: 212 MTLQA 216
                
Sbjct: 112 QLYPK 116

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 12/124 (9%)

Query: 83  RLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKY 142
            + P   DW  E Y        ++   +    K +          +  +IG G G  L  
Sbjct: 8   PVKPEEMDW-SELYPEFFAPLTQNQSHDDPKDKKEKRAQ---AQVEFADIGCGYGGLLVE 63

Query: 143 YA-ADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQA-VGEAIP--VSDAS 194
            +    D  +LG++   K+  Y Q    A          N   L++   + +P       
Sbjct: 64  LSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123

Query: 195 VDAV 198
           +  +
Sbjct: 124 LTKM 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.79
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.77
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.74
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.73
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.73
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.73
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.72
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.72
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.72
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.69
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.68
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.68
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.67
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.67
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.67
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.67
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.66
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.66
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.66
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.66
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.66
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.65
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.65
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.65
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.65
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.65
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.64
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.64
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.63
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.63
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.63
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.63
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.63
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.63
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.63
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.63
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.63
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.63
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.63
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.62
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.61
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.61
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.6
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.6
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.6
3ocj_A	305	Putative exported protein; structural genomics, PS	99.6
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.59
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.59
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.59
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.59
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.59
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.59
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.59
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.58
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.58
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.56
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.56
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.56
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.56
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.56
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.56
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.56
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.55
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.55
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.55
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.55
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.54
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.54
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.53
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.52
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.52
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.52
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.52
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.51
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.51
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.5
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.5
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.5
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.5
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.49
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.49
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.49
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.49
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.49
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.49
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.48
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.48
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.48
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.48
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.47
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.46
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.46
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.44
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.44
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.44
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.44
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.44
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.43
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.42
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.42
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.42
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.42
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.41
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.41
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.41
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.41
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.4
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.4
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.4
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.39
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.39
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.39
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.39
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.39
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.38
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.38
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.37
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.37
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.37
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.36
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.35
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.35
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.35
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.35
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.35
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.35
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.35
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.35
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.34
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.33
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.33
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.33
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.32
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.32
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.32
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.32
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.32
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.32
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.31
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.31
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.31
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.31
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.31
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.3
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.29
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.29
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.29
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.29
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.29
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.28
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.28
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.28
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.27
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.27
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.27
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.27
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.26
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.26
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.25
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.25
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.24
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.24
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.24
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.23
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.23
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.23
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.22
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.22
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.22
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.2
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.2
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.19
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.18
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.18
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.17
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.16
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.16
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.15
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.14
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.14
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.14
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.14
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.13
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.13
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.11
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.11
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.11
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.11
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.11
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.11
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.11
2o07_A	304	Spermidine synthase; structural genomics, structur	99.11
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.1
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.09
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.08
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.08
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.07
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.07
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.07
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.07
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.06
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.05
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.05
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.05
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.05
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.05
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.05
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.05
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.04
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.04
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	99.01
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.01
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.0
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.99
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.98
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.98
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.98
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.97
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.96
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.96
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.95
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.95
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.94
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.94
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.94
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.92
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.92
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.89
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.89
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.74
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.72
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.69
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.69
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.68
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.66
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.63
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.6
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.59
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.59
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.52
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.47
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.46
3lkd_A	542	Type I restriction-modification system methyltrans	98.32
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.26
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.26
3khk_A	544	Type I restriction-modification system methylation	98.24
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.18
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.14
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.14
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.12
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.01
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.85
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.84
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.81
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.74
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.69
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.68
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.65
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.55
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.54
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.53
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.53
3ufb_A	530	Type I restriction-modification system methyltran	97.42
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.24
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.98
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.79
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.68
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.52
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.43
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.42
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	96.3
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.16
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.97
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.75
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.69
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	95.5
2oo3_A	283	Protein involved in catabolism of external DNA; st	94.96
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.73
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.7
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.4
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.36
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.97
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	91.61
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.44
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.68
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.48
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	89.98
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.32
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.84
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.62
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.61
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.6
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.26
3me5_A	482	Cytosine-specific methyltransferase; structural ge	87.91
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.43
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.29
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	87.27
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.19
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.97
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	86.87
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	86.74
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	86.5
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	86.47
4g65_A	461	TRK system potassium uptake protein TRKA; structur	86.28
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	86.24
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	86.22
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	85.89
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	85.85
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	85.56
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	85.36
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	84.83
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	84.72
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	84.71
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	84.54
3cxt_A	291	Dehydrogenase with different specificities; rossma	84.43
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	84.42
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	84.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	84.18
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	83.99
3gms_A	340	Putative NADPH:quinone reductase; structural genom	83.78
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	83.74
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	83.51
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	83.31
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.94
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	82.83
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	82.65
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	82.39
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	82.18
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	82.05
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	82.04
1xq1_A	266	Putative tropinone reducatse; structural genomics,	81.32
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	81.12
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	81.03
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	81.01
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	80.81
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	80.73
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	80.71
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	80.71
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	80.64
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	80.56
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	80.45
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.45
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	80.43
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	80.19
1id1_A	153	Putative potassium channel protein; RCK domain, E.	80.17
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	80.13
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	80.1

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.79  E-value=9.1e-19  Score=139.89  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=94.7

Q ss_pred             HHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC---CCCeEEEecCCHHHHHHHHHHHHHc
Q 027913           95 FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      .|+....+..+.|+. +...+..+++.+..++.+|||||||+|..+..+++.   ++.+|+|+|+|+.|++.|++++...
T Consensus        41 ~fdd~i~rsvP~Y~~-~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~  119 (261)
T 4gek_A           41 VFPDMIQRSVPGYSN-IISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY  119 (261)
T ss_dssp             HHHHHHHHHSTTHHH-HHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS
T ss_pred             hhhhhHhhcCCCHHH-HHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh
Confidence            333344444556776 566667777777678999999999999999888863   4679999999999999999999887


Q ss_pred             CCCCCCeEEEecccccccCCCCceeEEEecccccccCChh--hhhcC
Q 027913          172 GLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       172 ~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                      +.. .+++|+++|+.++|++  .||+|++.++++|+++.+  .+|++
T Consensus       120 ~~~-~~v~~~~~D~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~  163 (261)
T 4gek_A          120 KAP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDK  163 (261)
T ss_dssp             CCS-SCEEEEESCTTTCCCC--SEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             ccC-ceEEEeeccccccccc--ccccceeeeeeeecCchhHhHHHHH
Confidence            765 6899999999999874  599999999999997654  44543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.77  E-value=2.4e-18  Score=132.91  Aligned_cols=103  Identities=19%  Similarity=0.261  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .....+++.+..++.+|||||||+|.++..+++.++.+++|+|+++.+++.+++++...++. .+++++++|+..+++++
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN-DRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECBTTBCSSCT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhcccc-CceEEEEcCHHHCCCCc
Confidence            34455566655344499999999999999998766779999999999999999999988875 58999999999999999


Q ss_pred             CceeEEEecccccccCChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++||+|++..+++|++++..+|++
T Consensus       110 ~~~D~v~~~~~l~~~~~~~~~l~~  133 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDVATAFRE  133 (219)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             ccccEEEECchHhhccCHHHHHHH
Confidence            999999999999999999988765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.74  E-value=1.4e-17  Score=133.27  Aligned_cols=105  Identities=29%  Similarity=0.361  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      .......+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++. .++.++++|+..+|
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~  124 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLA-NRVTFSYADAMDLP  124 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECccccCC
Confidence            4455566667665 578899999999999999998755789999999999999999999888875 58999999999999


Q ss_pred             CCCCceeEEEecccccccCChhhhhcC
Q 027913          190 VSDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +++++||+|++..+++|++++..+|++
T Consensus       125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~  151 (273)
T 3bus_A          125 FEDASFDAVWALESLHHMPDRGRALRE  151 (273)
T ss_dssp             SCTTCEEEEEEESCTTTSSCHHHHHHH
T ss_pred             CCCCCccEEEEechhhhCCCHHHHHHH
Confidence            988999999999999999999888765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.73  E-value=2.8e-17  Score=133.23  Aligned_cols=109  Identities=18%  Similarity=0.150  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHh----c-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913          107 YEAEVAGYKSQLFDNL----R-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       107 ~~~~~~~~~~~i~~~~----~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      +.+........+++.+    . .++.+|||||||+|.++..+++..+.+++|+|+|+.|++.++++....++. .+++++
T Consensus        59 ~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~  137 (297)
T 2o57_A           59 IREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVK  137 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEE
T ss_pred             hHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEE
Confidence            3333445556666666    4 578899999999999999998654679999999999999999999888875 689999


Q ss_pred             ecccccccCCCCceeEEEecccccccCChhhhhcC
Q 027913          182 QAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       182 ~~d~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++|+..+|+++++||+|++..+++|++++..+|++
T Consensus       138 ~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~  172 (297)
T 2o57_A          138 YGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQE  172 (297)
T ss_dssp             ECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             EcCcccCCCCCCCEeEEEecchhhhcCCHHHHHHH
Confidence            99999999999999999999999999998888765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.73  E-value=1.5e-17  Score=132.29  Aligned_cols=96  Identities=17%  Similarity=0.229  Sum_probs=83.9

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++. +.+++|+|+|+.|++.+++++...++  .++.++++|++.+|+++++||
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~l~~~~~~fD  105 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERFH  105 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEecHHhCCCCCCCEE
Confidence            444444 47889999999999999998854 35999999999999999999988887  489999999999999999999


Q ss_pred             EEEecccccccCChhhhhcC
Q 027913          197 AVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +|++..+++|++|+..+|++
T Consensus       106 ~V~~~~~l~~~~d~~~~l~~  125 (260)
T 1vl5_A          106 IVTCRIAAHHFPNPASFVSE  125 (260)
T ss_dssp             EEEEESCGGGCSCHHHHHHH
T ss_pred             EEEEhhhhHhcCCHHHHHHH
Confidence            99999999999999988865

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.73  E-value=9.9e-19  Score=139.35  Aligned_cols=83  Identities=22%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      +.+.+|||||||+|.++..++ ..+.+|+|+|+|+.|++.|++.        .++.++++|++++|+++++||+|++..+
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~-~~~~~v~gvD~s~~ml~~a~~~--------~~v~~~~~~~e~~~~~~~sfD~v~~~~~  108 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLA-EFFERVHAVDPGEAQIRQALRH--------PRVTYAVAPAEDTGLPPASVDVAIAAQA  108 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHH-TTCSEEEEEESCHHHHHTCCCC--------TTEEEEECCTTCCCCCSSCEEEEEECSC
T ss_pred             CCCCCEEEEcCCCCHHHHHHH-HhCCEEEEEeCcHHhhhhhhhc--------CCceeehhhhhhhcccCCcccEEEEeee
Confidence            456799999999999999998 4567999999999999887642        5899999999999999999999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      +||+ +++++++|
T Consensus       109 ~h~~-~~~~~~~e  120 (257)
T 4hg2_A          109 MHWF-DLDRFWAE  120 (257)
T ss_dssp             CTTC-CHHHHHHH
T ss_pred             hhHh-hHHHHHHH
Confidence            9888 57777765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.72  E-value=2.2e-17  Score=133.08  Aligned_cols=101  Identities=25%  Similarity=0.300  Sum_probs=87.3

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCC
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSD  192 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~  192 (217)
                      ....++..+..++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|++++...++. .+++++++|+..++ +.+
T Consensus        57 ~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           57 DLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVS-DNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCG-GGEEEEESCGGGTGGGCS
T ss_pred             HHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCC-cceEEEEcCHHHhhhhcC
Confidence            344556666556789999999999999999865 779999999999999999999888774 58999999999987 778


Q ss_pred             CceeEEEecccccccCChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++||+|++..+++|++++..+|++
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~  158 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQT  158 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             CCceEEEECchhhcccCHHHHHHH
Confidence            999999999999999999888765

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.72  E-value=2.8e-17  Score=130.25  Aligned_cols=98  Identities=17%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .++..+. .++.+|||||||+|.++..+++..+.+++|+|+|+.|++.+++++...++. .++.++++|+..+++ +++|
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~-~~~f  104 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGYVA-NEKC  104 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTCCC-SSCE
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEECChHhCCc-CCCC
Confidence            3444444 578899999999999999998755779999999999999999999888875 589999999999987 7899


Q ss_pred             eEEEecccccccCChhhhhcC
Q 027913          196 DAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~e  216 (217)
                      |+|++..+++|++++..+|++
T Consensus       105 D~V~~~~~~~~~~~~~~~l~~  125 (256)
T 1nkv_A          105 DVAACVGATWIAGGFAGAEEL  125 (256)
T ss_dssp             EEEEEESCGGGTSSSHHHHHH
T ss_pred             CEEEECCChHhcCCHHHHHHH
Confidence            999999999999999888765

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.72  E-value=2.3e-17  Score=131.80  Aligned_cols=98  Identities=16%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             HHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .++..+.  .++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.+++++...++. .+++++++|++++++++++
T Consensus        36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~  114 (267)
T 3kkz_A           36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQ-NRVTGIVGSMDDLPFRNEE  114 (267)
T ss_dssp             HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCCTTC
T ss_pred             HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCC-cCcEEEEcChhhCCCCCCC
Confidence            3444443  478899999999999999999776679999999999999999999998885 5799999999999988899


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|+ ++..+|++
T Consensus       115 fD~i~~~~~~~~~-~~~~~l~~  135 (267)
T 3kkz_A          115 LDLIWSEGAIYNI-GFERGLNE  135 (267)
T ss_dssp             EEEEEESSCGGGT-CHHHHHHH
T ss_pred             EEEEEEcCCceec-CHHHHHHH
Confidence            9999999999999 78877754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.70  E-value=4.2e-17  Score=132.61  Aligned_cols=101  Identities=20%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc
Q 027913          106 SYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV  184 (217)
Q Consensus       106 ~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d  184 (217)
                      .+++........+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++. .+++++++|
T Consensus        52 ~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d  130 (302)
T 3hem_A           52 TLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVRIQG  130 (302)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCS-SCEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECC
Confidence            344445556666777775 677899999999999999998764589999999999999999999998875 589999999


Q ss_pred             cccccCCCCceeEEEecccccccCCh
Q 027913          185 GEAIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       185 ~~~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                      +.++   +++||+|++..+++|++|+
T Consensus       131 ~~~~---~~~fD~v~~~~~~~~~~d~  153 (302)
T 3hem_A          131 WEEF---DEPVDRIVSLGAFEHFADG  153 (302)
T ss_dssp             GGGC---CCCCSEEEEESCGGGTTCC
T ss_pred             HHHc---CCCccEEEEcchHHhcCcc
Confidence            9887   6899999999999999876

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=1.4e-16  Score=125.37  Aligned_cols=95  Identities=24%  Similarity=0.414  Sum_probs=84.0

Q ss_pred             HHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      ++.+. .++.+|||||||+|.++..+++. +.+++|+|+++.|++.+++++...++  .++.++++|++.+++++++||+
T Consensus        14 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           14 IKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCEEE
T ss_pred             HHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CCeEEEecccccCCCCCCcEEE
Confidence            33443 57889999999999999998854 45999999999999999999988887  4899999999999998899999


Q ss_pred             EEecccccccCChhhhhcC
Q 027913          198 VVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       198 V~~~~~l~~~~d~~~~L~e  216 (217)
                      |++..+++|++++..+|++
T Consensus        91 v~~~~~l~~~~~~~~~l~~  109 (239)
T 1xxl_A           91 ITCRYAAHHFSDVRKAVRE  109 (239)
T ss_dssp             EEEESCGGGCSCHHHHHHH
T ss_pred             EEECCchhhccCHHHHHHH
Confidence            9999999999999888765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.69  E-value=1.3e-16  Score=126.53  Aligned_cols=98  Identities=16%  Similarity=0.246  Sum_probs=84.8

Q ss_pred             HHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .++..+.  .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++. .+++++++|+..+|+++++
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~  114 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCA-DRVKGITGSMDNLPFQNEE  114 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCSSCTTC
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCCCCCC
Confidence            3444442  467899999999999999998755559999999999999999999998885 5699999999999998899


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|+ ++..+|++
T Consensus       115 fD~v~~~~~l~~~-~~~~~l~~  135 (257)
T 3f4k_A          115 LDLIWSEGAIYNI-GFERGMNE  135 (257)
T ss_dssp             EEEEEEESCSCCC-CHHHHHHH
T ss_pred             EEEEEecChHhhc-CHHHHHHH
Confidence            9999999999999 78777764

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.68  E-value=1.2e-16  Score=128.17  Aligned_cols=91  Identities=27%  Similarity=0.382  Sum_probs=83.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++ .++.+++|+|+++.+++.+++++...++  .+++++++|+..+++++++||+|++..
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--KNVKFLQANIFSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCcEEEEcccccCCCCCCCeeEEEEec
Confidence            5788999999999999999886 4478999999999999999999988887  589999999999999899999999999


Q ss_pred             cccccCChhhhhcC
Q 027913          203 VLCSVKDVDMTLQA  216 (217)
Q Consensus       203 ~l~~~~d~~~~L~e  216 (217)
                      +++|++++..+|++
T Consensus       114 ~l~~~~~~~~~l~~  127 (276)
T 3mgg_A          114 VLEHLQSPEEALKS  127 (276)
T ss_dssp             CGGGCSCHHHHHHH
T ss_pred             hhhhcCCHHHHHHH
Confidence            99999999888764

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.68  E-value=2.4e-16  Score=122.04  Aligned_cols=97  Identities=23%  Similarity=0.377  Sum_probs=85.2

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||||||+|.++..+++.  +..+++|+|+++.+++.+++++...++  .+++++++|+..+++++++
T Consensus        29 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~  106 (219)
T 3dh0_A           29 VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL--KNVEVLKSEENKIPLPDNT  106 (219)
T ss_dssp             HHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC--TTEEEEECBTTBCSSCSSC
T ss_pred             HHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEecccccCCCCCCC
Confidence            444444 47789999999999999998863  457999999999999999999988887  4899999999999988899


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|++++..+|++
T Consensus       107 fD~v~~~~~l~~~~~~~~~l~~  128 (219)
T 3dh0_A          107 VDFIFMAFTFHELSEPLKFLEE  128 (219)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHH
T ss_pred             eeEEEeehhhhhcCCHHHHHHH
Confidence            9999999999999999888765

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.67  E-value=3.4e-16  Score=127.93  Aligned_cols=99  Identities=16%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+.  .++.+|||||||+|.++..+++..+.+|+|+|+++.+++.|++++...++. .+++++++|++.+|++++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRID-DHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhcCCCCCC
Confidence            44555554  467899999999999999998654779999999999999999999998875 589999999999999889


Q ss_pred             ceeEEEecccccccCChhhhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +||+|++..+++|+ ++..+|++
T Consensus       185 ~fD~V~~~~~l~~~-~~~~~l~~  206 (312)
T 3vc1_A          185 AVTASWNNESTMYV-DLHDLFSE  206 (312)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHH
T ss_pred             CEeEEEECCchhhC-CHHHHHHH
Confidence            99999999999999 57777764

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.67  E-value=2.1e-16  Score=128.31  Aligned_cols=91  Identities=18%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEecccccccCCC------Cc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSD------AS  194 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~l~~~~------~s  194 (217)
                      .++.+|||||||+|.++..+++  .++.+|+|+|+|+.|++.|++++... +.. .+++|+++|++.+++++      ++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY-KNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CC-TTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCC-CceEEEEcCHHhCCccccccccCCC
Confidence            5788999999999999999986  46889999999999999999999876 222 68999999999998877      89


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..++||+ ++..+|++
T Consensus       114 fD~V~~~~~l~~~-~~~~~l~~  134 (299)
T 3g5t_A          114 IDMITAVECAHWF-DFEKFQRS  134 (299)
T ss_dssp             EEEEEEESCGGGS-CHHHHHHH
T ss_pred             eeEEeHhhHHHHh-CHHHHHHH
Confidence            9999999999999 99888765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.67  E-value=5.6e-17  Score=127.38  Aligned_cols=87  Identities=18%  Similarity=0.305  Sum_probs=77.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++.  ..   .++.++++|+..+++++++||+|++..+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~  125 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG--EG---PDLSFIKGDLSSLPFENEQFEAIMAINS  125 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT--CB---TTEEEEECBTTBCSSCTTCEEEEEEESC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc--cc---CCceEEEcchhcCCCCCCCccEEEEcCh
Confidence            47889999999999999999865 679999999999999999874  11   5899999999999998999999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|++
T Consensus       126 l~~~~~~~~~l~~  138 (242)
T 3l8d_A          126 LEWTEEPLRALNE  138 (242)
T ss_dssp             TTSSSCHHHHHHH
T ss_pred             HhhccCHHHHHHH
Confidence            9999999888764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.67  E-value=3.1e-16  Score=120.80  Aligned_cols=90  Identities=30%  Similarity=0.411  Sum_probs=77.9

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCC-eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ..++..+..++.+|||||||+|.++..+    +. +++|+|+|+.|++.++++.       .++.++++|+..+++++++
T Consensus        27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~   95 (211)
T 2gs9_A           27 ERALKGLLPPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGES   95 (211)
T ss_dssp             HHHHHTTCCCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSSC
T ss_pred             HHHHHHhcCCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCCc
Confidence            3345555457889999999999988877    45 8999999999999999875       3678999999999998899


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|++++..+|++
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~  117 (211)
T 2gs9_A           96 FDVVLLFTTLEFVEDVERVLLE  117 (211)
T ss_dssp             EEEEEEESCTTTCSCHHHHHHH
T ss_pred             EEEEEEcChhhhcCCHHHHHHH
Confidence            9999999999999999888765

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.66  E-value=2.5e-16  Score=122.09  Aligned_cols=92  Identities=22%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCC---CCeEEEecccccccCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPL---TNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      ++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.+++++...++..   .+++++++|+..+++++++||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            78899999999999999998643 3699999999999999999987665530   1799999999888877889999999


Q ss_pred             cccccccCCh--hhhhcC
Q 027913          201 TLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       201 ~~~l~~~~d~--~~~L~e  216 (217)
                      ..+++|++++  ..+|++
T Consensus       109 ~~~l~~~~~~~~~~~l~~  126 (219)
T 3jwg_A          109 IEVIEHLDENRLQAFEKV  126 (219)
T ss_dssp             ESCGGGCCHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHH
Confidence            9999999866  455543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.66  E-value=2.7e-16  Score=121.78  Aligned_cols=92  Identities=22%  Similarity=0.188  Sum_probs=78.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCC---CCCeEEEecccccccCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      ++.+|||||||+|.++..+++. +..+++|+|+|+.+++.+++++...++.   ..+++++++|+...+.++++||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            7889999999999999999864 3469999999999999999998766653   01799999999888777789999999


Q ss_pred             cccccccCCh--hhhhcC
Q 027913          201 TLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       201 ~~~l~~~~d~--~~~L~e  216 (217)
                      ..+++|++++  ..+|++
T Consensus       109 ~~~l~~~~~~~~~~~l~~  126 (217)
T 3jwh_A          109 IEVIEHLDLSRLGAFERV  126 (217)
T ss_dssp             ESCGGGCCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            9999999866  555543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.66  E-value=4.6e-16  Score=120.09  Aligned_cols=92  Identities=26%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             HHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+++.+.  .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++    .+.  .+++++++|+..+ +++++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~--~~~~~~~~d~~~~-~~~~~  107 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR----HGL--DNVEFRQQDLFDW-TPDRQ  107 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG----GCC--TTEEEEECCTTSC-CCSSC
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh----cCC--CCeEEEecccccC-CCCCc
Confidence            3444443  46679999999999999998865 6799999999999999998    344  5899999999988 77899


Q ss_pred             eeEEEecccccccCCh--hhhhcC
Q 027913          195 VDAVVGTLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~--~~~L~e  216 (217)
                      ||+|++..+++|++++  ..+|++
T Consensus       108 ~D~v~~~~~l~~~~~~~~~~~l~~  131 (218)
T 3ou2_A          108 WDAVFFAHWLAHVPDDRFEAFWES  131 (218)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             eeEEEEechhhcCCHHHHHHHHHH
Confidence            9999999999999986  555543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.66  E-value=9e-16  Score=121.80  Aligned_cols=89  Identities=26%  Similarity=0.296  Sum_probs=79.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+|+.|++.+++++ ..+.  .++.++++|++.+++++++||+|++..+
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI-AGVD--RKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT-TTSC--TTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-hccC--CceEEEEcccccCCCCCCCeeEEEECCc
Confidence            47789999999999999999854 679999999999999999987 3222  5899999999999988899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|++
T Consensus       114 l~~~~~~~~~l~~  126 (263)
T 2yqz_A          114 WHLVPDWPKVLAE  126 (263)
T ss_dssp             GGGCTTHHHHHHH
T ss_pred             hhhcCCHHHHHHH
Confidence            9999999888765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.66  E-value=2.9e-16  Score=123.38  Aligned_cols=84  Identities=18%  Similarity=0.123  Sum_probs=74.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++ .+.+++|+|+|+.+++.|+++..      .+++++++|++.+ +++++||+|++..++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~------~~v~~~~~d~~~~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQE-HFNDITCVEASEEAISHAQGRLK------DGITYIHSRFEDA-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGC-CCSSCEEEEEEESCG
T ss_pred             CCCcEEEECCCCCHHHHHHHH-hCCcEEEEeCCHHHHHHHHHhhh------CCeEEEEccHHHc-CcCCcccEEEEhhHH
Confidence            678999999999999999985 35589999999999999998752      1789999999988 467899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++++..+|++
T Consensus       114 ~~~~~~~~~l~~  125 (250)
T 2p7i_A          114 EHIDDPVALLKR  125 (250)
T ss_dssp             GGCSSHHHHHHH
T ss_pred             HhhcCHHHHHHH
Confidence            999999988875

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.66  E-value=3e-16  Score=124.20  Aligned_cols=88  Identities=24%  Similarity=0.296  Sum_probs=78.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++..  .   .++.++++|+..+++++++||+|++..+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~  117 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--S---PVVCYEQKAIEDIAIEPDAYNVVLSSLA  117 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--C---TTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--c---CCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence            4788999999999999999986644499999999999999998864  1   5899999999999998899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|++
T Consensus       118 l~~~~~~~~~l~~  130 (253)
T 3g5l_A          118 LHYIASFDDICKK  130 (253)
T ss_dssp             GGGCSCHHHHHHH
T ss_pred             hhhhhhHHHHHHH
Confidence            9999999988765

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1.1e-16  Score=127.60  Aligned_cols=92  Identities=23%  Similarity=0.374  Sum_probs=79.9

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++        .+++|+++|++.+|+++++
T Consensus        24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~--------~~~~~~~~d~~~~~~~~~~   94 (261)
T 3ege_A           24 NAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIVMRQQAVVH--------PQVEWFTGYAENLALPDKS   94 (261)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHHHHHSSCCC--------TTEEEECCCTTSCCSCTTC
T ss_pred             HHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHHHHHHHHhc--------cCCEEEECchhhCCCCCCC
Confidence            33444444 4788999999999999999985 678999999999999988765        2789999999999998999


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|++++..+|++
T Consensus        95 fD~v~~~~~l~~~~~~~~~l~~  116 (261)
T 3ege_A           95 VDGVISILAIHHFSHLEKSFQE  116 (261)
T ss_dssp             BSEEEEESCGGGCSSHHHHHHH
T ss_pred             EeEEEEcchHhhccCHHHHHHH
Confidence            9999999999999999988875

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.65  E-value=5.8e-17  Score=124.66  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=73.6

Q ss_pred             HHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC----------CCCCCeEEEeccccc
Q 027913          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEA  187 (217)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~v~~~~~d~~~  187 (217)
                      +..+. .++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++.....          ....+++++++|+..
T Consensus        15 ~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~   93 (203)
T 1pjz_A           15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   93 (203)
T ss_dssp             HHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc
Confidence            34443 47789999999999999999864 6799999999999999998764210          001579999999999


Q ss_pred             ccCCC-CceeEEEecccccccCCh
Q 027913          188 IPVSD-ASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       188 l~~~~-~sfD~V~~~~~l~~~~d~  210 (217)
                      +++++ ++||+|++..+++|+++.
T Consensus        94 l~~~~~~~fD~v~~~~~l~~l~~~  117 (203)
T 1pjz_A           94 LTARDIGHCAAFYDRAAMIALPAD  117 (203)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCHH
T ss_pred             CCcccCCCEEEEEECcchhhCCHH
Confidence            98765 799999999999999743

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.65  E-value=4.4e-16  Score=125.51  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc
Q 027913          107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG  185 (217)
Q Consensus       107 ~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~  185 (217)
                      +++........+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++. .+++++.+|+
T Consensus        45 l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~  123 (287)
T 1kpg_A           45 LQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVLLAGW  123 (287)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEEESCG
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCC-CCeEEEECCh
Confidence            33434455566666665 577899999999999999998545669999999999999999999887765 5899999999


Q ss_pred             ccccCCCCceeEEEeccccccc--CChhhhhcC
Q 027913          186 EAIPVSDASVDAVVGTLVLCSV--KDVDMTLQA  216 (217)
Q Consensus       186 ~~l~~~~~sfD~V~~~~~l~~~--~d~~~~L~e  216 (217)
                      .++|   ++||+|++..+++|+  +++..+|++
T Consensus       124 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~  153 (287)
T 1kpg_A          124 EQFD---EPVDRIVSIGAFEHFGHERYDAFFSL  153 (287)
T ss_dssp             GGCC---CCCSEEEEESCGGGTCTTTHHHHHHH
T ss_pred             hhCC---CCeeEEEEeCchhhcChHHHHHHHHH
Confidence            8876   789999999999999  567777654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.65  E-value=1.1e-15  Score=121.99  Aligned_cols=85  Identities=26%  Similarity=0.442  Sum_probs=72.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++. ++.+++|+|+|+.+++.|+++.       .++.++++|+..+++++++||+|++.+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcchhhCCCCCCceeEEEEeC
Confidence            47889999999999999999875 3679999999999999998864       467999999999998889999999988


Q ss_pred             cccccCChhhhhc
Q 027913          203 VLCSVKDVDMTLQ  215 (217)
Q Consensus       203 ~l~~~~d~~~~L~  215 (217)
                      +...+....++|+
T Consensus       157 ~~~~l~~~~~~L~  169 (269)
T 1p91_A          157 APCKAEELARVVK  169 (269)
T ss_dssp             CCCCHHHHHHHEE
T ss_pred             ChhhHHHHHHhcC
Confidence            8766655555443

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.65  E-value=3.5e-16  Score=131.42  Aligned_cols=92  Identities=25%  Similarity=0.301  Sum_probs=81.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHc-----C-CCCCCeEEEecccccc------cC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-----G-LPLTNFKFLQAVGEAI------PV  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-----~-~~~~~v~~~~~d~~~l------~~  190 (217)
                      ++.+|||||||+|.++..+++.  ++.+|+|+|+|+.|++.|++++...     | +...+++|+++|++.+      ++
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            7789999999999999988863  5679999999999999999988654     3 3235899999999988      88


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++..+++|++++..+|++
T Consensus       163 ~~~~fD~V~~~~~l~~~~d~~~~l~~  188 (383)
T 4fsd_A          163 PDSSVDIVISNCVCNLSTNKLALFKE  188 (383)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             CCCCEEEEEEccchhcCCCHHHHHHH
Confidence            88999999999999999999988875

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.65  E-value=9.5e-16  Score=122.05  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=79.9

Q ss_pred             HHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC
Q 027913           93 EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG  172 (217)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~  172 (217)
                      ..+|+..+......|......... ++.....++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|++++    
T Consensus        19 a~~yd~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~----   92 (263)
T 3pfg_A           19 AELYDLVHQGKGKDYHREAADLAA-LVRRHSPKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN----   92 (263)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHH-HHHHHCTTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC----
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHH-HHHhhCCCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC----
Confidence            344444443222334443333333 33333346789999999999999999854 678999999999999999875    


Q ss_pred             CCCCCeEEEecccccccCCCCceeEEEecc-cccccCCh
Q 027913          173 LPLTNFKFLQAVGEAIPVSDASVDAVVGTL-VLCSVKDV  210 (217)
Q Consensus       173 ~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~l~~~~d~  210 (217)
                         .++.++++|+..+++ +++||+|++.. +++|++++
T Consensus        93 ---~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~  127 (263)
T 3pfg_A           93 ---PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQ  127 (263)
T ss_dssp             ---TTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHH
T ss_pred             ---CCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCH
Confidence               478999999999987 68999999998 99999643

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.64  E-value=1.2e-16  Score=123.81  Aligned_cols=85  Identities=24%  Similarity=0.352  Sum_probs=75.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++.      .+++++++|+..++++ ++||+|++..+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~d~~~~~~~-~~fD~v~~~~~  115 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP------KEFSITEGDFLSFEVP-TSIDTIVSTYA  115 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC------TTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC------CceEEEeCChhhcCCC-CCeEEEEECcc
Confidence            47889999999999999999865 6799999999999999998853      2788999999999887 89999999999


Q ss_pred             ccccCChhh--hhcC
Q 027913          204 LCSVKDVDM--TLQA  216 (217)
Q Consensus       204 l~~~~d~~~--~L~e  216 (217)
                      ++|+++++.  +|++
T Consensus       116 l~~~~~~~~~~~l~~  130 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAK  130 (220)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHH
Confidence            999998876  6654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.64  E-value=6.1e-16  Score=121.69  Aligned_cols=90  Identities=18%  Similarity=0.056  Sum_probs=77.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++....+++|+|+|+.|++.+++++...+.  .++.++++|+..+++++++||+|++..++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC--ceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            5789999999999999998865566999999999999999999866532  47899999999998888899999999999


Q ss_pred             cccCChh--hhhcC
Q 027913          205 CSVKDVD--MTLQA  216 (217)
Q Consensus       205 ~~~~d~~--~~L~e  216 (217)
                      +|++++.  .+|++
T Consensus       157 ~~~~~~~~~~~l~~  170 (241)
T 2ex4_A          157 GHLTDQHLAEFLRR  170 (241)
T ss_dssp             GGSCHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHH
Confidence            9998854  55543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.63  E-value=6.6e-16  Score=125.04  Aligned_cols=92  Identities=21%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCeEEEECCcCCcchHh----hhh-CCCCe--EEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEeccccccc------C
Q 027913          125 KAKKVLEIGIGTGPNLKY----YAA-DTDVQ--VLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIP------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~----l~~-~~~~~--v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~l~------~  190 (217)
                      ++.+|||||||+|.++..    ++. .+...  ++|+|+|++|++.|++++... ++...++.+..+++++++      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            567999999999975543    322 34554  499999999999999998653 442123445567776654      5


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++.+++||++|+.++|+|
T Consensus       132 ~~~~fD~V~~~~~l~~~~d~~~~l~~  157 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKDIPATLKF  157 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             CCCceeEEEEeeeeeecCCHHHHHHH
Confidence            67899999999999999999999876

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.63  E-value=8.1e-16  Score=118.10  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=75.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..++...+.+++|+|+|+.|++.+++++...+   .++.++++|+..+++++++||+|++..++
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN---FKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT---CCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEECchhhCCCCCCceeEEEEcChH
Confidence            678999999999998544444567799999999999999999987766   46889999999999888999999999999


Q ss_pred             ccc--CChhhhhcC
Q 027913          205 CSV--KDVDMTLQA  216 (217)
Q Consensus       205 ~~~--~d~~~~L~e  216 (217)
                      +|+  .++..+|++
T Consensus       100 ~~~~~~~~~~~l~~  113 (209)
T 2p8j_A          100 FHMRKNDVKEAIDE  113 (209)
T ss_dssp             GGSCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHH
Confidence            999  566666543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.63  E-value=7.6e-16  Score=123.24  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHH------HHHHHHHHHHHcCCCCCCeEEE
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRK------MEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      .......+++.+. .++.+|||||||+|.++..+++.  +..+|+|+|+|+.      +++.+++++...++. .+++++
T Consensus        28 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~-~~v~~~  106 (275)
T 3bkx_A           28 QTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLG-DRLTVH  106 (275)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTG-GGEEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCC-CceEEE
Confidence            4445555666665 57889999999999999998864  3379999999997      999999999887764 589999


Q ss_pred             ecc---cccccCCCCceeEEEecccccccCChhhhh
Q 027913          182 QAV---GEAIPVSDASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       182 ~~d---~~~l~~~~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                      .+|   ...+|+++++||+|++..+++|++++..++
T Consensus       107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~  142 (275)
T 3bkx_A          107 FNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALA  142 (275)
T ss_dssp             CSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHH
T ss_pred             ECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHH
Confidence            998   556677889999999999999999987644

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.63  E-value=4.1e-16  Score=120.53  Aligned_cols=82  Identities=17%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++...    .+++++++|+..++ ++++||+|++..+
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~  123 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW----SHISWAATDILQFS-TAELFDLIVVAEV  123 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC----SSEEEEECCTTTCC-CSCCEEEEEEESC
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC----CCeEEEEcchhhCC-CCCCccEEEEccH
Confidence            46789999999999999999854 468999999999999999987543    47999999999998 6789999999999


Q ss_pred             ccccCChh
Q 027913          204 LCSVKDVD  211 (217)
Q Consensus       204 l~~~~d~~  211 (217)
                      ++|+++++
T Consensus       124 l~~~~~~~  131 (216)
T 3ofk_A          124 LYYLEDMT  131 (216)
T ss_dssp             GGGSSSHH
T ss_pred             HHhCCCHH
Confidence            99999874

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.63  E-value=1.1e-15  Score=123.42  Aligned_cols=94  Identities=16%  Similarity=0.161  Sum_probs=78.9

Q ss_pred             hcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEe
Q 027913          122 LRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVG  200 (217)
Q Consensus       122 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~  200 (217)
                      ...++.+|||||||+|.++..+++....+++|+|+|+.+++.|++++...++. .++.++++|+..+++ ++++||+|++
T Consensus        61 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             hCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ccEEEEECCccccccCCCCCcCEEEE
Confidence            33578899999999999998887655559999999999999999999877664 579999999999887 6789999999


Q ss_pred             cccccc----cCChhhhhcC
Q 027913          201 TLVLCS----VKDVDMTLQA  216 (217)
Q Consensus       201 ~~~l~~----~~d~~~~L~e  216 (217)
                      ..++||    ..++..+|++
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~  159 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRN  159 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHH
T ss_pred             CchhhhhcCCHHHHHHHHHH
Confidence            999987    4555666543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.63  E-value=1.6e-15  Score=115.35  Aligned_cols=88  Identities=23%  Similarity=0.254  Sum_probs=78.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++. +.+++|+|+|+.+++.+++++...++  .++.++.+|+..+++ +++||+|++..++
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~~d~~~~~~-~~~~D~v~~~~~l  107 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL--DNLHTRVVDLNNLTF-DRQYDFILSTVVL  107 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC--TTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC--CCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence            6789999999999999999865 67999999999999999999988876  479999999999988 7899999999999


Q ss_pred             cccC--ChhhhhcC
Q 027913          205 CSVK--DVDMTLQA  216 (217)
Q Consensus       205 ~~~~--d~~~~L~e  216 (217)
                      +|++  ++..+|++
T Consensus       108 ~~~~~~~~~~~l~~  121 (199)
T 2xvm_A          108 MFLEAKTIPGLIAN  121 (199)
T ss_dssp             GGSCGGGHHHHHHH
T ss_pred             hhCCHHHHHHHHHH
Confidence            9997  66666543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.63  E-value=1e-15  Score=121.55  Aligned_cols=85  Identities=14%  Similarity=0.122  Sum_probs=70.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH----------cCC-----CCCCeEEEeccccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA----------AGL-----PLTNFKFLQAVGEAIP  189 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~----------~~~-----~~~~v~~~~~d~~~l~  189 (217)
                      ++.+|||+|||+|..+..|++. |.+|+|||+|+.|++.|+++...          .++     ...+++|+++|+..++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence            7789999999999999999854 67999999999999999876531          000     0157999999999998


Q ss_pred             CCC-CceeEEEecccccccCCh
Q 027913          190 VSD-ASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       190 ~~~-~sfD~V~~~~~l~~~~d~  210 (217)
                      +++ ++||+|++..+|+++++.
T Consensus       147 ~~~~~~FD~V~~~~~l~~l~~~  168 (252)
T 2gb4_A          147 RANIGKFDRIWDRGALVAINPG  168 (252)
T ss_dssp             GGCCCCEEEEEESSSTTTSCGG
T ss_pred             cccCCCEEEEEEhhhhhhCCHH
Confidence            764 899999999999999753

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.63  E-value=1.1e-15  Score=123.56  Aligned_cols=91  Identities=21%  Similarity=0.264  Sum_probs=77.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC--CCCeEEEeccccccc---CCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP--LTNFKFLQAVGEAIP---VSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~v~~~~~d~~~l~---~~~~sfD~V~  199 (217)
                      ++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+..  ..++.+..+|+..++   +++++||+|+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            7889999999999999999865 569999999999999999887443321  146789999999988   7889999999


Q ss_pred             ec-ccccccCC-------hhhhhcC
Q 027913          200 GT-LVLCSVKD-------VDMTLQA  216 (217)
Q Consensus       200 ~~-~~l~~~~d-------~~~~L~e  216 (217)
                      +. .+++|+++       +..+|++
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~  160 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKN  160 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHH
T ss_pred             EcChHHhhcCccccCHHHHHHHHHH
Confidence            98 89999999       7777664

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=6e-16  Score=118.46  Aligned_cols=84  Identities=18%  Similarity=0.231  Sum_probs=75.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+.+|||||||+|.++..+++. +.+++|+|+|+.|++.++++.       .+++++++|+..+++++++||+|++..++
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTH-------PSVTFHHGTITDLSDSPKRWAGLLAWYSL  112 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHC-------TTSEEECCCGGGGGGSCCCEEEEEEESSS
T ss_pred             CCCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC-------CCCeEEeCcccccccCCCCeEEEEehhhH
Confidence            4889999999999999999865 669999999999999999873       57899999999999888999999999999


Q ss_pred             cccC--ChhhhhcC
Q 027913          205 CSVK--DVDMTLQA  216 (217)
Q Consensus       205 ~~~~--d~~~~L~e  216 (217)
                      +|++  ++..+|++
T Consensus       113 ~~~~~~~~~~~l~~  126 (203)
T 3h2b_A          113 IHMGPGELPDALVA  126 (203)
T ss_dssp             TTCCTTTHHHHHHH
T ss_pred             hcCCHHHHHHHHHH
Confidence            9997  77777754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.63  E-value=4.7e-16  Score=136.88  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=77.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~~  201 (217)
                      +.+.+|||||||+|.++..+++ .|.+|+|||+++.+|+.|+..+.+.+.  .+++|.+++++++  ++++++||+|+|.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~-~ga~V~giD~~~~~i~~a~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLAS-KGATIVGIDFQQENINVCRALAEENPD--FAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHTSTT--SEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHh-CCCEEEEECCCHHHHHHHHHHHHhcCC--CceEEEECCHHHHhhhccCCCccEEEEC
Confidence            4678999999999999999985 578999999999999999999988775  4799999999998  4677899999999


Q ss_pred             ccccccCChhhh
Q 027913          202 LVLCSVKDVDMT  213 (217)
Q Consensus       202 ~~l~~~~d~~~~  213 (217)
                      .+|+|++|+...
T Consensus       142 e~~ehv~~~~~~  153 (569)
T 4azs_A          142 SVFHHIVHLHGI  153 (569)
T ss_dssp             SCHHHHHHHHCH
T ss_pred             cchhcCCCHHHH
Confidence            999999988643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.63  E-value=2e-16  Score=125.66  Aligned_cols=99  Identities=14%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ....+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....    .+++++++|+..+|+++
T Consensus        43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~~  118 (266)
T 3ujc_A           43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEFPE  118 (266)
T ss_dssp             HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC----TTEEEEECCTTTCCCCT
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC----CCeEEEECccccCCCCC
Confidence            3445555554 577899999999999999998654779999999999999999876433    48999999999999989


Q ss_pred             CceeEEEeccccccc--CChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSV--KDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~--~d~~~~L~e  216 (217)
                      ++||+|++..+++|+  +++..+|++
T Consensus       119 ~~fD~v~~~~~l~~~~~~~~~~~l~~  144 (266)
T 3ujc_A          119 NNFDLIYSRDAILALSLENKNKLFQK  144 (266)
T ss_dssp             TCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHhcChHHHHHHHHH
Confidence            999999999999999  777777764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.62  E-value=3.2e-15  Score=117.28  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=79.7

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .....++.....++.+|||||||+|.++..+++. +.+++|+|+|+.|++.++++....+.   ++.++++|+..++++ 
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~-   99 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNIN-   99 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCCS-
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC---CeEEEecccccCCcc-
Confidence            3333344333237789999999999999998854 67899999999999999999877663   789999999999877 


Q ss_pred             CceeEEEecc-ccccc---CChhhhhc
Q 027913          193 ASVDAVVGTL-VLCSV---KDVDMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~-~l~~~---~d~~~~L~  215 (217)
                      ++||+|++.. +++|+   +++..+|+
T Consensus       100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~  126 (246)
T 1y8c_A          100 RKFDLITCCLDSTNYIIDSDDLKKYFK  126 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHH
T ss_pred             CCceEEEEcCccccccCCHHHHHHHHH
Confidence            8899999998 99999   45555554

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.62  E-value=9e-16  Score=120.02  Aligned_cols=88  Identities=20%  Similarity=0.256  Sum_probs=75.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++ .++.+++|+|+|+.+++.+++++...    .++.++++|+..++++ ++||+|++..
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~~-~~fD~v~~~~  117 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN----LKVKYIEADYSKYDFE-EKYDMVVSAL  117 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC----TTEEEEESCTTTCCCC-SCEEEEEEES
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC----CCEEEEeCchhccCCC-CCceEEEEeC
Confidence            4678999999999999999886 34789999999999999999986433    2799999999999877 8999999999


Q ss_pred             cccccCChhh--hhcC
Q 027913          203 VLCSVKDVDM--TLQA  216 (217)
Q Consensus       203 ~l~~~~d~~~--~L~e  216 (217)
                      +++|+++++.  +|++
T Consensus       118 ~l~~~~~~~~~~~l~~  133 (234)
T 3dtn_A          118 SIHHLEDEDKKELYKR  133 (234)
T ss_dssp             CGGGSCHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHH
Confidence            9999987653  5543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=1.7e-15  Score=123.99  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      .......+++.+. .++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++. .+++++++|+.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~  153 (318)
T 2fk8_A           75 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQGWEDFA  153 (318)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECChHHCC
Confidence            3445555666665 577899999999999999988654679999999999999999999888875 57999999998875


Q ss_pred             CCCCceeEEEeccccccc--CChhhhhcC
Q 027913          190 VSDASVDAVVGTLVLCSV--KDVDMTLQA  216 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~--~d~~~~L~e  216 (217)
                         ++||+|++..+++|+  +++..+|++
T Consensus       154 ---~~fD~v~~~~~l~~~~~~~~~~~l~~  179 (318)
T 2fk8_A          154 ---EPVDRIVSIEAFEHFGHENYDDFFKR  179 (318)
T ss_dssp             ---CCCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred             ---CCcCEEEEeChHHhcCHHHHHHHHHH
Confidence               789999999999999  566776654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.61  E-value=2.1e-15  Score=117.16  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc-
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV-  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~-  203 (217)
                      ++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++....+   .+++++++|+..+++++++||+|++..+ 
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  113 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE---SNVEFIVGDARKLSFEDKTFDYVIFIDSI  113 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC---CCceEEECchhcCCCCCCcEEEEEEcCch
Confidence            5789999999999999888854 3499999999999999999987766   4789999999998888889999999999 


Q ss_pred             -ccccCChhhhhcC
Q 027913          204 -LCSVKDVDMTLQA  216 (217)
Q Consensus       204 -l~~~~d~~~~L~e  216 (217)
                       +++.+++..+|++
T Consensus       114 ~~~~~~~~~~~l~~  127 (227)
T 1ve3_A          114 VHFEPLELNQVFKE  127 (227)
T ss_dssp             GGCCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHH
Confidence             6666666666653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=1.4e-15  Score=122.13  Aligned_cols=90  Identities=27%  Similarity=0.364  Sum_probs=78.4

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++ ++.+|+|+|+|+.|++.++++.       .++.++++|++.+++ +++||
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~fD  119 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV-DKPLD  119 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC-SSCEE
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc-CCCcC
Confidence            444444 4778999999999999999986 7789999999999999999874       467899999999987 57999


Q ss_pred             EEEecccccccCChhhhhcC
Q 027913          197 AVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +|++..+++|++|+..+|++
T Consensus       120 ~v~~~~~l~~~~d~~~~l~~  139 (279)
T 3ccf_A          120 AVFSNAMLHWVKEPEAAIAS  139 (279)
T ss_dssp             EEEEESCGGGCSCHHHHHHH
T ss_pred             EEEEcchhhhCcCHHHHHHH
Confidence            99999999999999988865

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.60  E-value=3.1e-15  Score=120.65  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=79.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|.++..+++. + +.+|+|+|+|+.+++.+++++...+   .+++++++|+..++++ ++||+|++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~v~~~~~d~~~~~~~-~~fD~v~~~   96 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP---YDSEFLEGDATEIELN-DKYDIAICH   96 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS---SEEEEEESCTTTCCCS-SCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEcchhhcCcC-CCeeEEEEC
Confidence            47889999999999999999864 3 4799999999999999999987665   3899999999999874 699999999


Q ss_pred             ccccccCChhhhhcC
Q 027913          202 LVLCSVKDVDMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e  216 (217)
                      .+++|++++..+|++
T Consensus        97 ~~l~~~~~~~~~l~~  111 (284)
T 3gu3_A           97 AFLLHMTTPETMLQK  111 (284)
T ss_dssp             SCGGGCSSHHHHHHH
T ss_pred             ChhhcCCCHHHHHHH
Confidence            999999999888765

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.60  E-value=1.2e-15  Score=119.56  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      .++.....++.+|||||||+|.++..++ ..+.+|+|+|+|+.+++.+++++...+.. .+++++++|+..++ ++++||
T Consensus        58 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~fD  134 (235)
T 3lcc_A           58 HLVDTSSLPLGRALVPGCGGGHDVVAMA-SPERFVVGLDISESALAKANETYGSSPKA-EYFSFVKEDVFTWR-PTELFD  134 (235)
T ss_dssp             HHHHTTCSCCEEEEEETCTTCHHHHHHC-BTTEEEEEECSCHHHHHHHHHHHTTSGGG-GGEEEECCCTTTCC-CSSCEE
T ss_pred             HHHHhcCCCCCCEEEeCCCCCHHHHHHH-hCCCeEEEEECCHHHHHHHHHHhhccCCC-cceEEEECchhcCC-CCCCee
Confidence            3444444456799999999999999987 46779999999999999999998654332 57999999999987 456999


Q ss_pred             EEEecccccccC--ChhhhhcC
Q 027913          197 AVVGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~--d~~~~L~e  216 (217)
                      +|++..+++|++  ++..+|++
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~  156 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKS  156 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHH
T ss_pred             EEEEChhhhcCCHHHHHHHHHH
Confidence            999999999998  66666654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.60  E-value=8.5e-16  Score=118.38  Aligned_cols=88  Identities=19%  Similarity=0.199  Sum_probs=74.5

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      ++..+ .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.+++++        ++.++.+|+..++ ++++||+
T Consensus        37 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~~fD~  105 (211)
T 3e23_A           37 FLGEL-PAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AIDAYDA  105 (211)
T ss_dssp             HHTTS-CTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCSCEEE
T ss_pred             HHHhc-CCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCCcEEE
Confidence            34333 36789999999999999999865 679999999999999999986        3568899999998 7789999


Q ss_pred             EEecccccccC--ChhhhhcC
Q 027913          198 VVGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       198 V~~~~~l~~~~--d~~~~L~e  216 (217)
                      |++..+++|++  ++..+|++
T Consensus       106 v~~~~~l~~~~~~~~~~~l~~  126 (211)
T 3e23_A          106 VWAHACLLHVPRDELADVLKL  126 (211)
T ss_dssp             EEECSCGGGSCHHHHHHHHHH
T ss_pred             EEecCchhhcCHHHHHHHHHH
Confidence            99999999998  66666654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.60  E-value=2.8e-15  Score=122.09  Aligned_cols=87  Identities=15%  Similarity=0.050  Sum_probs=78.6

Q ss_pred             CCCCeEEEECCcCCcchHhhh--hCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYA--ADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|.++..++  ..++.+|+|+|+++.+++.+++++...++. .+++++++|+..++++ ++||+|++.
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~v~~~  194 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALA-GQITLHRQDAWKLDTR-EGYDLLTSN  194 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEECCGGGCCCC-SCEEEEECC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCC-CceEEEECchhcCCcc-CCeEEEEEC
Confidence            578899999999999999985  356789999999999999999999887764 5699999999999987 899999999


Q ss_pred             ccccccCChhh
Q 027913          202 LVLCSVKDVDM  212 (217)
Q Consensus       202 ~~l~~~~d~~~  212 (217)
                      .+++|+++++.
T Consensus       195 ~~~~~~~~~~~  205 (305)
T 3ocj_A          195 GLNIYEPDDAR  205 (305)
T ss_dssp             SSGGGCCCHHH
T ss_pred             ChhhhcCCHHH
Confidence            99999998876

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.59  E-value=9.7e-16  Score=120.47  Aligned_cols=82  Identities=22%  Similarity=0.351  Sum_probs=71.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++          +.++.+|+..+  ++++++||+|++.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~----------~~~~~~d~~~~~~~~~~~~fD~i~~~  108 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK----------FNVVKSDAIEYLKSLPDKYLDGVMIS  108 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT----------SEEECSCHHHHHHTSCTTCBSEEEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh----------cceeeccHHHHhhhcCCCCeeEEEEC
Confidence            46789999999999999988854 66899999999999999864          57999999886  7888999999999


Q ss_pred             ccccccCCh--hhhhcC
Q 027913          202 LVLCSVKDV--DMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~--~~~L~e  216 (217)
                      .+++|++++  ..+|++
T Consensus       109 ~~l~~~~~~~~~~~l~~  125 (240)
T 3dli_A          109 HFVEHLDPERLFELLSL  125 (240)
T ss_dssp             SCGGGSCGGGHHHHHHH
T ss_pred             CchhhCCcHHHHHHHHH
Confidence            999999955  666654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.59  E-value=1.7e-15  Score=119.72  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      ..+...+++.+. .++.+|||||||+|.++..+++....+++|+|+|+.+++.+++++...    .++.++++|+..+++
T Consensus        79 ~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~  154 (254)
T 1xtp_A           79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATL  154 (254)
T ss_dssp             HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCC
T ss_pred             HHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC----CceEEEEccHHHCCC
Confidence            344555666665 467899999999999999988654567999999999999999987443    378999999999998


Q ss_pred             CCCceeEEEecccccccCC--hhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKD--VDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d--~~~~L~e  216 (217)
                      ++++||+|++..+++|+++  +..+|++
T Consensus       155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~  182 (254)
T 1xtp_A          155 PPNTYDLIVIQWTAIYLTDADFVKFFKH  182 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCCCeEEEEEcchhhhCCHHHHHHHHHH
Confidence            8899999999999999954  6666653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.59  E-value=2.3e-15  Score=118.15  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=68.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe-
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG-  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~-  200 (217)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+   .+++++++|++++  ++++++||+|++ 
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~V~~d  135 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC---CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence            4778999999999999999975455589999999999999999887665   4799999999998  898899999999 


Q ss_pred             cccc
Q 027913          201 TLVL  204 (217)
Q Consensus       201 ~~~l  204 (217)
                      .+.+
T Consensus       136 ~~~~  139 (236)
T 1zx0_A          136 TYPL  139 (236)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            6654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.59  E-value=2.2e-15  Score=119.33  Aligned_cols=92  Identities=17%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+++.+. .++.+|||||||+|.++..+++. ++.+++|+|+|+.|++.++++.       .++.++++|++.++ ++++
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~-~~~~   95 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-------PNTNFGKADLATWK-PAQK   95 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-------TTSEEEECCTTTCC-CSSC
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------CCcEEEECChhhcC-ccCC
Confidence            3455554 57789999999999999988863 4678999999999999999872       57899999999998 7789


Q ss_pred             eeEEEecccccccCChhhhhcC
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ||+|++..+++|++++..+|++
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~  117 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQ  117 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHH
T ss_pred             cCEEEEeCchhhCCCHHHHHHH
Confidence            9999999999999999888764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.59  E-value=3.3e-15  Score=116.43  Aligned_cols=92  Identities=27%  Similarity=0.330  Sum_probs=80.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC---CCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||||||+|.++..+++. +.+++|+|+++.+++.+++++...++.   ..++.++++|+..+++++++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            47889999999999999999865 679999999999999999998766642   13689999999999988899999999


Q ss_pred             cccccccCChh---hhhcC
Q 027913          201 TLVLCSVKDVD---MTLQA  216 (217)
Q Consensus       201 ~~~l~~~~d~~---~~L~e  216 (217)
                      ..+++|+++++   .+|++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~  126 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKE  126 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHH
T ss_pred             cchhhcCCCHHHHHHHHHH
Confidence            99999999987   66553

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=9.7e-15  Score=115.33  Aligned_cols=99  Identities=22%  Similarity=0.317  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      ..+...++..+. .++.+|||||||+|.++..+++. +.+++|+|+|+.|++.++++....+.   ++.++++|+..+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~  102 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIAF  102 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEECChhhccc
Confidence            345555555554 46789999999999999999864 67999999999999999999987764   68999999999886


Q ss_pred             CCCceeEEEecc-cccccC--Chhhhhc
Q 027913          191 SDASVDAVVGTL-VLCSVK--DVDMTLQ  215 (217)
Q Consensus       191 ~~~sfD~V~~~~-~l~~~~--d~~~~L~  215 (217)
                      + ++||+|++.+ .+++++  +...+|+
T Consensus       103 ~-~~fD~v~~~~~~~~~~~~~~~~~~l~  129 (252)
T 1wzn_A          103 K-NEFDAVTMFFSTIMYFDEEDLRKLFS  129 (252)
T ss_dssp             C-SCEEEEEECSSGGGGSCHHHHHHHHH
T ss_pred             C-CCccEEEEcCCchhcCCHHHHHHHHH
Confidence            5 6899999875 444443  3344443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.59  E-value=5.1e-15  Score=111.68  Aligned_cols=86  Identities=13%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCC
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSD  192 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~  192 (217)
                      +...++.....++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++  .++++++.|.+.++ +.+
T Consensus        11 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~~~~~l~~~~~   87 (185)
T 3mti_A           11 MSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI--ENTELILDGHENLDHYVR   87 (185)
T ss_dssp             HHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC--CCEEEEESCGGGGGGTCC
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCcHHHHHhhcc
Confidence            334444444457889999999999999999866 78999999999999999999998887  58999998888864 557


Q ss_pred             CceeEEEecc
Q 027913          193 ASVDAVVGTL  202 (217)
Q Consensus       193 ~sfD~V~~~~  202 (217)
                      ++||+|++..
T Consensus        88 ~~fD~v~~~~   97 (185)
T 3mti_A           88 EPIRAAIFNL   97 (185)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCcCEEEEeC
Confidence            8899998873

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.58  E-value=3.9e-15  Score=116.74  Aligned_cols=88  Identities=23%  Similarity=0.290  Sum_probs=76.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++....+++|+|+|+.+++.++++...     .++.++++|+..+++++++||+|++..+
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-----TGITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-----SSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-----CCceEEEcChhhccCCCCCceEEEEecc
Confidence            47889999999999999998865333999999999999999987532     3689999999999888899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|++
T Consensus       117 l~~~~~~~~~l~~  129 (243)
T 3bkw_A          117 LHYVEDVARLFRT  129 (243)
T ss_dssp             GGGCSCHHHHHHH
T ss_pred             ccccchHHHHHHH
Confidence            9999999888764

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.58  E-value=2.7e-15  Score=118.00  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=78.0

Q ss_pred             cCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (217)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~  200 (217)
                      ..++.+|||||||+|..+.++++..+.+++|||+++.|++.|+++....+   .+++++.+|++.+  ++++++||.|+.
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC---CceEEEeehHHhhcccccccCCceEEE
Confidence            35889999999999999999987666789999999999999999987766   4789999998765  478889999973


Q ss_pred             -----cccccccCChhhhhcCC
Q 027913          201 -----TLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       201 -----~~~l~~~~d~~~~L~e~  217 (217)
                           ...++|+.+++.+++|+
T Consensus       135 D~~~~~~~~~~~~~~~~~~~e~  156 (236)
T 3orh_A          135 DTYPLSEETWHTHQFNFIKNHA  156 (236)
T ss_dssp             CCCCCBGGGTTTHHHHHHHHTH
T ss_pred             eeeecccchhhhcchhhhhhhh
Confidence                 66788888888887763

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.58  E-value=7e-15  Score=115.05  Aligned_cols=84  Identities=18%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      ++.....++.+|||||||+|.++..+++. +.+++|+|+|+.|++.++++.       .++.++++|+..+++ +++||+
T Consensus        33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~  103 (239)
T 3bxo_A           33 LVRSRTPEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSA  103 (239)
T ss_dssp             HHHHHCTTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEE
T ss_pred             HHHHhcCCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcE
Confidence            33333347789999999999999998864 348999999999999999874       468999999999887 678999


Q ss_pred             EEecc-cccccCCh
Q 027913          198 VVGTL-VLCSVKDV  210 (217)
Q Consensus       198 V~~~~-~l~~~~d~  210 (217)
                      |++.. +++|++++
T Consensus       104 v~~~~~~~~~~~~~  117 (239)
T 3bxo_A          104 VVSMFSSVGYLKTT  117 (239)
T ss_dssp             EEECTTGGGGCCSH
T ss_pred             EEEcCchHhhcCCH
Confidence            99654 99999654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.58  E-value=2e-15  Score=112.36  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++.. .+++|+|+++.+++.++++     .  .+++++.+|   +++++++||+|++..+
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~--~~v~~~~~d---~~~~~~~~D~v~~~~~   84 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK-----F--DSVITLSDP---KEIPDNSVDFILFANS   84 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH-----C--TTSEEESSG---GGSCTTCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh-----C--CCcEEEeCC---CCCCCCceEEEEEccc
Confidence            477799999999999999998654 4999999999999999988     1  588999999   6778899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|++
T Consensus        85 l~~~~~~~~~l~~   97 (170)
T 3i9f_A           85 FHDMDDKQHVISE   97 (170)
T ss_dssp             STTCSCHHHHHHH
T ss_pred             hhcccCHHHHHHH
Confidence            9999999888765

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=1.1e-14  Score=117.31  Aligned_cols=86  Identities=21%  Similarity=0.230  Sum_probs=76.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++   +++++++|+..+++ +++||+|++..++
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~-~~~fD~i~~~~~~  194 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL---NISTALYDINAANI-QENYDFIVSTVVF  194 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCGGGCCC-CSCEEEEEECSSG
T ss_pred             CCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC---ceEEEEeccccccc-cCCccEEEEccch
Confidence            7899999999999999999865 66999999999999999999988875   79999999999887 7899999999999


Q ss_pred             cccCChh--hhhc
Q 027913          205 CSVKDVD--MTLQ  215 (217)
Q Consensus       205 ~~~~d~~--~~L~  215 (217)
                      +|++++.  .+|+
T Consensus       195 ~~~~~~~~~~~l~  207 (286)
T 3m70_A          195 MFLNRERVPSIIK  207 (286)
T ss_dssp             GGSCGGGHHHHHH
T ss_pred             hhCCHHHHHHHHH
Confidence            9996543  5554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.57  E-value=3.5e-14  Score=114.42  Aligned_cols=86  Identities=10%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             CCCCeEEEECCcCCcch-HhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNL-KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++ ..+++..+.+|+|+|++++|++.|++++...++  .+++|+++|+..++  +++||+|++..
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl--~~v~~v~gDa~~l~--d~~FDvV~~~a  196 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV--DGVNVITGDETVID--GLEFDVLMVAA  196 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC--CSEEEEESCGGGGG--GCCCSEEEECT
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC--CCeEEEECchhhCC--CCCcCEEEECC
Confidence            68899999999999776 445556788999999999999999999998888  69999999999886  68999999865


Q ss_pred             cccccCChhhhhcC
Q 027913          203 VLCSVKDVDMTLQA  216 (217)
Q Consensus       203 ~l~~~~d~~~~L~e  216 (217)
                      .   ++++.+++++
T Consensus       197 ~---~~d~~~~l~e  207 (298)
T 3fpf_A          197 L---AEPKRRVFRN  207 (298)
T ss_dssp             T---CSCHHHHHHH
T ss_pred             C---ccCHHHHHHH
Confidence            5   5677666654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=9.2e-15  Score=121.35  Aligned_cols=90  Identities=21%  Similarity=0.280  Sum_probs=76.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++++|||||||+|.++..+++.+..+|+|+|+| +|++.|++++...++. .+++++++|++.+++++++||+|++..+
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCC-CcEEEEECcHHHccCCCCceEEEEEccc
Confidence            3789999999999999999987755699999999 5999999999998885 5699999999999988899999999765


Q ss_pred             ccc---cCChhhhhc
Q 027913          204 LCS---VKDVDMTLQ  215 (217)
Q Consensus       204 l~~---~~d~~~~L~  215 (217)
                      .++   ..+++.+|+
T Consensus       143 ~~~l~~~~~~~~~l~  157 (349)
T 3q7e_A          143 GYCLFYESMLNTVLH  157 (349)
T ss_dssp             BBTBTBTCCHHHHHH
T ss_pred             cccccCchhHHHHHH
Confidence            444   366665554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.56  E-value=8.5e-15  Score=121.13  Aligned_cols=100  Identities=24%  Similarity=0.296  Sum_probs=79.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +.+.+.+.+. .++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++++..++. .+++++.+|++++++++
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLE-DTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSC
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCC-CcEEEEEeeHHHhcCCC
Confidence            3344444333 57889999999999999998876556999999996 999999999988875 68999999999999888


Q ss_pred             CceeEEEecc---cccccCChhhhhc
Q 027913          193 ASVDAVVGTL---VLCSVKDVDMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~---~l~~~~d~~~~L~  215 (217)
                      ++||+|++..   .+.+..++..+|+
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~  155 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLY  155 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHH
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHH
Confidence            8999999877   4555555555543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.56  E-value=1.4e-14  Score=113.67  Aligned_cols=86  Identities=23%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      .+...+. ++.+|||||||+|.++..+++.  .+++|+|+|+.+++.|+++....+   .+++++++|+..++++ ++||
T Consensus        26 ~~~~~~~-~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~d~~~~~~~-~~fD   98 (243)
T 3d2l_A           26 WVLEQVE-PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN---RHVDFWVQDMRELELP-EPVD   98 (243)
T ss_dssp             HHHHHSC-TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT---CCCEEEECCGGGCCCS-SCEE
T ss_pred             HHHHHcC-CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC---CceEEEEcChhhcCCC-CCcC
Confidence            3444443 5689999999999999998855  799999999999999999987766   4789999999998876 7899


Q ss_pred             EEEecc-cccccCC
Q 027913          197 AVVGTL-VLCSVKD  209 (217)
Q Consensus       197 ~V~~~~-~l~~~~d  209 (217)
                      +|++.. +++|+.+
T Consensus        99 ~v~~~~~~~~~~~~  112 (243)
T 3d2l_A           99 AITILCDSLNYLQT  112 (243)
T ss_dssp             EEEECTTGGGGCCS
T ss_pred             EEEEeCCchhhcCC
Confidence            999987 9999944

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.56  E-value=1.8e-14  Score=111.76  Aligned_cols=78  Identities=27%  Similarity=0.464  Sum_probs=70.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++.     +|+|+++.+++.++++         ++.++++|+..+++++++||+|++..++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTI  112 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc---------CCEEEEcccccCCCCCCCeeEEEEcchH
Confidence            4889999999999999988743     9999999999999975         4689999999999888899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++++..+|++
T Consensus       113 ~~~~~~~~~l~~  124 (219)
T 1vlm_A          113 CFVDDPERALKE  124 (219)
T ss_dssp             GGSSCHHHHHHH
T ss_pred             hhccCHHHHHHH
Confidence            999999888764

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.56  E-value=2.5e-15  Score=113.06  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=71.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..++. .++.+|+++|+|+.|++.+++++...|+. .++++  .|.... .+.++||+|+...
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-~~v~~--~d~~~~-~~~~~~DvVLa~k  123 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-IKYRF--LNKESD-VYKGTYDVVFLLK  123 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-SEEEE--ECCHHH-HTTSEEEEEEEET
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ccEEE--eccccc-CCCCCcChhhHhh
Confidence            3788999999999999999875 45679999999999999999999988874 35666  665544 3568899999999


Q ss_pred             cccccCChhhhh
Q 027913          203 VLCSVKDVDMTL  214 (217)
Q Consensus       203 ~l~~~~d~~~~L  214 (217)
                      ++|++++.+.++
T Consensus       124 ~LHlL~~~~~al  135 (200)
T 3fzg_A          124 MLPVLKQQDVNI  135 (200)
T ss_dssp             CHHHHHHTTCCH
T ss_pred             HHHhhhhhHHHH
Confidence            999996655544

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.56  E-value=1.2e-14  Score=129.99  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=75.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHc------CCCCCCeEEEecccccccCCCCce
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAA------GLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .++.+|||||||+|.++..+++..  ..+|+|+|+|+.|++.|++++...      ++  .+++|+++|+..+++++++|
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl--~nVefiqGDa~dLp~~d~sF  797 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV--KSATLYDGSILEFDSRLHDV  797 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC--SEEEEEESCTTSCCTTSCSC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC--CceEEEECchHhCCcccCCe
Confidence            378899999999999999998643  279999999999999999977543      33  58999999999999988999


Q ss_pred             eEEEecccccccCChh
Q 027913          196 DAVVGTLVLCSVKDVD  211 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~  211 (217)
                      |+|++..+++|++++.
T Consensus       798 DlVV~~eVLeHL~dp~  813 (950)
T 3htx_A          798 DIGTCLEVIEHMEEDQ  813 (950)
T ss_dssp             CEEEEESCGGGSCHHH
T ss_pred             eEEEEeCchhhCChHH
Confidence            9999999999999866

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.56  E-value=6.7e-15  Score=119.85  Aligned_cols=92  Identities=13%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC----CCeEEEeccc------ccc--cCCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL----TNFKFLQAVG------EAI--PVSD  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~v~~~~~d~------~~l--~~~~  192 (217)
                      ++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++.+.+...    -+++|.+.|+      +.+  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            478999999999987776665666799999999999999999987765310    0267888888      444  3567


Q ss_pred             CceeEEEeccccccc---CChhhhhcC
Q 027913          193 ASVDAVVGTLVLCSV---KDVDMTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~---~d~~~~L~e  216 (217)
                      ++||+|+|.+++||+   .+...+|++
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~  154 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNN  154 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHH
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHH
Confidence            899999999999986   334455543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.56  E-value=1.5e-14  Score=109.66  Aligned_cols=90  Identities=20%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      .++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++++...++  .+++++++|+.+++  +++++||+|++.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL--SGATLRRGAVAAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC--SCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC--CceEEEEccHHHHHhhccCCCccEEEEC
Confidence            37889999999999999987766666899999999999999999998887  58999999998874  456899999999


Q ss_pred             cccccc-CChhhhhc
Q 027913          202 LVLCSV-KDVDMTLQ  215 (217)
Q Consensus       202 ~~l~~~-~d~~~~L~  215 (217)
                      ..+++. ++...+++
T Consensus       121 ~p~~~~~~~~~~~l~  135 (189)
T 3p9n_A          121 PPYNVDSADVDAILA  135 (189)
T ss_dssp             CCTTSCHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHH
Confidence            887774 45555543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.55  E-value=3.8e-14  Score=108.99  Aligned_cols=89  Identities=21%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...++  .+++++.+|+...+.++++||
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~D  145 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDL--HNVSTRHGDGWQGWQARAPFD  145 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCC--CceEEEECCcccCCccCCCcc
Confidence            334443 57889999999999999998865 77999999999999999999998887  489999999988766678999


Q ss_pred             EEEecccccccCC
Q 027913          197 AVVGTLVLCSVKD  209 (217)
Q Consensus       197 ~V~~~~~l~~~~d  209 (217)
                      +|++..+++++++
T Consensus       146 ~i~~~~~~~~~~~  158 (210)
T 3lbf_A          146 AIIVTAAPPEIPT  158 (210)
T ss_dssp             EEEESSBCSSCCT
T ss_pred             EEEEccchhhhhH
Confidence            9999999999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.55  E-value=3.8e-14  Score=112.72  Aligned_cols=92  Identities=22%  Similarity=0.358  Sum_probs=74.6

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      ..++..+..++.+|||||||+|.++..+++. +.+++|+|+|+.|++.++++..      .  .++++|+..+++++++|
T Consensus        45 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~------~--~~~~~d~~~~~~~~~~f  115 (260)
T 2avn_A           45 GSFLEEYLKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV------K--NVVEAKAEDLPFPSGAF  115 (260)
T ss_dssp             HHHHHHHCCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC------S--CEEECCTTSCCSCTTCE
T ss_pred             HHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC------C--CEEECcHHHCCCCCCCE
Confidence            3344444347889999999999999999854 6799999999999999998742      1  28999999999888999


Q ss_pred             eEEEeccccccc-CChhhhhcC
Q 027913          196 DAVVGTLVLCSV-KDVDMTLQA  216 (217)
Q Consensus       196 D~V~~~~~l~~~-~d~~~~L~e  216 (217)
                      |+|++..+++|+ +++..+|++
T Consensus       116 D~v~~~~~~~~~~~~~~~~l~~  137 (260)
T 2avn_A          116 EAVLALGDVLSYVENKDKAFSE  137 (260)
T ss_dssp             EEEEECSSHHHHCSCHHHHHHH
T ss_pred             EEEEEcchhhhccccHHHHHHH
Confidence            999998876665 778777764

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.55  E-value=1.8e-14  Score=113.18  Aligned_cols=89  Identities=17%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++. .+++++++|+..++ ++++||+|++...+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~-~~~~~D~v~~~~~~  154 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIA-DKIEFICGDFLLLA-SFLKADVVFLSPPW  154 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred             CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCC-cCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence            7889999999999999999864 589999999999999999999988874 48999999999987 56899999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      ++..++...+.+
T Consensus       155 ~~~~~~~~~~~~  166 (241)
T 3gdh_A          155 GGPDYATAETFD  166 (241)
T ss_dssp             SSGGGGGSSSBC
T ss_pred             CCcchhhhHHHH
Confidence            998877655543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.55  E-value=1.6e-14  Score=117.15  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...++. ..+++++++|+..+++ ++
T Consensus        72 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  149 (299)
T 3g2m_A           72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DK  149 (299)
T ss_dssp             HHHHHHHHCCCCSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SC
T ss_pred             HHHHHHhhCCCCCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CC
Confidence            34455555545669999999999999999854 678999999999999999998765420 0378999999999987 68


Q ss_pred             ceeEEEec-ccccccCC--hhhhhc
Q 027913          194 SVDAVVGT-LVLCSVKD--VDMTLQ  215 (217)
Q Consensus       194 sfD~V~~~-~~l~~~~d--~~~~L~  215 (217)
                      +||+|++. .+++++++  ...+|+
T Consensus       150 ~fD~v~~~~~~~~~~~~~~~~~~l~  174 (299)
T 3g2m_A          150 RFGTVVISSGSINELDEADRRGLYA  174 (299)
T ss_dssp             CEEEEEECHHHHTTSCHHHHHHHHH
T ss_pred             CcCEEEECCcccccCCHHHHHHHHH
Confidence            99999965 56666652  345554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.54  E-value=2.9e-14  Score=110.37  Aligned_cols=91  Identities=22%  Similarity=0.288  Sum_probs=74.2

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVS  191 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~  191 (217)
                      ..+++.+. .++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++        .++.+...|+..+   ++.
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~  112 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLAEAKVP  112 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHHTTCSC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhcccccc
Confidence            33444444 47799999999999999999855 77999999999999999987        3567899998887   544


Q ss_pred             C-CceeEEEecccccccCChhhhhcC
Q 027913          192 D-ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       192 ~-~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      . ++||+|++..+++ ..++..+|++
T Consensus       113 ~~~~fD~v~~~~~l~-~~~~~~~l~~  137 (227)
T 3e8s_A          113 VGKDYDLICANFALL-HQDIIELLSA  137 (227)
T ss_dssp             CCCCEEEEEEESCCC-SSCCHHHHHH
T ss_pred             cCCCccEEEECchhh-hhhHHHHHHH
Confidence            4 4599999999999 8888887764

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.54  E-value=2e-15  Score=128.04  Aligned_cols=101  Identities=19%  Similarity=0.318  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ...+...+++.+. .++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++    ++......+...+.+.++
T Consensus        92 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~  166 (416)
T 4e2x_A           92 FAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVR  166 (416)
T ss_dssp             HHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcc
Confidence            4455556666665 56789999999999999999854 66999999999999999876    332111223455666777


Q ss_pred             CCCCceeEEEecccccccCChhhhhcC
Q 027913          190 VSDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +++++||+|++.++++|++|+..+|++
T Consensus       167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~  193 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHIPYVQSVLEG  193 (416)
T ss_dssp             HHHCCEEEEEEESCGGGCTTHHHHHHH
T ss_pred             cCCCCEEEEEECChHHhcCCHHHHHHH
Confidence            778999999999999999999998875

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.53  E-value=8.5e-15  Score=112.57  Aligned_cols=86  Identities=14%  Similarity=0.084  Sum_probs=72.2

Q ss_pred             HHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      +..+..++.+|||||||+|.++..+++....+++|+|+++.+++.++++...  .  .++.++++|+..+++++++||+|
T Consensus        36 l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~--~~i~~~~~d~~~~~~~~~~fD~v  111 (215)
T 2pxx_A           36 LEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--V--PQLRWETMDVRKLDFPSASFDVV  111 (215)
T ss_dssp             HGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--C--TTCEEEECCTTSCCSCSSCEEEE
T ss_pred             HHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--C--CCcEEEEcchhcCCCCCCcccEE
Confidence            3333357889999999999999998865434899999999999999998753  2  47899999999998888999999


Q ss_pred             EecccccccC
Q 027913          199 VGTLVLCSVK  208 (217)
Q Consensus       199 ~~~~~l~~~~  208 (217)
                      ++..+++++.
T Consensus       112 ~~~~~~~~~~  121 (215)
T 2pxx_A          112 LEKGTLDALL  121 (215)
T ss_dssp             EEESHHHHHT
T ss_pred             EECcchhhhc
Confidence            9999887765

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.53  E-value=4.3e-15  Score=118.55  Aligned_cols=92  Identities=14%  Similarity=0.048  Sum_probs=67.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL---------------------------T  176 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------~  176 (217)
                      .++.+|||||||+|.+...++.....+|+|+|+|+.|++.|+++++......                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4678999999999988777664433479999999999999998875431000                           1


Q ss_pred             CeE-EEecccccc-cC---CCCceeEEEeccccccc----CChhhhhc
Q 027913          177 NFK-FLQAVGEAI-PV---SDASVDAVVGTLVLCSV----KDVDMTLQ  215 (217)
Q Consensus       177 ~v~-~~~~d~~~l-~~---~~~sfD~V~~~~~l~~~----~d~~~~L~  215 (217)
                      ++. ++++|+... |+   ..++||+|+++++|||+    +++..+|+
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~  181 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALC  181 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHH
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHH
Confidence            243 889999874 43   35799999999999996    34455554

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.53  E-value=7.7e-14  Score=113.87  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC-----CCCCeEEEeccccccc----CC--CC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-----PLTNFKFLQAVGEAIP----VS--DA  193 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----~~~~v~~~~~d~~~l~----~~--~~  193 (217)
                      ++.+|||||||+|.++..+++..+.+++|+|+|+.|++.++++....+.     ...++.++++|++.++    ++  ++
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            6789999999999999999876677999999999999999998865420     0147899999999876    53  45


Q ss_pred             ceeEEEeccccccc-CC---hhhhhc
Q 027913          194 SVDAVVGTLVLCSV-KD---VDMTLQ  215 (217)
Q Consensus       194 sfD~V~~~~~l~~~-~d---~~~~L~  215 (217)
                      +||+|++.+++||+ .+   +..+|+
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~  139 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLR  139 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHH
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHH
Confidence            99999999999998 44   345554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=1.9e-14  Score=108.74  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=74.8

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      .++..+..++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++.       .++.++++|+..+++++++||
T Consensus        38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D  109 (195)
T 3cgg_A           38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFD  109 (195)
T ss_dssp             HHHHHHSCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEE
T ss_pred             HHHHHhccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCcee
Confidence            344445557889999999999999999865 679999999999999999875       468999999999888888999


Q ss_pred             EEEec-ccccccCC--hhhhhc
Q 027913          197 AVVGT-LVLCSVKD--VDMTLQ  215 (217)
Q Consensus       197 ~V~~~-~~l~~~~d--~~~~L~  215 (217)
                      +|++. .+++|+++  ...+|+
T Consensus       110 ~i~~~~~~~~~~~~~~~~~~l~  131 (195)
T 3cgg_A          110 LIVSAGNVMGFLAEDGREPALA  131 (195)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHH
T ss_pred             EEEECCcHHhhcChHHHHHHHH
Confidence            99998 78888843  344443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=4.3e-14  Score=105.83  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||+|||+|.++..+++ .+.+++|+|+++.+++.+++++...++  .+++++++|+.. ++++++||+|++..+
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~d~~~-~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI--KNCQIIKGRAED-VLDKLEFNKAFIGGT  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC--CSEEEEESCHHH-HGGGCCCSEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC--CcEEEEECCccc-cccCCCCcEEEECCc
Confidence            4778999999999999999986 778999999999999999999998887  589999999988 667789999999888


Q ss_pred             ccccCChhhhhc
Q 027913          204 LCSVKDVDMTLQ  215 (217)
Q Consensus       204 l~~~~d~~~~L~  215 (217)
                          .++..+|+
T Consensus       110 ----~~~~~~l~  117 (183)
T 2yxd_A          110 ----KNIEKIIE  117 (183)
T ss_dssp             ----SCHHHHHH
T ss_pred             ----ccHHHHHH
Confidence                44455443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.52  E-value=2e-14  Score=118.39  Aligned_cols=88  Identities=24%  Similarity=0.309  Sum_probs=74.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+++....+|+|+|++ .|++.|++++...++. .+++++.+|++++++++++||+|++..+.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCC-CCEEEEECchhhccCCCCcccEEEEeCch
Confidence            788999999999999998887655699999999 6999999999988875 67999999999998887899999998544


Q ss_pred             c---ccCChhhhh
Q 027913          205 C---SVKDVDMTL  214 (217)
Q Consensus       205 ~---~~~d~~~~L  214 (217)
                      +   +..++..+|
T Consensus       116 ~~l~~~~~~~~~l  128 (328)
T 1g6q_1          116 YFLLYESMMDTVL  128 (328)
T ss_dssp             TTBSTTCCHHHHH
T ss_pred             hhcccHHHHHHHH
Confidence            4   444455554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.52  E-value=5.8e-14  Score=117.63  Aligned_cols=98  Identities=22%  Similarity=0.309  Sum_probs=78.5

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+..... .++++|||||||+|.++..+++....+|+|+|+| .|++.|++++...++. .+++++++|+++++++ 
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~-  127 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLD-HIVEVIEGSVEDISLP-  127 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCT-TTEEEEESCGGGCCCS-
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCC-CeEEEEECchhhcCcC-
Confidence            3333433333 5788999999999999999987654599999999 9999999999998886 5799999999999877 


Q ss_pred             CceeEEEeccccccc---CChhhhh
Q 027913          193 ASVDAVVGTLVLCSV---KDVDMTL  214 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~---~d~~~~L  214 (217)
                      ++||+|++..+.+++   .+++.+|
T Consensus       128 ~~~D~Iv~~~~~~~l~~e~~~~~~l  152 (376)
T 3r0q_C          128 EKVDVIISEWMGYFLLRESMFDSVI  152 (376)
T ss_dssp             SCEEEEEECCCBTTBTTTCTHHHHH
T ss_pred             CcceEEEEcChhhcccchHHHHHHH
Confidence            899999997766655   3444444

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.52  E-value=5.3e-14  Score=113.53  Aligned_cols=92  Identities=14%  Similarity=0.087  Sum_probs=68.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc-----------------CCC-----------CC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA-----------------GLP-----------LT  176 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~-----------------~~~-----------~~  176 (217)
                      ++.+|||||||+|.+...++...+.+|+|+|+|+.|++.|++++.+.                 +..           ..
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999999554444445679999999999999999865321                 100           00


Q ss_pred             CeEEEeccccc-ccC-----CCCceeEEEecccccc----cCChhhhhcC
Q 027913          177 NFKFLQAVGEA-IPV-----SDASVDAVVGTLVLCS----VKDVDMTLQA  216 (217)
Q Consensus       177 ~v~~~~~d~~~-l~~-----~~~sfD~V~~~~~l~~----~~d~~~~L~e  216 (217)
                      .++++++|+.. +|+     ++++||+|+++++|+|    ++++..+|++
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  200 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDH  200 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHH
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHH
Confidence            15678889987 653     4467999999999999    6677777764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.52  E-value=1.1e-13  Score=114.75  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      .+...+++.+. .++.+|||||||+|.++..+++....+|+|+|+|+ |++.|+++++..++. .+++++.+|+++++++
T Consensus        37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~-~~v~~~~~d~~~~~~~  114 (348)
T 2y1w_A           37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVSLP  114 (348)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCCS
T ss_pred             HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCC-CcEEEEEcchhhCCCC
Confidence            34455555554 57889999999999999998876556999999996 899999999888875 6899999999998766


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                       ++||+|++..+++|+.+
T Consensus       115 -~~~D~Ivs~~~~~~~~~  131 (348)
T 2y1w_A          115 -EQVDIIISEPMGYMLFN  131 (348)
T ss_dssp             -SCEEEEEECCCBTTBTT
T ss_pred             -CceeEEEEeCchhcCCh
Confidence             68999999998888753

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.51  E-value=5e-14  Score=107.25  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|.++..+++.  +..+++|+|+++.+++.|++++...++. .+++++++|+..++ +.+++||+|++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI-DRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCG-GGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHhhhccCCceEEEE
Confidence            47889999999999999998874  4569999999999999999999888764 58999999998886 66689999998


Q ss_pred             cccc
Q 027913          201 TLVL  204 (217)
Q Consensus       201 ~~~l  204 (217)
                      ...+
T Consensus       100 ~~~~  103 (197)
T 3eey_A          100 NLGY  103 (197)
T ss_dssp             EESB
T ss_pred             cCCc
Confidence            8655

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.51  E-value=9.2e-14  Score=103.80  Aligned_cols=91  Identities=11%  Similarity=0.108  Sum_probs=72.3

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPV  190 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~  190 (217)
                      +...+++.+. .++.+|||||||+|.++..+++. ++.+++|+|+++.+++.+++++...++. .++ ++.+|... ++.
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~-~~~~d~~~~~~~   90 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVS-DRI-AVQQGAPRAFDD   90 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCT-TSE-EEECCTTGGGGG
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCC-CCE-EEecchHhhhhc
Confidence            3344555554 46779999999999999998864 4679999999999999999999888874 478 88888744 443


Q ss_pred             CCCceeEEEecccccc
Q 027913          191 SDASVDAVVGTLVLCS  206 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~  206 (217)
                      .+++||+|++..++++
T Consensus        91 ~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             CCSCCSEEEECC-TTC
T ss_pred             cCCCCCEEEECCcccH
Confidence            3378999999999988

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.50  E-value=4.5e-14  Score=107.87  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++ +|||||||+|.++..+++. +.+++|+|+|+.+++.++++....+.   ++.++++|+..+++++++||+|++.+..
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~v~~~~~~  104 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDIVADAWEGIVSIFCH  104 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSCCTTTCSEEEEECCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCCCcCCccEEEEEhhc
Confidence            44 9999999999999998854 67999999999999999999987764   7899999999998888999999996432


Q ss_pred             cccCChhhhhc
Q 027913          205 CSVKDVDMTLQ  215 (217)
Q Consensus       205 ~~~~d~~~~L~  215 (217)
                      .+..++..+|+
T Consensus       105 ~~~~~~~~~l~  115 (202)
T 2kw5_A          105 LPSSLRQQLYP  115 (202)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            22234555554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.50  E-value=5.3e-14  Score=109.09  Aligned_cols=89  Identities=19%  Similarity=0.221  Sum_probs=75.0

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc--ccCCCCce
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA--IPVSDASV  195 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~--l~~~~~sf  195 (217)
                      +++.+..++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++.         .+++.+|+..  .++++++|
T Consensus        25 l~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           25 LLKHIKKEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             HHTTCCTTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCE
T ss_pred             HHHHhccCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCcc
Confidence            33333347889999999999999999866 689999999999999998653         2689999987  56778899


Q ss_pred             eEEEecccccccCChhhhhcC
Q 027913          196 DAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~e  216 (217)
                      |+|++..+++|++++..+|++
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~  115 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEK  115 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHH
T ss_pred             CEEEECChhhhcCCHHHHHHH
Confidence            999999999999999888765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.50  E-value=1.6e-13  Score=105.18  Aligned_cols=94  Identities=11%  Similarity=0.032  Sum_probs=75.7

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .++..+. .++.+|||||||+|.++..+++. +..+++|+|+++.+++.+++++...++  .+++++.+|+.......++
T Consensus        31 ~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           31 VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA--RNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC--TTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeCChhhhhhcCCC
Confidence            3445554 57889999999999999998863 457999999999999999999988887  5899999999665434478


Q ss_pred             eeEEEecccccccCChhhhhc
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ||+|++..+++   ++..+|+
T Consensus       109 ~D~i~~~~~~~---~~~~~l~  126 (204)
T 3e05_A          109 PDRVFIGGSGG---MLEEIID  126 (204)
T ss_dssp             CSEEEESCCTT---CHHHHHH
T ss_pred             CCEEEECCCCc---CHHHHHH
Confidence            99999988776   4444443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.50  E-value=1.6e-13  Score=105.45  Aligned_cols=85  Identities=15%  Similarity=0.125  Sum_probs=70.8

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      ++..+. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++++..++. .+++++.+|+.........||
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~~D  124 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLS-PRMRAVQGTAPAALADLPLPE  124 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCTTGGGTTSCCCS
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCEEEEeCchhhhcccCCCCC
Confidence            344444 47789999999999999999876 789999999999999999999988874 489999999988433345799


Q ss_pred             EEEecccc
Q 027913          197 AVVGTLVL  204 (217)
Q Consensus       197 ~V~~~~~l  204 (217)
                      +|++...+
T Consensus       125 ~v~~~~~~  132 (204)
T 3njr_A          125 AVFIGGGG  132 (204)
T ss_dssp             EEEECSCC
T ss_pred             EEEECCcc
Confidence            99987754

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.50  E-value=1.1e-13  Score=104.46  Aligned_cols=96  Identities=17%  Similarity=0.167  Sum_probs=76.3

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...++...+++++.+|+... +++++||
T Consensus        44 l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~D  121 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VKDRKYN  121 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CTTSCEE
T ss_pred             HHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cccCCce
Confidence            344443 47789999999999999998866 78999999999999999999988887311399999999874 4567899


Q ss_pred             EEEecccccc-cCChhhhhc
Q 027913          197 AVVGTLVLCS-VKDVDMTLQ  215 (217)
Q Consensus       197 ~V~~~~~l~~-~~d~~~~L~  215 (217)
                      +|++...+++ ..+...+|+
T Consensus       122 ~v~~~~~~~~~~~~~~~~l~  141 (194)
T 1dus_A          122 KIITNPPIRAGKEVLHRIIE  141 (194)
T ss_dssp             EEEECCCSTTCHHHHHHHHH
T ss_pred             EEEECCCcccchhHHHHHHH
Confidence            9999988886 334444443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.49  E-value=9.9e-14  Score=108.10  Aligned_cols=77  Identities=21%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccc-ccccCC-CCc
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVG-EAIPVS-DAS  194 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~-~~l~~~-~~s  194 (217)
                      .++..+..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++.       .+++++++|+ +.+|++ +++
T Consensus        40 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~~  111 (226)
T 3m33_A           40 LWLSRLLTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANA-------PHADVYEWNGKGELPAGLGAP  111 (226)
T ss_dssp             HHHHHHCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHC-------TTSEEEECCSCSSCCTTCCCC
T ss_pred             HHHHhcCCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhC-------CCceEEEcchhhccCCcCCCC
Confidence            344444457889999999999999999865 679999999999999999882       5789999999 678887 899


Q ss_pred             eeEEEec
Q 027913          195 VDAVVGT  201 (217)
Q Consensus       195 fD~V~~~  201 (217)
                      ||+|++.
T Consensus       112 fD~v~~~  118 (226)
T 3m33_A          112 FGLIVSR  118 (226)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9999987

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.49  E-value=1.8e-13  Score=104.93  Aligned_cols=87  Identities=8%  Similarity=-0.007  Sum_probs=72.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||+|||+|.++..+++....+|+|+|+|+.|++.|++++...++  .+++++++|+.. ++..+++||+|++...
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~--~~v~~~~~D~~~~~~~~~~~fD~V~~~~p  131 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPP  131 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEECCHHHHHhhcCCCCCEEEECCC
Confidence            6789999999999999887655556899999999999999999988887  589999999987 4666679999999877


Q ss_pred             ccccCChhhhh
Q 027913          204 LCSVKDVDMTL  214 (217)
Q Consensus       204 l~~~~d~~~~L  214 (217)
                      ++ ..+...++
T Consensus       132 ~~-~~~~~~~l  141 (202)
T 2fpo_A          132 FR-RGLLEETI  141 (202)
T ss_dssp             SS-TTTHHHHH
T ss_pred             CC-CCcHHHHH
Confidence            44 44444444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.49  E-value=8.9e-14  Score=108.03  Aligned_cols=82  Identities=22%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c--CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P--VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~--~~~~sfD~V~  199 (217)
                      ..+.+|||||||+|.++..+++ .++..|+|||+++.+++.|++++...++  .|++++++|+..+ +  +++++||.|+
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l--~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL--SNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC--SSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHcCCCChheEE
Confidence            3678999999999999999986 5677999999999999999999998887  5899999999885 4  7889999999


Q ss_pred             eccccccc
Q 027913          200 GTLVLCSV  207 (217)
Q Consensus       200 ~~~~l~~~  207 (217)
                      +.+...+.
T Consensus       111 ~~~~~p~~  118 (218)
T 3dxy_A          111 LFFPDPWH  118 (218)
T ss_dssp             EESCCCCC
T ss_pred             EeCCCCcc
Confidence            88655543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.49  E-value=3.4e-14  Score=112.74  Aligned_cols=93  Identities=14%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC---------------------------C
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL---------------------------T  176 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------~  176 (217)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.|++.+++++...+...                           .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4668999999999999988875433489999999999999998875432000                           0


Q ss_pred             Ce-EEEeccccccc-CCC---CceeEEEeccccc----ccCChhhhhcC
Q 027913          177 NF-KFLQAVGEAIP-VSD---ASVDAVVGTLVLC----SVKDVDMTLQA  216 (217)
Q Consensus       177 ~v-~~~~~d~~~l~-~~~---~sfD~V~~~~~l~----~~~d~~~~L~e  216 (217)
                      ++ .++++|+...+ +++   ++||+|++.++++    +++++..+|++
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~  183 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRN  183 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHH
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHH
Confidence            27 89999998864 355   8999999999999    55566666653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.49  E-value=1.6e-13  Score=106.06  Aligned_cols=81  Identities=21%  Similarity=0.343  Sum_probs=71.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~  200 (217)
                      .++.+|||||||+|.++..+++ .++.+++|+|+++.+++.|++++...++  .++.++++|+..++  +++++||+|++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            3678999999999999999886 4577999999999999999999988887  58999999999887  77889999999


Q ss_pred             cccccc
Q 027913          201 TLVLCS  206 (217)
Q Consensus       201 ~~~l~~  206 (217)
                      .+...+
T Consensus       118 ~~~~~~  123 (214)
T 1yzh_A          118 NFSDPW  123 (214)
T ss_dssp             ESCCCC
T ss_pred             ECCCCc
Confidence            876543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.49  E-value=7.1e-14  Score=107.15  Aligned_cols=89  Identities=7%  Similarity=-0.015  Sum_probs=71.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC--CCCc-eeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV--SDAS-VDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~--~~~s-fD~V~~~  201 (217)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...++...+++++++|+.++..  ++++ ||+|++.
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            678999999999999988665555689999999999999999998887621389999999987642  3678 9999998


Q ss_pred             ccccccCChhhhh
Q 027913          202 LVLCSVKDVDMTL  214 (217)
Q Consensus       202 ~~l~~~~d~~~~L  214 (217)
                      ..++ ..+...++
T Consensus       133 ~~~~-~~~~~~~l  144 (201)
T 2ift_A          133 PPFH-FNLAEQAI  144 (201)
T ss_dssp             CCSS-SCHHHHHH
T ss_pred             CCCC-CccHHHHH
Confidence            7754 44444444

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.49  E-value=1e-14  Score=118.09  Aligned_cols=92  Identities=14%  Similarity=0.123  Sum_probs=72.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCC-----------------------------
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP-----------------------------  174 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------------------------  174 (217)
                      ++++|||||||+|.++..+++. ++.+|+|+|+++.|++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            6889999999999999999874 4679999999999999999886543311                             


Q ss_pred             ---------------------------CCCeEEEeccccccc-----CCCCceeEEEecccccccC------ChhhhhcC
Q 027913          175 ---------------------------LTNFKFLQAVGEAIP-----VSDASVDAVVGTLVLCSVK------DVDMTLQA  216 (217)
Q Consensus       175 ---------------------------~~~v~~~~~d~~~l~-----~~~~sfD~V~~~~~l~~~~------d~~~~L~e  216 (217)
                                                 +.+++|+++|+...+     +.+++||+|++..+++|+.      ++..+|++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                       148999999997643     5678999999999998874      55555543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.48  E-value=3.6e-14  Score=118.63  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHH-------HHcCCCCCC
Q 027913          107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAA-------VAAGLPLTN  177 (217)
Q Consensus       107 ~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~-------~~~~~~~~~  177 (217)
                      |.+........+++.+. .++.+|||||||+|..+..++...+ .+++|||+++.+++.|+++.       ...|+...+
T Consensus       154 YGEt~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r  233 (438)
T 3uwp_A          154 YGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE  233 (438)
T ss_dssp             GGGTHHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE
T ss_pred             cCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            44444556667777776 6889999999999999998886434 46999999999999998754       334542258


Q ss_pred             eEEEecccccccCCC--CceeEEEecccccccCChhhhhcC
Q 027913          178 FKFLQAVGEAIPVSD--ASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       178 v~~~~~d~~~l~~~~--~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++|+++|+..+++.+  ..||+|+++..+ +.++....|+|
T Consensus       234 Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~E  273 (438)
T 3uwp_A          234 YTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKE  273 (438)
T ss_dssp             EEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHH
T ss_pred             eEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHH
Confidence            999999999998754  479999987765 45677766654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.48  E-value=3.9e-13  Score=102.93  Aligned_cols=80  Identities=19%  Similarity=0.145  Sum_probs=70.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++.+..+++|+|+++.+++.|++++...++.  +++++.+|+.+.  .+++||+|++...
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~--~~~~fD~i~~~~~  134 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY--DIALQKTSLLAD--VDGKFDLIVANIL  134 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC--CCEEEESSTTTT--CCSCEEEEEEESC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEecccccc--CCCCceEEEECCc
Confidence            478899999999999999988765569999999999999999999888873  599999999775  3589999999988


Q ss_pred             cccc
Q 027913          204 LCSV  207 (217)
Q Consensus       204 l~~~  207 (217)
                      ++++
T Consensus       135 ~~~~  138 (205)
T 3grz_A          135 AEIL  138 (205)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.48  E-value=9.7e-14  Score=109.15  Aligned_cols=85  Identities=19%  Similarity=0.180  Sum_probs=72.0

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC---CCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~---~~sfD~V~~  200 (217)
                      ++.+|||||||+|..+..++. .++.+|+|+|+|+.|++.+++++...++  .+++++++|++++++.   +++||+|++
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL--ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCEEEEeccHHHhcccccccCCccEEEE
Confidence            678999999999999988875 5677999999999999999999988887  4799999999998754   579999998


Q ss_pred             cccccccCChhhhhc
Q 027913          201 TLVLCSVKDVDMTLQ  215 (217)
Q Consensus       201 ~~~l~~~~d~~~~L~  215 (217)
                      ..    +.++..+++
T Consensus       148 ~~----~~~~~~~l~  158 (240)
T 1xdz_A          148 RA----VARLSVLSE  158 (240)
T ss_dssp             EC----CSCHHHHHH
T ss_pred             ec----cCCHHHHHH
Confidence            66    355555544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.48  E-value=1.5e-13  Score=106.33  Aligned_cols=80  Identities=16%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      ++.+|||||||+|.++..+++ .++.+++|+|+|+.+++.|++++...++  .+++++++|+..++  +++++||.|++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~--~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC--CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            678999999999999999986 4678999999999999999999988887  58999999999876  778899999886


Q ss_pred             ccccc
Q 027913          202 LVLCS  206 (217)
Q Consensus       202 ~~l~~  206 (217)
                      +...+
T Consensus       116 ~~~p~  120 (213)
T 2fca_A          116 FSDPW  120 (213)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            65443

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.47  E-value=6.2e-13  Score=106.75  Aligned_cols=99  Identities=15%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             HHHHHHHHhc--CCCCeEEEECCcC---CcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913          114 YKSQLFDNLR--GKAKKVLEIGIGT---GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (217)
Q Consensus       114 ~~~~i~~~~~--~~~~~vLDiGcG~---G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  187 (217)
                      +..++++.+.  ....+|||||||+   |.++..+.+ .++.+|+++|+|+.|++.|++++...    .+++|+++|+.+
T Consensus        64 ~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~----~~v~~~~~D~~~  139 (274)
T 2qe6_A           64 VLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD----PNTAVFTADVRD  139 (274)
T ss_dssp             HHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC----TTEEEEECCTTC
T ss_pred             HHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC----CCeEEEEeeCCC
Confidence            3344444443  2347999999999   987765554 46789999999999999999987431    589999999975


Q ss_pred             cc-----------CCCCceeEEEecccccccCC--hhhhhcC
Q 027913          188 IP-----------VSDASVDAVVGTLVLCSVKD--VDMTLQA  216 (217)
Q Consensus       188 l~-----------~~~~sfD~V~~~~~l~~~~d--~~~~L~e  216 (217)
                      .+           ++..+||+|++..+|||+++  +..+|++
T Consensus       140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~  181 (274)
T 2qe6_A          140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGA  181 (274)
T ss_dssp             HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHH
T ss_pred             chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHH
Confidence            31           33358999999999999997  6777654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=1.2e-14  Score=114.36  Aligned_cols=87  Identities=11%  Similarity=0.143  Sum_probs=71.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC-----CceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-----ASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~-----~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++.. .+|+|+|+|+.|++.+++++.   .  .+++++++|+..+++..     ..||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~-~~v~gvD~s~~~~~~a~~~~~---~--~~~~~~~~d~~~~~~~~~~~~~~~~d~v  128 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFF-PRVIGLDVSKSALEIAAKENT---A--ANISYRLLDGLVPEQAAQIHSEIGDANI  128 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHS-SCEEEEESCHHHHHHHHHHSC---C--TTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhC-CCEEEEECCHHHHHHHHHhCc---c--cCceEEECcccccccccccccccCccEE
Confidence            467899999999999999998643 389999999999999998861   1  48999999999875432     249999


Q ss_pred             EecccccccC--ChhhhhcC
Q 027913          199 VGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       199 ~~~~~l~~~~--d~~~~L~e  216 (217)
                      ++..++||++  ++..+|++
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~  148 (245)
T 3ggd_A          129 YMRTGFHHIPVEKRELLGQS  148 (245)
T ss_dssp             EEESSSTTSCGGGHHHHHHH
T ss_pred             EEcchhhcCCHHHHHHHHHH
Confidence            9999999998  66676654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.46  E-value=6.4e-13  Score=108.78  Aligned_cols=90  Identities=24%  Similarity=0.224  Sum_probs=75.8

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      .+++.+. .++.+|||||||+|.++..+++..  ..+|+|+|+++++++.|++++...++  .+++++.+|+...+.+++
T Consensus        66 ~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~--~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--ENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCeEEEECChhhccccCC
Confidence            3444444 578899999999999999888632  35699999999999999999998887  479999999988655567


Q ss_pred             ceeEEEecccccccC
Q 027913          194 SVDAVVGTLVLCSVK  208 (217)
Q Consensus       194 sfD~V~~~~~l~~~~  208 (217)
                      +||+|++..+++|++
T Consensus       144 ~fD~Iv~~~~~~~~~  158 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP  158 (317)
T ss_dssp             CEEEEEECSBBSCCC
T ss_pred             CeEEEEEcCCHHHHH
Confidence            899999999999987

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.44  E-value=4e-13  Score=110.51  Aligned_cols=88  Identities=18%  Similarity=0.158  Sum_probs=75.6

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      +..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++.+.++. .+++|+.+|+. .+++. .||+|++.++
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~-~~~p~-~~D~v~~~~v  244 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLS-GRAQVVVGSFF-DPLPA-GAGGYVLSAV  244 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTT-SCCCC-SCSEEEEESC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcC-cCeEEecCCCC-CCCCC-CCcEEEEehh
Confidence            467999999999999999886 56779999999 99999999999888875 68999999997 45554 8999999999


Q ss_pred             ccccCCh--hhhhcC
Q 027913          204 LCSVKDV--DMTLQA  216 (217)
Q Consensus       204 l~~~~d~--~~~L~e  216 (217)
                      +|+++++  .++|++
T Consensus       245 lh~~~~~~~~~~l~~  259 (332)
T 3i53_A          245 LHDWDDLSAVAILRR  259 (332)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHH
Confidence            9999986  555543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.44  E-value=4.9e-13  Score=100.59  Aligned_cols=87  Identities=10%  Similarity=0.036  Sum_probs=70.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++. .+++++++|+....    +.+++||+|++
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            67899999999999999888765579999999999999999999888764 57999999987742    23678999999


Q ss_pred             cccccccCChhhh
Q 027913          201 TLVLCSVKDVDMT  213 (217)
Q Consensus       201 ~~~l~~~~d~~~~  213 (217)
                      ...++ ..+....
T Consensus       123 ~~~~~-~~~~~~~  134 (187)
T 2fhp_A          123 DPPYA-KQEIVSQ  134 (187)
T ss_dssp             CCCGG-GCCHHHH
T ss_pred             CCCCC-chhHHHH
Confidence            87754 3333433

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=6.8e-13  Score=102.26  Aligned_cols=90  Identities=21%  Similarity=0.175  Sum_probs=73.8

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||||||+|.++..+++..  ..+|+++|+++.+++.+++++...++  .++.++.+|+......+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY--DNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC--TTEEEEESCGGGCCGGGCC
T ss_pred             HHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEECCcccCCCCCCC
Confidence            334443 478899999999999999988643  37999999999999999999988877  4799999998543223578


Q ss_pred             eeEEEecccccccCC
Q 027913          195 VDAVVGTLVLCSVKD  209 (217)
Q Consensus       195 fD~V~~~~~l~~~~d  209 (217)
                      ||+|++..+++++++
T Consensus       147 fD~v~~~~~~~~~~~  161 (215)
T 2yxe_A          147 YDRIYTTAAGPKIPE  161 (215)
T ss_dssp             EEEEEESSBBSSCCH
T ss_pred             eeEEEECCchHHHHH
Confidence            999999999999864

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.44  E-value=1e-12  Score=109.70  Aligned_cols=96  Identities=18%  Similarity=0.140  Sum_probs=80.4

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...++. ++++|+.+|+. .+++. 
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~-~~v~~~~~d~~-~~~p~-  267 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLA-DRCEILPGDFF-ETIPD-  267 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTT-TCCCS-
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcC-CceEEeccCCC-CCCCC-
Confidence            44555554 4678999999999999999886 56779999999 99999999999888875 68999999998 55665 


Q ss_pred             ceeEEEecccccccCChh--hhhc
Q 027913          194 SVDAVVGTLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~--~~L~  215 (217)
                      .||+|++.+++|++++++  ++|+
T Consensus       268 ~~D~v~~~~vlh~~~d~~~~~~L~  291 (369)
T 3gwz_A          268 GADVYLIKHVLHDWDDDDVVRILR  291 (369)
T ss_dssp             SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             CceEEEhhhhhccCCHHHHHHHHH
Confidence            899999999999999875  4554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.44  E-value=4.8e-13  Score=103.85  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-cc
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP  189 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~  189 (217)
                      .....++...  ++.+|||||||+|..+..+++.  .+.+|+++|+++.+++.|++++...++. .+++++++|+.+ ++
T Consensus        48 ~~l~~l~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~l~  124 (221)
T 3u81_A           48 QIMDAVIREY--SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ-DKVTILNGASQDLIP  124 (221)
T ss_dssp             HHHHHHHHHH--CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHGG
T ss_pred             HHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC-CceEEEECCHHHHHH
Confidence            3333444444  7889999999999999999863  3679999999999999999999988875 579999999865 33


Q ss_pred             -CC----CCceeEEEecccccccCChhhhh
Q 027913          190 -VS----DASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       190 -~~----~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                       +.    .++||+|++....++..+....+
T Consensus       125 ~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~  154 (221)
T 3u81_A          125 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLL  154 (221)
T ss_dssp             GTTTTSCCCCCSEEEECSCGGGHHHHHHHH
T ss_pred             HHHHhcCCCceEEEEEcCCcccchHHHHHH
Confidence             22    26899999988777776544443

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=3.1e-13  Score=101.12  Aligned_cols=79  Identities=19%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||+|||+|.++..+++....+++|+|+++.+++.|++++...++. .+++++.+|+.+ ++..++.||+|++...
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            67899999999999999988765579999999999999999999888764 479999999987 3444567999999866


Q ss_pred             c
Q 027913          204 L  204 (217)
Q Consensus       204 l  204 (217)
                      +
T Consensus       110 ~  110 (177)
T 2esr_A          110 Y  110 (177)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.43  E-value=4e-13  Score=105.19  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~sfD~V~~~  201 (217)
                      ++.+|||||||+|..+..+++. ++.+|+++|+++.+++.|++++...++. .+++++++|+... + ..+++||+|++.
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFE-NQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            7889999999999999999863 4789999999999999999999998875 5899999999764 3 336899999976


Q ss_pred             ccccc
Q 027913          202 LVLCS  206 (217)
Q Consensus       202 ~~l~~  206 (217)
                      .....
T Consensus       150 ~~~~~  154 (232)
T 3ntv_A          150 AAKAQ  154 (232)
T ss_dssp             TTSSS
T ss_pred             CcHHH
Confidence            54433

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.42  E-value=6e-13  Score=111.51  Aligned_cols=78  Identities=21%  Similarity=0.224  Sum_probs=70.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...++   +++++++|+...+.++++||+|+++..+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~---~v~~~~~D~~~~~~~~~~fD~Ii~npp~  308 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL---KAQALHSDVDEALTEEARFDIIVTNPPF  308 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTSCTTCCEEEEEECCCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEcchhhccccCCCeEEEEECCch
Confidence            6789999999999999999865 67999999999999999999988875   4899999999987777899999999999


Q ss_pred             cc
Q 027913          205 CS  206 (217)
Q Consensus       205 ~~  206 (217)
                      |+
T Consensus       309 ~~  310 (381)
T 3dmg_A          309 HV  310 (381)
T ss_dssp             CT
T ss_pred             hh
Confidence            88

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.42  E-value=1.8e-13  Score=108.82  Aligned_cols=92  Identities=13%  Similarity=0.010  Sum_probs=65.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++....   .+..+...+.......+
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~~---v~~~~~~~~~~~~~~~~  108 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADRC---VTIDLLDITAEIPKELA  108 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSSC---CEEEECCTTSCCCGGGT
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcc---ceeeeeecccccccccC
Confidence            4445566555 57889999999999999999854 6799999999999999999864331   12222222220011124


Q ss_pred             CceeEEEecccccccCC
Q 027913          193 ASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d  209 (217)
                      ++||+|++..+++|+..
T Consensus       109 ~~fD~Vv~~~~l~~~~~  125 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTT  125 (261)
T ss_dssp             TCCSEEEEESCGGGSCH
T ss_pred             CCccEEEEhhhhHhCCH
Confidence            78999999999999853

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.42  E-value=1.5e-12  Score=99.67  Aligned_cols=75  Identities=17%  Similarity=0.272  Sum_probs=65.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ++.+|||||||+|.++..++. .++.+++|+|+++.+++.+++++...++  .+++++.+|+..++ +.++||+|++..
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL--ENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--SSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCeEEEecchhhCC-ccCCcCEEEEec
Confidence            478999999999999999886 4578999999999999999999988887  46999999998876 457899999754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.42  E-value=4.8e-13  Score=109.98  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             HHHHHhc---CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          117 QLFDNLR---GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       117 ~i~~~~~---~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .+++.+.   .++.+|||||||+|.++..+++ .++.+++++|++ .+++.+++++...++. .+++++.+|+...++++
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~  231 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVA-SRYHTIAGSAFEVDYGN  231 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCG-GGEEEEESCTTTSCCCS
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCC-cceEEEecccccCCCCC
Confidence            3444443   3678999999999999999886 456799999999 9999999999888774 57999999998877765


Q ss_pred             CceeEEEecccccccCCh--hhhhc
Q 027913          193 ASVDAVVGTLVLCSVKDV--DMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~--~~~L~  215 (217)
                      + ||+|++.+++|++++.  ..+|+
T Consensus       232 ~-~D~v~~~~~l~~~~~~~~~~~l~  255 (335)
T 2r3s_A          232 D-YDLVLLPNFLHHFDVATCEQLLR  255 (335)
T ss_dssp             C-EEEEEEESCGGGSCHHHHHHHHH
T ss_pred             C-CcEEEEcchhccCCHHHHHHHHH
Confidence            4 9999999999999655  45554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.41  E-value=4.2e-13  Score=106.72  Aligned_cols=80  Identities=14%  Similarity=0.241  Sum_probs=69.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~  202 (217)
                      ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++. .+++++++|+..++  +++++||+|+++-
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~-~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLE-DQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCT-TTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCc-ccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            67899999999999999998655559999999999999999999988885 57999999999886  5578999999975


Q ss_pred             ccc
Q 027913          203 VLC  205 (217)
Q Consensus       203 ~l~  205 (217)
                      .+.
T Consensus       128 Py~  130 (259)
T 3lpm_A          128 PYF  130 (259)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            543

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.41  E-value=1.6e-12  Score=101.56  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PV  190 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~  190 (217)
                      .....++...  ++.+|||||||+|..+..+++. ++.+++++|+++.+++.|++++...++. .++.++.+|+... +.
T Consensus        44 ~~l~~~~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           44 ESLLHLLKMA--APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLE-SRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHH--CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCGGGSHHH
T ss_pred             HHHHHHHhcc--CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECCHHHHHHh
Confidence            3333444433  7889999999999999998864 3679999999999999999999988874 5799999999874 43


Q ss_pred             C--CCceeEEEeccccc
Q 027913          191 S--DASVDAVVGTLVLC  205 (217)
Q Consensus       191 ~--~~sfD~V~~~~~l~  205 (217)
                      .  +++||+|++....+
T Consensus       121 ~~~~~~fD~I~~~~~~~  137 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKG  137 (233)
T ss_dssp             HTTSCCEEEEEEEGGGS
T ss_pred             cccCCCccEEEECCCHH
Confidence            2  57899999877654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=1.1e-12  Score=109.28  Aligned_cols=76  Identities=25%  Similarity=0.360  Sum_probs=67.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++++|||||||+|.++..+++....+|++||.|+ |++.|++.++..++. .+++++.+|++++.++ ++||+|++-.+
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~-~~i~~i~~~~~~~~lp-e~~DvivsE~~  158 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLE-DRVHVLPGPVETVELP-EQVDAIVSEWM  158 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCC-ceEEEEeeeeeeecCC-ccccEEEeecc
Confidence            8899999999999998887766667899999995 899999999999986 7899999999999876 68999998543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.41  E-value=7.5e-13  Score=110.48  Aligned_cols=97  Identities=22%  Similarity=0.211  Sum_probs=78.9

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...++. .+++++.+|+.+ +++. 
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~~-  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFK-PLPV-  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCSC-
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCC-cCCC-
Confidence            34455544 4678999999999999999886 45679999999 99999999999888874 589999999875 4443 


Q ss_pred             ceeEEEecccccccCChh--hhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                      .||+|++.+++||+++..  .+|++
T Consensus       248 ~~D~v~~~~vl~~~~~~~~~~~l~~  272 (374)
T 1qzz_A          248 TADVVLLSFVLLNWSDEDALTILRG  272 (374)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCCEEEEeccccCCCHHHHHHHHHH
Confidence            499999999999998874  55543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.41  E-value=6.9e-13  Score=105.04  Aligned_cols=77  Identities=21%  Similarity=0.261  Sum_probs=67.6

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC---CCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~---~~sfD~V~~  200 (217)
                      ++.+|||||||+|..+..++. .++.+|+++|+++.+++.+++++...++  .+++++++|+++++..   +++||+|++
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l--~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL--KGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--SSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CceEEEECcHHHhhcccccCCCceEEEE
Confidence            578999999999999988886 4678999999999999999999999888  4799999999998753   479999998


Q ss_pred             ccc
Q 027913          201 TLV  203 (217)
Q Consensus       201 ~~~  203 (217)
                      ..+
T Consensus       158 ~a~  160 (249)
T 3g89_A          158 RAV  160 (249)
T ss_dssp             ESS
T ss_pred             CCc
Confidence            653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.41  E-value=1.5e-12  Score=112.24  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      .+...+++.+. .++.+|||||||+|.++..+++.+..+|+|+|+|+ |++.|++++...++. .+++++.+|+++++++
T Consensus       145 ~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~-~~v~~~~~d~~~~~~~  222 (480)
T 3b3j_A          145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT-DRIVVIPGKVEEVSLP  222 (480)
T ss_dssp             HHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCT-TTEEEEESCTTTCCCS
T ss_pred             HHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCC-CcEEEEECchhhCccC
Confidence            34445555554 47789999999999999988876667999999998 999999999988885 6899999999998765


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                       ++||+|++..+++++.+
T Consensus       223 -~~fD~Ivs~~~~~~~~~  239 (480)
T 3b3j_A          223 -EQVDIIISEPMGYMLFN  239 (480)
T ss_dssp             -SCEEEEECCCCHHHHTC
T ss_pred             -CCeEEEEEeCchHhcCc
Confidence             58999999888787754

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.41  E-value=7.5e-13  Score=110.07  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=80.4

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++.+.++. .+++++.+|+...++++.
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  257 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVA-DRMRGIAVDIYKESYPEA  257 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCT-TTEEEEECCTTTSCCCCC
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCC-CCEEEEeCccccCCCCCC
Confidence            34555554 5678999999999999999886 45679999999 99999999999888775 569999999998877644


Q ss_pred             ceeEEEecccccccCC--hhhhhcC
Q 027913          194 SVDAVVGTLVLCSVKD--VDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d--~~~~L~e  216 (217)
                        |+|++..++|++++  ...+|++
T Consensus       258 --D~v~~~~vlh~~~d~~~~~~l~~  280 (359)
T 1x19_A          258 --DAVLFCRILYSANEQLSTIMCKK  280 (359)
T ss_dssp             --SEEEEESCGGGSCHHHHHHHHHH
T ss_pred             --CEEEEechhccCCHHHHHHHHHH
Confidence              99999999999987  5555543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.40  E-value=1.5e-12  Score=101.48  Aligned_cols=87  Identities=29%  Similarity=0.259  Sum_probs=71.6

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...+    +++++.+|+......+++||
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~----~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN----NIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS----SEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC----CeEEEECCcccccccCCCcc
Confidence            344443 47789999999999999998864 3799999999999999999885543    78999999987333457899


Q ss_pred             EEEecccccccCC
Q 027913          197 AVVGTLVLCSVKD  209 (217)
Q Consensus       197 ~V~~~~~l~~~~d  209 (217)
                      +|++..+++|+.+
T Consensus       137 ~v~~~~~~~~~~~  149 (231)
T 1vbf_A          137 RVVVWATAPTLLC  149 (231)
T ss_dssp             EEEESSBBSSCCH
T ss_pred             EEEECCcHHHHHH
Confidence            9999999999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.40  E-value=8.5e-13  Score=102.78  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=70.0

Q ss_pred             HHhcCCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeE
Q 027913          120 DNLRGKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDA  197 (217)
Q Consensus       120 ~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~  197 (217)
                      .....++.+|||+||| +|.++..+++..+.+|+|+|+++.+++.|++++...++   +++++++|+..+ ++++++||+
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~~~fD~  126 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS---NVRLVKSNGGIIKGVVEGTFDV  126 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEEECSSCSSTTTCCSCEEE
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC---CcEEEeCCchhhhhcccCceeE
Confidence            3333578999999999 99999998865478999999999999999999988875   789999997544 456789999


Q ss_pred             EEecccccccCC
Q 027913          198 VVGTLVLCSVKD  209 (217)
Q Consensus       198 V~~~~~l~~~~d  209 (217)
                      |+++..+++..+
T Consensus       127 I~~npp~~~~~~  138 (230)
T 3evz_A          127 IFSAPPYYDKPL  138 (230)
T ss_dssp             EEECCCCC----
T ss_pred             EEECCCCcCCcc
Confidence            999877665543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.40  E-value=1.4e-12  Score=102.20  Aligned_cols=89  Identities=16%  Similarity=0.253  Sum_probs=72.7

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC-ce
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA-SV  195 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~-sf  195 (217)
                      +++.+. .++.+|||||||+|.++..+++..+.+|+++|+++.+++.+++++...++  .++.++.+|+ ..+++++ .|
T Consensus        83 ~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~v~~~~~d~-~~~~~~~~~f  159 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV--KNVHVILGDG-SKGFPPKAPY  159 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCG-GGCCGGGCCE
T ss_pred             HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEECCc-ccCCCCCCCc
Confidence            344443 47789999999999999998864337899999999999999999988887  4799999998 4445443 59


Q ss_pred             eEEEecccccccCC
Q 027913          196 DAVVGTLVLCSVKD  209 (217)
Q Consensus       196 D~V~~~~~l~~~~d  209 (217)
                      |+|++..+++++.+
T Consensus       160 D~Ii~~~~~~~~~~  173 (235)
T 1jg1_A          160 DVIIVTAGAPKIPE  173 (235)
T ss_dssp             EEEEECSBBSSCCH
T ss_pred             cEEEECCcHHHHHH
Confidence            99999999998864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.39  E-value=6.7e-13  Score=110.64  Aligned_cols=89  Identities=19%  Similarity=0.131  Sum_probs=76.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~  200 (217)
                      ..+.+|||||||+|.++..+++ .++.+++++|+ +.+++.|++++.+.++. .+++|+.+|+...  |++ ++||+|++
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGS-ERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTG-GGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcc-cceEEEEccccccCCCCC-CCcCEEEE
Confidence            3678999999999999999986 56779999999 99999999998877764 5899999999886  466 78999999


Q ss_pred             cccccccCChh--hhhc
Q 027913          201 TLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       201 ~~~l~~~~d~~--~~L~  215 (217)
                      ..++|++++.+  .+|+
T Consensus       255 ~~vlh~~~~~~~~~~l~  271 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILT  271 (363)
T ss_dssp             ESCSTTSCHHHHHHHHH
T ss_pred             echhhhCCHHHHHHHHH
Confidence            99999998764  4444

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.39  E-value=1.6e-12  Score=97.89  Aligned_cols=81  Identities=19%  Similarity=0.221  Sum_probs=68.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC-CceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~-~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...++. .++.++.+|+.. ++++ ++||+|++..
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~-~~~~~~~~D~v~~~~  108 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPE-ALCKIPDIDIAVVGG  108 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHH-HHTTSCCEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCC-cceEEEecCHHH-hcccCCCCCEEEECC
Confidence            478899999999999999988654 89999999999999999999888764 589999999877 3333 5899999998


Q ss_pred             ccccc
Q 027913          203 VLCSV  207 (217)
Q Consensus       203 ~l~~~  207 (217)
                      +++++
T Consensus       109 ~~~~~  113 (192)
T 1l3i_A          109 SGGEL  113 (192)
T ss_dssp             CTTCH
T ss_pred             chHHH
Confidence            87654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.39  E-value=1.4e-12  Score=102.46  Aligned_cols=80  Identities=20%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHH------cCCCCCCeEEEeccccc-cc--CCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVA------AGLPLTNFKFLQAVGEA-IP--VSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~v~~~~~d~~~-l~--~~~~  193 (217)
                      .++.+|||||||+|.++..+++ .++..++|+|+++.|++.|++++..      .++  .+++++++|+.. ++  ++++
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~--~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF--QNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC--TTEEEEECCTTTCHHHHCCTT
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC--CeEEEEECcHHHhhhhhCCCc
Confidence            3667899999999999999986 4567999999999999999988754      344  589999999987 66  7889


Q ss_pred             ceeEEEeccccc
Q 027913          194 SVDAVVGTLVLC  205 (217)
Q Consensus       194 sfD~V~~~~~l~  205 (217)
                      +||.|++.+.-.
T Consensus       123 ~~D~v~~~~~dp  134 (235)
T 3ckk_A          123 QLTKMFFLFPDP  134 (235)
T ss_dssp             CEEEEEEESCC-
T ss_pred             CeeEEEEeCCCc
Confidence            999998765443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.39  E-value=1.3e-13  Score=106.68  Aligned_cols=90  Identities=20%  Similarity=0.265  Sum_probs=68.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHH----HHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAA----VAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~----~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++ .++.+|+|+|+|+.|++.+.+.+    ...++  .+++++++|++.+|+++++ |.|
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~--~~v~~~~~d~~~l~~~~~~-d~v  102 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL--PNLLYLWATAERLPPLSGV-GEL  102 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC--TTEEEEECCSTTCCSCCCE-EEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC--CceEEEecchhhCCCCCCC-CEE
Confidence            3778999999999999999986 44789999999999988654433    23454  5899999999999987766 777


Q ss_pred             Eecc---cc--cccCChhhhhcC
Q 027913          199 VGTL---VL--CSVKDVDMTLQA  216 (217)
Q Consensus       199 ~~~~---~l--~~~~d~~~~L~e  216 (217)
                      +...   .+  +|++++..+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~l~~  125 (218)
T 3mq2_A          103 HVLMPWGSLLRGVLGSSPEMLRG  125 (218)
T ss_dssp             EEESCCHHHHHHHHTSSSHHHHH
T ss_pred             EEEccchhhhhhhhccHHHHHHH
Confidence            6333   23  377777777654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.39  E-value=3.1e-12  Score=101.18  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=74.2

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ++..+. .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|++++...++. .+++++.+|+.+. +++++
T Consensus        85 i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~  162 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD-DRVTIKLKDIYEG-IEEEN  162 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT-TTEEEECSCGGGC-CCCCS
T ss_pred             HHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC-CceEEEECchhhc-cCCCC
Confidence            444444 57889999999999999998864  4789999999999999999999988874 4599999999865 67788


Q ss_pred             eeEEEecccccccCChhhhhc
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ||+|++     +.+++..+|+
T Consensus       163 ~D~v~~-----~~~~~~~~l~  178 (255)
T 3mb5_A          163 VDHVIL-----DLPQPERVVE  178 (255)
T ss_dssp             EEEEEE-----CSSCGGGGHH
T ss_pred             cCEEEE-----CCCCHHHHHH
Confidence            999997     3456555554

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.38  E-value=2.3e-12  Score=99.12  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=64.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|++++...++. .+++++.+|+... +..++ ||+|++.
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLI-DRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGG-GGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-ceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            77899999999999999998642  679999999999999999999887764 5799999999764 54446 9999976


Q ss_pred             c
Q 027913          202 L  202 (217)
Q Consensus       202 ~  202 (217)
                      .
T Consensus       134 ~  134 (210)
T 3c3p_A          134 C  134 (210)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.38  E-value=1.1e-12  Score=105.33  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=72.4

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEecccccccCCCC
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ++..+. .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.+++++... +.  .+++++++|+.. +++++
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~-~~~~~  178 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI--GNVRTSRSDIAD-FISDQ  178 (275)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC--TTEEEECSCTTT-CCCSC
T ss_pred             HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC--CcEEEEECchhc-cCcCC
Confidence            344444 57789999999999999998864  4689999999999999999999877 75  589999999988 56778


Q ss_pred             ceeEEEecccccccCChhhhhc
Q 027913          194 SVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      +||+|++     +++++..+|+
T Consensus       179 ~fD~Vi~-----~~~~~~~~l~  195 (275)
T 1yb2_A          179 MYDAVIA-----DIPDPWNHVQ  195 (275)
T ss_dssp             CEEEEEE-----CCSCGGGSHH
T ss_pred             CccEEEE-----cCcCHHHHHH
Confidence            9999997     5666666554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.38  E-value=3.3e-12  Score=100.98  Aligned_cols=92  Identities=20%  Similarity=0.177  Sum_probs=75.4

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHc-CCCCCCeEEEecccccccCCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-GLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .++..+. .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.+++++... +.  .+++++.+|+...++++
T Consensus        87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~--~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV--ENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC--CCEEEEESCGGGCCCCT
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC--CCEEEEECchhhcCCCC
Confidence            3444444 57889999999999999998864  3679999999999999999999877 64  68999999999988888


Q ss_pred             CceeEEEecccccccCChhhhhc
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ++||+|++     +.+++..+|+
T Consensus       165 ~~~D~v~~-----~~~~~~~~l~  182 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEPWKVLE  182 (258)
T ss_dssp             TCEEEEEE-----ESSCGGGGHH
T ss_pred             CCcCEEEE-----CCcCHHHHHH
Confidence            89999997     3456655554

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.37  E-value=2.7e-12  Score=102.85  Aligned_cols=93  Identities=20%  Similarity=0.202  Sum_probs=75.0

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHc-C-CCCCCeEEEecccccccCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAA-G-LPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~-~-~~~~~v~~~~~d~~~l~~~  191 (217)
                      .++..+. .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|++++... + +. .+++++.+|+...+++
T Consensus        90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~-~~v~~~~~d~~~~~~~  168 (280)
T 1i9g_A           90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP-DNWRLVVSDLADSELP  168 (280)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC-TTEEEECSCGGGCCCC
T ss_pred             HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCC-CcEEEEECchHhcCCC
Confidence            3444444 57789999999999999998863  4679999999999999999999876 5 22 5899999999998887


Q ss_pred             CCceeEEEecccccccCChhhhhc
Q 027913          192 DASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      +++||+|++     +++++..+|+
T Consensus       169 ~~~~D~v~~-----~~~~~~~~l~  187 (280)
T 1i9g_A          169 DGSVDRAVL-----DMLAPWEVLD  187 (280)
T ss_dssp             TTCEEEEEE-----ESSCGGGGHH
T ss_pred             CCceeEEEE-----CCcCHHHHHH
Confidence            889999997     3455555544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.37  E-value=2.2e-12  Score=100.35  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          112 AGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       112 ~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ......++.... .++.+|||||||+|..+..+++.  ++.+++++|+++++++.|++++...++...+++++++|+.++
T Consensus        42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~  121 (221)
T 3dr5_A           42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV  121 (221)
T ss_dssp             HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred             HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence            344444444432 12349999999999999999873  368999999999999999999999887424899999998775


Q ss_pred             c--CCCCceeEEEeccccc
Q 027913          189 P--VSDASVDAVVGTLVLC  205 (217)
Q Consensus       189 ~--~~~~sfD~V~~~~~l~  205 (217)
                      .  +++++||+|++.....
T Consensus       122 l~~~~~~~fD~V~~d~~~~  140 (221)
T 3dr5_A          122 MSRLANDSYQLVFGQVSPM  140 (221)
T ss_dssp             GGGSCTTCEEEEEECCCTT
T ss_pred             HHHhcCCCcCeEEEcCcHH
Confidence            2  4468999999865443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.37  E-value=1.3e-12  Score=105.44  Aligned_cols=85  Identities=15%  Similarity=0.182  Sum_probs=69.1

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++...++. .+++++++|+..++++  
T Consensus        17 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~D~~~~~~~--   92 (285)
T 1zq9_A           17 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTDLP--   92 (285)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSCCC--
T ss_pred             HHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCC-CceEEEEcceecccch--
Confidence            344555554 47789999999999999999854 568999999999999999998655543 4799999999988765  


Q ss_pred             ceeEEEeccc
Q 027913          194 SVDAVVGTLV  203 (217)
Q Consensus       194 sfD~V~~~~~  203 (217)
                      +||+|+++..
T Consensus        93 ~fD~vv~nlp  102 (285)
T 1zq9_A           93 FFDTCVANLP  102 (285)
T ss_dssp             CCSEEEEECC
T ss_pred             hhcEEEEecC
Confidence            7999999643

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.36  E-value=1.2e-12  Score=108.42  Aligned_cols=97  Identities=14%  Similarity=0.084  Sum_probs=79.8

Q ss_pred             HHHHHhc-CC-CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCC
Q 027913          117 QLFDNLR-GK-AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSD  192 (217)
Q Consensus       117 ~i~~~~~-~~-~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~  192 (217)
                      .+++.+. .+ +.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...++. .+++++.+|+...+ +.+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~  246 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLG-GRVEFFEKNLLDARNFEG  246 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCG-GGEEEEECCTTCGGGGTT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCC-CceEEEeCCcccCcccCC
Confidence            4555554 34 78999999999999999886 56779999999 88999999999888775 57999999998876 234


Q ss_pred             CceeEEEecccccccCCh--hhhhc
Q 027913          193 ASVDAVVGTLVLCSVKDV--DMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~--~~~L~  215 (217)
                      +.||+|++..++||+++.  ..+|+
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~  271 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIG  271 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             CCccEEEEecccccCCHHHHHHHHH
Confidence            669999999999999875  55554

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=6.1e-12  Score=101.11  Aligned_cols=78  Identities=12%  Similarity=0.094  Sum_probs=67.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++. .+++++++|+.+++. +++||+|++...
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~-~~v~~~~~D~~~~~~-~~~fD~Vi~~~p  201 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECCHHHhcc-cCCccEEEECCc
Confidence            368899999999999999998644347999999999999999999988885 469999999999876 689999998544

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.35  E-value=4.8e-12  Score=96.50  Aligned_cols=76  Identities=17%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.+++++.       +++++++|+..++   ++||+|++...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-------~~~~~~~d~~~~~---~~~D~v~~~~p  119 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-------GVNFMVADVSEIS---GKYDTWIMNPP  119 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-------TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-------CCEEEECcHHHCC---CCeeEEEECCC
Confidence            3678999999999999999886644579999999999999998853       6789999999875   68999999999


Q ss_pred             ccccCC
Q 027913          204 LCSVKD  209 (217)
Q Consensus       204 l~~~~d  209 (217)
                      ++++.+
T Consensus       120 ~~~~~~  125 (200)
T 1ne2_A          120 FGSVVK  125 (200)
T ss_dssp             C-----
T ss_pred             chhccC
Confidence            998864

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.35  E-value=2.4e-12  Score=95.98  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||+|||+|.++..+++..  +++|+|+|+.|++.        .   .+++++++|+.. ++++++||+|+++..+
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~--------~---~~~~~~~~d~~~-~~~~~~fD~i~~n~~~   88 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES--------H---RGGNLVRADLLC-SINQESVDVVVFNPPY   88 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT--------C---SSSCEEECSTTT-TBCGGGCSEEEECCCC
T ss_pred             CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc--------c---cCCeEEECChhh-hcccCCCCEEEECCCC
Confidence            77899999999999999998544  99999999999988        1   578999999987 5666899999999998


Q ss_pred             cccCCh
Q 027913          205 CSVKDV  210 (217)
Q Consensus       205 ~~~~d~  210 (217)
                      ++.++.
T Consensus        89 ~~~~~~   94 (170)
T 3q87_B           89 VPDTDD   94 (170)
T ss_dssp             BTTCCC
T ss_pred             ccCCcc
Confidence            876654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.35  E-value=3.3e-13  Score=103.51  Aligned_cols=88  Identities=19%  Similarity=0.178  Sum_probs=53.3

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.+++++...++   +++++++|+.. ++++
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~-~~~~   94 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA---VVDWAAADGIE-WLIE   94 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHH-HHHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC---ceEEEEcchHh-hhhh
Confidence            33444443  47889999999999999998864 466999999999999999999877664   68899999987 5554


Q ss_pred             -----CceeEEEeccccccc
Q 027913          193 -----ASVDAVVGTLVLCSV  207 (217)
Q Consensus       193 -----~sfD~V~~~~~l~~~  207 (217)
                           ++||+|+++..+++.
T Consensus        95 ~~~~~~~fD~i~~npp~~~~  114 (215)
T 4dzr_A           95 RAERGRPWHAIVSNPPYIPT  114 (215)
T ss_dssp             HHHTTCCBSEEEECCCCCC-
T ss_pred             hhhccCcccEEEECCCCCCC
Confidence                 899999997555443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.35  E-value=2.6e-12  Score=103.90  Aligned_cols=87  Identities=20%  Similarity=0.293  Sum_probs=72.3

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++.+|||||||+|.++..+++. +.+|+++|+++.|++.+++++...    .+++++++|+..+++++
T Consensus        38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~----~~v~vi~gD~l~~~~~~  112 (295)
T 3gru_A           38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY----NNIEIIWGDALKVDLNK  112 (295)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC----SSEEEEESCTTTSCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC----CCeEEEECchhhCCccc
Confidence            4444555554 57789999999999999999864 679999999999999999998732    58999999999998888


Q ss_pred             CceeEEEeccccc
Q 027913          193 ASVDAVVGTLVLC  205 (217)
Q Consensus       193 ~sfD~V~~~~~l~  205 (217)
                      .+||+|+++..++
T Consensus       113 ~~fD~Iv~NlPy~  125 (295)
T 3gru_A          113 LDFNKVVANLPYQ  125 (295)
T ss_dssp             SCCSEEEEECCGG
T ss_pred             CCccEEEEeCccc
Confidence            8899999875443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.35  E-value=1.1e-11  Score=99.35  Aligned_cols=87  Identities=21%  Similarity=0.256  Sum_probs=70.8

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+..++.+|||+|||+|.++..+++ .++.+++|+|+|+.+++.+++++...++  .+++++++|+... ++++
T Consensus        99 ~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~v~~~~~d~~~~-~~~~  175 (276)
T 2b3t_A           99 VEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI--KNIHILQSDWFSA-LAGQ  175 (276)
T ss_dssp             HHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--CSEEEECCSTTGG-GTTC
T ss_pred             HHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEEcchhhh-cccC
Confidence            3344444433678999999999999999885 4577999999999999999999988887  4799999999774 4467


Q ss_pred             ceeEEEecccc
Q 027913          194 SVDAVVGTLVL  204 (217)
Q Consensus       194 sfD~V~~~~~l  204 (217)
                      +||+|+++..+
T Consensus       176 ~fD~Iv~npPy  186 (276)
T 2b3t_A          176 QFAMIVSNPPY  186 (276)
T ss_dssp             CEEEEEECCCC
T ss_pred             CccEEEECCCC
Confidence            89999998433

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.35  E-value=4.1e-12  Score=100.44  Aligned_cols=78  Identities=19%  Similarity=0.222  Sum_probs=66.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccCC--CCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPVS--DASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~~--~~sfD~V~  199 (217)
                      ++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|++++...++. .+++++++|+.+ ++..  .++||+|+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVD-QRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            78899999999999999998642  679999999999999999999998885 589999999977 3422  34899999


Q ss_pred             eccc
Q 027913          200 GTLV  203 (217)
Q Consensus       200 ~~~~  203 (217)
                      +...
T Consensus       142 ~d~~  145 (248)
T 3tfw_A          142 IDAD  145 (248)
T ss_dssp             ECSC
T ss_pred             ECCc
Confidence            8654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.35  E-value=2.5e-12  Score=100.92  Aligned_cols=84  Identities=14%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             HHHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          119 FDNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      +..+..++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...++. .++++..+|+.....++..||+
T Consensus        15 i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~I~v~~gD~l~~~~~~~~~D~   93 (244)
T 3gnl_A           15 VASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT-EQIDVRKGNGLAVIEKKDAIDT   93 (244)
T ss_dssp             HHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCGGGCCCE
T ss_pred             HHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEecchhhccCccccccE
Confidence            3333357789999999999999999864 3568999999999999999999999985 5799999998877544446999


Q ss_pred             EEeccc
Q 027913          198 VVGTLV  203 (217)
Q Consensus       198 V~~~~~  203 (217)
                      |++..+
T Consensus        94 Iviagm   99 (244)
T 3gnl_A           94 IVIAGM   99 (244)
T ss_dssp             EEEEEE
T ss_pred             EEEeCC
Confidence            986543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.35  E-value=2.8e-12  Score=99.90  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=69.4

Q ss_pred             HHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          120 DNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      ..+..++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...++. .++++..+|+.....+++.||+|
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~-~~I~~~~gD~l~~~~~~~~~D~I   94 (230)
T 3lec_A           16 ANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT-SKIDVRLANGLSAFEEADNIDTI   94 (230)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCGGGCCCEE
T ss_pred             HHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECchhhccccccccCEE
Confidence            333347789999999999999999864 3568999999999999999999999986 67999999998876554579998


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      +...+
T Consensus        95 viaGm   99 (230)
T 3lec_A           95 TICGM   99 (230)
T ss_dssp             EEEEE
T ss_pred             EEeCC
Confidence            86554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.35  E-value=2.6e-12  Score=106.72  Aligned_cols=96  Identities=19%  Similarity=0.188  Sum_probs=77.9

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++++...++. .+++++.+|+.+ +++. 
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~~-  248 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFE-PLPR-  248 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCSS-
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCC-CceEEEeCCCCC-CCCC-
Confidence            34455554 4678999999999999998886 45679999999 99999999999888874 589999999875 3443 


Q ss_pred             ceeEEEecccccccCChh--hhhc
Q 027913          194 SVDAVVGTLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~--~~L~  215 (217)
                      .||+|++..++|++++.+  .+|+
T Consensus       249 ~~D~v~~~~vl~~~~~~~~~~~l~  272 (360)
T 1tw3_A          249 KADAIILSFVLLNWPDHDAVRILT  272 (360)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHH
T ss_pred             CccEEEEcccccCCCHHHHHHHHH
Confidence            499999999999998764  4554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.34  E-value=5.7e-12  Score=97.93  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=71.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC------CCeEEEecCCHHHHHHHHHHHHHcCC---CCCCeEEEeccccccc----C
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIP----V  190 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~l~----~  190 (217)
                      .++.+|||||||+|.++..+++..      ..+|+++|+++.+++.|++++...++   ...+++++.+|+....    .
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            477899999999999999888643      35999999999999999999988762   0158999999998764    4


Q ss_pred             CCCceeEEEecccccccC
Q 027913          191 SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~  208 (217)
                      ..++||+|++...++++.
T Consensus       159 ~~~~fD~I~~~~~~~~~~  176 (227)
T 2pbf_A          159 ELGLFDAIHVGASASELP  176 (227)
T ss_dssp             HHCCEEEEEECSBBSSCC
T ss_pred             cCCCcCEEEECCchHHHH
Confidence            567899999999998874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.34  E-value=7e-12  Score=99.14  Aligned_cols=82  Identities=12%  Similarity=0.160  Sum_probs=66.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCC---CCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVS---DASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~---~~sfD~  197 (217)
                      ++.+|||+|||+|.++..+++. ++.+++|+|+++.|++.|++++...++. .+++++++|+...   +++   +++||+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCC-ccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            5779999999999998888753 4679999999999999999999988874 4699999998762   344   268999


Q ss_pred             EEeccccccc
Q 027913          198 VVGTLVLCSV  207 (217)
Q Consensus       198 V~~~~~l~~~  207 (217)
                      |+++-.+++.
T Consensus       144 i~~npp~~~~  153 (254)
T 2h00_A          144 CMCNPPFFAN  153 (254)
T ss_dssp             EEECCCCC--
T ss_pred             EEECCCCccC
Confidence            9998665544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.33  E-value=5.5e-13  Score=104.05  Aligned_cols=77  Identities=22%  Similarity=0.396  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCC-HHHHHHH---HHHHHHcCCCCCCeEEEecccccccCC-CCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPN-RKMEKYA---QTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~  197 (217)
                      .++.+|||||||+|.++..+++ .++.+|+|+|+| +.|++.|   ++++...++  .++.|+++|++.+|.. .+.+|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~--~~v~~~~~d~~~l~~~~~d~v~~  100 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL--SNVVFVIAAAESLPFELKNIADS  100 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC--SSEEEECCBTTBCCGGGTTCEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC--CCeEEEEcCHHHhhhhccCeEEE
Confidence            4788999999999999999885 567899999999 7777776   777767776  5899999999998632 245666


Q ss_pred             EEecc
Q 027913          198 VVGTL  202 (217)
Q Consensus       198 V~~~~  202 (217)
                      |++++
T Consensus       101 i~~~~  105 (225)
T 3p2e_A          101 ISILF  105 (225)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            66544

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.33  E-value=8.5e-12  Score=101.31  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=66.5

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ...+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++...++  .+++++.+|+..++++  
T Consensus        31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~--~~v~~~~~D~~~~~~~--  105 (299)
T 2h1r_A           31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY--NNLEVYEGDAIKTVFP--  105 (299)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEC----CCSSCCC--
T ss_pred             HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEECchhhCCcc--
Confidence            334444444 47789999999999999999854 67999999999999999999887776  5899999999988764  


Q ss_pred             ceeEEEeccccc
Q 027913          194 SVDAVVGTLVLC  205 (217)
Q Consensus       194 sfD~V~~~~~l~  205 (217)
                      +||+|+++...+
T Consensus       106 ~~D~Vv~n~py~  117 (299)
T 2h1r_A          106 KFDVCTANIPYK  117 (299)
T ss_dssp             CCSEEEEECCGG
T ss_pred             cCCEEEEcCCcc
Confidence            799999865443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=6.5e-12  Score=105.09  Aligned_cols=89  Identities=13%  Similarity=0.126  Sum_probs=71.8

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCC-CCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLP-LTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||+|||+|.++..+++ .++.+|+|+|+|+.+++.+++++...++. ..+++|+.+|+.. ++++++
T Consensus       214 ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~  292 (375)
T 4dcm_A          214 FMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFR  292 (375)
T ss_dssp             HHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTC
T ss_pred             HHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCC
Confidence            445554 3568999999999999999986 44789999999999999999999887753 1258899999987 467789


Q ss_pred             eeEEEeccccccc
Q 027913          195 VDAVVGTLVLCSV  207 (217)
Q Consensus       195 fD~V~~~~~l~~~  207 (217)
                      ||+|+++..+|+.
T Consensus       293 fD~Ii~nppfh~~  305 (375)
T 4dcm_A          293 FNAVLCNPPFHQQ  305 (375)
T ss_dssp             EEEEEECCCC---
T ss_pred             eeEEEECCCcccC
Confidence            9999999888864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.33  E-value=2e-12  Score=100.92  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----ccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.+++++...    .++.++.+|+..    +++. ++||+|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~~-~~~D~v  147 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIV-EKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC----CCeEEEECCCCCcccccccC-ccEEEE
Confidence            46789999999999999999864 3478999999999999999886443    489999999988    6666 789999


Q ss_pred             EecccccccCCh
Q 027913          199 VGTLVLCSVKDV  210 (217)
Q Consensus       199 ~~~~~l~~~~d~  210 (217)
                      +     ++++++
T Consensus       148 ~-----~~~~~~  154 (230)
T 1fbn_A          148 Y-----EDVAQP  154 (230)
T ss_dssp             E-----ECCCST
T ss_pred             E-----EecCCh
Confidence            8     455565

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.33  E-value=2.5e-12  Score=95.25  Aligned_cols=77  Identities=12%  Similarity=0.112  Sum_probs=64.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CC--CCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS--DASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~--~~sfD~V~~  200 (217)
                      ++.+|||+|||+|.++..+++. +..++|+|+++.+++.+++++...++   +++++++|+.+. + ++  .++||+|++
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~D~i~~  116 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL---GARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC---CCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC---ceEEEeccHHHHHHhhhccCCceEEEEE
Confidence            6789999999999999998864 44599999999999999999988775   789999998874 2 21  348999999


Q ss_pred             ccccc
Q 027913          201 TLVLC  205 (217)
Q Consensus       201 ~~~l~  205 (217)
                      ...++
T Consensus       117 ~~~~~  121 (171)
T 1ws6_A          117 APPYA  121 (171)
T ss_dssp             CCCTT
T ss_pred             CCCCc
Confidence            87765

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.32  E-value=1.6e-12  Score=106.88  Aligned_cols=95  Identities=11%  Similarity=0.064  Sum_probs=77.1

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .+ .+|||||||+|.++..+++ .++.+++++|+ +.+++.+++++...++. .+++++.+|+.. +++ +
T Consensus       158 ~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~~~-~  232 (334)
T 2ip2_A          158 HEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAG-ERVSLVGGDMLQ-EVP-S  232 (334)
T ss_dssp             HHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHT-TSEEEEESCTTT-CCC-S
T ss_pred             HHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCC-CcEEEecCCCCC-CCC-C
Confidence            34455444 34 8999999999999999886 45679999999 99999999998776654 589999999977 555 6


Q ss_pred             ceeEEEecccccccCChh--hhhc
Q 027913          194 SVDAVVGTLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~--~~L~  215 (217)
                      +||+|++..++|++++..  .+|+
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~  256 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLG  256 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHH
T ss_pred             CCCEEEEchhccCCCHHHHHHHHH
Confidence            799999999999998765  5554

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.32  E-value=7.1e-12  Score=97.18  Aligned_cols=88  Identities=19%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P  189 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~  189 (217)
                      .+...++...  ++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++. .+++++++|+... +
T Consensus        54 ~~l~~l~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~  130 (225)
T 3tr6_A           54 QLLALLVKLM--QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS-DKIGLRLSPAKDTLA  130 (225)
T ss_dssp             HHHHHHHHHH--TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHH
T ss_pred             HHHHHHHHhh--CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CceEEEeCCHHHHHH
Confidence            3444444444  78899999999999999998642  679999999999999999999998885 5699999998654 2


Q ss_pred             -CCC----CceeEEEeccc
Q 027913          190 -VSD----ASVDAVVGTLV  203 (217)
Q Consensus       190 -~~~----~sfD~V~~~~~  203 (217)
                       +..    ++||+|++...
T Consensus       131 ~~~~~~~~~~fD~v~~~~~  149 (225)
T 3tr6_A          131 ELIHAGQAWQYDLIYIDAD  149 (225)
T ss_dssp             HHHTTTCTTCEEEEEECSC
T ss_pred             HhhhccCCCCccEEEECCC
Confidence             221    78999996554

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.32  E-value=4.1e-12  Score=102.26  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecC-CHHHHHHHHHHH-----HHcCCC---CCCeEEEeccccc----cc-
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDP-NRKMEKYAQTAA-----VAAGLP---LTNFKFLQAVGEA----IP-  189 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~-s~~~l~~a~~~~-----~~~~~~---~~~v~~~~~d~~~----l~-  189 (217)
                      .++.+|||||||+|.++..+++....+|+|+|+ ++.+++.+++++     ...++.   ..++.+...|..+    +. 
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            377899999999999998888654458999999 899999999998     444431   0267888666443    21 


Q ss_pred             -CCCCceeEEEecccccccCChhhhhc
Q 027913          190 -VSDASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       190 -~~~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                       +++++||+|++..+++|.++...+|+
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~  184 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQAHDALLR  184 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGGHHHHHH
T ss_pred             hccCCCCCEEEEeCcccChHHHHHHHH
Confidence             14578999999999999888777664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.32  E-value=2.7e-12  Score=108.78  Aligned_cols=101  Identities=15%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHH-------HHHHHHcCCCCCCeEEEecc
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYA-------QTAAVAAGLPLTNFKFLQAV  184 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~v~~~~~d  184 (217)
                      ....+++.+. .++.+|||||||+|.++..+++. +..+|+|+|+++.+++.|       ++++...|+...+++++++|
T Consensus       230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            4455566555 57889999999999999999863 445899999999999988       88888877422589999976


Q ss_pred             cccc--cC--CCCceeEEEecccccccCChhhhhc
Q 027913          185 GEAI--PV--SDASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       185 ~~~l--~~--~~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ....  ++  ..++||+|+++.++ +.+++..+|+
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~  343 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVE  343 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHH
T ss_pred             ccccccccccccCCCCEEEEeCcc-ccccHHHHHH
Confidence            4421  22  24689999987666 3456655544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.32  E-value=3.6e-12  Score=100.24  Aligned_cols=83  Identities=10%  Similarity=0.067  Sum_probs=72.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..++.. +..+|+++|+++.|++.+++++...|+   +..+.+.|...-+ +.+.||+|++.-
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~---~~~~~v~D~~~~~-p~~~~DvaL~lk  206 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV---PHRTNVADLLEDR-LDEPADVTLLLK  206 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC---CEEEEECCTTTSC-CCSCCSEEEETT
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeeecccC-CCCCcchHHHHH
Confidence            46889999999999999988864 677999999999999999999998886   5789999987665 457899999999


Q ss_pred             cccccCCh
Q 027913          203 VLCSVKDV  210 (217)
Q Consensus       203 ~l~~~~d~  210 (217)
                      +++++++-
T Consensus       207 ti~~Le~q  214 (281)
T 3lcv_B          207 TLPCLETQ  214 (281)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHhhhh
Confidence            99999754

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.32  E-value=3.9e-12  Score=99.09  Aligned_cols=81  Identities=19%  Similarity=0.179  Sum_probs=71.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||.|.++..++  +...|+|+|+++.|++.+++.+...+.   +..+.+.|....+.+ ++||+|++.-+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~---~~~~~v~D~~~~~~~-~~~DvvLllk~  177 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW---DFTFALQDVLCAPPA-EAGDLALIFKL  177 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC---EEEEEECCTTTSCCC-CBCSEEEEESC
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeecccCCCC-CCcchHHHHHH
Confidence            478899999999999998876  778999999999999999999888774   789999999888765 58999999999


Q ss_pred             ccccCCh
Q 027913          204 LCSVKDV  210 (217)
Q Consensus       204 l~~~~d~  210 (217)
                      +|++.+-
T Consensus       178 lh~LE~q  184 (253)
T 3frh_A          178 LPLLERE  184 (253)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhhh
Confidence            9998653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.31  E-value=1.1e-11  Score=97.45  Aligned_cols=92  Identities=24%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      .++..+. .++.+|||+|||+|.++..+++. +.+++++|+++.+++.|+++....++. .+++++.+|+....++++.|
T Consensus        82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~  159 (248)
T 2yvl_A           82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLG-KNVKFFNVDFKDAEVPEGIF  159 (248)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCC-TTEEEECSCTTTSCCCTTCB
T ss_pred             HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-CcEEEEEcChhhcccCCCcc
Confidence            3444444 47889999999999999998866 789999999999999999999888774 58999999998864366789


Q ss_pred             eEEEecccccccCChhhhhc
Q 027913          196 DAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~  215 (217)
                      |+|++.     .+++..+|+
T Consensus       160 D~v~~~-----~~~~~~~l~  174 (248)
T 2yvl_A          160 HAAFVD-----VREPWHYLE  174 (248)
T ss_dssp             SEEEEC-----SSCGGGGHH
T ss_pred             cEEEEC-----CcCHHHHHH
Confidence            999973     445545443

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.31  E-value=4.2e-12  Score=98.82  Aligned_cols=82  Identities=10%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-------CeEEEecCCHHHHHHHHHHHHHcC-----CCCCCeEEEecccccccCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-------VQVLGVDPNRKMEKYAQTAAVAAG-----LPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~gvD~s~~~l~~a~~~~~~~~-----~~~~~v~~~~~d~~~l~~~  191 (217)
                      .++.+|||||||+|.++..+++..+       .+|+++|+++.+++.+++++...+     .  .+++++.+|+.. +++
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~--~~v~~~~~d~~~-~~~  159 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS--GQLLIVEGDGRK-GYP  159 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH--TSEEEEESCGGG-CCG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCC--CceEEEECCccc-CCC
Confidence            4678999999999999998886333       489999999999999999987654     3  589999999987 444


Q ss_pred             C-CceeEEEecccccccC
Q 027913          192 D-ASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~-~sfD~V~~~~~l~~~~  208 (217)
                      + ++||+|++...++++.
T Consensus       160 ~~~~fD~I~~~~~~~~~~  177 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPDTP  177 (227)
T ss_dssp             GGCSEEEEEECSCBSSCC
T ss_pred             cCCCccEEEECCchHHHH
Confidence            4 7899999999999875

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.31  E-value=1.3e-11  Score=95.73  Aligned_cols=85  Identities=16%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCC---CCCCeEEEecccccccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGL---PLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|..+..+++.  +..+|+++|+++.+++.+++++...++   ...++.++++|+...+..+++||+|
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            47789999999999999988863  336899999999999999999877553   0158999999998766556789999


Q ss_pred             EecccccccC
Q 027913          199 VGTLVLCSVK  208 (217)
Q Consensus       199 ~~~~~l~~~~  208 (217)
                      ++...++++.
T Consensus       156 ~~~~~~~~~~  165 (226)
T 1i1n_A          156 HVGAAAPVVP  165 (226)
T ss_dssp             EECSBBSSCC
T ss_pred             EECCchHHHH
Confidence            9999888775

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.31  E-value=6.8e-12  Score=97.22  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=66.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CC---CCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VS---DASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~---~~sfD~  197 (217)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|++++...++. .+++++++|+... + +.   .++||+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLN-DRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            78899999999999999998643  679999999999999999999988885 5699999998654 2 21   267999


Q ss_pred             EEeccccc
Q 027913          198 VVGTLVLC  205 (217)
Q Consensus       198 V~~~~~l~  205 (217)
                      |++.....
T Consensus       137 v~~d~~~~  144 (223)
T 3duw_A          137 IFIDADKQ  144 (223)
T ss_dssp             EEECSCGG
T ss_pred             EEEcCCcH
Confidence            99876544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.31  E-value=7.4e-12  Score=96.57  Aligned_cols=74  Identities=15%  Similarity=0.099  Sum_probs=59.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.+.+.++..    .++.++++|+...    ++. ++||+|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~-~~fD~V  130 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIV-EKVDLI  130 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTC-CCEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC----CCeEEEEcCCCCchhhcccc-cceeEE
Confidence            47789999999999999888763 2468999999999988777766543    4789999998774    444 789999


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      ++..
T Consensus       131 ~~~~  134 (210)
T 1nt2_A          131 YQDI  134 (210)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9873

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.30  E-value=2.3e-11  Score=93.05  Aligned_cols=79  Identities=18%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||+|||+|.++..+++....+++|+|+++.+++.+++++...++   +++++++|+..++   ++||+|++...
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~---~~~D~v~~~~p  121 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEFN---SRVDIVIMNPP  121 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGCC---CCCSEEEECCC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC---CEEEEECchHHcC---CCCCEEEEcCC
Confidence            36789999999999999999866445899999999999999999877664   7899999999874   48999999887


Q ss_pred             ccccC
Q 027913          204 LCSVK  208 (217)
Q Consensus       204 l~~~~  208 (217)
                      ++...
T Consensus       122 ~~~~~  126 (207)
T 1wy7_A          122 FGSQR  126 (207)
T ss_dssp             CSSSS
T ss_pred             Ccccc
Confidence            77664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.29  E-value=2e-11  Score=95.75  Aligned_cols=82  Identities=20%  Similarity=0.147  Sum_probs=67.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c------------
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P------------  189 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~------------  189 (217)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|++++...++. .+++++.+|+... +            
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~  138 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE-NKIFLKLGSALETLQVLIDSKSAPSWA  138 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHHHHHHHhhccccccc
Confidence            78899999999999999998643  679999999999999999999888874 4699999998653 2            


Q ss_pred             --CCC--CceeEEEeccccccc
Q 027913          190 --VSD--ASVDAVVGTLVLCSV  207 (217)
Q Consensus       190 --~~~--~sfD~V~~~~~l~~~  207 (217)
                        +++  ++||+|++.....++
T Consensus       139 ~~f~~~~~~fD~I~~~~~~~~~  160 (239)
T 2hnk_A          139 SDFAFGPSSIDLFFLDADKENY  160 (239)
T ss_dssp             TTTCCSTTCEEEEEECSCGGGH
T ss_pred             ccccCCCCCcCEEEEeCCHHHH
Confidence              222  789999988665443

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.29  E-value=5.8e-12  Score=97.01  Aligned_cols=71  Identities=20%  Similarity=0.143  Sum_probs=60.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..++    .+++|+|+++.                 ++.++++|+..+++++++||+|++..+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~  124 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVFCLS  124 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEEESC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEEehh
Confidence            367899999999999988773    68999999987                 346899999999988899999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      +|+ .++..+|++
T Consensus       125 l~~-~~~~~~l~~  136 (215)
T 2zfu_A          125 LMG-TNIRDFLEE  136 (215)
T ss_dssp             CCS-SCHHHHHHH
T ss_pred             ccc-cCHHHHHHH
Confidence            975 888877764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.29  E-value=1.7e-11  Score=98.25  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ++..+. .++.+|||+|||+|.++..+++.  ++.+++++|+++.+++.|++++...++. .+++++.+|+... +++++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~  181 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG-FDEKD  181 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC-CSCCS
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-CCEEEEECCHHHc-ccCCc
Confidence            444444 57889999999999999988864  3679999999999999999999888764 5799999999887 66778


Q ss_pred             eeEEEecccccccCChhhhhc
Q 027913          195 VDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~~~L~  215 (217)
                      ||+|++.     .+++..+|+
T Consensus       182 ~D~V~~~-----~~~~~~~l~  197 (277)
T 1o54_A          182 VDALFLD-----VPDPWNYID  197 (277)
T ss_dssp             EEEEEEC-----CSCGGGTHH
T ss_pred             cCEEEEC-----CcCHHHHHH
Confidence            9999973     455555543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.29  E-value=2.8e-11  Score=103.12  Aligned_cols=85  Identities=22%  Similarity=0.248  Sum_probs=70.5

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----c
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----I  188 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l  188 (217)
                      +...+++.+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++  .+++|+++|+..    +
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~--~~v~f~~~d~~~~l~~~  350 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL--QNVTFYHENLEEDVTKQ  350 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCTTSCCSSS
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEECCHHHHhhhh
Confidence            3344444443 46789999999999999999855 77999999999999999999988887  489999999987    3


Q ss_pred             cCCCCceeEEEec
Q 027913          189 PVSDASVDAVVGT  201 (217)
Q Consensus       189 ~~~~~sfD~V~~~  201 (217)
                      ++.+++||+|++.
T Consensus       351 ~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          351 PWAKNGFDKVLLD  363 (433)
T ss_dssp             GGGTTCCSEEEEC
T ss_pred             hhhcCCCCEEEEC
Confidence            4566789999974

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.29  E-value=1.3e-11  Score=103.13  Aligned_cols=81  Identities=26%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..++.... .+++|+|+++.|++.|++++...++. .+++++++|+..+++++++||+|+++.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~-~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL-DKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG-GGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC-CceEEEECChhhCCcccCCcCEEEECC
Confidence            3778999999999999999886432 38999999999999999999998875 589999999999998888999999965


Q ss_pred             ccc
Q 027913          203 VLC  205 (217)
Q Consensus       203 ~l~  205 (217)
                      .+.
T Consensus       295 Pyg  297 (373)
T 3tm4_A          295 PYG  297 (373)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.28  E-value=1.5e-11  Score=97.03  Aligned_cols=76  Identities=17%  Similarity=0.321  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHc--------CCCCCCeEEEeccccc-cc--CCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAA--------GLPLTNFKFLQAVGEA-IP--VSD  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~v~~~~~d~~~-l~--~~~  192 (217)
                      ++.+|||||||+|.++..+++ .+...++|+|+|+.+++.+++++...        ++  .+++++++|+.. ++  ++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF--QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT--TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC--CcEEEEeccHHHHHHHhccc
Confidence            677999999999999999886 44568999999999999999988765        65  589999999987 66  778


Q ss_pred             CceeEEEecc
Q 027913          193 ASVDAVVGTL  202 (217)
Q Consensus       193 ~sfD~V~~~~  202 (217)
                      +++|.|+..+
T Consensus       127 ~~~d~v~~~~  136 (246)
T 2vdv_E          127 GQLSKMFFCF  136 (246)
T ss_dssp             TCEEEEEEES
T ss_pred             cccCEEEEEC
Confidence            8999998543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.28  E-value=1.1e-11  Score=96.21  Aligned_cols=82  Identities=12%  Similarity=0.028  Sum_probs=66.6

Q ss_pred             HHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc-cccCCCCceeE
Q 027913          120 DNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE-AIPVSDASVDA  197 (217)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~-~l~~~~~sfD~  197 (217)
                      ..+..++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...++. .++++..+|.. .++. ...||+
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~-~~i~~~~~d~l~~l~~-~~~~D~   87 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK-EKIQVRLANGLAAFEE-TDQVSV   87 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT-TTEEEEECSGGGGCCG-GGCCCE
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEECchhhhccc-CcCCCE
Confidence            333347789999999999999999864 4568999999999999999999999985 57999999985 4432 226999


Q ss_pred             EEeccc
Q 027913          198 VVGTLV  203 (217)
Q Consensus       198 V~~~~~  203 (217)
                      |+...+
T Consensus        88 IviaG~   93 (225)
T 3kr9_A           88 ITIAGM   93 (225)
T ss_dssp             EEEEEE
T ss_pred             EEEcCC
Confidence            987554

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.28  E-value=8.2e-12  Score=97.52  Aligned_cols=87  Identities=11%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++  .+..+|+|+|+++.|++.+++++.+.    .|+..+.+|....   ++..+++|+|
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~----~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR----RNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC----TTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh----cCeeEEEEeccCccccccccceEEEE
Confidence            6899999999999999999987  56779999999999999999887544    4889999887653   4667899999


Q ss_pred             EecccccccCChhhhhcC
Q 027913          199 VGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       199 ~~~~~l~~~~d~~~~L~e  216 (217)
                      ++.  +.+..+++.++++
T Consensus       152 f~d--~~~~~~~~~~l~~  167 (233)
T 4df3_A          152 YAD--VAQPEQAAIVVRN  167 (233)
T ss_dssp             EEC--CCCTTHHHHHHHH
T ss_pred             EEe--ccCChhHHHHHHH
Confidence            864  3444455555543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.27  E-value=5.6e-12  Score=100.35  Aligned_cols=80  Identities=18%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH---cCCCCCCeEEEecccccc-------cCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA---AGLPLTNFKFLQAVGEAI-------PVSD  192 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~v~~~~~d~~~l-------~~~~  192 (217)
                      .++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.|++++..   .++. .+++++++|+..+       ++++
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFS-ARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTG-GGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCc-ceEEEEeCCHHHHhhhhhhhccCC
Confidence            36779999999999999988864 467999999999999999999877   6664 4799999999887       2567


Q ss_pred             CceeEEEecccc
Q 027913          193 ASVDAVVGTLVL  204 (217)
Q Consensus       193 ~sfD~V~~~~~l  204 (217)
                      ++||+|+++-.+
T Consensus       114 ~~fD~Vv~nPPy  125 (260)
T 2ozv_A          114 EHFHHVIMNPPY  125 (260)
T ss_dssp             TCEEEEEECCCC
T ss_pred             CCcCEEEECCCC
Confidence            899999998433

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.27  E-value=1.4e-11  Score=98.77  Aligned_cols=78  Identities=17%  Similarity=0.102  Sum_probs=68.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..+++. ...+|+|+|+++.+++.|+++++..++  .++.++++|+..++. .++||+|++..
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l--~~~~~~~~d~~~~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL--NNVIPILADNRDVEL-KDVADRVIMGY  194 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC--SSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCEEEEECChHHcCc-cCCceEEEECC
Confidence            37789999999999999999864 456999999999999999999999887  589999999998844 57899999876


Q ss_pred             cc
Q 027913          203 VL  204 (217)
Q Consensus       203 ~l  204 (217)
                      ..
T Consensus       195 p~  196 (272)
T 3a27_A          195 VH  196 (272)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.27  E-value=2.6e-11  Score=94.80  Aligned_cols=78  Identities=22%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----ccCCC--Ccee
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSD--ASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l~~~~--~sfD  196 (217)
                      ++.+|||||||+|..+..+++..  +.+++++|+++.+++.|++++...++. .+++++++|+.+    ++..+  ++||
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA-EKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            77899999999999999998643  569999999999999999999888874 579999999754    23333  7899


Q ss_pred             EEEeccc
Q 027913          197 AVVGTLV  203 (217)
Q Consensus       197 ~V~~~~~  203 (217)
                      +|++...
T Consensus       151 ~V~~d~~  157 (232)
T 3cbg_A          151 LIFIDAD  157 (232)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9997655

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.27  E-value=5.3e-12  Score=101.14  Aligned_cols=86  Identities=14%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcCCc----chHhhhhC-C----CCeEEEecCCHHHHHHHHHHHHH-----------------------cC
Q 027913          125 KAKKVLEIGIGTGP----NLKYYAAD-T----DVQVLGVDPNRKMEKYAQTAAVA-----------------------AG  172 (217)
Q Consensus       125 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~  172 (217)
                      ++.+|||+|||+|.    ++..+++. +    +.+|+|+|+|+.|++.|++....                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999997    44444432 2    36899999999999999986410                       00


Q ss_pred             -CC-----CCCeEEEecccccccCC-CCceeEEEecccccccCCh
Q 027913          173 -LP-----LTNFKFLQAVGEAIPVS-DASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       173 -~~-----~~~v~~~~~d~~~l~~~-~~sfD~V~~~~~l~~~~d~  210 (217)
                       +.     ..++.|.++|+...|++ .+.||+|+|.++++|+++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~  229 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  229 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHH
Confidence             00     02689999999887665 5789999999999999765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.26  E-value=2e-11  Score=98.47  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=64.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce---eEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV---DAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf---D~V~~~  201 (217)
                      ++.+|||+|||+|.++..+++.++.+|+|+|+|+.+++.|++++...++. .+++|+++|+... ++ ++|   |+|+++
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~v~~~~~D~~~~-~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-DRFFVRKGEFLEP-FK-EKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-TSEEEEESSTTGG-GG-GGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEEECcchhh-cc-cccCCCCEEEEc
Confidence            66799999999999999988656779999999999999999999988874 4699999999873 33 578   999997

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.26  E-value=4.8e-12  Score=104.69  Aligned_cols=85  Identities=15%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+++.+. .++.+|||||||+|.++..+++ .+..+++++|+|+.|++.+++++...++   +++++.+|+...+  +++
T Consensus       187 ~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~---~~~~~~~d~~~~~--~~~  261 (343)
T 2pjd_A          187 LLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV---EGEVFASNVFSEV--KGR  261 (343)
T ss_dssp             HHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTC--CSC
T ss_pred             HHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---CCEEEEccccccc--cCC
Confidence            3444442 3567999999999999999886 3456899999999999999999988775   4678899987653  678


Q ss_pred             eeEEEecccccc
Q 027913          195 VDAVVGTLVLCS  206 (217)
Q Consensus       195 fD~V~~~~~l~~  206 (217)
                      ||+|+++..+|+
T Consensus       262 fD~Iv~~~~~~~  273 (343)
T 2pjd_A          262 FDMIISNPPFHD  273 (343)
T ss_dssp             EEEEEECCCCCS
T ss_pred             eeEEEECCCccc
Confidence            999999999885

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.26  E-value=3.2e-11  Score=95.67  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++.+|||||||+|.++..+++. +.+|+++|+++.|++.+++++..  .  .+++++++|+..+++++
T Consensus        17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~--~--~~v~~i~~D~~~~~~~~   91 (255)
T 3tqs_A           17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ--Q--KNITIYQNDALQFDFSS   91 (255)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT--C--TTEEEEESCTTTCCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh--C--CCcEEEEcchHhCCHHH
Confidence            3444556555 57789999999999999999854 57999999999999999998854  2  58999999999987643


Q ss_pred             ----CceeEEEec
Q 027913          193 ----ASVDAVVGT  201 (217)
Q Consensus       193 ----~sfD~V~~~  201 (217)
                          +.|| |+++
T Consensus        92 ~~~~~~~~-vv~N  103 (255)
T 3tqs_A           92 VKTDKPLR-VVGN  103 (255)
T ss_dssp             SCCSSCEE-EEEE
T ss_pred             hccCCCeE-EEec
Confidence                5688 4443

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.25  E-value=1.2e-11  Score=98.61  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhc--CCCCeEEEECCcC--CcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913          113 GYKSQLFDNLR--GKAKKVLEIGIGT--GPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (217)
Q Consensus       113 ~~~~~i~~~~~--~~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  186 (217)
                      .+..+.+..+.  .....|||||||+  +.++..+++  .++.+|+++|.|+.|+..|++++...+.  .+++|+++|+.
T Consensus        64 ~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~--~~~~~v~aD~~  141 (277)
T 3giw_A           64 DWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE--GRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS--SEEEEEECCTT
T ss_pred             HHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC--CcEEEEEeccc
Confidence            33444444443  2346899999997  445555543  5778999999999999999998854332  47999999998


Q ss_pred             ccc--C--C--CCcee-----EEEecccccccCCh---hhhhc
Q 027913          187 AIP--V--S--DASVD-----AVVGTLVLCSVKDV---DMTLQ  215 (217)
Q Consensus       187 ~l~--~--~--~~sfD-----~V~~~~~l~~~~d~---~~~L~  215 (217)
                      +++  +  +  .+.||     .|+++.+|||+++.   ..+|+
T Consensus       142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~  184 (277)
T 3giw_A          142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVR  184 (277)
T ss_dssp             CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHH
T ss_pred             ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHH
Confidence            863  1  1  34566     68899999999984   44554

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.25  E-value=1.2e-11  Score=103.31  Aligned_cols=89  Identities=16%  Similarity=0.173  Sum_probs=72.2

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  .++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++.        .+++++.+|+.. +++.
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~~~  267 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL--------SGIEHVGGDMFA-SVPQ  267 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc--------CCCEEEeCCccc-CCCC
Confidence            44555543  3568999999999999999986 45678999999 9999877642        479999999987 6664


Q ss_pred             CceeEEEecccccccCChh--hhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                        ||+|++..++||+++++  .+|++
T Consensus       268 --~D~v~~~~~lh~~~d~~~~~~l~~  291 (372)
T 1fp1_D          268 --GDAMILKAVCHNWSDEKCIEFLSN  291 (372)
T ss_dssp             --EEEEEEESSGGGSCHHHHHHHHHH
T ss_pred             --CCEEEEecccccCCHHHHHHHHHH
Confidence              99999999999999887  66654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.24  E-value=1.7e-11  Score=97.30  Aligned_cols=80  Identities=25%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             cCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          123 RGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       123 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ..++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++  . +++..+|+... +++++||+|+++.
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~--~-v~~~~~d~~~~-~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--R-PRFLEGSLEAA-LPFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--C-CEEEESCHHHH-GGGCCEEEEEEEC
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC--c-EEEEECChhhc-CcCCCCCEEEECC
Confidence            347889999999999999888764 44999999999999999999988876  3 89999998773 4567899999987


Q ss_pred             ccccc
Q 027913          203 VLCSV  207 (217)
Q Consensus       203 ~l~~~  207 (217)
                      ..+++
T Consensus       193 ~~~~~  197 (254)
T 2nxc_A          193 YAELH  197 (254)
T ss_dssp             CHHHH
T ss_pred             cHHHH
Confidence            65553

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.24  E-value=3.1e-12  Score=100.79  Aligned_cols=88  Identities=23%  Similarity=0.119  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-  189 (217)
                      .....++...  ++.+|||||||+|..+..+++.  .+.+|+++|+++++++.|++++...++. .+++++++|+.... 
T Consensus        50 ~~l~~l~~~~--~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~  126 (242)
T 3r3h_A           50 QFMQMLIRLT--RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQE-HKIKLRLGPALDTLH  126 (242)
T ss_dssp             HHHHHHHHHH--TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCT-TTEEEEESCHHHHHH
T ss_pred             HHHHHHHhhc--CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHH
Confidence            3334444444  7889999999999999999873  3679999999999999999999998885 68999999997652 


Q ss_pred             CC-----CCceeEEEeccc
Q 027913          190 VS-----DASVDAVVGTLV  203 (217)
Q Consensus       190 ~~-----~~sfD~V~~~~~  203 (217)
                      ..     +++||+|++...
T Consensus       127 ~~~~~~~~~~fD~V~~d~~  145 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD  145 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC
T ss_pred             HHhhccCCCCEeEEEEcCC
Confidence            11     478999998654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.24  E-value=2.1e-11  Score=95.22  Aligned_cols=76  Identities=18%  Similarity=0.138  Sum_probs=63.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc---ccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~---l~~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+++.|++.+.++++..    .+++++++|+..   +++.+++||+|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~----~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR----TNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC----TTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc----CCeEEEEcccCChhhhcccCCcEEEE
Confidence            46789999999999999999864  4579999999999988888877664    479999999987   45567899999


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      ++...
T Consensus       152 ~~~~~  156 (233)
T 2ipx_A          152 FADVA  156 (233)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            98554

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.23  E-value=8.2e-11  Score=94.27  Aligned_cols=77  Identities=10%  Similarity=0.097  Sum_probs=68.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++++..++. ++++++.+|+..++ ..+.||.|++..
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~-~~v~~~~~D~~~~~-~~~~~D~Vi~~~  200 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFP-GENIADRILMGY  200 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEeCcHHHhc-cccCCCEEEECC
Confidence            478999999999999999988766678999999999999999999999986 68999999999886 357899999764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.23  E-value=2e-11  Score=96.44  Aligned_cols=78  Identities=23%  Similarity=0.274  Sum_probs=66.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C-----CCCce
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-----SDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~-----~~~sf  195 (217)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|++++...++. .+++++.+|+.+. + +     ++++|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            7789999999999999998863 3 679999999999999999999988874 5899999998764 3 2     25789


Q ss_pred             eEEEeccc
Q 027913          196 DAVVGTLV  203 (217)
Q Consensus       196 D~V~~~~~  203 (217)
                      |+|++...
T Consensus       158 D~V~~d~~  165 (247)
T 1sui_A          158 DFIFVDAD  165 (247)
T ss_dssp             SEEEECSC
T ss_pred             EEEEEcCc
Confidence            99998654

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.23  E-value=5.2e-11  Score=92.50  Aligned_cols=78  Identities=17%  Similarity=0.106  Sum_probs=65.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCC----Ccee
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD----ASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~----~sfD  196 (217)
                      ++.+|||||||+|..+..+++. + +.+++++|+++.+++.|++++...++. .+++++.+|+.+. + +..    ++||
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            7889999999999999999864 2 679999999999999999999988875 6899999998654 1 221    6899


Q ss_pred             EEEeccc
Q 027913          197 AVVGTLV  203 (217)
Q Consensus       197 ~V~~~~~  203 (217)
                      +|++...
T Consensus       148 ~v~~d~~  154 (229)
T 2avd_A          148 VAVVDAD  154 (229)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9998654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.22  E-value=1.1e-11  Score=102.69  Aligned_cols=81  Identities=17%  Similarity=0.262  Sum_probs=68.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..+++ .++.+++++|+ +.+++.+++.        .+++++.+|+.. ++++  ||+|++.+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p~--~D~v~~~~  254 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS--------NNLTYVGGDMFT-SIPN--ADAVLLKY  254 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB--------TTEEEEECCTTT-CCCC--CSEEEEES
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC--------CCcEEEeccccC-CCCC--ccEEEeeh
Confidence            4678999999999999999986 45779999999 9999887752        469999999966 5553  99999999


Q ss_pred             cccccCChh--hhhcC
Q 027913          203 VLCSVKDVD--MTLQA  216 (217)
Q Consensus       203 ~l~~~~d~~--~~L~e  216 (217)
                      ++||+++++  .+|++
T Consensus       255 ~lh~~~d~~~~~~l~~  270 (352)
T 1fp2_A          255 ILHNWTDKDCLRILKK  270 (352)
T ss_dssp             CGGGSCHHHHHHHHHH
T ss_pred             hhccCCHHHHHHHHHH
Confidence            999999877  66654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.22  E-value=2.2e-11  Score=100.36  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcC----------CCCCCeEEEecccccc--c
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAG----------LPLTNFKFLQAVGEAI--P  189 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~----------~~~~~v~~~~~d~~~l--~  189 (217)
                      .++.+|||+|||+|.++..+++.  +..+|+++|+++.+++.|++++...+          +. .+++++.+|+...  +
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~-~~v~~~~~d~~~~~~~  182 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP-DNVDFIHKDISGATED  182 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC-CCEEEEESCTTCCC--
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC-CceEEEECChHHcccc
Confidence            47889999999999999998863  34799999999999999999987632          11 5899999999887  4


Q ss_pred             CCCCceeEEEecc
Q 027913          190 VSDASVDAVVGTL  202 (217)
Q Consensus       190 ~~~~sfD~V~~~~  202 (217)
                      +++++||+|++..
T Consensus       183 ~~~~~fD~V~~~~  195 (336)
T 2b25_A          183 IKSLTFDAVALDM  195 (336)
T ss_dssp             -----EEEEEECS
T ss_pred             cCCCCeeEEEECC
Confidence            6677899999854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.22  E-value=8.4e-12  Score=103.35  Aligned_cols=94  Identities=17%  Similarity=0.058  Sum_probs=70.0

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. .++.+|||||||+|.++..+++ .++.+++++|+ +.++.  +++....++. .+++++.+|+. .+++  
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~-~~v~~~~~d~~-~~~p--  246 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVA-GRWKVVEGDFL-REVP--  246 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGT-TSEEEEECCTT-TCCC--
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCC-CCeEEEecCCC-CCCC--
Confidence            34555554 5678999999999999999886 46678999999 45544  3332223333 57999999996 3444  


Q ss_pred             ceeEEEecccccccCCh--hhhhcC
Q 027913          194 SVDAVVGTLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~--~~~L~e  216 (217)
                      +||+|++..++||++++  ..+|++
T Consensus       247 ~~D~v~~~~vlh~~~d~~~~~~L~~  271 (348)
T 3lst_A          247 HADVHVLKRILHNWGDEDSVRILTN  271 (348)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCcEEEEehhccCCCHHHHHHHHHH
Confidence            89999999999999987  466654

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.22  E-value=5.9e-11  Score=98.47  Aligned_cols=79  Identities=25%  Similarity=0.232  Sum_probs=69.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-C-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-D-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||+|||+|.++..++. . +..+++|+|+++.|++.|++++...++  .+++|+++|+.+++.+.+.||+|+++
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~--~~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL--SWIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC--TTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC--CceEEEeCChhhCccccCCCCEEEEC
Confidence            4678999999999999998886 2 557999999999999999999999988  38999999999998777789999996


Q ss_pred             ccc
Q 027913          202 LVL  204 (217)
Q Consensus       202 ~~l  204 (217)
                      -.+
T Consensus       280 pPy  282 (354)
T 3tma_A          280 PPH  282 (354)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.20  E-value=6.4e-12  Score=93.13  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------CCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------VSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~~~~  193 (217)
                      .++.+|||+|||+|.++..+++.  ++.+++|+|+++ +++.            .+++++++|+...+        ++++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCCCC
Confidence            47789999999999999998864  457999999999 6532            47899999998876        7778


Q ss_pred             ceeEEEecccccccCCh
Q 027913          194 SVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~  210 (217)
                      +||+|++...+++..+.
T Consensus        88 ~~D~i~~~~~~~~~~~~  104 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTP  104 (180)
T ss_dssp             CEEEEEECCCCCCCSCH
T ss_pred             ceeEEEECCCccccCCC
Confidence            99999999998887765

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.20  E-value=4.9e-12  Score=99.93  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=67.8

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhC---CCCeEEEecCCHHHHHHHHHHHHHc---CCCCCC------------
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---TDVQVLGVDPNRKMEKYAQTAAVAA---GLPLTN------------  177 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~------------  177 (217)
                      .+++.+. .++.+|||+|||+|.++..+++.   ++.+++|+|+|+.+++.|++++...   ++. .+            
T Consensus        42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~  120 (250)
T 1o9g_A           42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLT-ARELERREQSERFG  120 (250)
T ss_dssp             HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHH-HHHHHHHHHHHHHC
T ss_pred             HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhcccc-ccchhhhhhhhhcc
Confidence            3444443 25679999999999999888754   3568999999999999999887654   331 11            


Q ss_pred             -------------eE-------------EEecccccccC-----CCCceeEEEecccccccCC
Q 027913          178 -------------FK-------------FLQAVGEAIPV-----SDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       178 -------------v~-------------~~~~d~~~l~~-----~~~sfD~V~~~~~l~~~~d  209 (217)
                                   ++             |+++|+.....     ...+||+|+++..+.+..+
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~  183 (250)
T 1o9g_A          121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTH  183 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSS
T ss_pred             cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecccc
Confidence                         56             99999877431     3458999999877666544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.19  E-value=1.1e-10  Score=95.46  Aligned_cols=75  Identities=13%  Similarity=0.159  Sum_probs=66.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.+++++...++  .+++++++|+..++..+++||+|++
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~--~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--LNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--CSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC--CeEEEEECChhhcccccccCCEEEE
Confidence            47789999999999999998863  347899999999999999999998887  4899999999988755678999997

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.18  E-value=3.7e-11  Score=96.07  Aligned_cols=83  Identities=12%  Similarity=0.178  Sum_probs=66.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++ +|||||||+|.++..+++. +.+|+++|+++.|++.+++++..     .+++++++|+..+++++
T Consensus        35 i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~-----~~v~vi~~D~l~~~~~~  107 (271)
T 3fut_A           35 HLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG-----LPVRLVFQDALLYPWEE  107 (271)
T ss_dssp             HHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT-----SSEEEEESCGGGSCGGG
T ss_pred             HHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC-----CCEEEEECChhhCChhh
Confidence            3444566655 466 9999999999999999865 57899999999999999998742     48999999999988764


Q ss_pred             C-ceeEEEeccc
Q 027913          193 A-SVDAVVGTLV  203 (217)
Q Consensus       193 ~-sfD~V~~~~~  203 (217)
                      . .+|.|+++.-
T Consensus       108 ~~~~~~iv~NlP  119 (271)
T 3fut_A          108 VPQGSLLVANLP  119 (271)
T ss_dssp             SCTTEEEEEEEC
T ss_pred             ccCccEEEecCc
Confidence            3 6888887653

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.18  E-value=3e-11  Score=100.82  Aligned_cols=88  Identities=15%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  .+..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++.        .+++|+.+|+.+ ++++
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~d~~~-~~p~  261 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF--------SGVEHLGGDMFD-GVPK  261 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc--------CCCEEEecCCCC-CCCC
Confidence            34444443  3568999999999999999986 56779999999 8888877642        589999999987 6765


Q ss_pred             CceeEEEecccccccCChh--hhhc
Q 027913          193 ASVDAVVGTLVLCSVKDVD--MTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~--~~L~  215 (217)
                      +  |+|++.+++|++++.+  ++|+
T Consensus       262 ~--D~v~~~~vlh~~~~~~~~~~l~  284 (368)
T 3reo_A          262 G--DAIFIKWICHDWSDEHCLKLLK  284 (368)
T ss_dssp             C--SEEEEESCGGGBCHHHHHHHHH
T ss_pred             C--CEEEEechhhcCCHHHHHHHHH
Confidence            4  9999999999998764  4454

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.17  E-value=5.9e-11  Score=96.57  Aligned_cols=84  Identities=20%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccccC--CCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPV--SDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~~--~~~sfD~V  198 (217)
                      .++.+|||||||+|..+..+++. +..+++++|+++.+++.+++++..  .+....+++++.+|+..++.  ++++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            46789999999999999999875 356999999999999999998742  11222589999999988753  46899999


Q ss_pred             Eeccccccc
Q 027913          199 VGTLVLCSV  207 (217)
Q Consensus       199 ~~~~~l~~~  207 (217)
                      ++....++.
T Consensus       174 i~d~~~~~~  182 (304)
T 3bwc_A          174 IIDTTDPAG  182 (304)
T ss_dssp             EEECC----
T ss_pred             EECCCCccc
Confidence            997655443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.16  E-value=1e-10  Score=96.27  Aligned_cols=76  Identities=22%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC----CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~----~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...++...+++++++|+.++..    .+++||+|++
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            6789999999999999999864 4499999999999999999998888742259999999987632    1568999998


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       232 d  232 (332)
T 2igt_A          232 D  232 (332)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.16  E-value=5e-11  Score=99.36  Aligned_cols=89  Identities=15%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  .+..+|||||||+|.++..+++ .++.+++++|+ +.+++.+++.        .+++|+.+|+.. |++.
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~p~  259 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF--------PGVTHVGGDMFK-EVPS  259 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC--------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc--------CCeEEEeCCcCC-CCCC
Confidence            34555543  3568999999999999999986 56779999999 8888877642        589999999987 7775


Q ss_pred             CceeEEEecccccccCChh--hhhcC
Q 027913          193 ASVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                      +  |+|++.+++|++++.+  ++|++
T Consensus       260 ~--D~v~~~~vlh~~~d~~~~~~L~~  283 (364)
T 3p9c_A          260 G--DTILMKWILHDWSDQHCATLLKN  283 (364)
T ss_dssp             C--SEEEEESCGGGSCHHHHHHHHHH
T ss_pred             C--CEEEehHHhccCCHHHHHHHHHH
Confidence            4  9999999999997653  44543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.14  E-value=1.4e-11  Score=102.81  Aligned_cols=87  Identities=21%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             HHHHhcCCCCeEEEECCc------CCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          118 LFDNLRGKAKKVLEIGIG------TGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG------~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ++..+..++.+|||||||      +|..+..+++  .++.+|+|+|+|+.|.        . ..  .+++|+++|+.+++
T Consensus       209 lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~~--~rI~fv~GDa~dlp  277 (419)
T 3sso_A          209 HFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-DE--LRIRTIQGDQNDAE  277 (419)
T ss_dssp             HHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-CB--TTEEEEECCTTCHH
T ss_pred             HHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-cC--CCcEEEEecccccc
Confidence            455555578899999999      6666666664  2678999999999983        1 11  58999999999988


Q ss_pred             CC------CCceeEEEecccccccCChhhhhcC
Q 027913          190 VS------DASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       190 ~~------~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +.      +++||+|++.. .|++.+...+|++
T Consensus       278 f~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~e  309 (419)
T 3sso_A          278 FLDRIARRYGPFDIVIDDG-SHINAHVRTSFAA  309 (419)
T ss_dssp             HHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHH
T ss_pred             hhhhhhcccCCccEEEECC-cccchhHHHHHHH
Confidence            76      68999999864 5777777777654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.14  E-value=1.3e-10  Score=91.06  Aligned_cols=78  Identities=23%  Similarity=0.251  Sum_probs=66.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-C-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C-----CCCce
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-T-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V-----SDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~-----~~~sf  195 (217)
                      ++++|||||||+|..+..+++. + +.+++++|+++.+++.|++++...++. .+++++.+|+.+. + +     ++++|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVE-HKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            7789999999999999999863 3 679999999999999999999988874 5799999998764 2 2     25789


Q ss_pred             eEEEeccc
Q 027913          196 DAVVGTLV  203 (217)
Q Consensus       196 D~V~~~~~  203 (217)
                      |+|++...
T Consensus       149 D~I~~d~~  156 (237)
T 3c3y_A          149 DFGFVDAD  156 (237)
T ss_dssp             EEEEECSC
T ss_pred             CEEEECCc
Confidence            99997643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.14  E-value=8.6e-11  Score=98.23  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-ccC-CCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IPV-SDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~~-~~~sfD~V~~~  201 (217)
                      ++.+|||+| |+|.++..++.. +..+|+|+|+++.|++.|++++...++  .+++++++|+.. +|. .+++||+|++.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~--~~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY--EDIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC--CCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEEChhhhhchhhccCCccEEEEC
Confidence            578999999 999999988864 347999999999999999999998887  489999999988 663 35689999997


Q ss_pred             cccc
Q 027913          202 LVLC  205 (217)
Q Consensus       202 ~~l~  205 (217)
                      ..++
T Consensus       249 ~p~~  252 (373)
T 2qm3_A          249 PPET  252 (373)
T ss_dssp             CCSS
T ss_pred             CCCc
Confidence            6544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.14  E-value=2.6e-11  Score=95.21  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=62.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCC-CCce
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVS-DASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~-~~sf  195 (217)
                      ++.+|||||||+|..+..+++.     ++.+|+|+|+++.|++.|+.    ..   .+++++++|+...   +.. +.+|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~---~~v~~~~gD~~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM---ENITLHQGDCSDLTTFEHLREMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC---TTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC---CceEEEECcchhHHHHHhhccCCC
Confidence            6789999999999999998864     46799999999999988872    12   5899999999884   543 3479


Q ss_pred             eEEEecccccccCChhhhhc
Q 027913          196 DAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~  215 (217)
                      |+|++...  | .+...+|+
T Consensus       154 D~I~~d~~--~-~~~~~~l~  170 (236)
T 2bm8_A          154 PLIFIDNA--H-ANTFNIMK  170 (236)
T ss_dssp             SEEEEESS--C-SSHHHHHH
T ss_pred             CEEEECCc--h-HhHHHHHH
Confidence            99997654  2 25555544

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.13  E-value=1.8e-10  Score=90.86  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++++..  .  .+++++.+|+..+++++
T Consensus        18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~--~--~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD--H--DNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT--C--CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc--C--CCeEEEEChHHhCCccc
Confidence            3344555554 46789999999999999999854 47899999999999999988743  2  48999999999998764


Q ss_pred             -CceeEEEec
Q 027913          193 -ASVDAVVGT  201 (217)
Q Consensus       193 -~sfD~V~~~  201 (217)
                       ..|+ |+++
T Consensus        93 ~~~~~-vv~n  101 (244)
T 1qam_A           93 NQSYK-IFGN  101 (244)
T ss_dssp             SCCCE-EEEE
T ss_pred             CCCeE-EEEe
Confidence             4553 4443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.13  E-value=4.6e-10  Score=87.66  Aligned_cols=77  Identities=18%  Similarity=0.159  Sum_probs=61.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++  .+..+|+|+|+++.|++...+...+.    .|+.++++|+....   ...++||+|
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r----~nv~~i~~Da~~~~~~~~~~~~~D~I  150 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR----PNIFPLLADARFPQSYKSVVENVDVL  150 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC----TTEEEEECCTTCGGGTTTTCCCEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----CCeEEEEcccccchhhhccccceEEE
Confidence            5789999999999999988886  34569999999999986665555443    48999999997643   124689999


Q ss_pred             Eecccc
Q 027913          199 VGTLVL  204 (217)
Q Consensus       199 ~~~~~l  204 (217)
                      ++...+
T Consensus       151 ~~d~a~  156 (232)
T 3id6_C          151 YVDIAQ  156 (232)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            988665

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.12  E-value=7.4e-11  Score=95.69  Aligned_cols=81  Identities=14%  Similarity=0.263  Sum_probs=66.4

Q ss_pred             HHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CC---
Q 027913          119 FDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VS---  191 (217)
Q Consensus       119 ~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~---  191 (217)
                      ++.+. .++.+|||+|||+|.++..+++. ++.+|+|+|+++.|++.|++++...+   .++.++++|+..++  +.   
T Consensus        19 l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g---~~v~~v~~d~~~l~~~l~~~g   95 (301)
T 1m6y_A           19 IEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTLG   95 (301)
T ss_dssp             HHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHTT
T ss_pred             HHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCHHHHHHHHHhcC
Confidence            34443 47789999999999999999874 36799999999999999999987766   48999999998875  22   


Q ss_pred             CCceeEEEecc
Q 027913          192 DASVDAVVGTL  202 (217)
Q Consensus       192 ~~sfD~V~~~~  202 (217)
                      .++||.|++..
T Consensus        96 ~~~~D~Vl~D~  106 (301)
T 1m6y_A           96 IEKVDGILMDL  106 (301)
T ss_dssp             CSCEEEEEEEC
T ss_pred             CCCCCEEEEcC
Confidence            15899999744

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=2.6e-10  Score=92.84  Aligned_cols=76  Identities=12%  Similarity=0.172  Sum_probs=63.1

Q ss_pred             CCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEEEecc
Q 027913          126 AKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAVVGTL  202 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V~~~~  202 (217)
                      +.+|||||||+|.+++++++ .++.++++||+++.+++.|++++....  ..+++++.+|+..+  .+++++||+|++..
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~--~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR--APRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC--TTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC--CCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            34999999999999999997 577899999999999999999874322  25899999999876  24568999999854


Q ss_pred             c
Q 027913          203 V  203 (217)
Q Consensus       203 ~  203 (217)
                      .
T Consensus       168 ~  168 (317)
T 3gjy_A          168 F  168 (317)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.11  E-value=8.9e-11  Score=92.83  Aligned_cols=88  Identities=15%  Similarity=0.208  Sum_probs=65.0

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      +...+++.+. .++.+|||||||+|.++..+++.+..+++|+|+++.|++.++++   ..   .+++++++|+..+++++
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~~---~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---GD---ERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---CC---TTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---cC---CCeEEEEcchhhCChhH
Confidence            3444555554 46789999999999999999866457999999999999999876   12   58999999999988664


Q ss_pred             CceeEEEeccccccc
Q 027913          193 ASVDAVVGTLVLCSV  207 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~  207 (217)
                      ..-+.++..+..+++
T Consensus        93 ~~~~~~vv~NlPy~i  107 (249)
T 3ftd_A           93 LGKELKVVGNLPYNV  107 (249)
T ss_dssp             SCSSEEEEEECCTTT
T ss_pred             ccCCcEEEEECchhc
Confidence            211334444444444

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.11  E-value=7.1e-11  Score=98.10  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=67.2

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      +..+|||||||+|.++..+++ .+..+++++|+ +.+++.+++      .  .+++++.+|+.. +++  .||+|++.++
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~v~~~~~d~~~-~~~--~~D~v~~~~v  260 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N--ENLNFVGGDMFK-SIP--SADAVLLKWV  260 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C--SSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C--CCcEEEeCccCC-CCC--CceEEEEccc
Confidence            668999999999999999986 45678999999 788877764      1  469999999987 665  4999999999


Q ss_pred             ccccCChh--hhhcC
Q 027913          204 LCSVKDVD--MTLQA  216 (217)
Q Consensus       204 l~~~~d~~--~~L~e  216 (217)
                      ||+++|++  .+|++
T Consensus       261 lh~~~d~~~~~~l~~  275 (358)
T 1zg3_A          261 LHDWNDEQSLKILKN  275 (358)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHH
Confidence            99999877  66654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.11  E-value=5.2e-10  Score=89.72  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+++|||||||+|..+..+++. +..+++++|+++.+++.|++++...  ++..++++++.+|+... +..+++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            36789999999999999999876 3579999999999999999987542  33336899999998763 44457899999


Q ss_pred             ecccc
Q 027913          200 GTLVL  204 (217)
Q Consensus       200 ~~~~l  204 (217)
                      +....
T Consensus       154 ~d~~~  158 (275)
T 1iy9_A          154 VDSTE  158 (275)
T ss_dssp             ESCSS
T ss_pred             ECCCC
Confidence            85443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.11  E-value=2.1e-11  Score=91.06  Aligned_cols=72  Identities=13%  Similarity=0.003  Sum_probs=62.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC---CCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV---SDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~---~~~sfD~V~~  200 (217)
                      .++.+|||||||.               +++|+|+.|++.|+++..      .+++++++|++.+++   ++++||+|++
T Consensus        11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~------~~~~~~~~d~~~~~~~~~~~~~fD~V~~   69 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG------NEGRVSVENIKQLLQSAHKESSFDIILS   69 (176)
T ss_dssp             CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT------TTSEEEEEEGGGGGGGCCCSSCEEEEEE
T ss_pred             CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc------cCcEEEEechhcCccccCCCCCEeEEEE
Confidence            4788999999986               239999999999998752      257999999999987   7899999999


Q ss_pred             ccccccc-CChhhhhcC
Q 027913          201 TLVLCSV-KDVDMTLQA  216 (217)
Q Consensus       201 ~~~l~~~-~d~~~~L~e  216 (217)
                      .+++||+ +++..+|+|
T Consensus        70 ~~~l~~~~~~~~~~l~~   86 (176)
T 2ld4_A           70 GLVPGSTTLHSAEILAE   86 (176)
T ss_dssp             CCSTTCCCCCCHHHHHH
T ss_pred             CChhhhcccCHHHHHHH
Confidence            9999999 898888875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.11  E-value=3.2e-10  Score=91.88  Aligned_cols=79  Identities=18%  Similarity=0.146  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+.+|||||||+|..+..+++. +..+++++|+++.+++.+++++..  .++..++++++.+|+... +..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            36689999999999999999875 457999999999999999998754  233226899999998763 44457899999


Q ss_pred             ecc
Q 027913          200 GTL  202 (217)
Q Consensus       200 ~~~  202 (217)
                      +..
T Consensus       169 ~d~  171 (296)
T 1inl_A          169 IDS  171 (296)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            743

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.11  E-value=2.9e-10  Score=92.91  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH--cC-CCCCCeEEEecccccc-cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AG-LPLTNFKFLQAVGEAI-PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~-~~~~~v~~~~~d~~~l-~~~~~sfD~V  198 (217)
                      ..+++|||||||+|..+..+++. +..+++++|+++.+++.|++++..  .+ +...+++++.+|+... +..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            36789999999999999999875 357999999999999999998764  22 2125899999999874 4456789999


Q ss_pred             Eecccccc
Q 027913          199 VGTLVLCS  206 (217)
Q Consensus       199 ~~~~~l~~  206 (217)
                      ++....+.
T Consensus       156 i~d~~~~~  163 (314)
T 1uir_A          156 IIDLTDPV  163 (314)
T ss_dssp             EEECCCCB
T ss_pred             EECCCCcc
Confidence            99765543

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.11  E-value=2.8e-10  Score=92.50  Aligned_cols=80  Identities=15%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccc-ccCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEA-IPVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~-l~~~~~sfD~V~  199 (217)
                      ..+++|||||||+|..+..+++. +..+++++|+++.+++.|++++..  .++...+++++.+|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            46789999999999999999875 357999999999999999998765  23322689999999876 344567899999


Q ss_pred             eccc
Q 027913          200 GTLV  203 (217)
Q Consensus       200 ~~~~  203 (217)
                      +...
T Consensus       174 ~d~~  177 (304)
T 2o07_A          174 TDSS  177 (304)
T ss_dssp             EECC
T ss_pred             ECCC
Confidence            8544

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.10  E-value=3.5e-10  Score=93.06  Aligned_cols=80  Identities=23%  Similarity=0.198  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-c-CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-P-VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~-~~~~sfD~V  198 (217)
                      ..+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...  ++...+++++++|+... + +++++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            367899999999999999998753 579999999999999999987652  33225899999998775 2 446789999


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      ++...
T Consensus       199 i~d~~  203 (334)
T 1xj5_A          199 IVDSS  203 (334)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.10  E-value=6.3e-11  Score=95.41  Aligned_cols=84  Identities=11%  Similarity=0.017  Sum_probs=60.1

Q ss_pred             HHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEE-Eeccccccc---CC
Q 027913          118 LFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF-LQAVGEAIP---VS  191 (217)
Q Consensus       118 i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~-~~~d~~~l~---~~  191 (217)
                      +++.+.  .++.+|||||||||.++..+++....+|+|+|++++|++.+.++.       .++.. ...++..++   ++
T Consensus        76 ~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-------~rv~~~~~~ni~~l~~~~l~  148 (291)
T 3hp7_A           76 ALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-------DRVRSMEQYNFRYAEPVDFT  148 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-------TTEEEECSCCGGGCCGGGCT
T ss_pred             HHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cccceecccCceecchhhCC
Confidence            344443  367899999999999999888765569999999999998854421       23333 234554443   34


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                      ..+||+|++..+|+++.
T Consensus       149 ~~~fD~v~~d~sf~sl~  165 (291)
T 3hp7_A          149 EGLPSFASIDVSFISLN  165 (291)
T ss_dssp             TCCCSEEEECCSSSCGG
T ss_pred             CCCCCEEEEEeeHhhHH
Confidence            45699999999888763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.09  E-value=2.1e-10  Score=103.01  Aligned_cols=78  Identities=19%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~~  202 (217)
                      ++++|||+|||+|.++..++.....+|+++|+|+.+++.+++++...++...+++++++|+.++ +...++||+|++.-
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            7889999999999999998865556799999999999999999999988434899999999874 44567899999843

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.08  E-value=4e-10  Score=87.45  Aligned_cols=76  Identities=13%  Similarity=0.141  Sum_probs=61.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V  198 (217)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+++.|++.+++++...    .+++++++|+....   ...++||+|
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc----CCCEEEEccCCCcchhhcccCCceEE
Confidence            46789999999999999999864  3479999999999999999887543    48999999998742   123689999


Q ss_pred             Eeccc
Q 027913          199 VGTLV  203 (217)
Q Consensus       199 ~~~~~  203 (217)
                      ++...
T Consensus       148 ~~~~~  152 (227)
T 1g8a_A          148 FEDVA  152 (227)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            97654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.08  E-value=3.4e-11  Score=95.75  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCH-------HHHHHHHHHHHHcCCCCCCeEEEecccccc-c-CCC--C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR-------KMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-VSD--A  193 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~~~--~  193 (217)
                      ++.+|||+|||+|..+..+++. +.+|+|+|+++       .+++.|++++...++. .+++++++|+..+ + +++  +
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-ARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-TTEEEEESCHHHHHHHHHHHHC
T ss_pred             CcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-cCeEEEECCHHHHHHhhhccCC
Confidence            5689999999999999999864 67899999999       9999999887766653 3599999999875 3 444  6


Q ss_pred             ceeEEEeccccccc
Q 027913          194 SVDAVVGTLVLCSV  207 (217)
Q Consensus       194 sfD~V~~~~~l~~~  207 (217)
                      +||+|++.-++++.
T Consensus       161 ~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          161 KPDIVYLDPMYPER  174 (258)
T ss_dssp             CCSEEEECCCC---
T ss_pred             CccEEEECCCCCCc
Confidence            89999998777664

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.07  E-value=2.4e-10  Score=96.28  Aligned_cols=76  Identities=18%  Similarity=0.080  Sum_probs=65.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC-CCCCeEEEecccccccC----CCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIPV----SDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~v~~~~~d~~~l~~----~~~sfD~V~  199 (217)
                      ++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++ . .+++++++|+.++..    .+.+||+|+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-GGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-cceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            7889999999999999999875456899999999999999999998886 4 489999999987631    146899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +.
T Consensus       299 ~d  300 (396)
T 3c0k_A          299 MD  300 (396)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.07  E-value=2.9e-10  Score=91.06  Aligned_cols=76  Identities=12%  Similarity=0.106  Sum_probs=66.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC----CCCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~----~~~sfD~  197 (217)
                      .++.+|||+|||+|..+..+++. .+ .+|+++|+++.+++.+++++...++  .+++++.+|+..++.    ..++||+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~~~fD~  159 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV--LNTIIINADMRKYKDYLLKNEIFFDK  159 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC--CcEEEEeCChHhcchhhhhccccCCE
Confidence            37889999999999999988862 33 7999999999999999999998887  489999999988764    3678999


Q ss_pred             EEec
Q 027913          198 VVGT  201 (217)
Q Consensus       198 V~~~  201 (217)
                      |++.
T Consensus       160 Vl~d  163 (274)
T 3ajd_A          160 ILLD  163 (274)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9986

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.07  E-value=3.2e-10  Score=92.86  Aligned_cols=79  Identities=10%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+.+|||||||+|..+..+++. +..+++++|+++.+++.|++++..  .++..++++++.+|+... +..+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            36789999999999999999875 467999999999999999998754  222125899999998764 33457899999


Q ss_pred             ecc
Q 027913          200 GTL  202 (217)
Q Consensus       200 ~~~  202 (217)
                      +..
T Consensus       195 ~d~  197 (321)
T 2pt6_A          195 VDS  197 (321)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            854

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.07  E-value=7.7e-10  Score=94.65  Aligned_cols=85  Identities=13%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~  199 (217)
                      .++.+|||+|||+|..+..+++. .+ .+++++|+++.+++.+++++...++  .++.++++|+..++  +++++||+|+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~--~~v~~~~~D~~~~~~~~~~~~fD~Vl  335 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI--KIVKPLVKDARKAPEIIGEEVADKVL  335 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCTTCCSSSSCSSCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC--CcEEEEEcChhhcchhhccCCCCEEE
Confidence            47789999999999999998863 33 6899999999999999999998887  58999999998886  5557899999


Q ss_pred             e------cccccccCCh
Q 027913          200 G------TLVLCSVKDV  210 (217)
Q Consensus       200 ~------~~~l~~~~d~  210 (217)
                      +      ..++++.++.
T Consensus       336 ~D~Pcsg~g~~~~~pd~  352 (450)
T 2yxl_A          336 LDAPCTSSGTIGKNPEL  352 (450)
T ss_dssp             EECCCCCGGGTTTSTTH
T ss_pred             EcCCCCCCeeeccChhh
Confidence            5      4455655553

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.06  E-value=5.1e-10  Score=92.23  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=64.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||+|||+|.++.. ++ .+.+|+++|+|+.+++.+++++...++. .+++++++|+..+.   ++||+|++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~-~~v~~~~~D~~~~~---~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLE-HKIIPILSDVREVD---VKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCGGGCC---CCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEECChHHhc---CCCcEEEEC
Confidence            3788999999999999999 86 5779999999999999999999998875 58999999998875   789999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.05  E-value=4.4e-10  Score=90.39  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc--CC-------CCCCeEEEecccccc-cCCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GL-------PLTNFKFLQAVGEAI-PVSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~-------~~~~v~~~~~d~~~l-~~~~~  193 (217)
                      ..+.+|||||||+|..+..+++.+..+++++|+++.+++.|++++ ..  ++       ...+++++.+|+... +. ++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            367899999999999999998775569999999999999999987 33  22       226899999998764 33 57


Q ss_pred             ceeEEEeccc
Q 027913          194 SVDAVVGTLV  203 (217)
Q Consensus       194 sfD~V~~~~~  203 (217)
                      +||+|++...
T Consensus       152 ~fD~Ii~d~~  161 (281)
T 1mjf_A          152 GFDVIIADST  161 (281)
T ss_dssp             CEEEEEEECC
T ss_pred             CeeEEEECCC
Confidence            8999998554

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.05  E-value=3.8e-10  Score=95.02  Aligned_cols=77  Identities=21%  Similarity=0.172  Sum_probs=65.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC----CCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~----~~~sfD~V~  199 (217)
                      .++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++. .+++++++|+.++..    .+++||+|+
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            377899999999999999998764568999999999999999999988874 389999999977631    257899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +.
T Consensus       295 ~d  296 (396)
T 2as0_A          295 LD  296 (396)
T ss_dssp             EC
T ss_pred             EC
Confidence            84

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.05  E-value=3.8e-10  Score=94.70  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=64.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-c-C--CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-P-V--SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~-~--~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++...+++|+++|+.+. + +  ...+||+|++
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~  291 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  291 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence            7789999999999999999865445899999999999999999999887412899999998764 2 1  2458999998


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       292 D  292 (385)
T 2b78_A          292 D  292 (385)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.05  E-value=3.7e-10  Score=92.17  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+.+|||||||+|..+..+++. +..+++++|+++.+++.|++++...  ++...+++++.+|+... +..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            36789999999999999999875 3579999999999999999987543  22126899999998763 34567899999


Q ss_pred             ecc
Q 027913          200 GTL  202 (217)
Q Consensus       200 ~~~  202 (217)
                      +..
T Consensus       187 ~d~  189 (314)
T 2b2c_A          187 TDS  189 (314)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            855

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.05  E-value=9.2e-10  Score=91.84  Aligned_cols=82  Identities=17%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             HHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCC--
Q 027913          117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSD--  192 (217)
Q Consensus       117 ~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~--  192 (217)
                      .+++.+...+.+|||+|||+|.++..+++ ...+|+|+|+++.+++.|++++...++  .+++|+++|++++.  +..  
T Consensus       205 ~~~~~~~~~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng~--~~v~~~~~d~~~~~~~~~~~~  281 (369)
T 3bt7_A          205 WALDVTKGSKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANHI--DNVQIIRMAAEEFTQAMNGVR  281 (369)
T ss_dssp             HHHHHTTTCCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTTC--CSEEEECCCSHHHHHHHSSCC
T ss_pred             HHHHHhhcCCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcCC--CceEEEECCHHHHHHHHhhcc
Confidence            34444433467899999999999998885 456899999999999999999998888  58999999998752  222  


Q ss_pred             ------------CceeEEEec
Q 027913          193 ------------ASVDAVVGT  201 (217)
Q Consensus       193 ------------~sfD~V~~~  201 (217)
                                  .+||+|+..
T Consensus       282 ~~~~l~~~~~~~~~fD~Vv~d  302 (369)
T 3bt7_A          282 EFNRLQGIDLKSYQCETIFVD  302 (369)
T ss_dssp             CCTTGGGSCGGGCCEEEEEEC
T ss_pred             ccccccccccccCCCCEEEEC
Confidence                        379999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.05  E-value=5.1e-10  Score=89.86  Aligned_cols=72  Identities=14%  Similarity=0.190  Sum_probs=57.5

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCC---CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTD---VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      ...+++.+. .++.+|||||||+|.++..+++...   .+|+|+|+++.|++.++++.   .   .+++++++|+..+++
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~---~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G---ELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G---GGEEEEESCGGGCCG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C---CCcEEEECChhcCCh
Confidence            344555554 5778999999999999999986322   23999999999999999983   1   589999999999876


Q ss_pred             CC
Q 027913          191 SD  192 (217)
Q Consensus       191 ~~  192 (217)
                      ++
T Consensus       105 ~~  106 (279)
T 3uzu_A          105 GS  106 (279)
T ss_dssp             GG
T ss_pred             hH
Confidence            53

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.05  E-value=3.2e-10  Score=86.20  Aligned_cols=71  Identities=18%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-C--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----------
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-T--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------  189 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----------  189 (217)
                      .++.+|||||||+|.++..+++. +  +.+|+|+|+++.+           ..  .++.++++|+...+           
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--PNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--TTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--CCceEEEccccchhhhhhccccccc
Confidence            46789999999999999999864 3  5789999999831           12  47899999998876           


Q ss_pred             --------------CCCCceeEEEeccccccc
Q 027913          190 --------------VSDASVDAVVGTLVLCSV  207 (217)
Q Consensus       190 --------------~~~~sfD~V~~~~~l~~~  207 (217)
                                    +++++||+|++..++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~  119 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCI  119 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCC
Confidence                          566799999998887764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.04  E-value=1.3e-09  Score=92.44  Aligned_cols=73  Identities=22%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...++  . ++|+++|+.++.. . +||+|++.-.
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl--~-v~~~~~d~~~~~~-~-~fD~Vv~dPP  362 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNV--D-AEFEVASDREVSV-K-GFDTVIVDPP  362 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC--C-EEEEECCTTTCCC-T-TCSEEEECCC
T ss_pred             CCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--c-EEEEECChHHcCc-c-CCCEEEEcCC
Confidence            7789999999999999999864 67999999999999999999988886  4 8999999998743 2 8999998543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.04  E-value=5.4e-10  Score=92.69  Aligned_cols=90  Identities=13%  Similarity=0.053  Sum_probs=72.0

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      .+++.+. ....+|||||||+|.++..+++ .+..++++.|+ +++++.|++.....+.  ++++|+.+|+...|.+  .
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~--~rv~~~~gD~~~~~~~--~  244 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEE--EQIDFQEGDFFKDPLP--E  244 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--C--CSEEEEESCTTTSCCC--C
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhccc--CceeeecCccccCCCC--C
Confidence            3444443 4567999999999999999986 67788999998 8899999988754443  6999999999776554  4


Q ss_pred             eeEEEecccccccCChh
Q 027913          195 VDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       195 fD~V~~~~~l~~~~d~~  211 (217)
                      +|+|++.++||+++|.+
T Consensus       245 ~D~~~~~~vlh~~~d~~  261 (353)
T 4a6d_A          245 ADLYILARVLHDWADGK  261 (353)
T ss_dssp             CSEEEEESSGGGSCHHH
T ss_pred             ceEEEeeeecccCCHHH
Confidence            79999999999998864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=99.01  E-value=3.5e-10  Score=89.55  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=61.1

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCe--EEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQ--VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      +...+++.+. .++.+|||||||+|.++. +.+  +.+  |+++|+++.|++.+++++...    .+++++++|+..+++
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~----~~v~~i~~D~~~~~~   81 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC----CceEEEECchhhCCH
Confidence            3344555554 467899999999999999 754  345  999999999999999876432    479999999999875


Q ss_pred             CC-----CceeEEEecc
Q 027913          191 SD-----ASVDAVVGTL  202 (217)
Q Consensus       191 ~~-----~sfD~V~~~~  202 (217)
                      ++     +..|.|+++.
T Consensus        82 ~~~~~~~~~~~~vvsNl   98 (252)
T 1qyr_A           82 GELAEKMGQPLRVFGNL   98 (252)
T ss_dssp             HHHHHHHTSCEEEEEEC
T ss_pred             HHhhcccCCceEEEECC
Confidence            43     2345666554

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.01  E-value=1.4e-09  Score=91.42  Aligned_cols=84  Identities=19%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CC--------------------------------------CCeEEEecCC
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DT--------------------------------------DVQVLGVDPN  157 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~--------------------------------------~~~v~gvD~s  157 (217)
                      ++.... .++..|||.+||+|.++..++. ..                                      ..+++|+|++
T Consensus       193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            344433 4678999999999999877663 11                                      1469999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          158 RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       158 ~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      +.|++.|++++...++. .+++++++|+.+++.+ .+||+|+++--
T Consensus       273 ~~al~~Ar~Na~~~gl~-~~I~~~~~D~~~~~~~-~~fD~Iv~NPP  316 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAGLG-DLITFRQLQVADFQTE-DEYGVVVANPP  316 (393)
T ss_dssp             HHHHHHHHHHHHHTTCT-TCSEEEECCGGGCCCC-CCSCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCC-CceEEEECChHhCCCC-CCCCEEEECCC
Confidence            99999999999999985 5699999999998765 58999999843

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.00  E-value=3.7e-10  Score=94.98  Aligned_cols=74  Identities=14%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEecccccc-cC-CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAI-PV-SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l-~~-~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|..+..+++ .+.+|+++|+++.|++.|++++...  ++  .+++++++|+... +. ++++||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~-~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMS-KASQGIYIERNDETAVAARHNIPLLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHh-cCCEEEEEECCHHHHHHHHHhHHHhccCC--CcEEEEECcHHHhhhhccCCCceEEEE
Confidence            478999999999999988874 4679999999999999999999887  76  5899999999874 32 3468999998


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.99  E-value=1.4e-09  Score=91.22  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=68.5

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC-C--------------------------------------CCeEEEecCC
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-T--------------------------------------DVQVLGVDPN  157 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~--------------------------------------~~~v~gvD~s  157 (217)
                      ++.... .++.+|||++||+|.++..++.. .                                      ..+|+|+|++
T Consensus       187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            344443 46789999999999998776641 1                                      1479999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          158 RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       158 ~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      +.|++.|++++...++. .+++|.++|+.+++.+ .+||+|+++--+
T Consensus       267 ~~ai~~Ar~Na~~~gl~-~~i~~~~~D~~~l~~~-~~~D~Iv~NPPy  311 (385)
T 3ldu_A          267 EESIDIARENAEIAGVD-EYIEFNVGDATQFKSE-DEFGFIITNPPY  311 (385)
T ss_dssp             HHHHHHHHHHHHHHTCG-GGEEEEECCGGGCCCS-CBSCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCC-CceEEEECChhhcCcC-CCCcEEEECCCC
Confidence            99999999999998875 5799999999998764 589999996554

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.98  E-value=3e-10  Score=90.48  Aligned_cols=74  Identities=11%  Similarity=-0.106  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      ..+++|||||||+|..++.+++.. .+++++|+++.+++.|++.+..  .++..++++++.+|+....   ++||+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            366899999999999999888774 8999999999999999986532  1121258999999998764   789999986

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.98  E-value=1.1e-09  Score=88.26  Aligned_cols=80  Identities=9%  Similarity=0.035  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      .++.+|||||||+|..+..+++.. ..+++++|+++.+++.+++++...+  +..++++++.+|+... +..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            467899999999999999998653 5799999999999999999875431  2125899999998774 33367899999


Q ss_pred             eccc
Q 027913          200 GTLV  203 (217)
Q Consensus       200 ~~~~  203 (217)
                      +...
T Consensus       157 ~d~~  160 (283)
T 2i7c_A          157 VDSS  160 (283)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            8543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.98  E-value=2.6e-09  Score=89.48  Aligned_cols=78  Identities=17%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CC--------------------------------------CCeEEEecCCHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DT--------------------------------------DVQVLGVDPNRKMEKYA  164 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~--------------------------------------~~~v~gvD~s~~~l~~a  164 (217)
                      .++..|||.+||+|.++..++. ..                                      ..+++|+|+++.|++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            4678999999999999877663 11                                      14699999999999999


Q ss_pred             HHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          165 QTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       165 ~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++++...++. .+++++++|+.+++.+ .+||+|+++--
T Consensus       273 r~Na~~~gl~-~~I~~~~~D~~~l~~~-~~fD~Iv~NPP  309 (384)
T 3ldg_A          273 RKNAREVGLE-DVVKLKQMRLQDFKTN-KINGVLISNPP  309 (384)
T ss_dssp             HHHHHHTTCT-TTEEEEECCGGGCCCC-CCSCEEEECCC
T ss_pred             HHHHHHcCCC-CceEEEECChHHCCcc-CCcCEEEECCc
Confidence            9999999985 5799999999999765 58999999743

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.97  E-value=4.3e-10  Score=94.29  Aligned_cols=74  Identities=22%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC----CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~----~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++++...++  .+++++++|+.++..    .+++||+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~--~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL--GNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC--TTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC--CCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            6779999999999999999866 67899999999999999999999887  469999999987631    2578999997


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       286 d  286 (382)
T 1wxx_A          286 D  286 (382)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.96  E-value=5.4e-11  Score=93.80  Aligned_cols=78  Identities=17%  Similarity=0.197  Sum_probs=62.4

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC-Cce
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASV  195 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~-~sf  195 (217)
                      +++.+. .++.+|||||||+|.++..+++. +.+++|+|+++.|++.++++..  ..  .+++++++|+..+++++ ++|
T Consensus        21 i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~--~~--~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK--LN--TRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT--TC--SEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc--cC--CceEEEECChhhcCcccCCCc
Confidence            444444 46779999999999999999864 4789999999999999987764  22  58999999999998764 688


Q ss_pred             eEEEec
Q 027913          196 DAVVGT  201 (217)
Q Consensus       196 D~V~~~  201 (217)
                       .|+++
T Consensus        96 -~vv~n  100 (245)
T 1yub_A           96 -KIVGN  100 (245)
T ss_dssp             -EEEEE
T ss_pred             -EEEEe
Confidence             56554

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.96  E-value=8.4e-11  Score=94.34  Aligned_cols=78  Identities=15%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH-HcCCCCCCeEEE--ecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFL--QAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~--~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||||||+|.++..+++.  .+|+|+|+++ |+..+++... ..... .++.++  ++|+..++  +++||+|++
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~Vvs  154 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME--PFQADTVLC  154 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC--CCCcCEEEE
Confidence            46789999999999999999865  6899999998 6433322100 00010 168999  99999876  679999999


Q ss_pred             cccccccC
Q 027913          201 TLVLCSVK  208 (217)
Q Consensus       201 ~~~l~~~~  208 (217)
                      ..+ ++..
T Consensus       155 d~~-~~~~  161 (276)
T 2wa2_A          155 DIG-ESNP  161 (276)
T ss_dssp             CCC-CCCS
T ss_pred             CCC-cCCC
Confidence            877 4443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.95  E-value=8e-10  Score=83.87  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=56.0

Q ss_pred             HHHHHhc--CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC----
Q 027913          117 QLFDNLR--GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV----  190 (217)
Q Consensus       117 ~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~----  190 (217)
                      ++.+++.  .++.+|||+|||+|.++..+++. +.+|+|+|+++..           .+  .+++++++|+...+.    
T Consensus        15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~--~~v~~~~~D~~~~~~~~~~   80 (191)
T 3dou_A           15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI--AGVRFIRCDIFKETIFDDI   80 (191)
T ss_dssp             HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC--TTCEEEECCTTSSSHHHHH
T ss_pred             HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC--CCeEEEEccccCHHHHHHH
Confidence            3444443  57889999999999999999865 7899999999741           12  578999999987641    


Q ss_pred             ----C---CCceeEEEeccc
Q 027913          191 ----S---DASVDAVVGTLV  203 (217)
Q Consensus       191 ----~---~~sfD~V~~~~~  203 (217)
                          .   .++||+|++...
T Consensus        81 ~~~~~~~~~~~~D~Vlsd~~  100 (191)
T 3dou_A           81 DRALREEGIEKVDDVVSDAM  100 (191)
T ss_dssp             HHHHHHHTCSSEEEEEECCC
T ss_pred             HHHhhcccCCcceEEecCCC
Confidence                1   148999999654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.95  E-value=1.8e-09  Score=92.99  Aligned_cols=74  Identities=14%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD~V~~  200 (217)
                      ++.+|||+|||+|..+..+++.  ....|+++|+++.+++.+++++...++  .++.++++|+..++. .+++||+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~--~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI--SNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC--CSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--CcEEEEeCCHHHhhhhccccCCEEEE
Confidence            7789999999999999998863  346899999999999999999998887  589999999998763 4578999997

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.94  E-value=2.7e-09  Score=89.69  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=63.2

Q ss_pred             HHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeE
Q 027913          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDA  197 (217)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~  197 (217)
                      +..+..++.+|||+|||+|.++..+++. +..|+++|+|+.+++.+++++...++.   .++.++|+.++. ...+.||+
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~---~~~~~~D~~~~l~~~~~~fD~  283 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR---VDIRHGEALPTLRGLEGPFHH  283 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC---CEEEESCHHHHHHTCCCCEEE
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC---CcEEEccHHHHHHHhcCCCCE
Confidence            3333335899999999999999999865 556999999999999999999988874   357799987753 22344999


Q ss_pred             EEecc
Q 027913          198 VVGTL  202 (217)
Q Consensus       198 V~~~~  202 (217)
                      |++.-
T Consensus       284 Ii~dp  288 (393)
T 4dmg_A          284 VLLDP  288 (393)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99853

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.94  E-value=1.3e-09  Score=93.11  Aligned_cols=74  Identities=16%  Similarity=0.105  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.  ....|+++|+++.+++.+++++...|+  . +.++++|+..++ +.+++||+|++
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~--~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA--P-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC--C-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC--e-EEEEECCHHHhhhhccccCCEEEE
Confidence            47889999999999999998863  336899999999999999999999997  4 899999998876 34678999995

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.94  E-value=6.2e-09  Score=84.73  Aligned_cols=75  Identities=17%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC---CceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD---ASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~---~sfD~V  198 (217)
                      .++.+|||+|||+|..+..+++  ....+|+++|+++.+++.++++++..++  .+++++.+|+..++...   .+||.|
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~--~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV--SCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEeCChHhcCccccccCCCCEE
Confidence            4788999999999999998886  3457899999999999999999999888  58999999998875322   579999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      ++
T Consensus       179 l~  180 (309)
T 2b9e_A          179 LL  180 (309)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.92  E-value=1.3e-10  Score=92.71  Aligned_cols=79  Identities=15%  Similarity=0.154  Sum_probs=56.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH-HcCCCCCCeEEE--ecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFL--QAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~--~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||||||+|.++..+++.  .+|+|||+++ |+..+++... ..... .++.++  ++|+..++  +++||+|++
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~V~s  146 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP--VERTDVIMC  146 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC--CCCCcEEEE
Confidence            47789999999999999998865  6899999998 5433221100 00000 168899  99999876  679999999


Q ss_pred             cccccccCC
Q 027913          201 TLVLCSVKD  209 (217)
Q Consensus       201 ~~~l~~~~d  209 (217)
                      ..+ ++..+
T Consensus       147 d~~-~~~~~  154 (265)
T 2oxt_A          147 DVG-ESSPK  154 (265)
T ss_dssp             CCC-CCCSC
T ss_pred             eCc-ccCCc
Confidence            877 54433

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.92  E-value=9.8e-11  Score=91.66  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=38.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA  168 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~  168 (217)
                      ..+.+|||||||+|.++..+++....+|+|+|+|++|++.++++.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            356799999999999999998764459999999999999877653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.92  E-value=1.5e-09  Score=82.05  Aligned_cols=70  Identities=20%  Similarity=0.207  Sum_probs=53.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC----------CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE-eccccccc---
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD----------VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIP---  189 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~-~~d~~~l~---  189 (217)
                      .++.+|||||||+|.++..+++..+          .+++|+|+++.+           .+  .+++++ .+|+...+   
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~--~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL--EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC--TTCEEECSCCTTSHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC--CCCeEEEeccCCCHHHHH
Confidence            4788999999999999999987432          689999999841           12  478899 99987653   


Q ss_pred             -----CCCCceeEEEecccccc
Q 027913          190 -----VSDASVDAVVGTLVLCS  206 (217)
Q Consensus       190 -----~~~~sfD~V~~~~~l~~  206 (217)
                           +++++||+|++...++.
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNA  109 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCC
Confidence                 34568999999665543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.89  E-value=4.4e-09  Score=86.82  Aligned_cols=92  Identities=23%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             HHHHHHHhc--CCCCeEEEECCcCCcchHhhhhCC------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913          115 KSQLFDNLR--GKAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (217)
Q Consensus       115 ~~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  186 (217)
                      ...++..+.  .++.+|||+|||+|.++..+++..      ..+++|+|+++.+++.|+.++...++   ++.++++|..
T Consensus       118 ~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~---~~~i~~~D~l  194 (344)
T 2f8l_A          118 VAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGL  194 (344)
T ss_dssp             HHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTT
T ss_pred             HHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC---CceEEECCCC
Confidence            344444442  356799999999999988877532      16899999999999999999887775   5789999976


Q ss_pred             cccCCCCceeEEEecccccccCCh
Q 027913          187 AIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       187 ~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                      .. ...+.||+|+++-.+.+++..
T Consensus       195 ~~-~~~~~fD~Ii~NPPfg~~~~~  217 (344)
T 2f8l_A          195 AN-LLVDPVDVVISDLPVGYYPDD  217 (344)
T ss_dssp             SC-CCCCCEEEEEEECCCSEESCH
T ss_pred             Cc-cccCCccEEEECCCCCCcCch
Confidence            63 345789999999887776543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.89  E-value=3.8e-09  Score=90.15  Aligned_cols=75  Identities=16%  Similarity=0.076  Sum_probs=65.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++.  ....|+++|+++.+++.+++++...|+  .++.++.+|+..++ ..+++||+|++
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~--~nv~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV--SNAIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC--SSEEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CceEEEeCCHHHhhhhccccCCEEEE
Confidence            47889999999999999888863  346899999999999999999999998  58999999998875 34578999997

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.88  E-value=7e-09  Score=88.18  Aligned_cols=84  Identities=15%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~  200 (217)
                      .++.+|||+|||+|..+..+++. ++.+++++|+++.+++.+++++...++   ++.++++|+..++  +++++||+|++
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC---CeEEEeCchhhchhhcccCCCCEEEE
Confidence            47889999999999999998863 347999999999999999999998886   4789999998876  56678999995


Q ss_pred             ------cccccccCCh
Q 027913          201 ------TLVLCSVKDV  210 (217)
Q Consensus       201 ------~~~l~~~~d~  210 (217)
                            ..++++.++.
T Consensus       322 D~Pcsg~g~~~~~p~~  337 (429)
T 1sqg_A          322 DAPCSATGVIRRHPDI  337 (429)
T ss_dssp             ECCCCCGGGTTTCTTH
T ss_pred             eCCCCcccccCCCcch
Confidence                  3355555553

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.74  E-value=6.2e-08  Score=85.50  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             CCCeEEEECCcCCcchHhhh---hCCCC--eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYA---ADTDV--QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~---~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~  199 (217)
                      ....|||||||+|.+....+   +..+.  +|++||.|+ |...+++..+..++. ++|+++.+|++++.++ +++|+||
T Consensus       357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~-dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWG-SQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTG-GGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCC-CeEEEEeCcceeccCC-cccCEEE
Confidence            44679999999998843333   23333  789999997 677888888888887 7999999999999876 6899999


Q ss_pred             eccc
Q 027913          200 GTLV  203 (217)
Q Consensus       200 ~~~~  203 (217)
                      +-.+
T Consensus       434 SEwM  437 (637)
T 4gqb_A          434 SELL  437 (637)
T ss_dssp             CCCC
T ss_pred             EEcC
Confidence            8543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.72  E-value=3.3e-08  Score=82.60  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=63.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHc---------------CCCCCCeEEEecccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAA---------------GLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~v~~~~~d~~~l  188 (217)
                      ++.+|||+|||+|..+..+++. ++.+|+++|+++.+++.++++++..               ++  .+++++++|+..+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--KTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS--SEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC--CceEEEcCcHHHH
Confidence            7889999999999999998874 5568999999999999999999887               76  3599999999876


Q ss_pred             c-CCCCceeEEEec
Q 027913          189 P-VSDASVDAVVGT  201 (217)
Q Consensus       189 ~-~~~~sfD~V~~~  201 (217)
                      . ...+.||+|+..
T Consensus       125 ~~~~~~~fD~I~lD  138 (378)
T 2dul_A          125 MAERHRYFHFIDLD  138 (378)
T ss_dssp             HHHSTTCEEEEEEC
T ss_pred             HHhccCCCCEEEeC
Confidence            3 123579999953

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.69  E-value=5e-08  Score=83.29  Aligned_cols=93  Identities=16%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--------------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeE
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFK  179 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~  179 (217)
                      .+.+++.+. .++.+|||.|||+|.++..+++.              ...+++|+|+++.+++.|+.++...++...++.
T Consensus       160 ~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          160 IQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            334444443 35679999999999998777642              235799999999999999999887776312678


Q ss_pred             EEecccccccCCCCceeEEEecccccccC
Q 027913          180 FLQAVGEAIPVSDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       180 ~~~~d~~~l~~~~~sfD~V~~~~~l~~~~  208 (217)
                      +.++|....+.. ..||+|+++-.+....
T Consensus       240 i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          240 IVCEDSLEKEPS-TLVDVILANPPFGTRP  267 (445)
T ss_dssp             EEECCTTTSCCS-SCEEEEEECCCSSCCC
T ss_pred             EeeCCCCCCccc-CCcCEEEECCCCCCcc
Confidence            899998877654 4899999987666543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.68  E-value=6.9e-08  Score=86.79  Aligned_cols=78  Identities=18%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-------------------------------------------CCCeEEEecCCHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-------------------------------------------TDVQVLGVDPNRKM  160 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~~  160 (217)
                      .++..|||.+||+|.++..++..                                           ....++|+|+++.|
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            46779999999999998765531                                           12479999999999


Q ss_pred             HHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEecc
Q 027913          161 EKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGTL  202 (217)
Q Consensus       161 l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~~  202 (217)
                      ++.|++++...|+. ..++|.++|+..+.  ...++||+|+++-
T Consensus       269 v~~A~~N~~~agv~-~~i~~~~~D~~~~~~~~~~~~~d~Iv~NP  311 (703)
T 3v97_A          269 IQRARTNARLAGIG-ELITFEVKDVAQLTNPLPKGPYGTVLSNP  311 (703)
T ss_dssp             HHHHHHHHHHTTCG-GGEEEEECCGGGCCCSCTTCCCCEEEECC
T ss_pred             HHHHHHHHHHcCCC-CceEEEECChhhCccccccCCCCEEEeCC
Confidence            99999999999985 46999999999883  3344899999983

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.66  E-value=2e-08  Score=79.51  Aligned_cols=79  Identities=11%  Similarity=0.065  Sum_probs=60.4

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC--------CCCCCeEEEecccccc-cCCCCceeE
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG--------LPLTNFKFLQAVGEAI-PVSDASVDA  197 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~~~~~d~~~l-~~~~~sfD~  197 (217)
                      .+|||+|||+|..+..+++. +.+|+++|+++.++..+++.++...        +. .+++++++|...+ +.....||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~-~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQ-ERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHH-HHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhh-cCEEEEECCHHHHHHhCcccCCE
Confidence            89999999999999999865 5589999999988777766653221        11 3689999999874 322247999


Q ss_pred             EEeccccccc
Q 027913          198 VVGTLVLCSV  207 (217)
Q Consensus       198 V~~~~~l~~~  207 (217)
                      |++.-++.+-
T Consensus       168 V~lDP~y~~~  177 (258)
T 2oyr_A          168 VYLDPMFPHK  177 (258)
T ss_dssp             EEECCCCCCC
T ss_pred             EEEcCCCCCc
Confidence            9998777653

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.63  E-value=2.7e-08  Score=84.06  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      ++.+|||+|||+|.++..+++.  ...+++|+|+++.+++.|           .++.++++|+...+ +.+.||+|+++-
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~~~~-~~~~fD~Ii~NP  106 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWE-PGEAFDLILGNP  106 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCC-CSSCEEEEEECC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChhhcC-ccCCCCEEEECc
Confidence            5679999999999999988863  567999999999988776           26789999998875 346899999963

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.60  E-value=6.4e-08  Score=81.06  Aligned_cols=77  Identities=10%  Similarity=0.017  Sum_probs=64.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CC-CeEEEecCCHHHHHHHHHHHHHcCCCCCC-eEEEeccccccc--CCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTN-FKFLQAVGEAIP--VSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-v~~~~~d~~~l~--~~~~sfD~V~  199 (217)
                      ++.+|||++||+|.++..+++. .+ .+|+++|+++.+++.++++++..++. .+ ++++.+|+..+.  ...+.||+|+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-EDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-GGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            6789999999999999988863 34 68999999999999999999999984 34 999999987652  2246799999


Q ss_pred             ecc
Q 027913          200 GTL  202 (217)
Q Consensus       200 ~~~  202 (217)
                      +.-
T Consensus       131 lDP  133 (392)
T 3axs_A          131 LDP  133 (392)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            754

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.59  E-value=5e-09  Score=85.15  Aligned_cols=74  Identities=18%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecC----CHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDP----NRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|.++..+++.  .+|+|+|+    ++.+++...  ....+.  .++.++++ |+..++  .++||+|
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~--~~v~~~~~~D~~~l~--~~~fD~V  152 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGW--NLVRLQSGVDVFFIP--PERCDTL  152 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTG--GGEEEECSCCTTTSC--CCCCSEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCC--CCeEEEeccccccCC--cCCCCEE
Confidence            46789999999999999999865  47999999    565442111  011121  47899999 888775  4689999


Q ss_pred             Eeccccc
Q 027913          199 VGTLVLC  205 (217)
Q Consensus       199 ~~~~~l~  205 (217)
                      +|..+++
T Consensus       153 ~sd~~~~  159 (305)
T 2p41_A          153 LCDIGES  159 (305)
T ss_dssp             EECCCCC
T ss_pred             EECCccc
Confidence            9977653

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.59  E-value=1.2e-07  Score=83.91  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=58.3

Q ss_pred             CCeEEEECCcCCcchHhhh---hC-----------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          126 AKKVLEIGIGTGPNLKYYA---AD-----------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~---~~-----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      ++.|||||||+|.+....+   +.           ...+|++||.|+.++...+.+.. .++. ++|+++.+|++++.++
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~-d~VtVI~gd~eev~lp  487 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWK-RRVTIIESDMRSLPGI  487 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTT-TCSEEEESCGGGHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCC-CeEEEEeCchhhcccc
Confidence            5689999999999864322   11           12489999999987766665554 6775 6799999999998763


Q ss_pred             -----CCceeEEEeccc
Q 027913          192 -----DASVDAVVGTLV  203 (217)
Q Consensus       192 -----~~sfD~V~~~~~  203 (217)
                           .+++|+||+-.+
T Consensus       488 ~~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          488 AKDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHHTTCCCCSEEEECCC
T ss_pred             cccCCCCcccEEEEecc
Confidence                 578999998665

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.52  E-value=2.5e-07  Score=73.57  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=68.0

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V  190 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~  190 (217)
                      .+++.+. .++..+||.+||.|.++..+++. +.+|+|+|.++.+++.|++ +..     .++.++.+++..++     .
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-----~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-----PGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-----TTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-----CCEEEEECCcchHHHHHHHc
Confidence            3445554 47889999999999999999976 6799999999999999998 532     48999999998874     2


Q ss_pred             CCCceeEEEeccc--ccccCChhh
Q 027913          191 SDASVDAVVGTLV--LCSVKDVDM  212 (217)
Q Consensus       191 ~~~sfD~V~~~~~--l~~~~d~~~  212 (217)
                      ..++||.|+.-..  -+++.++++
T Consensus        86 g~~~vDgIL~DLGvSS~Qld~~~R  109 (285)
T 1wg8_A           86 GVERVDGILADLGVSSFHLDDPSR  109 (285)
T ss_dssp             TCSCEEEEEEECSCCHHHHHCGGG
T ss_pred             CCCCcCEEEeCCcccccccccccc
Confidence            3357999997433  333444443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.47  E-value=9.1e-07  Score=67.35  Aligned_cols=60  Identities=18%  Similarity=0.130  Sum_probs=50.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC--CCCCeEEEeccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL--PLTNFKFLQAVGEA  187 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~  187 (217)
                      +.++||||||  |+.+..+++..+.+|+.+|.+++..+.|++++++.++  . .+++++.+|+.+
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~-~~I~~~~gda~~   91 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEG-TEVNIVWTDIGP   91 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTT-CEEEEEECCCSS
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-CceEEEEeCchh
Confidence            5789999998  4667777754478999999999999999999999886  4 689999999643

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.46  E-value=7.2e-08  Score=69.00  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=48.7

Q ss_pred             CCCeEEEECCcCC-cchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC-CceeEEEecc
Q 027913          125 KAKKVLEIGIGTG-PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD-ASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~-~sfD~V~~~~  202 (217)
                      ++.+|||||||.| ..+..|++..+..|+++|+++..+                 .+++.|+.+..+.. ..||+|++..
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-----------------~~v~dDiF~P~~~~Y~~~DLIYsir   97 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-----------------GIVRDDITSPRMEIYRGAALIYSIR   97 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-----------------TEECCCSSSCCHHHHTTEEEEEEES
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-----------------ceEEccCCCCcccccCCcCEEEEcC
Confidence            5689999999999 488888865788999999998732                 28888886633211 3799998765


Q ss_pred             cccc
Q 027913          203 VLCS  206 (217)
Q Consensus       203 ~l~~  206 (217)
                      --..
T Consensus        98 PP~E  101 (153)
T 2k4m_A           98 PPAE  101 (153)
T ss_dssp             CCTT
T ss_pred             CCHH
Confidence            4433

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.32  E-value=3.5e-06  Score=73.51  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhC----CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--c-CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD----TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--P-VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~-~~~~sfD~  197 (217)
                      ++.+|||.+||+|.++..+++.    ....++|+|+++.++..|+.++.-.|+...++.+.++|....  | .....||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            5679999999999998777653    256899999999999999999887887434688999998765  4 45678999


Q ss_pred             EEecccc
Q 027913          198 VVGTLVL  204 (217)
Q Consensus       198 V~~~~~l  204 (217)
                      |+++--+
T Consensus       301 IvaNPPf  307 (542)
T 3lkd_A          301 VLMNPPY  307 (542)
T ss_dssp             EEECCCT
T ss_pred             EEecCCc
Confidence            9987433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.26  E-value=1.3e-06  Score=76.26  Aligned_cols=89  Identities=10%  Similarity=-0.029  Sum_probs=65.1

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC---C----------------CCeEEEecCCHHHHHHHHHHHHHcCCCC--
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---T----------------DVQVLGVDPNRKMEKYAQTAAVAAGLPL--  175 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~----------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~--  175 (217)
                      +++.+. .++.+|||.|||+|.++..+++.   .                ...++|+|+++.+++.|+.++.-.++..  
T Consensus       161 mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~  240 (541)
T 2ar0_A          161 IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNL  240 (541)
T ss_dssp             HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBG
T ss_pred             HHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccc
Confidence            344443 35679999999999988766541   1                2379999999999999999987777631  


Q ss_pred             -CCeEEEeccccccc-CCCCceeEEEecccccc
Q 027913          176 -TNFKFLQAVGEAIP-VSDASVDAVVGTLVLCS  206 (217)
Q Consensus       176 -~~v~~~~~d~~~l~-~~~~sfD~V~~~~~l~~  206 (217)
                       .++.+.++|....+ ...+.||+|+++--+..
T Consensus       241 ~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~  273 (541)
T 2ar0_A          241 DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGS  273 (541)
T ss_dssp             GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTT
T ss_pred             cccCCeEeCCCcccccccccCCeEEEECCCccc
Confidence             02778999976654 34578999999765543

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.26  E-value=8e-07  Score=71.51  Aligned_cols=62  Identities=13%  Similarity=0.187  Sum_probs=47.0

Q ss_pred             CCCCeEEEECCcC------CcchHhhhh-CC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEE-EecccccccCCCCc
Q 027913          124 GKAKKVLEIGIGT------GPNLKYYAA-DT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKF-LQAVGEAIPVSDAS  194 (217)
Q Consensus       124 ~~~~~vLDiGcG~------G~~~~~l~~-~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~-~~~d~~~l~~~~~s  194 (217)
                      .++.+|||||||+      |.  ..+++ .+ +.+|+|+|+++.             +  .++++ +++|+..++++ ++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v--~~v~~~i~gD~~~~~~~-~~  123 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V--SDADSTLIGDCATVHTA-NK  123 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B--CSSSEEEESCGGGCCCS-SC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C--CCCEEEEECccccCCcc-Cc
Confidence            4778999999955      54  33333 22 578999999987             1  35778 99999988765 68


Q ss_pred             eeEEEeccc
Q 027913          195 VDAVVGTLV  203 (217)
Q Consensus       195 fD~V~~~~~  203 (217)
                      ||+|++...
T Consensus       124 fD~Vvsn~~  132 (290)
T 2xyq_A          124 WDLIISDMY  132 (290)
T ss_dssp             EEEEEECCC
T ss_pred             ccEEEEcCC
Confidence            999999754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.24  E-value=1.4e-06  Score=76.00  Aligned_cols=91  Identities=19%  Similarity=0.137  Sum_probs=65.6

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC----------------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCC
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD----------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN  177 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~  177 (217)
                      ..+.+++.+.....+|||.+||+|.++..+++.                ....++|+|+++.++..|+.++.-.++. .+
T Consensus       233 Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~~  311 (544)
T 3khk_A          233 IVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-FN  311 (544)
T ss_dssp             HHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-CB
T ss_pred             HHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-cc
Confidence            344444444433459999999999987665431                0357999999999999999999888875 34


Q ss_pred             eEEEeccccccc-CCCCceeEEEeccccc
Q 027913          178 FKFLQAVGEAIP-VSDASVDAVVGTLVLC  205 (217)
Q Consensus       178 v~~~~~d~~~l~-~~~~sfD~V~~~~~l~  205 (217)
                      +.+.++|....+ +.+..||+|+++--+.
T Consensus       312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          312 FGKKNADSFLDDQHPDLRADFVMTNPPFN  340 (544)
T ss_dssp             CCSSSCCTTTSCSCTTCCEEEEEECCCSS
T ss_pred             cceeccchhcCcccccccccEEEECCCcC
Confidence            444788866554 4567899999975443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.23  E-value=3.6e-06  Score=70.13  Aligned_cols=86  Identities=17%  Similarity=0.167  Sum_probs=59.7

Q ss_pred             CCeEEEECCcCCcchHhhhhC------------------CCCeEEEecCC-----------HHHHHHHHHHHHHcCCCCC
Q 027913          126 AKKVLEIGIGTGPNLKYYAAD------------------TDVQVLGVDPN-----------RKMEKYAQTAAVAAGLPLT  176 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~  176 (217)
                      ..+|+|+||++|.++..+...                  +..+|+.-|+.           +.+.+.+++.   .+-. .
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~-~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRK-I  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCC-T
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCC-C
Confidence            578999999999887766542                  34589999998           5544443221   2211 1


Q ss_pred             CeEEEecccccc---cCCCCceeEEEecccccccCChhhhhc
Q 027913          177 NFKFLQAVGEAI---PVSDASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       177 ~v~~~~~d~~~l---~~~~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      +..|+.+....+   .|++++||+|+++++|||+.+....|.
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~  170 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLV  170 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC--
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhh
Confidence            246777766553   588999999999999999988765443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.18  E-value=4.2e-06  Score=67.57  Aligned_cols=59  Identities=20%  Similarity=0.128  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG  172 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~  172 (217)
                      .+...+++....++..|||++||+|..+..++ ..+.+++|+|+++.+++.|++++....
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~-~~g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAA-RWGRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            44555565555688899999999999998876 467899999999999999999987653

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.14  E-value=2.7e-05  Score=62.48  Aligned_cols=78  Identities=21%  Similarity=0.281  Sum_probs=63.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--C-CCCCCeEEEeccccccc-CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--G-LPLTNFKFLQAVGEAIP-VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~-~~~~~v~~~~~d~~~l~-~~~~sfD~V  198 (217)
                      +.+++||=||.|.|..++.+++.+ ..+++.||+++.+++.+++.+...  + +..++++++.+|+...- -..++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            578999999999999999999755 468999999999999999887432  1 22368999999998763 445789999


Q ss_pred             Eec
Q 027913          199 VGT  201 (217)
Q Consensus       199 ~~~  201 (217)
                      +.-
T Consensus       162 i~D  164 (294)
T 3o4f_A          162 ISD  164 (294)
T ss_dssp             EES
T ss_pred             EEe
Confidence            863

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.14  E-value=6.8e-06  Score=68.34  Aligned_cols=89  Identities=10%  Similarity=0.022  Sum_probs=58.6

Q ss_pred             CCeEEEECCcCCcchHhhhh----------------CCCCeEEEecCCHHHHHHHHHHHHHcC-----------CCCCCe
Q 027913          126 AKKVLEIGIGTGPNLKYYAA----------------DTDVQVLGVDPNRKMEKYAQTAAVAAG-----------LPLTNF  178 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~----------------~~~~~v~gvD~s~~~l~~a~~~~~~~~-----------~~~~~v  178 (217)
                      +.+|+|+|||+|.++..++.                .+..+|..-|+..+.....-+.+....           .. .+-
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~-~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG-NRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CC-CBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccC-CCc
Confidence            47899999999998877632                145678888888776655444432210           00 011


Q ss_pred             EEEeccccc---ccCCCCceeEEEecccccccCChhhhhc
Q 027913          179 KFLQAVGEA---IPVSDASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       179 ~~~~~d~~~---l~~~~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      .|+.+....   -.+++++||+|+++.+|||+.+....|.
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~  171 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVT  171 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGG
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhh
Confidence            244444333   2478999999999999999997665553

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.12  E-value=3.5e-06  Score=69.56  Aligned_cols=71  Identities=14%  Similarity=0.151  Sum_probs=55.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.++||+||++|.++..+++. +..|++||+.+ |-....    .  .  ++|++++.|...+..+.+.||+|+|-.+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~-l~~~l~----~--~--~~V~~~~~d~~~~~~~~~~~D~vvsDm~  279 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGP-MAQSLM----D--T--GQVTWLREDGFKFRPTRSNISWMVCDMV  279 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSC-CCHHHH----T--T--TCEEEECSCTTTCCCCSSCEEEEEECCS
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhh-cChhhc----c--C--CCeEEEeCccccccCCCCCcCEEEEcCC
Confidence            58999999999999999998854 67899999864 222211    1  1  5899999999888767788999998655


Q ss_pred             c
Q 027913          204 L  204 (217)
Q Consensus       204 l  204 (217)
                      .
T Consensus       280 ~  280 (375)
T 4auk_A          280 E  280 (375)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.01  E-value=3e-06  Score=70.04  Aligned_cols=89  Identities=11%  Similarity=0.162  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-----------------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-----------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA  187 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  187 (217)
                      ...+|+|+||++|.++..+...                 +..+|+..|+..+.....-+.+.... ...+..|+.+....
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGS  129 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESC
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchh
Confidence            3467999999999887665543                 23589999999998888877664311 00133566666555


Q ss_pred             ---ccCCCCceeEEEecccccccCChhhhh
Q 027913          188 ---IPVSDASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       188 ---l~~~~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                         -.++++++|+|+++++|||+.+....|
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l  159 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGI  159 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCC
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhh
Confidence               358999999999999999998765443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.85  E-value=1.6e-05  Score=71.70  Aligned_cols=78  Identities=13%  Similarity=0.010  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC----CCeEEEecCCHHHHHHH--HHHHHH----cCCCCCCeEEEeccccccc-CCCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT----DVQVLGVDPNRKMEKYA--QTAAVA----AGLPLTNFKFLQAVGEAIP-VSDA  193 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~l~~a--~~~~~~----~~~~~~~v~~~~~d~~~l~-~~~~  193 (217)
                      ++.+|||.|||+|.++..+++..    ..+++|+|+++.+++.|  +.++..    .++  ....+...|+.... ...+
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi--~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN--NAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT--BCCEEECCCGGGCCGGGGT
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC--CcceEEecchhcccccccC
Confidence            47799999999999998887643    25799999999999999  443322    222  23355566665532 3457


Q ss_pred             ceeEEEecccc
Q 027913          194 SVDAVVGTLVL  204 (217)
Q Consensus       194 sfD~V~~~~~l  204 (217)
                      .||+|+++--+
T Consensus       399 kFDVVIgNPPY  409 (878)
T 3s1s_A          399 NVSVVVMNPPY  409 (878)
T ss_dssp             TEEEEEECCBC
T ss_pred             CCCEEEECCCc
Confidence            89999997655

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.84  E-value=8.1e-06  Score=64.55  Aligned_cols=78  Identities=17%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||||||+|.++..++... ...++|+|+..++....... ...+   .++..+..+++...++++.||+|++-.
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~DlVlsD~  148 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG---WNIITFKDKTDIHRLEPVKCDTLLCDI  148 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT---GGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC---CCeEEEeccceehhcCCCCccEEEecC
Confidence            577799999999999999887643 34688888874431000000 0001   145666777666667788999999987


Q ss_pred             ccc
Q 027913          203 VLC  205 (217)
Q Consensus       203 ~l~  205 (217)
                      +.+
T Consensus       149 apn  151 (277)
T 3evf_A          149 GES  151 (277)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            665

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.81  E-value=8.4e-05  Score=59.39  Aligned_cols=79  Identities=14%  Similarity=0.063  Sum_probs=61.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC------CCCeEEEecCCHH--------------------------HHHHHHHHHHHc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD------TDVQVLGVDPNRK--------------------------MEKYAQTAAVAA  171 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~--------------------------~l~~a~~~~~~~  171 (217)
                      ..++.|||+|+..|..+..++..      .+.+++++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            36889999999999988777641      3678999996421                          467789999998


Q ss_pred             CCCCCCeEEEeccccc-cc-CCCCceeEEEecc
Q 027913          172 GLPLTNFKFLQAVGEA-IP-VSDASVDAVVGTL  202 (217)
Q Consensus       172 ~~~~~~v~~~~~d~~~-l~-~~~~sfD~V~~~~  202 (217)
                      ++..++++++.+|+.+ +| +++++||+|+.=.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa  217 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG  217 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC
Confidence            8743689999999865 34 4457899998644

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.74  E-value=1.5e-05  Score=63.18  Aligned_cols=84  Identities=12%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      +.++.. .++.+|||||||.|.++.++++. +...++|+|+...+...+... ...+   .++..+..+++...++.+.+
T Consensus        82 i~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g---~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           82 MEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG---WNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT---GGGEEEECSCCGGGSCCCCC
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC---CceEEeeCCcchhhcCCCCc
Confidence            344433 57779999999999999988753 345789999986532222110 0012   13344444333334567899


Q ss_pred             eEEEeccccc
Q 027913          196 DAVVGTLVLC  205 (217)
Q Consensus       196 D~V~~~~~l~  205 (217)
                      |+|+|-.+..
T Consensus       158 DvVLSDmApn  167 (282)
T 3gcz_A          158 DTLLCDIGES  167 (282)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEecCccC
Confidence            9999977765

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.69  E-value=9.6e-05  Score=61.11  Aligned_cols=77  Identities=10%  Similarity=-0.038  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCC----CCCeEEEeccccccc-CCCCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLP----LTNFKFLQAVGEAIP-VSDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~v~~~~~d~~~l~-~~~~sfD~  197 (217)
                      .++.+|||+.+|.|.-+..++.. .+..++++|+++.-++..++++...+..    ..++.+...|...++ +..+.||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            48889999999999988888763 3347999999999999999999877642    147899999998875 45678999


Q ss_pred             EEe
Q 027913          198 VVG  200 (217)
Q Consensus       198 V~~  200 (217)
                      |++
T Consensus       227 VLl  229 (359)
T 4fzv_A          227 VLV  229 (359)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.68  E-value=7.7e-05  Score=58.90  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAG  172 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~  172 (217)
                      .+.+.+++....++..|||..||+|..+.... ..+.+++|+|+++..++.+++++...+
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~-~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            34555565555688999999999999988776 567899999999999999999987544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.65  E-value=6e-05  Score=61.37  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--C
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--V  190 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~  190 (217)
                      ..+++.+. .++..++|..+|.|.++..+++.  +..+|+|+|.++.+++.++ ++  .+   .++.++.++...+.  +
T Consensus        47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~~---~Rv~lv~~nF~~l~~~L  120 (347)
T 3tka_A           47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--DD---PRFSIIHGPFSALGEYV  120 (347)
T ss_dssp             HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--CC---TTEEEEESCGGGHHHHH
T ss_pred             HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--cC---CcEEEEeCCHHHHHHHH
Confidence            34555555 57889999999999999999864  4568999999999999985 33  11   68999999998874  1


Q ss_pred             C----CCceeEEEeccccc--ccCChhh
Q 027913          191 S----DASVDAVVGTLVLC--SVKDVDM  212 (217)
Q Consensus       191 ~----~~sfD~V~~~~~l~--~~~d~~~  212 (217)
                      +    .+++|.|+....+.  .+.++++
T Consensus       121 ~~~g~~~~vDgILfDLGVSS~QlD~~eR  148 (347)
T 3tka_A          121 AERDLIGKIDGILLDLGVSSPQLDDAER  148 (347)
T ss_dssp             HHTTCTTCEEEEEEECSCCHHHHHCGGG
T ss_pred             HhcCCCCcccEEEECCccCHHHhcCCCC
Confidence            1    13699999876554  3445544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.55  E-value=8.1e-05  Score=58.77  Aligned_cols=77  Identities=18%  Similarity=0.105  Sum_probs=51.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh--------CC-----CCeEEEecCCH---HHHH-----------HHHHHHHHc------
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA--------DT-----DVQVLGVDPNR---KMEK-----------YAQTAAVAA------  171 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~v~gvD~s~---~~l~-----------~a~~~~~~~------  171 (217)
                      ++.+|||||+|+|..+..+++        .+     ..+++++|..+   +++.           .+++.+...      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            557999999999998876543        23     24899999876   5554           455555431      


Q ss_pred             ----CC--CCCCeEEEeccccc-cc-CCC---CceeEEEec
Q 027913          172 ----GL--PLTNFKFLQAVGEA-IP-VSD---ASVDAVVGT  201 (217)
Q Consensus       172 ----~~--~~~~v~~~~~d~~~-l~-~~~---~sfD~V~~~  201 (217)
                          .+  ...+++++.+|+.+ ++ +++   ..||+|+.-
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD  180 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD  180 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC
Confidence                01  11367899999877 44 222   279999973

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.54  E-value=7.1e-05  Score=62.04  Aligned_cols=78  Identities=17%  Similarity=0.045  Sum_probs=60.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc---CCC---CCCeEEEeccccccc----CCCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA---GLP---LTNFKFLQAVGEAIP----VSDA  193 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~---~~~v~~~~~d~~~l~----~~~~  193 (217)
                      .++++||=||.|.|..++.+.+.+..+++.||+++.+++.+++.+...   .+.   .++++++.+|+...-    -..+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            467899999999999999999877789999999999999999875321   111   135899999986542    2346


Q ss_pred             ceeEEEec
Q 027913          194 SVDAVVGT  201 (217)
Q Consensus       194 sfD~V~~~  201 (217)
                      +||+|+.-
T Consensus       284 ~yDvIIvD  291 (381)
T 3c6k_A          284 EFDYVIND  291 (381)
T ss_dssp             CEEEEEEE
T ss_pred             ceeEEEEC
Confidence            89999863

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.53  E-value=2.5e-05  Score=60.22  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+||||||++|.++.+.+...+ ..|+|+|+-..-.+. -......||  ..++|..+ |+..++  ...+|+|+|-
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw--n~v~fk~gvDv~~~~--~~~~DtllcD  151 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW--NIVKLMSGKDVFYLP--PEKCDTLLCD  151 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT--TSEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc--CceEEEeccceeecC--CccccEEEEe
Confidence            5788999999999999998886554 479999997652210 000112355  57999999 987664  3679999986


Q ss_pred             ccc
Q 027913          202 LVL  204 (217)
Q Consensus       202 ~~l  204 (217)
                      ..-
T Consensus       152 Ige  154 (267)
T 3p8z_A          152 IGE  154 (267)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            544

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.53  E-value=0.00026  Score=58.34  Aligned_cols=59  Identities=14%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ++..|||||.|.|.++..|++. ...+|+++|+.+.++...++.. .  .  ++++++.+|+..+
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~--~~l~ii~~D~l~~  117 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--G--SPLQILKRDPYDW  117 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--T--SSCEEECSCTTCH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--C--CCEEEEECCccch
Confidence            3578999999999999999863 3568999999999999998876 2  1  5899999999665

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.42  E-value=0.00045  Score=60.11  Aligned_cols=89  Identities=15%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh----CC----------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCe
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA----DT----------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF  178 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~----~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  178 (217)
                      ..+.+++.+. .++.+|+|-+||+|.++....+    ..          ...++|+|+++.+...|+-++.-.|..  ..
T Consensus       205 Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~--~~  282 (530)
T 3ufb_A          205 VVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE--YP  282 (530)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS--CC
T ss_pred             HHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc--cc
Confidence            3334444444 4667999999999998765543    11          246999999999999999888777763  44


Q ss_pred             EEEecccccccC----CCCceeEEEecccc
Q 027913          179 KFLQAVGEAIPV----SDASVDAVVGTLVL  204 (217)
Q Consensus       179 ~~~~~d~~~l~~----~~~sfD~V~~~~~l  204 (217)
                      .+..+|....|+    +...||+|+++--+
T Consensus       283 ~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf  312 (530)
T 3ufb_A          283 RIDPENSLRFPLREMGDKDRVDVILTNPPF  312 (530)
T ss_dssp             EEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred             cccccccccCchhhhcccccceEEEecCCC
Confidence            677777665442    23579999997655

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.24  E-value=0.00049  Score=54.80  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=54.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCC-eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sfD~V~~~  201 (217)
                      .++..||||||++|.++.+.+...+. .|+|+|+-..-.+.= ....+.++  .-|.|... |+..++-  ..+|+|+|-
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w--~lV~~~~~~Dv~~l~~--~~~D~ivcD  167 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW--NIVTMKSGVDVFYRPS--ECCDTLLCD  167 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG--GGEEEECSCCTTSSCC--CCCSEEEEC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC--cceEEEeccCHhhCCC--CCCCEEEEE
Confidence            57789999999999999988765554 699999976511000 00012233  35788887 8877753  569999986


Q ss_pred             ccccccCCh
Q 027913          202 LVLCSVKDV  210 (217)
Q Consensus       202 ~~l~~~~d~  210 (217)
                      .. +.-+++
T Consensus       168 ig-eSs~~~  175 (321)
T 3lkz_A          168 IG-ESSSSA  175 (321)
T ss_dssp             CC-CCCSCH
T ss_pred             Cc-cCCCCh
Confidence            65 554443

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.98  E-value=0.0021  Score=51.27  Aligned_cols=78  Identities=17%  Similarity=0.166  Sum_probs=47.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+||||||++|.++..+++.. ...|+|+|+...+...... ....+   .++.....++....+..+.+|+|++-.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~---~~iv~~~~~~di~~l~~~~~DlVlsD~  155 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG---WNIVKFKDKSNVFTMPTEPSDTLLCDI  155 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT---GGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC---CceEEeecCceeeecCCCCcCEEeecC
Confidence            578899999999999999998643 3478999997542110000 00001   122333333333334567899999976


Q ss_pred             ccc
Q 027913          203 VLC  205 (217)
Q Consensus       203 ~l~  205 (217)
                      +..
T Consensus       156 APn  158 (300)
T 3eld_A          156 GES  158 (300)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            655

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.79  E-value=0.0078  Score=50.09  Aligned_cols=94  Identities=14%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCC
Q 027913          107 YEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN  177 (217)
Q Consensus       107 ~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~  177 (217)
                      |.+.+..+..+..+.+. +.+..|+|+|+|.|.++..+.+.        ...+++.||+|+...+.-++.+...    .+
T Consensus        61 FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~----~~  136 (387)
T 1zkd_A           61 FGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI----RN  136 (387)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC----SS
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC----CC
Confidence            33334444444445544 34457999999999997766531        1238999999999877666554332    25


Q ss_pred             eEEEecccccccCCCCceeEEEecccccccC
Q 027913          178 FKFLQAVGEAIPVSDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       178 v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~  208 (217)
                      +.|.. +++++|-  + .=+|+++.+|.-+|
T Consensus       137 v~W~~-~l~~lp~--~-~~~viANE~fDAlP  163 (387)
T 1zkd_A          137 IHWHD-SFEDVPE--G-PAVILANEYFDVLP  163 (387)
T ss_dssp             EEEES-SGGGSCC--S-SEEEEEESSGGGSC
T ss_pred             eEEeC-ChhhcCC--C-CeEEEeccccccCc
Confidence            66653 3455542  2 44777777776665

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.68  E-value=0.001  Score=52.04  Aligned_cols=70  Identities=14%  Similarity=0.033  Sum_probs=42.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-----CeEEEecC--CHHHHHHHHHHHHHcCCCCCCeEEEec-ccccccCCCCce
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-----VQVLGVDP--NRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAIPVSDASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-----~~v~gvD~--s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l~~~~~sf  195 (217)
                      .++.+|||+||+.|.++.+.++..+     ..++|+|+  .|-    ..   ...|+  .-+.|.++ |+..+  +...+
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~----~~---~~~Gv--~~i~~~~G~Df~~~--~~~~~  140 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM----LM---QSYGW--NIVTMKSGVDVFYK--PSEIS  140 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC----CC---CSTTG--GGEEEECSCCGGGS--CCCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC----cc---cCCCc--eEEEeeccCCccCC--CCCCC
Confidence            5899999999999999999886422     23455552  110    00   00111  11244547 98875  34679


Q ss_pred             eEEEecccc
Q 027913          196 DAVVGTLVL  204 (217)
Q Consensus       196 D~V~~~~~l  204 (217)
                      |+|+|=.+-
T Consensus       141 DvVLSDMAP  149 (269)
T 2px2_A          141 DTLLCDIGE  149 (269)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEeCCCC
Confidence            999986544

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.52  E-value=0.00073  Score=68.47  Aligned_cols=87  Identities=21%  Similarity=0.106  Sum_probs=49.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~  197 (217)
                      +..+|||||.|+|..+..+.+..      ..+++..|+|+...+.++++++...     +.....|.... ++..++||+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d-----i~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH-----VTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT-----EEEECCCSSCCCC-----CCE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc-----cccccccccccccCCCCceeE
Confidence            56799999999998766654321      2379999999999888888875532     33333343332 345568999


Q ss_pred             EEecccccccCChhhhhcC
Q 027913          198 VVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       198 V~~~~~l~~~~d~~~~L~e  216 (217)
                      |++.+++|-.++...+|++
T Consensus      1315 via~~vl~~t~~~~~~l~~ 1333 (2512)
T 2vz8_A         1315 LVCNCALATLGDPAVAVGN 1333 (2512)
T ss_dssp             EEEECC-------------
T ss_pred             EEEcccccccccHHHHHHH
Confidence            9999999977777766654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.43  E-value=0.0062  Score=50.61  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=53.8

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---C-----CCCceeEE
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---V-----SDASVDAV  198 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~-----~~~sfD~V  198 (217)
                      .++||+-||.|.+...+.+.....++++|+++..++..+.++       .+..++.+|+.++.   +     ....+|+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            589999999999988886544445789999999988888764       35678899998873   1     34679999


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      +...
T Consensus        76 ~ggp   79 (376)
T 3g7u_A           76 IGGP   79 (376)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            8743

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.42  E-value=0.0018  Score=53.17  Aligned_cols=70  Identities=19%  Similarity=0.156  Sum_probs=53.3

Q ss_pred             CCeEEEECCcCCcchHhhhhCC--CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEe
Q 027913          126 AKKVLEIGIGTGPNLKYYAADT--DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~  200 (217)
                      +.+|||+-||.|.+...+.+..  ...++++|+++.+++..+.++       .+..++.+|+..+.   ++...+|+|+.
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            4589999999999988887543  236999999999999998886       23457889988874   22225899987


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        75 gp   76 (343)
T 1g55_A           75 SP   76 (343)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=96.30  E-value=0.032  Score=46.98  Aligned_cols=90  Identities=23%  Similarity=0.298  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh---C---CCCeEEEecCCHHHHHHHHHHHHHcC--CCCCCeEE
Q 027913          109 AEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---D---TDVQVLGVDPNRKMEKYAQTAAVAAG--LPLTNFKF  180 (217)
Q Consensus       109 ~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~---~---~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~v~~  180 (217)
                      +.+..+..++.+..  .+..|+|+|+|.|.++..+.+   .   ...+++.||+|+.+.+.-++++....  +. .++.|
T Consensus       123 e~la~~~~~~~~~~--g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~-~~v~W  199 (432)
T 4f3n_A          123 QTLARPVAQALDAS--GTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLA-ARVRW  199 (432)
T ss_dssp             HHHHHHHHHHHHHH--TCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTG-GGEEE
T ss_pred             HHHHHHHHHHHHhc--CCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccC-CCcee
Confidence            33444444455554  357999999999998766654   1   12479999999998888887776431  11 35666


Q ss_pred             EecccccccCCCCcee-EEEecccccccC
Q 027913          181 LQAVGEAIPVSDASVD-AVVGTLVLCSVK  208 (217)
Q Consensus       181 ~~~d~~~l~~~~~sfD-~V~~~~~l~~~~  208 (217)
                      ..    .+|  + .|. +|+++.+|.-+|
T Consensus       200 ~~----~lP--~-~~~g~iiANE~fDAlP  221 (432)
T 4f3n_A          200 LD----ALP--E-RFEGVVVGNEVLDAMP  221 (432)
T ss_dssp             ES----SCC--S-CEEEEEEEESCGGGSC
T ss_pred             cc----cCC--c-cCceEEEeehhhccCc
Confidence            43    233  2 244 666666766664

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.16  E-value=0.067  Score=43.59  Aligned_cols=85  Identities=11%  Similarity=0.173  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCC-------------------CCCCeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGL-------------------PLTNFKFLQA  183 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------------~~~~v~~~~~  183 (217)
                      .+...|+.+|||.......+.. .++..++-||. |++++.-++.+.+.+.                   ...+..++..
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            3667899999999999888874 35678888888 7778777777765410                   1257899999


Q ss_pred             ccccccC---------CCCceeEEEecccccccCC
Q 027913          184 VGEAIPV---------SDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       184 d~~~l~~---------~~~sfD~V~~~~~l~~~~d  209 (217)
                      |+.+..+         ..+...++++-.++.+++.
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~  209 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHN  209 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCH
Confidence            9987432         2356789999999999964

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.97  E-value=0.0066  Score=49.31  Aligned_cols=73  Identities=7%  Similarity=-0.024  Sum_probs=55.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      .+.+.+++....++..|||--||+|..+.... ..+.+++|+|+++..++.+++++...+.   ....+..|+.+++
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~-~~gr~~ig~e~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~i~  312 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLDNNI---SEEKITDIYNRIL  312 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSCSCS---CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHhccc---chHHHHHHHHHHH
Confidence            34555565555688999999999999887765 5688999999999999999999865553   3445555655554

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.75  E-value=0.023  Score=47.68  Aligned_cols=61  Identities=13%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             CCCCeEEEECCcCCcchHhhh-h-CC-CCeEEEecCCHHHHHHHHHHHHH---cCCCCCCeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYA-A-DT-DVQVLGVDPNRKMEKYAQTAAVA---AGLPLTNFKFLQAVG  185 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~-~-~~-~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~v~~~~~d~  185 (217)
                      .++..++|||++.|.++..++ + .+ ..+|+++|+++...+..++++..   .+.. .+++++..-+
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~-~~v~~~~~al  291 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFA-SRITVHGCGA  291 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTG-GGEEEECSEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCC-CCEEEEEeEE
Confidence            367899999999999998877 3 33 36899999999999999999876   1221 3666665433

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.69  E-value=0.011  Score=48.06  Aligned_cols=59  Identities=15%  Similarity=0.135  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCH---HHHHHHHHHHHHcC
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNR---KMEKYAQTAAVAAG  172 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---~~l~~a~~~~~~~~  172 (217)
                      .+.+.++.....++..|||-=||+|..+.... ..+.+++|+|+++   ..++.+++++.+.+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~-~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHH-HcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            44555666555688999999999999887765 5578999999999   99999999886554

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=95.50  E-value=0.04  Score=44.80  Aligned_cols=69  Identities=6%  Similarity=-0.066  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~  202 (217)
                      .+.++||+.||.|.+...+.+.....++++|+++..++..+.++..       ..  .+|+..+... -..+|+|+...
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~-------~~--~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE-------KP--EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC-------CC--BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC-------CC--cCCHHHcCHhhCCCCCEEEECC
Confidence            4578999999999998888755445688999999999998888621       11  6788776411 13589998753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=94.96  E-value=0.0081  Score=47.72  Aligned_cols=76  Identities=4%  Similarity=-0.122  Sum_probs=59.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc-cc---CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA-IP---VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~-l~---~~~~sfD~V~~  200 (217)
                      .+..+||+=+|+|.++..+.+ .+.+++.+|.++..++..++++...    .+++++..|+.. +.   -+...||+|++
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~~----~~~~V~~~D~~~~L~~l~~~~~~fdLVfi  165 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHFN----KKVYVNHTDGVSKLNALLPPPEKRGLIFI  165 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCTT----SCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCcC----CcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence            567799999999999999886 5589999999999999999887541    589999999644 22   23357999997


Q ss_pred             ccccc
Q 027913          201 TLVLC  205 (217)
Q Consensus       201 ~~~l~  205 (217)
                      ==-++
T Consensus       166 DPPYe  170 (283)
T 2oo3_A          166 DPSYE  170 (283)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            44333

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.73  E-value=0.049  Score=44.27  Aligned_cols=70  Identities=14%  Similarity=0.048  Sum_probs=51.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCC--CCeE-EEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADT--DVQV-LGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAV  198 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v-~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V  198 (217)
                      ...+++|+-||.|.+...+.+..  ..-+ .++|+++...+..+.++.       .. ++.+|+.++.   ++...+|+|
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~-------~~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFK-------EE-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHC-------CC-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCC-------CC-cccCChhhcCHHHhccCCCCEE
Confidence            45689999999999988886543  2346 799999999988888762       22 5677887764   232368999


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      +...
T Consensus        81 ~ggp   84 (327)
T 3qv2_A           81 FMSP   84 (327)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            8754

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.70  E-value=0.053  Score=43.30  Aligned_cols=64  Identities=13%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             CCCCeEEEECC------cCCcch-HhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          124 GKAKKVLEIGI------GTGPNL-KYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGc------G~G~~~-~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +.+.+|||+|+      ..|... +.+. ..+..++++|+.+-.           ..  .. .++++|...+.. .+.||
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~VLr~~~-p~g~~VVavDL~~~~-----------sd--a~-~~IqGD~~~~~~-~~k~D  171 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTAVLRQWL-PTGTLLVDSDLNDFV-----------SD--AD-STLIGDCATVHT-ANKWD  171 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHS-CTTCEEEEEESSCCB-----------CS--SS-EEEESCGGGEEE-SSCEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHHHHHHhC-CCCcEEEEeeCcccc-----------cC--CC-eEEEcccccccc-CCCCC
Confidence            67899999996      555532 2221 234589999998641           01  12 469999876543 47899


Q ss_pred             EEEeccc
Q 027913          197 AVVGTLV  203 (217)
Q Consensus       197 ~V~~~~~  203 (217)
                      +|++=.+
T Consensus       172 LVISDMA  178 (344)
T 3r24_A          172 LIISDMY  178 (344)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.40  E-value=1.2  Score=35.73  Aligned_cols=83  Identities=13%  Similarity=0.124  Sum_probs=61.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC-CCCCeEEEeccccccc---------CCCCc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL-PLTNFKFLQAVGEAIP---------VSDAS  194 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~v~~~~~d~~~l~---------~~~~s  194 (217)
                      ....|++||||-=.....+....+..++=|| -|.+++..++.+.+.+. +..+..++.+|+.+ .         +....
T Consensus       102 g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~  179 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSA  179 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTS
T ss_pred             CCCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCC
Confidence            3457999999988877666522346899999 58999999988876432 23678899999875 2         22234


Q ss_pred             eeEEEecccccccCC
Q 027913          195 VDAVVGTLVLCSVKD  209 (217)
Q Consensus       195 fD~V~~~~~l~~~~d  209 (217)
                      -=++++-.+++|+++
T Consensus       180 Pt~~i~Egvl~Yl~~  194 (310)
T 2uyo_A          180 RTAWLAEGLLMYLPA  194 (310)
T ss_dssp             CEEEEECSCGGGSCH
T ss_pred             CEEEEEechHhhCCH
Confidence            567888889999975

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.36  E-value=0.044  Score=44.69  Aligned_cols=70  Identities=17%  Similarity=0.141  Sum_probs=51.1

Q ss_pred             CCeEEEECCcCCcchHhhhhCCC--CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEe
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTD--VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~  200 (217)
                      +.+++|+-||.|.+...+.+...  .-+.++|+++...+..+.++       +...++..|+.++.   ++...+|+|+.
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~-------~~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNF-------PETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhC-------CCCceeccccccCCHHHhccCCCCEEEe
Confidence            34799999999998887764322  45889999999888888775       23457788888774   23336899986


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        76 gp   77 (333)
T 4h0n_A           76 SP   77 (333)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.82  E-value=0.19  Score=40.19  Aligned_cols=70  Identities=13%  Similarity=0.075  Sum_probs=51.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCe---EEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CC-CCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQ---VLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VS-DASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~-~~sfD~  197 (217)
                      .+.+++|+=||.|.+...+.+. |.+   ++++|+++..++..+.+.       ....++.+|+.++.   ++ .+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-------~~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-------QGKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-------TTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-------CCCceeCCChHHccHHHhcccCCcCE
Confidence            5668999999999988877643 443   599999999887777664       23467889998874   21 146999


Q ss_pred             EEecc
Q 027913          198 VVGTL  202 (217)
Q Consensus       198 V~~~~  202 (217)
                      |+...
T Consensus        87 l~ggp   91 (295)
T 2qrv_A           87 VIGGS   91 (295)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            98754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.41  E-value=0.14  Score=35.73  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             CCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          126 AKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ..+|+=+|+|. |..+...+...+..|+++|.+++.++.+++    .     .+.++.+|..+..    ..-..+|+|+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~-----g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R-----GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T-----TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c-----CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            35788888864 433333333567899999999998877664    2     3468888876532    12246888875


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus        78 ~   78 (140)
T 3fwz_A           78 T   78 (140)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.97  E-value=0.36  Score=33.44  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEE
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V  198 (217)
                      .++|+=+|+|.  .+..+++   ..+.+|+++|.+++.++.+++.         .+.++.+|..+..    ..-..+|+|
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~---------~~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE---------GFDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---------TCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC---------CCcEEECCCCCHHHHHhCCcccCCEE
Confidence            45789999853  4444433   4578999999999987766542         3467888876532    223468888


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      +...
T Consensus        75 i~~~   78 (141)
T 3llv_A           75 LITG   78 (141)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=91.61  E-value=0.39  Score=38.58  Aligned_cols=67  Identities=10%  Similarity=0.079  Sum_probs=49.8

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEec
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGT  201 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~  201 (217)
                      .+|||+=||.|.+...+.+....-+.++|+++...+..+.+.        .-.++.+|+.++... -..+|+|+..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~--------~~~~~~~DI~~i~~~~~~~~D~l~gg   68 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------SAKLIKGDISKISSDEFPKCDGIIGG   68 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC--------CSEEEESCGGGCCGGGSCCCSEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------CCCcccCChhhCCHhhCCcccEEEec
Confidence            479999999999888776544446789999999888877764        126788999887521 1368988764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.44  E-value=0.33  Score=39.77  Aligned_cols=44  Identities=18%  Similarity=0.154  Sum_probs=35.8

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||-+|+|. |..+..+++..+. .|+++|.+++.++.+++.
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            5788999999875 7777777776666 699999999988888654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.68  E-value=0.41  Score=38.77  Aligned_cols=68  Identities=22%  Similarity=0.281  Sum_probs=47.5

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++    .|..    .++ .+.+.+  .. .+|+|+...
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----~v~-~~~~~~--~~-~~D~vid~~  242 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK----HFY-TDPKQC--KE-ELDFIISTI  242 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS----EEE-SSGGGC--CS-CEEEEEECC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC----eec-CCHHHH--hc-CCCEEEECC
Confidence            5788999999875 677777777778899999999988887765    3431    222 343333  22 799998644


Q ss_pred             c
Q 027913          203 V  203 (217)
Q Consensus       203 ~  203 (217)
                      .
T Consensus       243 g  243 (348)
T 3two_A          243 P  243 (348)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.48  E-value=0.79  Score=35.68  Aligned_cols=80  Identities=14%  Similarity=0.026  Sum_probs=59.4

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++.+|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+   .++.++..|+.+..          -.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLA-AAGARVILNDIRATLLAESVDTLTRKG---YDAHGVAFDVTDELAIEAAFSKLDAE   83 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTT---CCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            67888888877773   234444 567899999999999988888887777   47889999986631          12


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                      -+..|+++.+..+....
T Consensus        84 ~G~iDiLVNNAG~~~~~  100 (255)
T 4g81_D           84 GIHVDILINNAGIQYRK  100 (255)
T ss_dssp             TCCCCEEEECCCCCCCC
T ss_pred             CCCCcEEEECCCCCCCC
Confidence            25799999988765543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=89.98  E-value=1.2  Score=36.10  Aligned_cols=44  Identities=20%  Similarity=0.166  Sum_probs=36.0

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|. |..+..+++..+. +|+++|.+++.++.+++.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            5788999999875 6777778777777 899999999988877764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.32  E-value=1.3  Score=34.27  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=49.3

Q ss_pred             CeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          127 KKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++||=.|+  |.++..+++   ..+.+|++++.++........         .+++++.+|+.++.  -..+|+|+....
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH---------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh---------CCCeEEEecccccc--cCCCCEEEECCC
Confidence            57999994  877666654   457899999998865433322         36789999998876  457899998776


Q ss_pred             cccc
Q 027913          204 LCSV  207 (217)
Q Consensus       204 l~~~  207 (217)
                      ....
T Consensus        73 ~~~~   76 (286)
T 3ius_A           73 PDSG   76 (286)
T ss_dssp             CBTT
T ss_pred             cccc
Confidence            5443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.84  E-value=1.3  Score=33.30  Aligned_cols=78  Identities=19%  Similarity=0.161  Sum_probs=48.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCe-EEEecccc-cccCCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF-KFLQAVGE-AIPVSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v-~~~~~d~~-~l~~~~~sfD~V~  199 (217)
                      .+++||=.|+. |..+..+++   ..+.+|++++.+++.++....         .++ +++.+|+. .+.-.-+.+|+|+
T Consensus        20 ~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELRE---------RGASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             -CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH---------TTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             CCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh---------CCCceEEEcccHHHHHHHHcCCCEEE
Confidence            67889988754 444444433   457899999999875544332         256 88999986 2211113689999


Q ss_pred             ecccccccCChhh
Q 027913          200 GTLVLCSVKDVDM  212 (217)
Q Consensus       200 ~~~~l~~~~d~~~  212 (217)
                      .+.......+++.
T Consensus        90 ~~ag~~~~~~~~~  102 (236)
T 3e8x_A           90 FAAGSGPHTGADK  102 (236)
T ss_dssp             ECCCCCTTSCHHH
T ss_pred             ECCCCCCCCCccc
Confidence            8877655444443

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.62  E-value=0.89  Score=34.96  Aligned_cols=78  Identities=15%  Similarity=0.053  Sum_probs=56.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~  192 (217)
                      .++++|=.|++.|.   ++..|+ ..|.+|+++|.+++.++...+.+...+   .++.++.+|+.+..     +    ..
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFA-AEGFTVFAGRRNGEKLAPLVAEIEAAG---GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHH-HTTCEEEEEESSGGGGHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            56788888887662   334444 457799999999988888887777665   57899999987642     1    01


Q ss_pred             CceeEEEecccccc
Q 027913          193 ASVDAVVGTLVLCS  206 (217)
Q Consensus       193 ~sfD~V~~~~~l~~  206 (217)
                      +..|+++.+..+..
T Consensus        82 g~id~lv~nAg~~~   95 (252)
T 3h7a_A           82 APLEVTIFNVGANV   95 (252)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCceEEEECCCcCC
Confidence            57899998876544

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.61  E-value=0.35  Score=40.05  Aligned_cols=43  Identities=21%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |.++..+++..+. +|+++|.+++.++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            5788999999876 7777788776666 89999999998877764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.60  E-value=1.4  Score=34.23  Aligned_cols=77  Identities=18%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++.+|=-|.+.|.   .+..|+ ..|.+|+.+|.+++.++...+.+++.+   .++.++.+|+.+..          -.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la-~~Ga~Vv~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFA-LNDSIVVAVELLEDRLNQIVQELRGMG---KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            78889988988773   234444 457899999999999999888888777   57899999997642          01


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+++.+..+.
T Consensus        82 ~G~iDiLVNNAGi~   95 (254)
T 4fn4_A           82 YSRIDVLCNNAGIM   95 (254)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             cCCCCEEEECCccc
Confidence            15799999887543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.26  E-value=2.2  Score=32.33  Aligned_cols=78  Identities=15%  Similarity=0.144  Sum_probs=55.3

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++++|=.|++.|.   ++..|+ ..|.+|++++.+++.++...+.+.+.+   .++.++..|+.+..          -.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~-~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALA-SKGATVVGTATSQASAEKFENSMKEKG---FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46778877866552   234444 457899999999998888887777666   47899999987642          11


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      .+..|+++.+..+..
T Consensus        80 ~~~id~li~~Ag~~~   94 (247)
T 3lyl_A           80 NLAIDILVNNAGITR   94 (247)
T ss_dssp             TCCCSEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            246899998776543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=87.91  E-value=0.55  Score=40.17  Aligned_cols=60  Identities=10%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             CCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP  189 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~  189 (217)
                      ..+++|+=||.|.+...+.+....-++++|+++...+..+.+....    +...++.+|+.++.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~----p~~~~~~~DI~~i~  147 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD----PATHHFNEDIRDIT  147 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC----TTTCEEESCTHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC----CCcceeccchhhhh
Confidence            3589999999999988886443335899999998887777664110    23456778887764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.43  E-value=0.63  Score=37.50  Aligned_cols=43  Identities=26%  Similarity=0.269  Sum_probs=36.1

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            5788999999875 777778887778899999999998887765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.35  E-value=2.7  Score=28.43  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=40.2

Q ss_pred             CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEE
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAV  198 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V  198 (217)
                      +++|+=+|+|  ..+..+++   ..+.+|+++|.+++.++..++.   .     .+.++.+|.....    ..-..+|+|
T Consensus         4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~-----~~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I-----DALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C-----SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c-----CcEEEEcCCCCHHHHHHcCcccCCEE
Confidence            4578888875  44433332   4567899999999876655432   1     2356667654321    112468988


Q ss_pred             Eecc
Q 027913          199 VGTL  202 (217)
Q Consensus       199 ~~~~  202 (217)
                      +...
T Consensus        74 i~~~   77 (140)
T 1lss_A           74 IAVT   77 (140)
T ss_dssp             EECC
T ss_pred             EEee
Confidence            8753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.29  E-value=0.72  Score=33.48  Aligned_cols=68  Identities=15%  Similarity=0.200  Sum_probs=41.5

Q ss_pred             CCCeEEEECCcC-CcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----C-CCCceeE
Q 027913          125 KAKKVLEIGIGT-GPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----V-SDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~-~~~sfD~  197 (217)
                      .+.+|+=+|+|. |..+...+... +..|+++|.+++.++.+++    .+     +.++.+|..+..    . .-..+|+
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g-----~~~~~gd~~~~~~l~~~~~~~~ad~  108 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG-----RNVISGDATDPDFWERILDTGHVKL  108 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT-----CCEEECCTTCHHHHHTBCSCCCCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC-----CCEEEcCCCCHHHHHhccCCCCCCE
Confidence            356899998763 33222222345 7789999999987766553    23     346667764421    1 2346898


Q ss_pred             EEec
Q 027913          198 VVGT  201 (217)
Q Consensus       198 V~~~  201 (217)
                      |+..
T Consensus       109 vi~~  112 (183)
T 3c85_A          109 VLLA  112 (183)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=87.27  E-value=2.2  Score=34.87  Aligned_cols=44  Identities=16%  Similarity=0.088  Sum_probs=35.4

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|. |..+..+++..|. .|+++|.+++.++.+++.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            5788999999864 6677777776776 899999999988877763

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.19  E-value=2.9  Score=33.33  Aligned_cols=81  Identities=11%  Similarity=-0.002  Sum_probs=57.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .+++||=.|++.|.   ++..|+ ..|.+|++++.+++.++.+.+.+...+.. .++.++..|+.+..     +     .
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~-~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLL-NQGCKVAIADIRQDSIDKALATLEAEGSG-PEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCC-CeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            56789988887662   234444 45788999999999888887777665532 37899999987642     1     1


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+|+.+..+...
T Consensus        85 ~g~id~lv~nAg~~~~  100 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLF  100 (319)
T ss_dssp             TCCEEEEEECCCCCCC
T ss_pred             CCCCCEEEECCCcCCC
Confidence            1478999988876443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.97  E-value=0.84  Score=37.07  Aligned_cols=43  Identities=26%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |..+..+++..+. +|+++|.+++.++.+++
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            5788999999875 6777778776677 89999999998877764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=86.87  E-value=2  Score=32.97  Aligned_cols=77  Identities=12%  Similarity=-0.000  Sum_probs=52.6

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.| +...+++   ..|.+|++++.+++.++...+.+...+   .++.++.+|+.+..     +.     
T Consensus         8 ~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            5678888777654 3333332   457889999999987777666665544   46888999987642     11     


Q ss_pred             -CCceeEEEeccccc
Q 027913          192 -DASVDAVVGTLVLC  205 (217)
Q Consensus       192 -~~sfD~V~~~~~l~  205 (217)
                       .+..|+++.+..+.
T Consensus        84 ~~g~id~lv~~Ag~~   98 (260)
T 2ae2_A           84 FHGKLNILVNNAGIV   98 (260)
T ss_dssp             TTTCCCEEEECCCCC
T ss_pred             cCCCCCEEEECCCCC
Confidence             15799999887654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=86.74  E-value=1.5  Score=34.03  Aligned_cols=78  Identities=12%  Similarity=0.016  Sum_probs=55.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+...+   .++.++.+|+.+..     +     .
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLA-VAGARILINGTDPSRVAQTVQEFRNVG---HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEECCSCHHHHHHHHHHHHHTT---CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            67788888876552   233444 457899999999998888887776666   47889999987642     1     1


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+..+..
T Consensus       101 ~g~iD~lv~nAg~~~  115 (271)
T 4ibo_A          101 GIDVDILVNNAGIQF  115 (271)
T ss_dssp             TCCCCEEEECCCCCC
T ss_pred             CCCCCEEEECCCCCC
Confidence            246899998876654

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=86.50  E-value=2.8  Score=30.14  Aligned_cols=41  Identities=15%  Similarity=0.264  Sum_probs=29.5

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecC
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDP  156 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~  156 (217)
                      .........-...|||+|-|+|..-..+.+ -++..++.+|-
T Consensus        31 ~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           31 EHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHhcCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            334455555678899999999987777665 56667777774

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=86.47  E-value=2.3  Score=33.00  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecC-------------CHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDP-------------NRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~-------------s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+++|.             +++.++...+.+...+   .++.++..|+.+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMA-AEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN---RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHH-HcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC---CeEEEEECCCCCH
Confidence            67889988887662   234444 45789999998             6777777766666655   4788999998764


Q ss_pred             c-----CC-----CCceeEEEeccccccc
Q 027913          189 P-----VS-----DASVDAVVGTLVLCSV  207 (217)
Q Consensus       189 ~-----~~-----~~sfD~V~~~~~l~~~  207 (217)
                      .     +.     -+..|+++.+..+...
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~  114 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAP  114 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            2     11     1468999988766543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=86.28  E-value=1.2  Score=37.79  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             CCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          126 AKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      .++|+=+|||. |..+...+...+..|+.+|.+++.++.+.+.+        .+..+.+|.....    ..-...|++++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY--------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS--------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc--------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            45777777762 33332222356789999999999988877653        4678999987653    12246888876


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus        75 ~   75 (461)
T 4g65_A           75 V   75 (461)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=86.24  E-value=2.2  Score=33.09  Aligned_cols=77  Identities=14%  Similarity=0.011  Sum_probs=53.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.| +...+++   ..|.+|++++.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus        20 ~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            5678888887655 3333332   457899999999988777666665554   47889999986642     11     


Q ss_pred             -CCceeEEEeccccc
Q 027913          192 -DASVDAVVGTLVLC  205 (217)
Q Consensus       192 -~~sfD~V~~~~~l~  205 (217)
                       ++..|+++.+....
T Consensus        96 ~~g~id~lv~nAg~~  110 (273)
T 1ae1_A           96 FDGKLNILVNNAGVV  110 (273)
T ss_dssp             TTSCCCEEEECCCCC
T ss_pred             cCCCCcEEEECCCCC
Confidence             15799999887654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=86.22  E-value=0.9  Score=38.01  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             CCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          126 AKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ..+|+=+|+|. |......+...+..|++||.+++.++.+++    .|     +.++.+|..+..    ..-...|+|++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g-----~~vi~GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG-----MKVFYGDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT-----CCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC-----CeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence            45688888753 333333333567899999999999888764    23     357888887642    22346888876


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        75 ~~   76 (413)
T 3l9w_A           75 AI   76 (413)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=85.89  E-value=2.6  Score=32.60  Aligned_cols=78  Identities=18%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCcee
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD  196 (217)
                      .++++|=-|.+.|.   .+..|+ ..|.+|+.+|.+..  +.+.+.+.+.+   .++.++..|+.+..     +..+..|
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la-~~Ga~Vvi~~r~~~--~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLA-AAGAEVVCAARRAP--DETLDIIAKDG---GNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCC--HHHHHHHHHTT---CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHH-HcCCEEEEEeCCcH--HHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            67888888887773   234444 55788999988753  33444455555   47889999987642     4457899


Q ss_pred             EEEecccccccC
Q 027913          197 AVVGTLVLCSVK  208 (217)
Q Consensus       197 ~V~~~~~l~~~~  208 (217)
                      +++.+..+....
T Consensus        82 iLVNNAGi~~~~   93 (247)
T 4hp8_A           82 ILVNNAGIIRRA   93 (247)
T ss_dssp             EEEECCCCCCCC
T ss_pred             EEEECCCCCCCC
Confidence            999887665443

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=85.85  E-value=1.7  Score=35.35  Aligned_cols=43  Identities=19%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++
T Consensus       178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            4788999999853 666777777667789999999988887765

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=85.56  E-value=1  Score=35.82  Aligned_cols=66  Identities=17%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+||=+|+| .|..+..+++..+.+|++++ +++.++.+++.    |.    -.++ -|.+.+   ...+|+|+-.-
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga----~~v~-~d~~~v---~~g~Dvv~d~~  207 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GV----RHLY-REPSQV---TQKYFAIFDAV  207 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TE----EEEE-SSGGGC---CSCEEEEECC-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CC----CEEE-cCHHHh---CCCccEEEECC
Confidence            578999999996 36777778776778999999 88888877653    32    1222 243333   46799988543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=85.36  E-value=3.4  Score=31.80  Aligned_cols=76  Identities=13%  Similarity=0.067  Sum_probs=55.8

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .++++|=.|++.|.   .+..|+ ..+.+|+.+|.+++.++...+.+...+   .++.++..|+.+..     +     .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCA-EQGADLVLAARTVERLEDVAKQVTDTG---RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHH-HCcCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            67889988887762   334444 457889999999998888888777666   57899999987642     1     1


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+..|+++.+...
T Consensus        86 ~g~id~lv~nAg~   98 (264)
T 3ucx_A           86 YGRVDVVINNAFR   98 (264)
T ss_dssp             TSCCSEEEECCCS
T ss_pred             cCCCcEEEECCCC
Confidence            1478999987644

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=84.83  E-value=1  Score=33.70  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      +|+=+|+  |..+..+++   ..+..|+++|.+++.++...+.        ..+.++.+|..+..    ..-..+|+|++
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~--------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK--------LKATIIHGDGSHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH--------SSSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH--------cCCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence            4666775  555544443   4578999999999987765443        23568888876532    11246788876


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        72 ~~   73 (218)
T 3l4b_C           72 LT   73 (218)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=84.72  E-value=1.3  Score=34.59  Aligned_cols=78  Identities=17%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C----CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V----SD  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~----~~  192 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+++|.+++.++...+.+...+   .++.++..|+.+..     +    ..
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLA-GAGAHVILHGVKPGSTAAVQQRIIASG---GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSTTTTHHHHHHHHHTT---CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            67888888876552   233444 457799999999887777777776655   57899999987642     0    11


Q ss_pred             CceeEEEecccccc
Q 027913          193 ASVDAVVGTLVLCS  206 (217)
Q Consensus       193 ~sfD~V~~~~~l~~  206 (217)
                      +..|+++.+.....
T Consensus       108 g~iD~lvnnAg~~~  121 (275)
T 4imr_A          108 APVDILVINASAQI  121 (275)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCCCCC
Confidence            47899998776543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=84.54  E-value=0.9  Score=37.48  Aligned_cols=43  Identities=23%  Similarity=0.121  Sum_probs=35.3

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |.++..+++..+. .|+++|.+++.++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            5788999999875 7777788876676 79999999998888864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=84.42  E-value=2.7  Score=31.93  Aligned_cols=76  Identities=17%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.|.   +++.|+ ..+.+|+.+|.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALA-REGAAVVVADINAEAAEAVAKQIVADG---GTAISVAVDVSDPESAKAMADRTLAE   83 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            67788888876652   334444 457889999999998888887776665   57889999987642     10     


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+..|+++.+..+
T Consensus        84 ~g~id~li~~Ag~   96 (253)
T 3qiv_A           84 FGGIDYLVNNAAI   96 (253)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1368999987765

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=84.41  E-value=4  Score=31.88  Aligned_cols=80  Identities=14%  Similarity=-0.047  Sum_probs=52.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCC--CCCCeEEEeccccccc-----CCC--
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGL--PLTNFKFLQAVGEAIP-----VSD--  192 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~l~-----~~~--  192 (217)
                      .+++||=.|++.| ++..+++   ..+.+|++++.+++.++...+.+.....  ...++.++.+|+.+..     +..  
T Consensus        17 ~~k~vlVTGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            5678888886544 4444433   4577899999998887776666654110  0147899999987642     111  


Q ss_pred             ---CceeEEEeccccc
Q 027913          193 ---ASVDAVVGTLVLC  205 (217)
Q Consensus       193 ---~sfD~V~~~~~l~  205 (217)
                         +.+|+|+.+....
T Consensus        96 ~~~g~id~li~~Ag~~  111 (303)
T 1yxm_A           96 DTFGKINFLVNNGGGQ  111 (303)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCCCC
Confidence               3689999877643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=84.18  E-value=4.5  Score=30.27  Aligned_cols=78  Identities=13%  Similarity=0.003  Sum_probs=52.6

Q ss_pred             CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHH-HcCCCCCCeEEEeccccccc-----CCC----
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAV-AAGLPLTNFKFLQAVGEAIP-----VSD----  192 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~v~~~~~d~~~l~-----~~~----  192 (217)
                      ++++|=.|++.| +...+++   ..|.+|+.++.+++.++...+.+. ..+   .++.++.+|+.+..     +..    
T Consensus         2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (235)
T 3l77_A            2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG---VEVFYHHLDVSKAESVEEFSKKVLER   77 (235)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHCC-HHHH
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC---CeEEEEEeccCCHHHHHHHHHHHHHh
Confidence            456777776655 3333332   457789999999988877766654 334   47899999987642     111    


Q ss_pred             -CceeEEEeccccccc
Q 027913          193 -ASVDAVVGTLVLCSV  207 (217)
Q Consensus       193 -~sfD~V~~~~~l~~~  207 (217)
                       +..|+++.+..+...
T Consensus        78 ~g~id~li~~Ag~~~~   93 (235)
T 3l77_A           78 FGDVDVVVANAGLGYF   93 (235)
T ss_dssp             HSSCSEEEECCCCCCC
T ss_pred             cCCCCEEEECCccccc
Confidence             368999988776544

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=83.99  E-value=1.6  Score=40.75  Aligned_cols=71  Identities=7%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---------------
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---------------  188 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---------------  188 (217)
                      ...++||+=||.|.+...|.+... .-++++|+++..++..+.+.       ++..++..|+..+               
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-------p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-------PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-------TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-------CCCccccccHHHHhhhccchhhhhhhhh
Confidence            456899999999999888764332 35889999999888777664       3456676665432               


Q ss_pred             cCC-CCceeEEEecc
Q 027913          189 PVS-DASVDAVVGTL  202 (217)
Q Consensus       189 ~~~-~~sfD~V~~~~  202 (217)
                      .++ .+.+|+|+...
T Consensus       612 ~lp~~~~vDll~GGp  626 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGP  626 (1002)
T ss_dssp             BCCCTTTCSEEEECC
T ss_pred             hcccCCCeeEEEEcC
Confidence            021 35789998643

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=83.78  E-value=1.8  Score=34.82  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             CCCCeEEEECCc--CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|  .|..+..+++..+.+|+++|.+++.++.+++
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            578899999987  5677777777677899999999988887775

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=83.74  E-value=2.4  Score=35.00  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|. |..+..+++..+. .|+++|.+++.++.+++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            4788999999863 5666777776676 899999999988888754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=83.51  E-value=3.4  Score=32.55  Aligned_cols=78  Identities=12%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .+++||=.|++.|.   ++..|+ ..|.+|++++.+++.++.+.+.+...+   .++.++..|+.+..     +.     
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFA-RRGARLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDVRHLDEMVRLADEAFRL  105 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            67789988887662   334444 457889999999999888888777665   47899999987642     11     


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+..+..
T Consensus       106 ~g~id~lvnnAg~~~  120 (301)
T 3tjr_A          106 LGGVDVVFSNAGIVV  120 (301)
T ss_dssp             HSSCSEEEECCCCCC
T ss_pred             CCCCCEEEECCCcCC
Confidence            136899998876553

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=83.31  E-value=0.93  Score=37.10  Aligned_cols=43  Identities=26%  Similarity=0.275  Sum_probs=35.6

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4788999999874 677777777778889999999998888775

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.94  E-value=3.7  Score=31.58  Aligned_cols=80  Identities=15%  Similarity=0.025  Sum_probs=53.8

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-CCCce
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-SDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-~~~sf  195 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+...+.. ..+.++..|+.+..     + .-+..
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLV-AEGANVLINGRREENVNETIKEIRAQYPD-AILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHCTT-CEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhhCCC-ceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            56788887876552   233343 45789999999998887777766655322 46778888886532     1 12468


Q ss_pred             eEEEecccccc
Q 027913          196 DAVVGTLVLCS  206 (217)
Q Consensus       196 D~V~~~~~l~~  206 (217)
                      |+++.+.....
T Consensus        87 d~lv~nAg~~~   97 (267)
T 3t4x_A           87 DILINNLGIFE   97 (267)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEECCCCCC
Confidence            99998776544

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=82.83  E-value=1.2  Score=36.06  Aligned_cols=43  Identities=21%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            4788999999874 666777777777789999999998887764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=82.65  E-value=4.9  Score=30.98  Aligned_cols=78  Identities=14%  Similarity=0.064  Sum_probs=53.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .+++||=.|++.| ++..+++   ..+.+|+++|.+++.++...+.+...+   .++.++.+|+.+..     +     .
T Consensus        30 ~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC---CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5678888886654 4444433   457889999999988777766666555   47889999987642     1     1


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+.+|+|+.+.....
T Consensus       106 ~g~iD~li~~Ag~~~  120 (272)
T 1yb1_A          106 IGDVSILVNNAGVVY  120 (272)
T ss_dssp             TCCCSEEEECCCCCC
T ss_pred             CCCCcEEEECCCcCC
Confidence            146899998776543

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=82.39  E-value=4.2  Score=31.13  Aligned_cols=79  Identities=18%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             CCCeEEEECC-cCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC----
Q 027913          125 KAKKVLEIGI-GTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----  191 (217)
Q Consensus       125 ~~~~vLDiGc-G~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----  191 (217)
                      .++++|=.|+ |.|.   ++..|+ ..+.+|+.+|.+++.++...+.+.+.+-  .++.++..|+.+..     +.    
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHERRLGETRDQLADLGL--GRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTCS--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCHHHHHHHHHHHHhcCC--CceEEEEeCCCCHHHHHHHHHHHHH
Confidence            6778888887 5552   344444 4578899999999988887777755442  57999999997642     10    


Q ss_pred             -CCceeEEEecccccc
Q 027913          192 -DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 -~~sfD~V~~~~~l~~  206 (217)
                       -+..|+++.+..+..
T Consensus        98 ~~g~id~li~~Ag~~~  113 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HHSCCCEEEECCCCCC
T ss_pred             HhCCCcEEEECCCcCC
Confidence             136899998877544

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=82.18  E-value=3.1  Score=31.90  Aligned_cols=76  Identities=13%  Similarity=0.055  Sum_probs=54.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .+++||=.|++.| ++..+++   ..|.+|++++.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG---GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC---CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            6778888887655 4433332   457889999999998888887777665   47889999987642     11     


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+..|+|+.+..+
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1468999987765

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=82.05  E-value=5.3  Score=30.11  Aligned_cols=77  Identities=16%  Similarity=-0.014  Sum_probs=51.7

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .+++||=.|++ |.+...+++   ..+.+|++++.+++.++...+.+...+   .++.++.+|+.+..     +.     
T Consensus        10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC---CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            56778877754 444444443   557899999999987776666665544   47888999987642     11     


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+.+|+|+.+....
T Consensus        86 ~~~~d~vi~~Ag~~   99 (255)
T 1fmc_A           86 LGKVDILVNNAGGG   99 (255)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             cCCCCEEEECCCCC
Confidence            13689999876554

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=82.04  E-value=2.3  Score=32.70  Aligned_cols=79  Identities=10%  Similarity=0.062  Sum_probs=55.4

Q ss_pred             CCCeEEEECCcC--C--c-chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------
Q 027913          125 KAKKVLEIGIGT--G--P-NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------  189 (217)
Q Consensus       125 ~~~~vLDiGcG~--G--~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------  189 (217)
                      .++++|=-|++.  |  . .++.|+ ..|.+|+.+|.+++.++.+.+.+.+.+-  .++.++..|+.+..          
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERSRKELEKLLEQLNQ--PEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGGHHHHHHHHGGGTC--SSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCC--CcEEEEEccCCCHHHHHHHHHHHH
Confidence            688999998643  3  2 234444 5678999999999888888877766543  47889999986632          


Q ss_pred             CCCCceeEEEecccccc
Q 027913          190 VSDASVDAVVGTLVLCS  206 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~  206 (217)
                      -.-+..|+++.+..+..
T Consensus        82 ~~~G~iD~lvnnAg~~~   98 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFAN   98 (256)
T ss_dssp             HHHCCCSEEEECCCCCC
T ss_pred             HHhCCCCEEEecccccc
Confidence            01257999998766543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=81.32  E-value=2.8  Score=32.12  Aligned_cols=77  Identities=16%  Similarity=0.038  Sum_probs=51.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .+++||=.|++.| +...+++   ..+.+|++++.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus        13 ~~k~vlITGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            5677887776544 4444433   457799999999887777666665554   46888999987642     11     


Q ss_pred             -CCceeEEEeccccc
Q 027913          192 -DASVDAVVGTLVLC  205 (217)
Q Consensus       192 -~~sfD~V~~~~~l~  205 (217)
                       .+.+|+|+.+....
T Consensus        89 ~~~~id~li~~Ag~~  103 (266)
T 1xq1_A           89 FGGKLDILINNLGAI  103 (266)
T ss_dssp             HTTCCSEEEEECCC-
T ss_pred             hCCCCcEEEECCCCC
Confidence             15689999876543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=81.12  E-value=3.3  Score=31.82  Aligned_cols=87  Identities=20%  Similarity=0.100  Sum_probs=53.3

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.| +...+++   ..|.+|++++.+++..+...+.+.+.... .++.++.+|+.+..     +.     
T Consensus         6 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            6 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEP-QKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCG-GGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCc-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCC-CceEEEecCCCCHHHHHHHHHHHHHH
Confidence            4567888887655 3333332   45789999999987766555444322101 36788999987642     11     


Q ss_pred             CCceeEEEecccccccCChhhh
Q 027913          192 DASVDAVVGTLVLCSVKDVDMT  213 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~~~  213 (217)
                      -+..|+++.+.......+.++.
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~  105 (267)
T 2gdz_A           84 FGRLDILVNNAGVNNEKNWEKT  105 (267)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHH
T ss_pred             cCCCCEEEECCCCCChhhHHHH
Confidence            1358999988766544444433

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=81.03  E-value=1.2  Score=35.81  Aligned_cols=42  Identities=17%  Similarity=0.279  Sum_probs=34.3

Q ss_pred             CCCeEEEECCcC-CcchHhhhhCC--CCeEEEecCCHHHHHHHHH
Q 027913          125 KAKKVLEIGIGT-GPNLKYYAADT--DVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~  166 (217)
                      ++.+||-+|+|. |..+..+++..  +.+|+++|.+++.++.+++
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE  214 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence            788999999864 66677777665  7899999999998888765

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=81.01  E-value=8.5  Score=29.90  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--------CCCCeEEEec-----CCH----------------------HHHHHHHH--
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--------DTDVQVLGVD-----PNR----------------------KMEKYAQT--  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD-----~s~----------------------~~l~~a~~--  166 (217)
                      .-++.|+|+|+-.|..+..++.        ....+++++|     +.+                      +.++...+  
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            4678999999999987776553        2356899999     321                      11211111  


Q ss_pred             -HHHHcCCCCCCeEEEecccccc-c-----CCCCceeEEEecc
Q 027913          167 -AAVAAGLPLTNFKFLQAVGEAI-P-----VSDASVDAVVGTL  202 (217)
Q Consensus       167 -~~~~~~~~~~~v~~~~~d~~~l-~-----~~~~sfD~V~~~~  202 (217)
                       +....+....+++++.+++.+. |     .+..+||+|..=.
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~  190 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL  190 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC
Confidence             1112333237899999998763 3     3456799998643

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=80.81  E-value=2  Score=34.79  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=36.2

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCe-EEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQ-VLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|. |..+..+++..|.+ |+++|.+++.++.+++.
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            5788999999864 67777787777775 99999999999888875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=80.73  E-value=1.7  Score=35.37  Aligned_cols=44  Identities=18%  Similarity=0.092  Sum_probs=35.9

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||-+|+|. |..+..+++..+.+|+++|.+++.++.+++.
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence            5788999999774 6677777777788999999999988887653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=80.71  E-value=2.1  Score=34.12  Aligned_cols=43  Identities=14%  Similarity=0.158  Sum_probs=34.6

Q ss_pred             CCCCeEEEECC--cCCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+  |.|..+..+++..+.+|+++|.+++.++.+++
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  183 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA  183 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57889999983  45777777777677899999999998888775

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=80.71  E-value=2.9  Score=33.56  Aligned_cols=43  Identities=26%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+| .|..+..+++..+.+|+++|.+++.++.+++
T Consensus       163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            478899999986 3566666666677899999999998887764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=80.64  E-value=14  Score=28.93  Aligned_cols=79  Identities=14%  Similarity=-0.013  Sum_probs=48.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE-eccccccc-CCC--CceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL-QAVGEAIP-VSD--ASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~-~~d~~~l~-~~~--~sfD~  197 (217)
                      .+++||=.|+ +|.++..+++   ..+.+|++++.++...+...+.+....-  .+++++ .+|+.+.. +..  ..+|+
T Consensus        10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A           10 EGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP--GRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST--TTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCC--CceEEEEecCCcChHHHHHHHcCCCE
Confidence            5678887775 4555444443   4578999999988766555444332211  367888 78887643 111  26899


Q ss_pred             EEecccccc
Q 027913          198 VVGTLVLCS  206 (217)
Q Consensus       198 V~~~~~l~~  206 (217)
                      |+.......
T Consensus        87 vih~A~~~~   95 (342)
T 1y1p_A           87 VAHIASVVS   95 (342)
T ss_dssp             EEECCCCCS
T ss_pred             EEEeCCCCC
Confidence            998765543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=80.56  E-value=4  Score=31.22  Aligned_cols=76  Identities=14%  Similarity=0.119  Sum_probs=52.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+++|.+++.++...+.+   +   .++.++..|+.+..     +     .
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~-~~G~~V~~~~r~~~~~~~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLV-EGGAEVLLTGRNESNIARIREEF---G---PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHH---G---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHh---C---CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            67889988877662   234444 45789999999998777666554   2   47889999987642     0     1


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+++.+..+...
T Consensus        80 ~g~id~lv~nAg~~~~   95 (255)
T 4eso_A           80 LGAIDLLHINAGVSEL   95 (255)
T ss_dssp             HSSEEEEEECCCCCCC
T ss_pred             hCCCCEEEECCCCCCC
Confidence            1479999987765543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=80.45  E-value=2.4  Score=33.86  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=34.6

Q ss_pred             CCCCeEEEECC--cCCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||-+|+  |.|..+..+++..+.+|+++|.+++.++.+++
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            57889999994  45667777777778899999999998877765

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.45  E-value=4.3  Score=31.53  Aligned_cols=78  Identities=15%  Similarity=0.134  Sum_probs=54.6

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|++++.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLA-ARGIAVYGCARDAKNVSAAVDGLRAAG---HDVDGSSCDVTSTDEVHAAVAAAVER   98 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            56789988877662   234444 457889999999998888877776655   47899999987642     10     


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+..+..
T Consensus        99 ~g~id~lv~nAg~~~  113 (279)
T 3sju_A           99 FGPIGILVNSAGRNG  113 (279)
T ss_dssp             HCSCCEEEECCCCCC
T ss_pred             cCCCcEEEECCCCCC
Confidence            146899998776544

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=80.43  E-value=3.8  Score=31.66  Aligned_cols=78  Identities=13%  Similarity=-0.014  Sum_probs=54.8

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      .++++|=.|++.|.   ++..|+ ..|.+|++++.+++.++...+.+...+   .++.++..|+.+..     +     .
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   78 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELG-VAGAKILLGARRQARIEAIATEIRDAG---GTALAQVLDVTDRHSVAAFAQAAVDT   78 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45678877877652   233443 457889999999998888887777665   47888999987642     0     0


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+..+..
T Consensus        79 ~g~iD~lVnnAG~~~   93 (264)
T 3tfo_A           79 WGRIDVLVNNAGVMP   93 (264)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            146899998876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=80.19  E-value=2.1  Score=34.23  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             CCCeEEEECCcCCcchHhhh----h-CCCC--eEEEecCCH--------HHHHH-HHHHHHHc-CCCCC--CeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYA----A-DTDV--QVLGVDPNR--------KMEKY-AQTAAVAA-GLPLT--NFKFLQAVG  185 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~gvD~s~--------~~l~~-a~~~~~~~-~~~~~--~v~~~~~d~  185 (217)
                      ..-+|||+|-|+|.++....    + .+..  +++.+|..+        +.+.. .+...... .+...  .+.+..+|+
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            45689999999998753322    1 3333  456666421        11112 22222211 00012  346778888


Q ss_pred             ccc-c-CCCCceeEEEe
Q 027913          186 EAI-P-VSDASVDAVVG  200 (217)
Q Consensus       186 ~~l-~-~~~~sfD~V~~  200 (217)
                      ... + +++..||+|+.
T Consensus       176 ~~~l~~l~~~~~Da~fl  192 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFH  192 (308)
T ss_dssp             HHHGGGCCSCCEEEEEE
T ss_pred             HHHHhhhcccceeEEEe
Confidence            653 3 45568999985

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=80.17  E-value=5.1  Score=27.91  Aligned_cols=69  Identities=7%  Similarity=-0.056  Sum_probs=42.0

Q ss_pred             CCeEEEECCcCCcchHhhhh---CCCCeEEEecCC-HHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeE
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPN-RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDA  197 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~  197 (217)
                      ..+|+=+|+  |..+..+++   ..+..|+++|.+ ++.++...+.. .     ..+.++.+|..+..    ..-...|+
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~-----~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-G-----DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-C-----TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-c-----CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            456777775  555555543   457889999997 55444444322 1     24678889876432    11246788


Q ss_pred             EEecc
Q 027913          198 VVGTL  202 (217)
Q Consensus       198 V~~~~  202 (217)
                      |++..
T Consensus        75 vi~~~   79 (153)
T 1id1_A           75 ILALS   79 (153)
T ss_dssp             EEECS
T ss_pred             EEEec
Confidence            87653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=80.13  E-value=5.2  Score=30.43  Aligned_cols=77  Identities=13%  Similarity=-0.015  Sum_probs=51.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh---C-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC----
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---D-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~----  191 (217)
                      .+++||=.|+ +|.++..+++   . .+.+|++++.+++.++...+.+...+   .++.++.+|+.+..     +.    
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            4567776664 4555544443   4 67899999999887777776666554   46889999987642     11    


Q ss_pred             -CCceeEEEeccccc
Q 027913          192 -DASVDAVVGTLVLC  205 (217)
Q Consensus       192 -~~sfD~V~~~~~l~  205 (217)
                       -+.+|+|+.+....
T Consensus        79 ~~g~id~li~~Ag~~   93 (276)
T 1wma_A           79 EYGGLDVLVNNAGIA   93 (276)
T ss_dssp             HHSSEEEEEECCCCC
T ss_pred             hcCCCCEEEECCccc
Confidence             13699999776543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=80.10  E-value=3.8  Score=31.38  Aligned_cols=78  Identities=13%  Similarity=0.036  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC-----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS-----  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~-----  191 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+...+   .++.++..|+.+..     +.     
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFA-KAGASVVVTDLKSEGAEAVAAAIRQAG---GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHH-HHTCEEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            67788888877662   233343 457789999999998888877776665   57899999987642     11     


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+..+..
T Consensus        87 ~g~id~lv~nAg~~~  101 (256)
T 3gaf_A           87 FGKITVLVNNAGGGG  101 (256)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            136899998776544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	4e-09
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-06
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	4e-06
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	6e-06
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	5e-04
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	6e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	7e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	7e-04
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	7e-04
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	0.001
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.001
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.002
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.003
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	0.004
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.004
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	0.004

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 9/137 (6%)

Query: 89  PDWY-EEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGK-AKKVLEIGIGTGPNLKYYAAD 146
           PD Y +   A V    +    +  A YK+ L   LR     +VL++  GTG +      +
Sbjct: 18  PDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIML-VE 76

Query: 147 TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA------IPVSDASVDAVVG 200
               V  VD + KM KYA              K++            +P  D     +  
Sbjct: 77  EGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL 136

Query: 201 TLVLCSVKDVDMTLQAP 217
                 + D        
Sbjct: 137 GNSFAHLPDSKGDQSEH 153

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 103 SMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEK 162
           ++++    +   K+ L      +   VL++G G G +L  Y      +  GVD       
Sbjct: 5   NIRNANNFI---KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIN 61

Query: 163 YAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVKDVDMTLQAP 217
            A+  A         F   Q             D +              +L   
Sbjct: 62  DARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIA 116

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 32/186 (17%)

Query: 37  LCG------GKSCCCGSRRHFIQGASTALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPD 90
           LC         S  C  R  F       +  L        +  P DS  M+      R  
Sbjct: 6   LCHQPLSREKNSYICPQRHQFDMAKEGYVNLLP--VQHKRSRDPGDSAEMMQA----RRA 59

Query: 91  WYEE-FYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD-TD 148
           + +   Y  + ++ +            QL + L  KA  VL+IG G G     +A    +
Sbjct: 60  FLDAGHYQPLRDAIVA-----------QLRERLDDKATAVLDIGCGEGYYTHAFADALPE 108

Query: 149 VQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK 208
           +   G+D ++   K A               F  A    +P SD S+DA++     C  +
Sbjct: 109 ITTFGLDVSKVAIKAAAK-------RYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE 161

Query: 209 DVDMTL 214
           ++   +
Sbjct: 162 ELARVV 167

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.6 bits (101), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 90  DWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDV 149
               E+Y ++    ++  +AE+   +    ++ + + ++VL++  GTG       A+   
Sbjct: 6   TLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL-AERGY 64

Query: 150 QVLGVDPNRKMEKY 163
           +V+G+D + +M + 
Sbjct: 65  EVVGLDLHEEMLRV 78

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 22/140 (15%)

Query: 92  YEEFYASVMNSS-----MKSY-EAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA 145
           Y E +   +N S     M+ + + ++ G   ++ D       K+L IG G G       +
Sbjct: 3   YVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEI--KILSIGGGAGEIDLQILS 60

Query: 146 -------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-------GEAIPVS 191
                     +    V+P+ +     +                                 
Sbjct: 61  KVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE 120

Query: 192 DASVDAVVGTLVLCSVKDVD 211
               D +    +L  VKD+ 
Sbjct: 121 LQKWDFIHMIQMLYYVKDIP 140

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 108 EAEVAGYKSQLFDNLRGKA-KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT 166
           ++EV     Q + +L      +VL    G   ++ + +      V+G + +    +   T
Sbjct: 2   QSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFT 60

Query: 167 AA 168
             
Sbjct: 61  ER 62

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
           +   +LE+G   G        +    +  V+ + +   +
Sbjct: 20  RPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISH 57

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 90  DWYEEF---YASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA 144
           + Y +F   Y  ++ + +  Y+     +  +            L++  GTG   +   
Sbjct: 1   NCYNKFAHIYDKLIRADV-DYKKWSD-FIIEKCVENNLVFDDYLDLACGTGNLTENLC 56

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKM 160
             ++VL++  G G     +A     +V+  D    +
Sbjct: 15  GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDI 49

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.7 bits (84), Expect = 7e-04
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA 183
           GK    +++G GTG  +    A    +V  +D N +     +      GL   N   ++ 
Sbjct: 32  GKNDVAVDVGCGTG-GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEG 89

Query: 184 VGEAIPVSDASVDAVVGTLVLCSVKDVDMTL 214
                      +D  V       ++++   +
Sbjct: 90  DAPEALCKIPDIDIAVVGGSGGELQEILRII 120

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 110 EVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKM 160
           E       LF N        +E+G G G  +   A  + D+  +G+D  + +
Sbjct: 19  EAKAKWRDLFGN---DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSV 67

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 90  DWYEEFYASV-MNSSMKSYEAEVAGYKSQLFDNL-RGKAKKVLEIGIGTGPNLKYYAADT 147
           D+Y + Y    ++  M         Y++ +  N    K K VL++G GTG    + A   
Sbjct: 1   DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60

Query: 148 DVQVLGVDPNRKMEKYAQTAAVAAGL 173
              V+GVD +  + + A+      G 
Sbjct: 61  AKHVIGVDMS-SIIEMAKELVELNGF 85

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 25/143 (17%)

Query: 81  LNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYK---------------SQLFDNLR-G 124
           +     P           V N S+ +   ++  Y+               +Q+ D ++  
Sbjct: 92  MKLNTRPSTGLLRHILQQVYNHSV-TDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMT 150

Query: 125 KAKKVLEIGIGTGPNLKYYAADTDVQ-VLGVDPN-------RKMEKYAQTAAVAAGLPLT 176
                +++G G G  +   AA T+ +   GV+           M++  +      G    
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210

Query: 177 NFKFLQAVGEAIPVSDASVDAVV 199
            +   +    +    +   +  V
Sbjct: 211 EYTLERGDFLSEEWRERIANTSV 233

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAA 168
           Y+  ++ N    K K VL++G GTG    + A     +VLGVD +  + +      
Sbjct: 23  YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIR 78

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYA-ADTDVQVLGVDPNRKMEKYAQTAA 168
           + +F N        +E+G G G  +   A  + D+  +G++  + +   A    
Sbjct: 23  NTVFGN---DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKV 73

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKY 163
            +VL+IG G G     ++     + +GVD  ++M + 
Sbjct: 18  HRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEV 53

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 12/132 (9%), Positives = 27/132 (20%), Gaps = 32/132 (24%)

Query: 117 QLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT 176
           + F     +   +++IG G        A D+   +   D   +  +  +           
Sbjct: 43  KTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYD 102

Query: 177 NFKFLQAV--------------------------------GEAIPVSDASVDAVVGTLVL 204
               ++                                      P      D V+  L +
Sbjct: 103 WTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM 162

Query: 205 CSVKDVDMTLQA 216
                     +A
Sbjct: 163 ECACCSLDAYRA 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.85
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.85
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.84
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.83
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.8
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.77
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.76
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.75
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.75
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.75
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.74
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.73
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.72
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.71
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.71
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.71
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.65
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.59
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.58
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.57
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.55
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.52
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.52
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.48
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.47
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.47
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.46
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.44
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.43
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.42
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.41
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.41
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.4
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.4
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.39
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.38
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.37
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.36
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.35
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.34
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.33
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.31
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.29
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.28
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.26
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.25
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.23
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.16
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.1
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.09
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.03
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.03
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.99
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.99
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.97
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.97
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.96
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.95
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.92
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.87
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.85
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.83
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.77
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.65
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.64
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.64
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.56
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.55
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.54
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.44
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.36
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.33
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.26
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.22
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.21
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.18
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.08
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.05
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.04
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.98
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.97
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.95
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.93
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.89
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.83
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.61
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.55
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.49
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.46
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.41
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.3
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.9
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.69
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.45
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.4
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.04
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	95.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.81
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.76
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.63
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.55
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.14
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.88
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	93.65
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.6
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.49
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.16
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.61
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	92.58
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.54
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.41
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.35
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.98
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.72
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	91.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.52
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.48
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	91.45
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	91.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.14
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	91.07
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.95
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	90.82
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.79
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.77
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.34
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.99
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	88.89
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.7
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	88.68
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	88.52
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.34
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.27
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	88.05
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.68
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.55
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.32
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.29
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.81
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.78
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.5
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	86.47
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	85.38
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	84.79
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.11
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.05
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	83.87
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.83
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.44
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.44
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	82.28
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.04
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	81.88
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	81.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	81.48
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	81.42
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.41
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	81.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	81.29

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.85  E-value=2.7e-21  Score=150.16  Aligned_cols=96  Identities=24%  Similarity=0.420  Sum_probs=87.1

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...++  .++.++++|++++|+++++||
T Consensus         8 l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD   84 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV--ENVRFQQGTAESLPFPDDSFD   84 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC--CSEEEEECBTTBCCSCTTCEE
T ss_pred             HHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc--ccccccccccccccccccccc
Confidence            445554 68999999999999999999854 57899999999999999999998887  589999999999999999999


Q ss_pred             EEEecccccccCChhhhhcC
Q 027913          197 AVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +|++.++++|++|+..+|+|
T Consensus        85 ~v~~~~~l~~~~d~~~~l~~  104 (234)
T d1xxla_          85 IITCRYAAHHFSDVRKAVRE  104 (234)
T ss_dssp             EEEEESCGGGCSCHHHHHHH
T ss_pred             eeeeeceeecccCHHHHHHH
Confidence            99999999999999998875

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=3.9e-21  Score=152.35  Aligned_cols=149  Identities=24%  Similarity=0.420  Sum_probs=107.5

Q ss_pred             ceecCCcchhhhhcc--cccCCCccCCCCCCCCCCCChhhhhhhcCCCChhhhHHHHHHHhhhhhHhHHHHHHHHHHHHH
Q 027913           42 SCCCGSRRHFIQGAS--TALFPLVYSSTPSSASSPSDSMAMLNRLHPPRPDWYEEFYASVMNSSMKSYEAEVAGYKSQLF  119 (217)
Q Consensus        42 ~c~c~~~~~f~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  119 (217)
                      ...|.++|+|+.+++  .++++..    .+.+..+.+...+.....            .++..+  .|..........+.
T Consensus        17 ~l~C~~~h~fd~~~~Gy~~ll~~~----~~~~~~~~~~~~~~~ar~------------~~l~~g--~~~~l~~~~~~~l~   78 (268)
T d1p91a_          17 SYICPQRHQFDMAKEGYVNLLPVQ----HKRSRDPGDSAEMMQARR------------AFLDAG--HYQPLRDAIVAQLR   78 (268)
T ss_dssp             EEECTTCCEEEBCTTSCEECSCSS----SSCSCCCSSSHHHHHHHH------------HHHTTT--TTHHHHHHHHHHHH
T ss_pred             eEECCCCCccccccCceEeccccc----ccccCCCCCCHHHHHHHH------------HHHHcC--chHHHHHHHHHHHH
Confidence            367888999999876  6677655    444433344443333211            111111  12222233334444


Q ss_pred             HHhcCCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          120 DNLRGKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      +.+..++.+|||||||+|.++..+++. ++..++|+|+|+.|++.|+++.       .++.|+++|++++|+++++||+|
T Consensus        79 ~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-------~~~~~~~~d~~~l~~~~~sfD~v  151 (268)
T d1p91a_          79 ERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------PQVTFCVASSHRLPFSDTSMDAI  151 (268)
T ss_dssp             HHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTSCSBCTTCEEEE
T ss_pred             HhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------ccccceeeehhhccCCCCCEEEE
Confidence            555567889999999999999999864 5679999999999999998763       58899999999999999999999


Q ss_pred             EecccccccCChhhhhc
Q 027913          199 VGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       199 ~~~~~l~~~~d~~~~L~  215 (217)
                      ++.++++|+.+..++|+
T Consensus       152 ~~~~~~~~~~e~~rvLk  168 (268)
T d1p91a_         152 IRIYAPCKAEELARVVK  168 (268)
T ss_dssp             EEESCCCCHHHHHHHEE
T ss_pred             eecCCHHHHHHHHHHhC
Confidence            99999999887777665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.84  E-value=3.2e-21  Score=149.13  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=86.4

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCce
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      ++++... .++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|++++...+.  .+++|+++|++++|+++++|
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~--~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH--QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc--cccccccccccccccccccc
Confidence            3555555 57899999999999999998854 57899999999999999999988887  68999999999999999999


Q ss_pred             eEEEecccccccCChhhhhcC
Q 027913          196 DAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       196 D~V~~~~~l~~~~d~~~~L~e  216 (217)
                      |+|++.++++|++|++.+|+|
T Consensus        83 D~v~~~~~l~~~~d~~~~l~~  103 (231)
T d1vl5a_          83 HIVTCRIAAHHFPNPASFVSE  103 (231)
T ss_dssp             EEEEEESCGGGCSCHHHHHHH
T ss_pred             ccccccccccccCCHHHHHHH
Confidence            999999999999999999876

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.83  E-value=1.4e-20  Score=150.08  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++..+.+|+|+|+|+.|++.|+++....++. .+++|+++|++++|+++++||+|++..+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~-~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccc-ccccccccccccccccccccchhhccch
Confidence            578999999999999999998766789999999999999999999999986 6899999999999999999999999999


Q ss_pred             ccccCChhhhhcC
Q 027913          204 LCSVKDVDMTLQA  216 (217)
Q Consensus       204 l~~~~d~~~~L~e  216 (217)
                      ++|++++..+|+|
T Consensus       145 l~h~~d~~~~l~~  157 (282)
T d2o57a1         145 FLHSPDKLKVFQE  157 (282)
T ss_dssp             GGGCSCHHHHHHH
T ss_pred             hhhccCHHHHHHH
Confidence            9999999998875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=1e-20  Score=145.44  Aligned_cols=98  Identities=19%  Similarity=0.247  Sum_probs=83.5

Q ss_pred             HHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          115 KSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       115 ~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      ...++.+..++..+|||||||+|.++..+++ .+.+|+|+|+|++|++.|++++...+.   ++.++++|++++++++++
T Consensus        27 ~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~~~~~  102 (226)
T d1ve3a1          27 LEPLLMKYMKKRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKT  102 (226)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCTTSCCSCTTC
T ss_pred             HHHHHHHhcCCCCEEEEECCCcchhhhhHhh-hhcccccccccccchhhhhhhhccccc---cccccccccccccccCcC
Confidence            3445555445778999999999999999985 577999999999999999999988773   678999999999999999


Q ss_pred             eeEEEecccccccC--ChhhhhcC
Q 027913          195 VDAVVGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       195 fD~V~~~~~l~~~~--d~~~~L~e  216 (217)
                      ||+|++..+++|++  |+..+|++
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~  126 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKE  126 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHH
T ss_pred             ceEEEEecchhhCChhHHHHHHHH
Confidence            99999999999997  55566654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.2e-20  Score=142.68  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=86.6

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +.+.+. .++.+|||||||+|.++..+++..+.+|+|||+|+.|++.|+++....++. ++++|+++|++.+ +++++||
T Consensus        25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~-~~v~~~~~d~~~~-~~~~~fD  102 (245)
T d1nkva_          25 LGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVS-ERVHFIHNDAAGY-VANEKCD  102 (245)
T ss_dssp             HHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEESCCTTC-CCSSCEE
T ss_pred             HHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhcc-ccchhhhhHHhhc-cccCcee
Confidence            445554 588999999999999999998766789999999999999999999999986 6899999999998 4678999


Q ss_pred             EEEecccccccCChhhhhcC
Q 027913          197 AVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +|++..+++|++|+..+|++
T Consensus       103 ~v~~~~~~~~~~d~~~~l~~  122 (245)
T d1nkva_         103 VAACVGATWIAGGFAGAEEL  122 (245)
T ss_dssp             EEEEESCGGGTSSSHHHHHH
T ss_pred             EEEEEehhhccCCHHHHHHH
Confidence            99999999999999998875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=2e-19  Score=139.81  Aligned_cols=97  Identities=22%  Similarity=0.329  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       111 ~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      ...+...++.....++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.|+++.        ...++.+|++++|+
T Consensus        28 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~~~--------~~~~~~~~~~~l~~   98 (246)
T d2avna1          28 YHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQE-RGFEVVLVDPSKEMLEVAREKG--------VKNVVEAKAEDLPF   98 (246)
T ss_dssp             HHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHT-TTCEEEEEESCHHHHHHHHHHT--------CSCEEECCTTSCCS
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCCCchhcccccc-cceEEEEeeccccccccccccc--------cccccccccccccc
Confidence            44555556666656788999999999999999984 5779999999999999999863        22478899999999


Q ss_pred             CCCceeEEEec-ccccccCChhhhhcC
Q 027913          191 SDASVDAVVGT-LVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~-~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++. .++||++|++++|++
T Consensus        99 ~~~~fD~ii~~~~~~~~~~d~~~~l~~  125 (246)
T d2avna1          99 PSGAFEAVLALGDVLSYVENKDKAFSE  125 (246)
T ss_dssp             CTTCEEEEEECSSHHHHCSCHHHHHHH
T ss_pred             ccccccceeeecchhhhhhhHHHHHHH
Confidence            99999999985 589999999998875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=7.5e-19  Score=137.22  Aligned_cols=119  Identities=21%  Similarity=0.339  Sum_probs=88.6

Q ss_pred             ChhhhHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913           88 RPDWYEEFYASVMNSSMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      ...+|+..|.    .....+.. .......++.... .++++|||||||+|.++..+++ .+.+|+|||+|+.|++.|++
T Consensus         8 ~a~~Yd~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~   81 (251)
T d1wzna1           8 LAEYYDTIYR----RRIERVKA-EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-RGYEVVGLDLHEEMLRVARR   81 (251)
T ss_dssp             TGGGHHHHTH----HHHHTHHH-HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHH
T ss_pred             hHHHHHHHHH----hhhhhHHH-HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcc-cceEEEEEeecccccccccc
Confidence            3445554433    33333443 2345555666655 5678999999999999999985 46789999999999999999


Q ss_pred             HHHHcCCCCCCeEEEecccccccCCCCceeEEEecc-cccccC--ChhhhhcC
Q 027913          167 AAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL-VLCSVK--DVDMTLQA  216 (217)
Q Consensus       167 ~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~-~l~~~~--d~~~~L~e  216 (217)
                      ++.+.++   ++.++++|+++++++ ++||+|++.+ +++|+.  +...+|++
T Consensus        82 ~~~~~~~---~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~  130 (251)
T d1wzna1          82 KAKERNL---KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSK  130 (251)
T ss_dssp             HHHHTTC---CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHH
T ss_pred             ccccccc---cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHH
Confidence            9988774   789999999999987 5899999974 777763  44455553

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.76  E-value=3.6e-18  Score=131.54  Aligned_cols=121  Identities=14%  Similarity=0.177  Sum_probs=94.2

Q ss_pred             hHHHHHHHhhhhhHhHHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHH
Q 027913           92 YEEFYASVMNSSMKSYEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAA  168 (217)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~  168 (217)
                      ..+.|+....+..+.|+. +......++.....++.+|||||||+|..+..+++   .++.+|+|+|+|++|++.|++++
T Consensus         7 ~a~~fdd~i~~~iP~Y~~-~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_           7 VAEVFPDMIQRSVPGYSN-IITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHHHHHHHHHHSTTHHH-HHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHH-HHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHh
Confidence            344444444444455776 55666667777666888999999999999988875   36789999999999999999999


Q ss_pred             HHcCCCCCCeEEEecccccccCCCCceeEEEecccccccC--ChhhhhcC
Q 027913          169 VAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVLCSVK--DVDMTLQA  216 (217)
Q Consensus       169 ~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~~~~--d~~~~L~e  216 (217)
                      .+.+.. .++.+..+|+.+++  ...+|+|++..++||++  |+..+|++
T Consensus        86 ~~~~~~-~~~~~~~~d~~~~~--~~~~d~i~~~~~l~~~~~~d~~~~l~~  132 (225)
T d1im8a_          86 AAYHSE-IPVEILCNDIRHVE--IKNASMVILNFTLQFLPPEDRIALLTK  132 (225)
T ss_dssp             HTSCCS-SCEEEECSCTTTCC--CCSEEEEEEESCGGGSCGGGHHHHHHH
T ss_pred             Hhhccc-chhhhccchhhccc--cccceeeEEeeeccccChhhHHHHHHH
Confidence            877654 67888888887765  45799999999999995  66677764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2.9e-18  Score=130.37  Aligned_cols=78  Identities=27%  Similarity=0.450  Sum_probs=70.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++.+|||||||+|.++..+.     +++|||+|+.|++.++++         ++.++++|++++|+++++||+|++.++|
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~l  101 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTTI  101 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc---------cccccccccccccccccccccccccccc
Confidence            66789999999999988874     468999999999999874         5789999999999999999999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++|+..+|++
T Consensus       102 ~h~~d~~~~l~~  113 (208)
T d1vlma_         102 CFVDDPERALKE  113 (208)
T ss_dssp             GGSSCHHHHHHH
T ss_pred             ccccccccchhh
Confidence            999999998875

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.4e-19  Score=144.01  Aligned_cols=108  Identities=17%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             HhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec
Q 027913          105 KSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA  183 (217)
Q Consensus       105 ~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~  183 (217)
                      .+.+++.....+.+++++. .++.+|||||||+|.++.++++..+.+|+|+|+|+++++.|++++.+.++. .++.+...
T Consensus        31 ~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~-~~~~~~~~  109 (280)
T d2fk8a1          31 LTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTN-RSRQVLLQ  109 (280)
T ss_dssp             CCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCS-SCEEEEES
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccc-cchhhhhh
Confidence            3455555667777888887 789999999999999999988776789999999999999999999999986 67888888


Q ss_pred             ccccccCCCCceeEEEecccccccCCh--hhhhcC
Q 027913          184 VGEAIPVSDASVDAVVGTLVLCSVKDV--DMTLQA  216 (217)
Q Consensus       184 d~~~l~~~~~sfD~V~~~~~l~~~~d~--~~~L~e  216 (217)
                      |...++   ++||.|++..+++|+.+.  ..+|++
T Consensus       110 d~~~~~---~~fD~i~si~~~eh~~~~~~~~~f~~  141 (280)
T d2fk8a1         110 GWEDFA---EPVDRIVSIEAFEHFGHENYDDFFKR  141 (280)
T ss_dssp             CGGGCC---CCCSEEEEESCGGGTCGGGHHHHHHH
T ss_pred             hhhhhc---cchhhhhHhhHHHHhhhhhHHHHHHH
Confidence            887663   689999999999999754  555553

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.2e-19  Score=135.32  Aligned_cols=91  Identities=18%  Similarity=0.052  Sum_probs=79.6

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++.+|||||||+|.++..+++..+.+|+|||+|++|++.|++++...+.  .+++|+++|++++++++++||+|++.++
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~--~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG--GEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc--cccccccccccccccccccccccccccc
Confidence            35678999999999999988766667899999999999999999877765  5789999999999988899999999999


Q ss_pred             ccccCChh--hhhcC
Q 027913          204 LCSVKDVD--MTLQA  216 (217)
Q Consensus       204 l~~~~d~~--~~L~e  216 (217)
                      ++|+++++  ++|++
T Consensus       137 l~h~~~~~~~~~l~~  151 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRR  151 (222)
T ss_dssp             GGGSCHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHH
Confidence            99998764  45543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.74  E-value=1.5e-17  Score=129.62  Aligned_cols=99  Identities=14%  Similarity=0.095  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccc
Q 027913          107 YEAEVAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGE  186 (217)
Q Consensus       107 ~~~~~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  186 (217)
                      |.. +......++.....++++|||||||+|.++..+++ .+.+++|+|+|++|++.|++++...++   +++|+++|+.
T Consensus        20 y~~-~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~   94 (246)
T d1y8ca_          20 YKK-WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDIS   94 (246)
T ss_dssp             HHH-HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGG
T ss_pred             HHH-HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHH-hCCccEeeccchhhhhhccccccccCc---cceeeccchh
Confidence            444 33344444444445678999999999999999985 467899999999999999999988874   7899999999


Q ss_pred             cccCCCCceeEEEec-ccccccCChh
Q 027913          187 AIPVSDASVDAVVGT-LVLCSVKDVD  211 (217)
Q Consensus       187 ~l~~~~~sfD~V~~~-~~l~~~~d~~  211 (217)
                      .++++ ++||+|+|. .+++|+.+++
T Consensus        95 ~~~~~-~~fD~i~~~~~~~~~~~~~~  119 (246)
T d1y8ca_          95 NLNIN-RKFDLITCCLDSTNYIIDSD  119 (246)
T ss_dssp             GCCCS-CCEEEEEECTTGGGGCCSHH
T ss_pred             hhccc-ccccccceeeeeeeccCCHH
Confidence            99864 689999986 5788887554

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=3.8e-19  Score=141.57  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=94.9

Q ss_pred             hhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913          103 SMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      ...+++++.....+.+++++. .++.+|||||||+|.++.++++..+.+|+||++|+++++.|++++.+.++. .++++.
T Consensus        39 ~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~-~~v~~~  117 (285)
T d1kpga_          39 DDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENL-RSKRVL  117 (285)
T ss_dssp             TTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCC-SCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhh-hhhHHH
Confidence            344566667777888888887 899999999999999999999877899999999999999999999998887 799999


Q ss_pred             ecccccccCCCCceeEEEecccccccCC--hhhhhcC
Q 027913          182 QAVGEAIPVSDASVDAVVGTLVLCSVKD--VDMTLQA  216 (217)
Q Consensus       182 ~~d~~~l~~~~~sfD~V~~~~~l~~~~d--~~~~L~e  216 (217)
                      .+|...++   ++||.|++..+++|+..  ...++++
T Consensus       118 ~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~  151 (285)
T d1kpga_         118 LAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSL  151 (285)
T ss_dssp             ESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHH
T ss_pred             Hhhhhccc---ccccceeeehhhhhcCchhHHHHHHH
Confidence            99998875   68999999999999954  3666654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=5.2e-19  Score=141.14  Aligned_cols=104  Identities=19%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913          103 SMKSYEAEVAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       103 ~~~~~~~~~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      ...+++++.....+.+++++. .++.+|||||||+|.++.++++..+.+|+|+++|+++++.+++++...++. .++.+.
T Consensus        38 ~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~-~~v~~~  116 (291)
T d1kpia_          38 PDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKEVR  116 (291)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCS-SCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccc-hhhhhh
Confidence            344566667778888888888 889999999999999999998777889999999999999999999999986 688888


Q ss_pred             ecccccccCCCCceeEEEecccccccCCh
Q 027913          182 QAVGEAIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       182 ~~d~~~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                      ..|..   +.+++||.|++..+|+|+.++
T Consensus       117 ~~d~~---~~~~~fD~i~sie~~eH~~~~  142 (291)
T d1kpia_         117 IQGWE---EFDEPVDRIVSLGAFEHFADG  142 (291)
T ss_dssp             ECCGG---GCCCCCSEEEEESCGGGTTCC
T ss_pred             hhccc---ccccccceEeechhHHhcchh
Confidence            88864   346899999999999999874

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.73  E-value=5.3e-18  Score=128.15  Aligned_cols=87  Identities=22%  Similarity=0.270  Sum_probs=76.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+++|||||||+|..+.++++ .+.+|+|+|+|+.|++.++++....++  +++++...|+..+++ +++||+|++..++
T Consensus        30 ~~grvLDiGcG~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~d~~~~~~-~~~fD~I~~~~~~  105 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGL--DNLQTDLVDLNTLTF-DGEYDFILSTVVM  105 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTC--TTEEEEECCTTTCCC-CCCEEEEEEESCG
T ss_pred             CCCcEEEECCCCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccc--cchhhhheecccccc-cccccEEEEeeee
Confidence            667999999999999999985 467999999999999999999998888  589999999999876 5789999999999


Q ss_pred             cccCChh--hhhc
Q 027913          205 CSVKDVD--MTLQ  215 (217)
Q Consensus       205 ~~~~d~~--~~L~  215 (217)
                      +|+++.+  ++|+
T Consensus       106 ~~~~~~~~~~~l~  118 (198)
T d2i6ga1         106 MFLEAQTIPGLIA  118 (198)
T ss_dssp             GGSCTTHHHHHHH
T ss_pred             ecCCHHHHHHHHH
Confidence            9997653  3444

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.72  E-value=6.9e-18  Score=130.02  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=74.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      .+++|||||||+|.++..++ ..+.+|+|||+|++|++.|+++..      .++.++.+|++.+++ +++||+|++..+|
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~------~~~~~~~~~~~~~~~-~~~fD~I~~~~vl   91 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQ-EHFNDITCVEASEEAISHAQGRLK------DGITYIHSRFEDAQL-PRRYDNIVLTHVL   91 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSC------SCEEEEESCGGGCCC-SSCEEEEEEESCG
T ss_pred             CCCcEEEEeCCCcHHHHHHH-HcCCeEEEEeCcHHHhhhhhcccc------ccccccccccccccc-cccccccccccee
Confidence            77899999999999999997 446789999999999999997642      478999999999876 4789999999999


Q ss_pred             cccCChhhhhcC
Q 027913          205 CSVKDVDMTLQA  216 (217)
Q Consensus       205 ~~~~d~~~~L~e  216 (217)
                      +|++|+..+|++
T Consensus        92 eh~~d~~~~l~~  103 (225)
T d2p7ia1          92 EHIDDPVALLKR  103 (225)
T ss_dssp             GGCSSHHHHHHH
T ss_pred             EecCCHHHHHHH
Confidence            999999998765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.71  E-value=1.6e-17  Score=130.05  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             HHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC-CCCcee
Q 027913          118 LFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV-SDASVD  196 (217)
Q Consensus       118 i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~-~~~sfD  196 (217)
                      +++.+..++.+|||||||+|..+..+++....+|+|+|+|++|++.|++++...+.. .++.|.++|+...++ .+++||
T Consensus        17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~-~~v~f~~~D~~~~~~~~~~~fD   95 (252)
T d1ri5a_          17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR-FKVFFRAQDSYGRHMDLGKEFD   95 (252)
T ss_dssp             HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCS-SEEEEEESCTTTSCCCCSSCEE
T ss_pred             HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCC-cceEEEEcchhhhcccccccce
Confidence            455555688999999999999999998766668999999999999999998877654 589999999987765 467899


Q ss_pred             EEEecccccccCChh
Q 027913          197 AVVGTLVLCSVKDVD  211 (217)
Q Consensus       197 ~V~~~~~l~~~~d~~  211 (217)
                      +|++.+++||+.+++
T Consensus        96 ~V~~~~~l~~~~~~~  110 (252)
T d1ri5a_          96 VISSQFSFHYAFSTS  110 (252)
T ss_dssp             EEEEESCGGGGGSSH
T ss_pred             EEEEcceeeecCCCH
Confidence            999999999986543

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.71  E-value=1.3e-17  Score=130.73  Aligned_cols=100  Identities=17%  Similarity=0.154  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      ...+.+++.+. .+..+|||+|||+|.++..++......|++||+|+.|++.|++++...    .+++|+++|+++++++
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~d~~~~~~~  155 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM----PVGKFILASMETATLP  155 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS----SEEEEEESCGGGCCCC
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc----ccceeEEccccccccC
Confidence            34455666665 567899999999999999887655568999999999999999886432    4689999999999998


Q ss_pred             CCceeEEEecccccccCChh--hhhcC
Q 027913          192 DASVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                      +++||+|++.++++|++|++  .+|++
T Consensus       156 ~~~fD~I~~~~vl~hl~d~d~~~~l~~  182 (254)
T d1xtpa_         156 PNTYDLIVIQWTAIYLTDADFVKFFKH  182 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             CCccceEEeeccccccchhhhHHHHHH
Confidence            99999999999999998764  55553

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=2.1e-17  Score=131.46  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|.++..+++.  .+.+|+|+|+|+.|++.|+++....+.   +++|+++|++.++++ ++||+|++.
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~---~~~f~~~d~~~~~~~-~~fD~v~~~  101 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELN-DKYDIAICH  101 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCS-SCEEEEEEE
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc---ccccccccccccccc-CCceEEEEe
Confidence            47889999999999999988863  357899999999999999999877663   789999999999876 579999999


Q ss_pred             ccccccCChhhhhcC
Q 027913          202 LVLCSVKDVDMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e  216 (217)
                      .+++|++|+..+|++
T Consensus       102 ~~l~~~~d~~~~l~~  116 (281)
T d2gh1a1         102 AFLLHMTTPETMLQK  116 (281)
T ss_dssp             SCGGGCSSHHHHHHH
T ss_pred             hhhhcCCCHHHHHHH
Confidence            999999999998875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=3.2e-16  Score=117.15  Aligned_cols=96  Identities=16%  Similarity=0.158  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC
Q 027913          113 GYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       113 ~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~  191 (217)
                      +.+..++..+. .++.+|||||||+|.++..+++ .+.+|+|+|+++++++.|+++++..++. ++++++++|+.+.+.+
T Consensus        20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl~-~~v~~~~gda~~~~~~   97 (186)
T d1l3ia_          20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLG-DNVTLMEGDAPEALCK   97 (186)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCC-TTEEEEESCHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCCEEEEEECCeEcccccccc-cceEEEEecCCHHHHHHHHHHHHHcCCC-cceEEEECchhhcccc
Confidence            34445566665 6899999999999999999885 4679999999999999999999999986 6999999999988878


Q ss_pred             CCceeEEEecccccccCCh
Q 027913          192 DASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~  210 (217)
                      ...||+|++....+++.+.
T Consensus        98 ~~~~D~v~~~~~~~~~~~~  116 (186)
T d1l3ia_          98 IPDIDIAVVGGSGGELQEI  116 (186)
T ss_dssp             SCCEEEEEESCCTTCHHHH
T ss_pred             cCCcCEEEEeCccccchHH
Confidence            8899999998877766543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.59  E-value=3.7e-16  Score=116.98  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC----------CCCeEEEecccc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP----------LTNFKFLQAVGE  186 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~  186 (217)
                      ++..+. .++.+|||+|||+|..+.+|++ .|.+|+|+|+|+.|++.|+++++..+..          ..++.|+.+|+.
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   90 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGKSQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFF   90 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCS
T ss_pred             HHHHcCCCCCCEEEEecCcCCHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccc
Confidence            344444 5889999999999999999995 4789999999999999999998553210          135678899988


Q ss_pred             ccc-CCCCceeEEEecccccccCC
Q 027913          187 AIP-VSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       187 ~l~-~~~~sfD~V~~~~~l~~~~d  209 (217)
                      .++ .....||+|++..+++|+++
T Consensus        91 ~l~~~~~~~~D~i~~~~~l~~l~~  114 (201)
T d1pjza_          91 ALTARDIGHCAAFYDRAAMIALPA  114 (201)
T ss_dssp             SSTHHHHHSEEEEEEESCGGGSCH
T ss_pred             ccccccccceeEEEEEeeeEecch
Confidence            876 34568999999999999975

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=5.2e-15  Score=112.77  Aligned_cols=92  Identities=24%  Similarity=0.244  Sum_probs=80.1

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      .++++.+. .++.+|||||||+|+++..+++  .....|+++|+++++++.|++++...++  .++.++++|....+..+
T Consensus        65 a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~--~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          65 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI--ENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGG
T ss_pred             HHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc--cccccccCchHHccccc
Confidence            34566665 6899999999999999988876  4556899999999999999999998888  68999999998877777


Q ss_pred             CceeEEEecccccccCC
Q 027913          193 ASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d  209 (217)
                      ++||+|++..+++++++
T Consensus       143 ~~fD~I~~~~~~~~~p~  159 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPE  159 (213)
T ss_dssp             CCEEEEEECSBBSCCCH
T ss_pred             cchhhhhhhccHHHhHH
Confidence            89999999999999875

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.58  E-value=3.8e-15  Score=111.92  Aligned_cols=96  Identities=19%  Similarity=0.190  Sum_probs=79.0

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|.++..+++ .+.+++++|+|+.+++.+++++...++...+++++.+|..+ ++++++||
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~~~fD  121 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKDRKYN  121 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTTSCEE
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhccCCce
Confidence            444454 5789999999999999998875 46789999999999999999999888865679999999876 56788999


Q ss_pred             EEEecccccccCCh-hhhhc
Q 027913          197 AVVGTLVLCSVKDV-DMTLQ  215 (217)
Q Consensus       197 ~V~~~~~l~~~~d~-~~~L~  215 (217)
                      +|++..++|+..+. +.+++
T Consensus       122 ~Ii~~~p~~~~~~~~~~~l~  141 (194)
T d1dusa_         122 KIITNPPIRAGKEVLHRIIE  141 (194)
T ss_dssp             EEEECCCSTTCHHHHHHHHH
T ss_pred             EEEEcccEEecchhhhhHHH
Confidence            99999988876653 34443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=116.24  Aligned_cols=94  Identities=13%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             HhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc--cCCCCceeEE
Q 027913          121 NLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI--PVSDASVDAV  198 (217)
Q Consensus       121 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l--~~~~~sfD~V  198 (217)
                      .+..++++|||||||+|..+.++++..+.+++|||+|+.|++.|+++....+   .++.++..|+..+  ++++++||.|
T Consensus        49 ~~~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~fD~i  125 (229)
T d1zx0a1          49 AASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT---HKVIPLKGLWEDVAPTLPDGHFDGI  125 (229)
T ss_dssp             HHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS---SEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             hhccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc---cccccccccccccccccccccccce
Confidence            3334788999999999999999987666789999999999999999987665   4678888887654  5778899988


Q ss_pred             E-----ecccccccCChhhhhcCC
Q 027913          199 V-----GTLVLCSVKDVDMTLQAP  217 (217)
Q Consensus       199 ~-----~~~~l~~~~d~~~~L~e~  217 (217)
                      +     +.+.++|+.++..+++++
T Consensus       126 ~fD~~~~~~~~~~~~~~~~~~~~~  149 (229)
T d1zx0a1         126 LYDTYPLSEETWHTHQFNFIKNHA  149 (229)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTH
T ss_pred             eecccccccccccccCHHHHHHHH
Confidence            7     578888998888888763

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4e-15  Score=114.55  Aligned_cols=85  Identities=14%  Similarity=0.082  Sum_probs=71.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC---------------CCCCeEEEecccccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL---------------PLTNFKFLQAVGEAI  188 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~v~~~~~d~~~l  188 (217)
                      .++.+|||+|||+|..+.+|++ .|.+|+|||+|+.+++.|+++......               ...+++++++|+..+
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            4788999999999999999984 578999999999999999987643210               014789999999888


Q ss_pred             c-CCCCceeEEEecccccccCC
Q 027913          189 P-VSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       189 ~-~~~~sfD~V~~~~~l~~~~d  209 (217)
                      + ...+.||+|+...+|+|++.
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~~  144 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAINP  144 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSCG
T ss_pred             cccccCceeEEEEEEEEEeccc
Confidence            5 56789999999999999964

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-15  Score=117.20  Aligned_cols=92  Identities=18%  Similarity=0.127  Sum_probs=68.7

Q ss_pred             CCCeEEEECCcCCcchHhhhh-----CC--CCeEEEecCCHHHHHHHHHHHHHcC-CCCCCeEEEecccccc------cC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-----DT--DVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEAI------PV  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-----~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~l------~~  190 (217)
                      +..+|||||||+|.++..+++     .+  ...++|||+|+.|++.+++++.+.. +...++.+...+++.+      +.
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            334799999999998776654     12  3468999999999999999985532 2111234455555432      46


Q ss_pred             CCCceeEEEecccccccCChhhhhcC
Q 027913          191 SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++++||+|++.++|||++|+..+|++
T Consensus       120 ~~~~fD~I~~~~~l~~~~d~~~~l~~  145 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYVKDIPATLKF  145 (280)
T ss_dssp             SCCCEEEEEEESCGGGCSCHHHHHHH
T ss_pred             CCCceeEEEEccceecCCCHHHHHHH
Confidence            78899999999999999999998865

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=3.1e-14  Score=111.30  Aligned_cols=96  Identities=20%  Similarity=0.167  Sum_probs=80.1

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcC-CCCCCeEEEecccccccCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAG-LPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~~~~v~~~~~d~~~l~~~  191 (217)
                      ..++..+. .++.+|||+|||+|.++..+++  .+..+|+++|+++++++.|+++++..+ ....++.++++|+.+.+++
T Consensus        86 s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~  165 (264)
T d1i9ga_          86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELP  165 (264)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCC
T ss_pred             HHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccccc
Confidence            33555555 6999999999999999999987  567799999999999999999987642 2236999999999999999


Q ss_pred             CCceeEEEecccccccCChhhhhcC
Q 027913          192 DASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +++||.|++     ++++|..+|.+
T Consensus       166 ~~~fDaV~l-----dlp~P~~~l~~  185 (264)
T d1i9ga_         166 DGSVDRAVL-----DMLAPWEVLDA  185 (264)
T ss_dssp             TTCEEEEEE-----ESSCGGGGHHH
T ss_pred             CCCcceEEE-----ecCCHHHHHHH
Confidence            999999974     67888877654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8e-15  Score=116.81  Aligned_cols=85  Identities=21%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCC--CCeEEEeccccccc---CCCCceeEEE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPL--TNFKFLQAVGEAIP---VSDASVDAVV  199 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~v~~~~~d~~~l~---~~~~sfD~V~  199 (217)
                      .+++|||||||+|.++..+++. +.+|+|+|+|++|++.|+++....+...  .+..+..+++..++   ...++||+|+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            6789999999999999999854 6799999999999999999987765421  12344455544332   2346899999


Q ss_pred             ecc-cccccCCh
Q 027913          200 GTL-VLCSVKDV  210 (217)
Q Consensus       200 ~~~-~l~~~~d~  210 (217)
                      +.+ +++|++++
T Consensus       135 ~~~~~~~~~~~~  146 (292)
T d1xvaa_         135 CLGNSFAHLPDS  146 (292)
T ss_dssp             ECSSCGGGSCCT
T ss_pred             EecCchhhcCCc
Confidence            864 89998764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.48  E-value=5.3e-14  Score=109.79  Aligned_cols=97  Identities=18%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. ...++|||||||+|.++..+++ .++.+++++|+ +++++.+++++.+.++. .+++++.+|+.+. .+ .
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~-~rv~~~~~D~~~~-~~-~  145 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLS-DRVDVVEGDFFEP-LP-R  145 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCT-TTEEEEECCTTSC-CS-S
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcc-cchhhccccchhh-cc-c
Confidence            34455554 5668999999999999999986 66789999998 67999999999998876 7899999998653 23 5


Q ss_pred             ceeEEEecccccccCChh--hhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVD--MTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~--~~L~e  216 (217)
                      +||+|++.++|||+++.+  .+|++
T Consensus       146 ~~D~v~~~~vlh~~~d~~~~~~L~~  170 (253)
T d1tw3a2         146 KADAIILSFVLLNWPDHDAVRILTR  170 (253)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred             chhheeeccccccCCchhhHHHHHH
Confidence            799999999999998764  44543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.47  E-value=1.5e-14  Score=112.85  Aligned_cols=86  Identities=23%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             HHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEE
Q 027913          119 FDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       119 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      +.....++++|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|+++++..++   +++++++|+... ++.++||+|
T Consensus       114 l~~~~~~g~~VLDiGcGsG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~---~~~~~~~d~~~~-~~~~~fD~V  188 (254)
T d2nxca1         114 LARHLRPGDKVLDLGTGSGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGV---RPRFLEGSLEAA-LPFGPFDLL  188 (254)
T ss_dssp             HHHHCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTC---CCEEEESCHHHH-GGGCCEEEE
T ss_pred             HHhhcCccCEEEEcccchhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCC---ceeEEecccccc-ccccccchh
Confidence            344445899999999999999988774 567899999999999999999999886   568899998764 556899999


Q ss_pred             EecccccccCC
Q 027913          199 VGTLVLCSVKD  209 (217)
Q Consensus       199 ~~~~~l~~~~d  209 (217)
                      +++...+.+.+
T Consensus       189 ~ani~~~~l~~  199 (254)
T d2nxca1         189 VANLYAELHAA  199 (254)
T ss_dssp             EEECCHHHHHH
T ss_pred             hhccccccHHH
Confidence            99876665543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7e-15  Score=114.66  Aligned_cols=86  Identities=13%  Similarity=0.027  Sum_probs=63.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCC--------------------------
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTN--------------------------  177 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~--------------------------  177 (217)
                      .++.+|||||||+|.++..++...+.+|+|+|+|+.|++.|++++++.......                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            467799999999999887777555568999999999999999998765431100                          


Q ss_pred             -e-EEEec----ccccccCCCCceeEEEecccccccCC
Q 027913          178 -F-KFLQA----VGEAIPVSDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       178 -v-~~~~~----d~~~l~~~~~sfD~V~~~~~l~~~~d  209 (217)
                       + .....    +....++++++||+|++.+++||+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~  167 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC  167 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcc
Confidence             0 11111    11223567889999999999999963

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.6e-13  Score=105.08  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCC---CCCeEEEecccccccCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLP---LTNFKFLQAVGEAIPVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~v~~~~~d~~~l~~~~~sfD~V  198 (217)
                      .++.+|||||||+|+.+..+++  .+..+|+++|+++++++.|++++++.++.   ..++.++.+|....+.++++||+|
T Consensus        75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            5889999999999999887775  45678999999999999999999776532   257899999998887778899999


Q ss_pred             EecccccccCC
Q 027913          199 VGTLVLCSVKD  209 (217)
Q Consensus       199 ~~~~~l~~~~d  209 (217)
                      ++..+++++++
T Consensus       155 ~~~~~~~~ip~  165 (224)
T d1i1na_         155 HVGAAAPVVPQ  165 (224)
T ss_dssp             EECSBBSSCCH
T ss_pred             hhhcchhhcCH
Confidence            99999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.44  E-value=1.8e-13  Score=106.25  Aligned_cols=93  Identities=19%  Similarity=0.149  Sum_probs=73.2

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..++..+. .++.+|||+|||+|.++..+++  .+..+|+++|.++++++.|++++++.+.. .++++..+|+.+. +++
T Consensus        75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~-~nv~~~~~Di~~~-~~~  152 (250)
T d1yb2a1          75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADF-ISD  152 (250)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTC-CCS
T ss_pred             HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCC-CceEEEEeeeecc-ccc
Confidence            34556665 7899999999999999999886  46679999999999999999999876543 7999999999876 567


Q ss_pred             CceeEEEecccccccCChhhhhc
Q 027913          193 ASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      +.||+|++     +++++..+|.
T Consensus       153 ~~fD~V~l-----d~p~p~~~l~  170 (250)
T d1yb2a1         153 QMYDAVIA-----DIPDPWNHVQ  170 (250)
T ss_dssp             CCEEEEEE-----CCSCGGGSHH
T ss_pred             ceeeeeee-----cCCchHHHHH
Confidence            89999985     4666666554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=5.7e-13  Score=107.63  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=72.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++++|||||||+|.++..+++....+|+++|.|+ +++.|++..+..++. .++.++.+|++++++++++||+|++..+.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~-~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCcc-ccceEEEeehhhccCcccceeEEEEEecc
Confidence            8899999999999999888876667999999996 778999999888876 78999999999999999999999997777


Q ss_pred             cccC
Q 027913          205 CSVK  208 (217)
Q Consensus       205 ~~~~  208 (217)
                      +++.
T Consensus       116 ~~~~  119 (328)
T d1g6q1_         116 YFLL  119 (328)
T ss_dssp             TTBS
T ss_pred             eeec
Confidence            6554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.42  E-value=6.8e-13  Score=100.04  Aligned_cols=83  Identities=17%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      ....|||||||+|.++..+++ .+...++|+|+++.++..+.+++.+.++  .|+.++.+|+..+.  ++++++|.|++.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l--~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA--QNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC--SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc--cCchhcccchhhhhcccCchhhhccccc
Confidence            445799999999999999986 7788999999999999999999999998  69999999998875  889999999998


Q ss_pred             ccccccCC
Q 027913          202 LVLCSVKD  209 (217)
Q Consensus       202 ~~l~~~~d  209 (217)
                      +...|...
T Consensus       107 fp~P~~k~  114 (204)
T d2fcaa1         107 FSDPWPKK  114 (204)
T ss_dssp             SCCCCCSG
T ss_pred             cccccchh
Confidence            88877654

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.41  E-value=5e-13  Score=101.45  Aligned_cols=90  Identities=17%  Similarity=0.236  Sum_probs=77.8

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|+.+..+++-.+.+|+++|.++++++.|++++.+.++  .|+.++.+|........+.||
T Consensus        70 ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~--~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV--KNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC--CSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC--ceeEEEECccccCCcccCcce
Confidence            445555 58899999999999999888764456799999999999999999999998  699999999988655678999


Q ss_pred             EEEecccccccCC
Q 027913          197 AVVGTLVLCSVKD  209 (217)
Q Consensus       197 ~V~~~~~l~~~~d  209 (217)
                      .|++..++.++++
T Consensus       148 ~Iiv~~a~~~ip~  160 (215)
T d1jg1a_         148 VIIVTAGAPKIPE  160 (215)
T ss_dssp             EEEECSBBSSCCH
T ss_pred             eEEeecccccCCH
Confidence            9999999998864

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.41  E-value=2.4e-13  Score=103.06  Aligned_cols=89  Identities=12%  Similarity=0.021  Sum_probs=69.5

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe-c
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG-T  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~-~  201 (217)
                      .|+.+|||||||+|..+..+++ .+..+|+|+|+|+.|++.++++++..    .++.++..|....+.....+|.|.. .
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~----~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER----NNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC----SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc----CCceEEEeeccCccccccccceEEEEE
Confidence            6889999999999999999886 34468999999999999999998775    4899999999887655554444432 2


Q ss_pred             ccccccCChhhhhcC
Q 027913          202 LVLCSVKDVDMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e  216 (217)
                      ..+.|..+...+|++
T Consensus       131 ~~~~~~~~~~~~l~~  145 (209)
T d1nt2a_         131 QDIAQKNQIEILKAN  145 (209)
T ss_dssp             ECCCSTTHHHHHHHH
T ss_pred             ecccChhhHHHHHHH
Confidence            346666666666654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-13  Score=111.64  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHH-------cCCCCCCeEEE
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVA-------AGLPLTNFKFL  181 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~v~~~  181 (217)
                      ......++++.+. .++.+|||||||+|.++..+++ .+..+++|||+++.+++.|++..++       .|....+++|+
T Consensus       136 ~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~  215 (328)
T d1nw3a_         136 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  215 (328)
T ss_dssp             CHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence            4456677788876 7889999999999999998876 4456899999999999999877654       34444689999


Q ss_pred             ecccccccCCCCce--eEEEecccccccCChhhhhcC
Q 027913          182 QAVGEAIPVSDASV--DAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       182 ~~d~~~l~~~~~sf--D~V~~~~~l~~~~d~~~~L~e  216 (217)
                      ++|+.++++.+..+  |+|++ +.+.|.+++...|+|
T Consensus       216 ~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e  251 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKE  251 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHH
T ss_pred             ECcccccccccccCcceEEEE-cceecchHHHHHHHH
Confidence            99999998776655  55554 566777887777665

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-12  Score=103.99  Aligned_cols=83  Identities=23%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      .++++|||||||+|.++..+++....+|+++|.|+.++. +++.....++. .++.++.+|++++++++.+||+|++..+
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~-~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCC-ccceEEEeeHHHhcCccccceEEEEeee
Confidence            478999999999999999888765679999999998764 56666666665 7899999999999988899999999877


Q ss_pred             ccccC
Q 027913          204 LCSVK  208 (217)
Q Consensus       204 l~~~~  208 (217)
                      .+++.
T Consensus       112 ~~~~~  116 (311)
T d2fyta1         112 GYFLL  116 (311)
T ss_dssp             BTTBT
T ss_pred             eeecc
Confidence            76654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.39  E-value=5.2e-13  Score=101.95  Aligned_cols=87  Identities=29%  Similarity=0.271  Sum_probs=72.7

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCcee
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVD  196 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD  196 (217)
                      +++.+. .++.+|||||||+|+++..+++ .+.+|+++|+++++++.|++++...    .|+.++.+|......+.++||
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~-l~~~V~aiE~~~~~~~~A~~~~~~~----~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAE-IVDKVVSVEINEKMYNYASKLLSYY----NNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHH-HSSEEEEEESCHHHHHHHHHHHTTC----SSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHH-HhcccccccccHHHHHHHHHHHhcc----cccccccCchhhcchhhhhHH
Confidence            455555 6889999999999999988874 4678999999999999999886532    589999999876544567899


Q ss_pred             EEEecccccccCC
Q 027913          197 AVVGTLVLCSVKD  209 (217)
Q Consensus       197 ~V~~~~~l~~~~d  209 (217)
                      +|++..+++++++
T Consensus       137 ~Iiv~~a~~~ip~  149 (224)
T d1vbfa_         137 RVVVWATAPTLLC  149 (224)
T ss_dssp             EEEESSBBSSCCH
T ss_pred             HHHhhcchhhhhH
Confidence            9999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.39  E-value=7.6e-13  Score=103.30  Aligned_cols=92  Identities=22%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             HHHHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          116 SQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       116 ~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..+++.+. ....+|||||||+|.++..+++ .+..+++++|+ +++++.+++++.+.++. +++.++.+|... +.+ .
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~-~ri~~~~~d~~~-~~p-~  146 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLA-DRVTVAEGDFFK-PLP-V  146 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCT-TTEEEEECCTTS-CCS-C
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCc-ceeeeeeeeccc-ccc-c
Confidence            34455544 4567999999999999999996 66789999998 78999999999988876 689999999865 444 4


Q ss_pred             ceeEEEecccccccCChh
Q 027913          194 SVDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~  211 (217)
                      .||+|++.++||++++.+
T Consensus       147 ~~D~v~~~~vLh~~~d~~  164 (256)
T d1qzza2         147 TADVVLLSFVLLNWSDED  164 (256)
T ss_dssp             CEEEEEEESCGGGSCHHH
T ss_pred             cchhhhccccccccCcHH
Confidence            599999999999998753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.5e-12  Score=104.54  Aligned_cols=82  Identities=22%  Similarity=0.287  Sum_probs=70.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLVL  204 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  204 (217)
                      ++++|||||||+|.++..+++....+|+|+|.|+. ...+++.++..++. .++.++.+|+++++++.++||+|++..+.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~-~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCc-cccceEeccHHHcccccceeEEEeeeeee
Confidence            78999999999999998888765578999999975 57777778888876 78999999999999998999999997776


Q ss_pred             cccC
Q 027913          205 CSVK  208 (217)
Q Consensus       205 ~~~~  208 (217)
                      +++.
T Consensus       111 ~~l~  114 (316)
T d1oria_         111 YCLF  114 (316)
T ss_dssp             BTBT
T ss_pred             eeec
Confidence            6653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.37  E-value=4e-13  Score=103.19  Aligned_cols=89  Identities=10%  Similarity=0.075  Sum_probs=74.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~~  201 (217)
                      .++.+|||||||+|..+..+++ .++..|+|+|+|+.|++.+++++...    .++.++..|....+ +.+..+|++++.
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~----~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER----ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC----TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh----cccceEEEeeccCcccccccceeEEee
Confidence            6889999999999999999987 45679999999999999999886544    47888888887664 566788888888


Q ss_pred             ccccccCChhhhhcC
Q 027913          202 LVLCSVKDVDMTLQA  216 (217)
Q Consensus       202 ~~l~~~~d~~~~L~e  216 (217)
                      ..+++..+++.++++
T Consensus       149 ~~~~~~~~~~~~l~~  163 (230)
T d1g8sa_         149 EDVAQPNQAEILIKN  163 (230)
T ss_dssp             ECCCSTTHHHHHHHH
T ss_pred             ccccchHHHHHHHHH
Confidence            888888888877754

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=2.4e-12  Score=100.97  Aligned_cols=87  Identities=21%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ++...+......+.+|||+|||+|-.+..++. .+..+++++|+|+.+++.|++++...++  .+++|+++|+.. ++++
T Consensus        97 lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~--~~v~~~~~d~~~-~~~~  173 (274)
T d2b3ta1          97 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI--KNIHILQSDWFS-ALAG  173 (274)
T ss_dssp             HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--CSEEEECCSTTG-GGTT
T ss_pred             hhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc--ccceeeeccccc-ccCC
Confidence            34444555545678999999999999988875 6778999999999999999999999998  589999999866 3566


Q ss_pred             CceeEEEeccc
Q 027913          193 ASVDAVVGTLV  203 (217)
Q Consensus       193 ~sfD~V~~~~~  203 (217)
                      ++||+|+++--
T Consensus       174 ~~fDlIvsNPP  184 (274)
T d2b3ta1         174 QQFAMIVSNPP  184 (274)
T ss_dssp             CCEEEEEECCC
T ss_pred             CceeEEEecch
Confidence            79999999743

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=2.2e-12  Score=101.01  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=77.3

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      .++..+. .++.+|||+|||+|.++..+++  .++.+|+++|+++++++.|+++++..++. .++.+...|+... ++..
T Consensus        94 ~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~-~~v~~~~~d~~~~-~~~~  171 (266)
T d1o54a_          94 FIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI-ERVTIKVRDISEG-FDEK  171 (266)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG-GGEEEECCCGGGC-CSCC
T ss_pred             HHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc-cCcEEEecccccc-cccc
Confidence            3566665 7999999999999999999986  45679999999999999999999998875 6889998887543 5667


Q ss_pred             ceeEEEecccccccCChhhhhcC
Q 027913          194 SVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       194 sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      .||.|+     +++++|..+|++
T Consensus       172 ~~D~V~-----~d~p~p~~~l~~  189 (266)
T d1o54a_         172 DVDALF-----LDVPDPWNYIDK  189 (266)
T ss_dssp             SEEEEE-----ECCSCGGGTHHH
T ss_pred             ceeeeE-----ecCCCHHHHHHH
Confidence            899885     578888887764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=5e-12  Score=95.21  Aligned_cols=82  Identities=22%  Similarity=0.343  Sum_probs=71.8

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--CCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--VSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~sfD~V~~~  201 (217)
                      ....|||||||+|.++..+|+ .+...++|+|+++.++..|.+++.+.++  .|+.++.+|+..+.  ++++++|.|++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l--~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV--PNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC--SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc--ccceeeecCHHHHhhhccCCceehhccc
Confidence            445799999999999999986 6788999999999999999999999998  69999999998875  788999999987


Q ss_pred             ccccccC
Q 027913          202 LVLCSVK  208 (217)
Q Consensus       202 ~~l~~~~  208 (217)
                      +.-.+..
T Consensus       109 fPdPw~K  115 (204)
T d1yzha1         109 FSDPWPK  115 (204)
T ss_dssp             SCCCCCS
T ss_pred             ccccccc
Confidence            7655443

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.33  E-value=3.8e-12  Score=95.06  Aligned_cols=70  Identities=16%  Similarity=0.066  Sum_probs=59.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      -.+++|||+|||+|.++..++.....+|+|+|+++.+++.|++++       .+++++++|+..++   +.||+|+++--
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-------~~~~~~~~D~~~l~---~~fD~Vi~NPP  116 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-------GGVNFMVADVSEIS---GKYDTWIMNPP  116 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-------TTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-------ccccEEEEehhhcC---CcceEEEeCcc
Confidence            378999999999999887776555568999999999999999875       57899999998874   68999998743

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.9e-13  Score=103.30  Aligned_cols=92  Identities=13%  Similarity=0.020  Sum_probs=65.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCC---------------------------
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLT---------------------------  176 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~---------------------------  176 (217)
                      ..+.+|||||||+|.+....+.....+|+|+|+|+.|++.+++++.......+                           
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            46789999999999877655545556899999999999999988754331100                           


Q ss_pred             -CeEEEeccccc------ccCCCCceeEEEecccccccC----Chhhhhc
Q 027913          177 -NFKFLQAVGEA------IPVSDASVDAVVGTLVLCSVK----DVDMTLQ  215 (217)
Q Consensus       177 -~v~~~~~d~~~------l~~~~~sfD~V~~~~~l~~~~----d~~~~L~  215 (217)
                       ....+..|+..      .+...++||+|++.+++||+.    ++..+|+
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~  182 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALD  182 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHH
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHH
Confidence             11234445533      234567899999999999995    3445544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-12  Score=101.06  Aligned_cols=93  Identities=16%  Similarity=0.226  Sum_probs=70.2

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHc----------CCCCCCeEEEec
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAA----------GLPLTNFKFLQA  183 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~v~~~~~  183 (217)
                      .|+..+. .++.+|||+|||+|.++..+++  .+..+|+++|+++++++.|+++++..          ++ ..++.+...
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~-~~nv~~~~~  167 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW-PDNVDFIHK  167 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC-CCCEEEEES
T ss_pred             HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc-ccceeEEec
Confidence            3555555 6999999999999999999987  46679999999999999999998753          22 268999999


Q ss_pred             cccccc--CCCCceeEEEecccccccCChhhhhc
Q 027913          184 VGEAIP--VSDASVDAVVGTLVLCSVKDVDMTLQ  215 (217)
Q Consensus       184 d~~~l~--~~~~sfD~V~~~~~l~~~~d~~~~L~  215 (217)
                      |+....  +++..||.|+.     .+++|..+|.
T Consensus       168 di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~  196 (324)
T d2b25a1         168 DISGATEDIKSLTFDAVAL-----DMLNPHVTLP  196 (324)
T ss_dssp             CTTCCC-------EEEEEE-----CSSSTTTTHH
T ss_pred             chhhcccccCCCCcceEee-----cCcCHHHHHH
Confidence            998764  46678999975     4555555443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=1.3e-11  Score=92.70  Aligned_cols=75  Identities=17%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      -.+++|||+|||+|.++..++.....+|+|+|+++.+++.+++++...+.   +.+++.+|+..+   ++.||+|+++--
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~---~~~~~~~d~~~~---~~~fD~Vi~nPP  118 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG---KFKVFIGDVSEF---NSRVDIVIMNPP  118 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT---SEEEEESCGGGC---CCCCSEEEECCC
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC---CceEEECchhhh---CCcCcEEEEcCc
Confidence            37889999999999998887765556999999999999999999887774   789999998776   367999998654


Q ss_pred             c
Q 027913          204 L  204 (217)
Q Consensus       204 l  204 (217)
                      +
T Consensus       119 ~  119 (201)
T d1wy7a1         119 F  119 (201)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=2.5e-11  Score=94.66  Aligned_cols=77  Identities=10%  Similarity=0.097  Sum_probs=68.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEecc
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTL  202 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~  202 (217)
                      .++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++++..++. ++++++++|+..++ ..+.||.|++..
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~-~~v~~~~~D~~~~~-~~~~~D~Ii~~~  182 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVE-DRMSAYNMDNRDFP-GENIADRILMGY  182 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCT-TTEEEECSCTTTCC-CCSCEEEEEECC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCC-ceEEEEEcchHHhc-cCCCCCEEEECC
Confidence            378999999999999999988765679999999999999999999999986 67999999999885 357899998753

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.25  E-value=1.2e-11  Score=88.95  Aligned_cols=76  Identities=18%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      .+++|||+|||+|.++..++.....+|+++|.++.+++.+++++...++. .+++++++|+..+ +...++||+|++-
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~-~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCG-GGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccc-cchhhhcccccccccccccccceeEec
Confidence            78999999999999998877665579999999999999999999988876 6799999998874 4567899999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=2e-11  Score=92.99  Aligned_cols=84  Identities=11%  Similarity=0.190  Sum_probs=69.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhhC-------CCCeEEEecCCHHHHHHHHHHHHHc-----CCCCCCeEEEecccccccCC
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAAD-------TDVQVLGVDPNRKMEKYAQTAAVAA-----GLPLTNFKFLQAVGEAIPVS  191 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~-------~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~v~~~~~d~~~l~~~  191 (217)
                      .++.+|||||||+|+.+..+++-       .+.+|+++|.++++++.|++++...     ++  .|+.++.+|......+
T Consensus        79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~--~nv~~~~~d~~~~~~~  156 (223)
T d1r18a_          79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS--GQLLIVEGDGRKGYPP  156 (223)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH--TSEEEEESCGGGCCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc--cEEEEEeccccccccc
Confidence            58899999999999998777641       2348999999999999999886543     33  5899999999887666


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                      .+.||.|++..++.++++
T Consensus       157 ~~~fD~Iiv~~a~~~~p~  174 (223)
T d1r18a_         157 NAPYNAIHVGAAAPDTPT  174 (223)
T ss_dssp             GCSEEEEEECSCBSSCCH
T ss_pred             ccceeeEEEEeechhchH
Confidence            789999999999998874

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=4.2e-11  Score=91.44  Aligned_cols=87  Identities=11%  Similarity=0.145  Sum_probs=67.4

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~sfD~V  198 (217)
                      .++.+|||+|||+|..+..+++  .+...|+|+|+++.|++.++++++..    .++..+..|....   +.....+|+|
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~----~~~~~i~~d~~~~~~~~~~~~~vD~i  147 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER----RNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC----TTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc----CCceEEEEECCCcccccccccceEEE
Confidence            6899999999999999999987  46679999999999999999987554    3678888887554   3445678888


Q ss_pred             EecccccccCChhhhhcC
Q 027913          199 VGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       199 ~~~~~l~~~~d~~~~L~e  216 (217)
                      ++  .+.+..+...++++
T Consensus       148 ~~--d~~~~~~~~~~l~~  163 (227)
T d1g8aa_         148 FE--DVAQPTQAKILIDN  163 (227)
T ss_dssp             EE--CCCSTTHHHHHHHH
T ss_pred             EE--EccccchHHHHHHH
Confidence            76  34455555555543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=9.6e-11  Score=94.16  Aligned_cols=81  Identities=20%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             HHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCce
Q 027913          120 DNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASV  195 (217)
Q Consensus       120 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sf  195 (217)
                      ..+..++++|||+|||+|.++..++.....+|+++|+|+.+++.+++++...|+. .+++++++|+.+.    +....+|
T Consensus       140 ~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-~~~~~~~~d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         140 EKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-DRMKFIVGSAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             GGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-GGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-ccceeeechhhhhhHHHHhccCCC
Confidence            3433478999999999999999888765668999999999999999999999986 6899999998653    3456789


Q ss_pred             eEEEec
Q 027913          196 DAVVGT  201 (217)
Q Consensus       196 D~V~~~  201 (217)
                      |+|++.
T Consensus       219 D~Vi~D  224 (324)
T d2as0a2         219 DIVVLD  224 (324)
T ss_dssp             EEEEEC
T ss_pred             CchhcC
Confidence            999973

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.4e-10  Score=87.56  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc------CCCCceeE
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASVDA  197 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~------~~~~sfD~  197 (217)
                      +..++||||||+|-....++. .++.+++|+|+++++++.|+++++..++. .++.++..+....-      ..+++||+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCC-cceeeeeeccHHhhhhhhhhcccCceeE
Confidence            456899999999998888775 56789999999999999999999999987 68888877654421      23568999


Q ss_pred             EEecccccc
Q 027913          198 VVGTLVLCS  206 (217)
Q Consensus       198 V~~~~~l~~  206 (217)
                      |+|+--++.
T Consensus       140 ivsNPPY~~  148 (250)
T d2h00a1         140 CMCNPPFFA  148 (250)
T ss_dssp             EEECCCCC-
T ss_pred             EEecCcccc
Confidence            999876654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.03  E-value=3.2e-10  Score=89.88  Aligned_cols=75  Identities=23%  Similarity=0.217  Sum_probs=64.9

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ++.+|||+.||+|.++..++. .+.+|++||.|+.+++.|++++...++...+++|+++|+.+.-    .....||+|++
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~-~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAA-AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHH-TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCeEEEecCCCcHHHHHHHh-CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            688999999999999998885 4568999999999999999999988886567999999997652    34578999997

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=9.2e-11  Score=94.00  Aligned_cols=74  Identities=22%  Similarity=0.178  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V~~  200 (217)
                      ++++|||++||+|.++..++. .+.+|+++|+|+.+++.++++++..|+  .+++++++|+.++    +...++||+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl--~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL--GNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC--TTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC--CCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            788999999999999988874 567899999999999999999999998  5899999998664    345678999997


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       222 D  222 (318)
T d1wxxa2         222 D  222 (318)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=4.4e-11  Score=98.40  Aligned_cols=105  Identities=12%  Similarity=0.161  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcC-------CCCCCeEE-
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAG-------LPLTNFKF-  180 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~~~~v~~-  180 (217)
                      ....+.++++.+. .++.+|||||||+|..+..++.. +..+++|||+++.|++.|+++..+.+       .....+.+ 
T Consensus       201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~  280 (406)
T d1u2za_         201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS  280 (406)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred             CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence            4457778888887 78899999999999999998864 44589999999999999999886532       22123333 


Q ss_pred             EecccccccC---CCCceeEEEecccccccCChhhhhcC
Q 027913          181 LQAVGEAIPV---SDASVDAVVGTLVLCSVKDVDMTLQA  216 (217)
Q Consensus       181 ~~~d~~~l~~---~~~sfD~V~~~~~l~~~~d~~~~L~e  216 (217)
                      +.++....+.   .-..+|+|++. .++|.++....|+|
T Consensus       281 ~~~~f~~~~~~d~~~~~adVV~in-n~~f~~~l~~~L~e  318 (406)
T d1u2za_         281 LKKSFVDNNRVAELIPQCDVILVN-NFLFDEDLNKKVEK  318 (406)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEEC-CTTCCHHHHHHHHH
T ss_pred             eeechhhccccccccccceEEEEe-cccCchHHHHHHHH
Confidence            3344333221   11356777765 46677777777665

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=1.5e-09  Score=81.91  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          111 VAGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       111 ~~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      ...+...++...  ++++|||||||+|..+..+++.  .+.+++++|+++++++.|++++...|+. ++++++.+|..++
T Consensus        44 ~G~lL~~lv~~~--kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~-~~i~l~~Gd~~e~  120 (214)
T d2cl5a1          44 KGQIMDAVIREY--SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ-DKVTILNGASQDL  120 (214)
T ss_dssp             HHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHH
T ss_pred             HHHHHHHHHHhh--CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC-ccceeeecccccc
Confidence            334555555666  8899999999999999999863  4679999999999999999999999986 6899999998764


Q ss_pred             -c-----CCCCceeEEEec
Q 027913          189 -P-----VSDASVDAVVGT  201 (217)
Q Consensus       189 -~-----~~~~sfD~V~~~  201 (217)
                       +     +..+.||+|+.-
T Consensus       121 l~~l~~~~~~~~~D~ifiD  139 (214)
T d2cl5a1         121 IPQLKKKYDVDTLDMVFLD  139 (214)
T ss_dssp             GGGHHHHSCCCCEEEEEEC
T ss_pred             ccchhhcccccccceeeec
Confidence             2     445789999865

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=4.8e-10  Score=81.82  Aligned_cols=73  Identities=11%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc----ccCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA----IPVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~----l~~~~~sfD~V~~  200 (217)
                      .+.+|||+|||+|.++..++.. +.+++++|.++.+++.++++++..++. .  ++...+...    ......+||+|++
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~-~--~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLG-A--RVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCC-C--EEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccc-c--ceeeeehhcccccccccCCccceeEE
Confidence            7889999999999999887754 568999999999999999999998874 3  444444432    2245578999987


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus       117 D  117 (171)
T d1ws6a1         117 A  117 (171)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=2.8e-09  Score=83.05  Aligned_cols=76  Identities=22%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      +..+|||+|||+|..+..+++.+..+|+++|+|+.+++.|+++++..++. .++.+..+|+... +...+.||+|+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~-~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVS-DRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCT-TSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCC-ceeEEeecccccccccccCcccEEEEc
Confidence            56789999999999888888778889999999999999999999999886 5788888887664 3334789999996

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.5e-09  Score=78.79  Aligned_cols=75  Identities=8%  Similarity=-0.001  Sum_probs=65.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      .+.+|||++||+|.++...+.....+|+.||.++.+++.+++++...+.  .++.++..|+..+ ......||+|++-
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~--~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA--GNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC--CSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc--cceeeeeecccccccccccccCEEEEc
Confidence            7889999999999999987766667999999999999999999988776  6899999998765 3456789999985

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.96  E-value=1.3e-09  Score=80.79  Aligned_cols=84  Identities=13%  Similarity=0.242  Sum_probs=68.8

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V  190 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~  190 (217)
                      +++.+. .++..+||++||+|.++..+++ .++.+++|+|.+++|++.|+++++..+   .++.++.+++..+.     +
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~---~r~~~~~~~f~~~~~~~~~~   91 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS---DRVSLFKVSYREADFLLKTL   91 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT---TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc---ccccchhHHHhhHHHHHHHc
Confidence            444444 5788999999999999999886 467899999999999999999987766   58999999987753     4


Q ss_pred             CCCceeEEEecccc
Q 027913          191 SDASVDAVVGTLVL  204 (217)
Q Consensus       191 ~~~sfD~V~~~~~l  204 (217)
                      ..++||.|+.-..+
T Consensus        92 ~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          92 GIEKVDGILMDLGV  105 (192)
T ss_dssp             TCSCEEEEEEECSC
T ss_pred             CCCCcceeeeccch
Confidence            56799999865443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.95  E-value=9e-10  Score=84.32  Aligned_cols=89  Identities=16%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++++... .++.+|||||||+|.++..+++ .+.++++||+++.+++..+++....    ++++++.+|+.+++++.
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~-~~~~v~avE~D~~l~~~l~~~~~~~----~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQ-RCNFVTAIEIDHKLCKTTENKLVDH----DNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHH-HSSEEEEECSCHHHHHHHHHHTTTC----CSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHh-CcCceEEEeeccchHHHHHHHhhcc----cchhhhhhhhhhccccc
Confidence            4455666665 6889999999999999999995 4678999999999999999876432    58999999999988765


Q ss_pred             CceeEEEecccccccC
Q 027913          193 ASVDAVVGTLVLCSVK  208 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~  208 (217)
                      .....|+ .+..+++.
T Consensus        84 ~~~~~vv-~NLPYnIs   98 (235)
T d1qama_          84 NQSYKIF-GNIPYNIS   98 (235)
T ss_dssp             SCCCEEE-EECCGGGH
T ss_pred             cccceee-eeehhhhh
Confidence            4433444 44445543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.92  E-value=1.4e-09  Score=86.78  Aligned_cols=77  Identities=14%  Similarity=0.029  Sum_probs=66.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V~~  200 (217)
                      ++++|||+.||+|.++..++......|+++|+|+.+++.+++++...++...+++++++|+.+.    .....+||+|++
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            7889999999999999887765566899999999999999999999998667899999998654    234568999997


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      -
T Consensus       224 D  224 (317)
T d2b78a2         224 D  224 (317)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.87  E-value=4.3e-09  Score=77.39  Aligned_cols=76  Identities=12%  Similarity=0.048  Sum_probs=65.0

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc----cCCCCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI----PVSDASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l----~~~~~sfD~V~~  200 (217)
                      .+.+|||++||+|.++...+......|++||.++.+++.+++++...+.. .++++++.|+...    .-...+||+|++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-~~~~i~~~D~~~~l~~~~~~~~~fDlIfl  119 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLL  119 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcc-cccccccccchhhhhhhcccCCCcceEEe
Confidence            78999999999999999888776778999999999999999999887765 6899999998764    124568999986


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      -
T Consensus       120 D  120 (182)
T d2fhpa1         120 D  120 (182)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.6e-09  Score=77.64  Aligned_cols=88  Identities=17%  Similarity=0.105  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhC--CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAAD--TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-  188 (217)
                      ......++...  .+++|||||||+|+.+..++..  .+.+++.+|.+++..+.|++.+...|+. .+++++.+|+.+. 
T Consensus        48 g~lL~~L~~~~--~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~-~~i~~~~Gda~e~l  124 (219)
T d2avda1          48 AQLLANLARLI--QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAE-HKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCT-TTEEEEESCHHHHH
T ss_pred             HHHHHHHHHcc--CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCcc-ceEEEEEeehhhcc
Confidence            34444444454  8899999999999999999863  3579999999999999999999999987 7899999997553 


Q ss_pred             c-----CCCCceeEEEecc
Q 027913          189 P-----VSDASVDAVVGTL  202 (217)
Q Consensus       189 ~-----~~~~sfD~V~~~~  202 (217)
                      +     ...++||+|+.-.
T Consensus       125 ~~~~~~~~~~~fD~ifiD~  143 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDA  143 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECS
T ss_pred             hhhhhhcccCCccEEEEeC
Confidence            2     2457899999754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.83  E-value=1.4e-10  Score=89.41  Aligned_cols=88  Identities=16%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDA  193 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~  193 (217)
                      ..++++.+. .++.+|||||||+|.++..+++. +.++++||+++.+++.+++++...    .+++++.+|+.+++++..
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~~----~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLN----TRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTC----SEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhhc----cchhhhhhhhhccccccc
Confidence            344666655 57789999999999999999854 678999999999998888765322    589999999999998877


Q ss_pred             ceeEEEecccccccC
Q 027913          194 SVDAVVGTLVLCSVK  208 (217)
Q Consensus       194 sfD~V~~~~~l~~~~  208 (217)
                      .++.|+++.- +|+.
T Consensus        93 ~~~~vv~NLP-Y~Is  106 (245)
T d1yuba_          93 QRYKIVGNIP-YHLS  106 (245)
T ss_dssp             SEEEEEEECC-SSSC
T ss_pred             eeeeEeeeee-hhhh
Confidence            7777775544 4444

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=3.5e-08  Score=79.83  Aligned_cols=81  Identities=22%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             HHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CC
Q 027913          117 QLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VS  191 (217)
Q Consensus       117 ~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~  191 (217)
                      .+++.+. .++.+|||+-||.|.++..++ ..+.+|+|+|.++.+++.|+++++..++  .|++|+.+|.+..-    ..
T Consensus       203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La-~~~~~V~gvE~~~~ai~~A~~na~~n~i--~n~~~~~~~~~~~~~~~~~~  279 (358)
T d1uwva2         203 RALEWLDVQPEDRVLDLFCGMGNFTLPLA-TQAASVVGVEGVPALVEKGQQNARLNGL--QNVTFYHENLEEDVTKQPWA  279 (358)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTTTTHHHHH-TTSSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCTTSCCSSSGGG
T ss_pred             HHHHhhccCCCceEEEecccccccchhcc-ccccEEEeccCcHHHHHHHHHhHHhccc--ccceeeecchhhhhhhhhhh
Confidence            3344443 467899999999999999998 4567999999999999999999999998  69999999987642    33


Q ss_pred             CCceeEEEe
Q 027913          192 DASVDAVVG  200 (217)
Q Consensus       192 ~~sfD~V~~  200 (217)
                      ...+|+|+.
T Consensus       280 ~~~~d~vil  288 (358)
T d1uwva2         280 KNGFDKVLL  288 (358)
T ss_dssp             TTCCSEEEE
T ss_pred             hccCceEEe
Confidence            467999885

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.65  E-value=6e-08  Score=73.50  Aligned_cols=87  Identities=23%  Similarity=0.285  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhcCCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-
Q 027913          112 AGYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-  188 (217)
Q Consensus       112 ~~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-  188 (217)
                      ......++...  .+++|||||+++|+.+..+++  ..+.+++.+|.+++..+.|++.+.+.|+. ++++++.+++.+. 
T Consensus        48 g~~L~~L~~~~--~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~-~~i~~~~g~a~~~L  124 (227)
T d1susa1          48 GQFLSMLLKLI--NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD-HKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHHHHHH--TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG-GGEEEEESCHHHHH
T ss_pred             HHHHHHHHHhc--CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc-cceeeeehHHHHHH
Confidence            34445555555  899999999999999999986  33679999999999999999999999986 7899999998654 


Q ss_pred             c------CCCCceeEEEec
Q 027913          189 P------VSDASVDAVVGT  201 (217)
Q Consensus       189 ~------~~~~sfD~V~~~  201 (217)
                      +      ...++||+|+.-
T Consensus       125 ~~l~~~~~~~~~fD~iFiD  143 (227)
T d1susa1         125 DEMIKDEKNHGSYDFIFVD  143 (227)
T ss_dssp             HHHHHCGGGTTCBSEEEEC
T ss_pred             HHHHhccccCCceeEEEec
Confidence            2      134689999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=2.2e-07  Score=69.27  Aligned_cols=87  Identities=16%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             HHHHHHHHhc----CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          114 YKSQLFDNLR----GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       114 ~~~~i~~~~~----~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      +.+++++.+.    .++.+|+|||+|.|.-+.-++- .+..+++.+|.+..-+...++...+.++  .|++++...++.+
T Consensus        50 ~~rHi~DSl~~~~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L--~nv~v~~~R~E~~  127 (207)
T d1jsxa_          50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL--ENIEPVQSRVEEF  127 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--SSEEEEECCTTTS
T ss_pred             HHHHhcchHhhhhhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC--cceeeeccchhhh
Confidence            3444544432    3678999999999998887774 7788999999999999999999999898  6999999999987


Q ss_pred             cCCCCceeEEEeccc
Q 027913          189 PVSDASVDAVVGTLV  203 (217)
Q Consensus       189 ~~~~~sfD~V~~~~~  203 (217)
                      . .+.+||+|++..+
T Consensus       128 ~-~~~~fD~V~sRA~  141 (207)
T d1jsxa_         128 P-SEPPFDGVISRAF  141 (207)
T ss_dssp             C-CCSCEEEEECSCS
T ss_pred             c-cccccceehhhhh
Confidence            5 3468999987544

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.64  E-value=4.4e-08  Score=75.17  Aligned_cols=84  Identities=15%  Similarity=0.167  Sum_probs=62.5

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  ....+|||||||+|.++..+++ .+..+++..|+. +.++       ..... ++++++.+|+.+ +++ 
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~-------~~~~~-~ri~~~~gd~~~-~~p-  138 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE-------NAPPL-SGIEHVGGDMFA-SVP-  138 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT-------TCCCC-TTEEEEECCTTT-CCC-
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh-------ccCCC-CCeEEecCCccc-ccc-
Confidence            34555554  3457899999999999999886 778899999984 3332       22222 689999999854 344 


Q ss_pred             CceeEEEecccccccCChh
Q 027913          193 ASVDAVVGTLVLCSVKDVD  211 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~~  211 (217)
                       ..|+|++..+||+++|.+
T Consensus       139 -~~D~~~l~~vLh~~~de~  156 (244)
T d1fp1d2         139 -QGDAMILKAVCHNWSDEK  156 (244)
T ss_dssp             -CEEEEEEESSGGGSCHHH
T ss_pred             -cceEEEEehhhhhCCHHH
Confidence             459999999999998754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.3e-07  Score=73.67  Aligned_cols=84  Identities=14%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ....+++... .++..|||||+|.|.++..+++. +.+++++|+++.+++..++.+...... .+++++.+|+...+++.
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~-~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVA-SKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTG-GGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccc-cchhhhHHHHhhhhhhh
Confidence            3445555555 47889999999999999999864 569999999999999999988655433 68999999998886653


Q ss_pred             CceeEEEec
Q 027913          193 ASVDAVVGT  201 (217)
Q Consensus       193 ~sfD~V~~~  201 (217)
                        ++.|+++
T Consensus        87 --~~~vV~N   93 (278)
T d1zq9a1          87 --FDTCVAN   93 (278)
T ss_dssp             --CSEEEEE
T ss_pred             --hhhhhcc
Confidence              4556654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.55  E-value=2.2e-07  Score=68.08  Aligned_cols=77  Identities=9%  Similarity=0.028  Sum_probs=63.7

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc---cCCCCceeEEEec
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI---PVSDASVDAVVGT  201 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l---~~~~~sfD~V~~~  201 (217)
                      .+.+|||+-||+|.++...+......|+.||.+...++..+++++..+.......+...|+...   ......||+|++-
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            7789999999999999998877778999999999999999999988877544677777776543   2344579999863

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.54  E-value=7.8e-08  Score=73.74  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=59.5

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ...+|||||||+|.++..+++ .+..++++.|+. +.++.+       +.. ++++++.+|+.+- .+  .+|++++.++
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~-------~~~-~rv~~~~gD~f~~-~p--~aD~~~l~~v  147 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL-------SGS-NNLTYVGGDMFTS-IP--NADAVLLKYI  147 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC-------CCB-TTEEEEECCTTTC-CC--CCSEEEEESC
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC-------ccc-CceEEEecCcccC-CC--CCcEEEEEee
Confidence            457899999999999999886 678899999984 444332       222 6999999998753 33  5799999999


Q ss_pred             ccccCChh
Q 027913          204 LCSVKDVD  211 (217)
Q Consensus       204 l~~~~d~~  211 (217)
                      ||+++|.+
T Consensus       148 LHdw~d~~  155 (244)
T d1fp2a2         148 LHNWTDKD  155 (244)
T ss_dssp             GGGSCHHH
T ss_pred             cccCChHH
Confidence            99998764

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=1.8e-07  Score=71.86  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             HHHHHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccC
Q 027913          115 KSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPV  190 (217)
Q Consensus       115 ~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~  190 (217)
                      .+.+++.+. .++..|||||||.|.++..+++ .+.++++||+++.+++..+++....    ++++++.+|+..+++
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~-~~~~v~aiEiD~~l~~~L~~~~~~~----~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGE-RLDQLTVIELDRDLAARLQTHPFLG----PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHT-TCSCEEEECCCHHHHHHHHTCTTTG----GGEEEECSCGGGCCH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHc-cCCceEEEEeccchhHHHHHHhhhc----cchhHHhhhhhhhcc
Confidence            344555554 5788999999999999999984 5678999999999999998754222    589999999988753

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=1.6e-06  Score=63.77  Aligned_cols=86  Identities=14%  Similarity=0.071  Sum_probs=55.6

Q ss_pred             CCCeEEEECCcCCcc----hHhhhh-----CCCCeEEEecCCHHHHHHHHHHH--------------HH----cCCC---
Q 027913          125 KAKKVLEIGIGTGPN----LKYYAA-----DTDVQVLGVDPNRKMEKYAQTAA--------------VA----AGLP---  174 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~----~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~--------------~~----~~~~---  174 (217)
                      ++.+||++|||+|.-    +..+.+     ....+++|+|+++.+++.|++-.              ..    .+..   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            667999999999963    222222     12347999999999999998322              00    0000   


Q ss_pred             --------CCCeEEEeccccccc-CCCCceeEEEecccccccCCh
Q 027913          175 --------LTNFKFLQAVGEAIP-VSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       175 --------~~~v~~~~~d~~~l~-~~~~sfD~V~~~~~l~~~~d~  210 (217)
                              ...+.+...+..... .+.+.||+|+|.++|.++++.
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~  148 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT  148 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH
Confidence                    012344444444332 345789999999999999865

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.33  E-value=1.1e-06  Score=68.43  Aligned_cols=77  Identities=17%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc--------CCCCCCeEEEecccccccCCCCce
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA--------GLPLTNFKFLQAVGEAIPVSDASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~v~~~~~d~~~l~~~~~sf  195 (217)
                      ..+++||.||+|.|..+..+.+.+..+++.||+++.+++.|++.+...        ....++++++.+|+...--.+++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            578999999999999999888766679999999999999999765211        111268999999987653345789


Q ss_pred             eEEEe
Q 027913          196 DAVVG  200 (217)
Q Consensus       196 D~V~~  200 (217)
                      |+|++
T Consensus       151 DvIi~  155 (276)
T d1mjfa_         151 DVIIA  155 (276)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            99986

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.26  E-value=1.9e-06  Score=68.45  Aligned_cols=79  Identities=25%  Similarity=0.222  Sum_probs=60.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhh------CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA------DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~  197 (217)
                      .++.+|||.|||+|.++..+..      ....+++|+|+++.+++.|+.+....+.   +..+..+|..... ....||+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~-~~~~fD~  191 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGLANL-LVDPVDV  191 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTTSCC-CCCCEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---hhhhhcccccccc-ccccccc
Confidence            3567899999999999877653      1234799999999999999988877664   5677777765443 4578999


Q ss_pred             EEecccccc
Q 027913          198 VVGTLVLCS  206 (217)
Q Consensus       198 V~~~~~l~~  206 (217)
                      |+++--+..
T Consensus       192 vi~NPPy~~  200 (328)
T d2f8la1         192 VISDLPVGY  200 (328)
T ss_dssp             EEEECCCSE
T ss_pred             cccCCCCCC
Confidence            999865543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.22  E-value=8.5e-07  Score=67.74  Aligned_cols=83  Identities=13%  Similarity=0.157  Sum_probs=60.4

Q ss_pred             HHHHHHhc--CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCC
Q 027913          116 SQLFDNLR--GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSD  192 (217)
Q Consensus       116 ~~i~~~~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~  192 (217)
                      ..+++.+.  ....+|||||||+|.++..+++ .++.++++.|+.+. ++.+       .. ..+++++.+|+.+ ++|.
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-------~~-~~r~~~~~~d~~~-~~P~  139 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-------PS-YPGVEHVGGDMFV-SIPK  139 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-------CC-CTTEEEEECCTTT-CCCC
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-------cc-CCceEEecccccc-cCCC
Confidence            34455443  3357899999999999999986 77889999999653 2221       22 2689999999854 3443


Q ss_pred             CceeEEEecccccccCCh
Q 027913          193 ASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~d~  210 (217)
                        .|+++...++|..++.
T Consensus       140 --ad~~~l~~vlh~~~d~  155 (243)
T d1kyza2         140 --ADAVFMKWICHDWSDE  155 (243)
T ss_dssp             --CSCEECSSSSTTSCHH
T ss_pred             --cceEEEEEEeecCCHH
Confidence              5778889999998764

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.21  E-value=3e-06  Score=66.95  Aligned_cols=77  Identities=18%  Similarity=0.179  Sum_probs=62.1

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--C-CCCCCeEEEecccccc-cCCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--G-LPLTNFKFLQAVGEAI-PVSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~-~~~~~v~~~~~d~~~l-~~~~~sfD~V  198 (217)
                      ..+++||.||.|.|..+..+++.. ..++++||+++++++.+++.+...  + +..++++++.+|+... .-.+.+||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            478899999999999999888754 569999999999999999887432  1 2236899999999875 2345689999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       156 i~  157 (312)
T d1uira_         156 II  157 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.18  E-value=6.3e-06  Score=62.39  Aligned_cols=76  Identities=20%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC---CCceeEEEe
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAVVG  200 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~---~~sfD~V~~  200 (217)
                      ...+|+|||+|.|.-+.-++- .+..+++.+|.+..-+...+....+.++  .++.++...++.+...   .+.||+|++
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L--~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL--ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC--SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC--CCcEEEeehhhhccccccccccceEEEE
Confidence            467999999999998877764 6788999999999999999999999998  6999999998887522   358999998


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      -.
T Consensus       148 RA  149 (239)
T d1xdza_         148 RA  149 (239)
T ss_dssp             EC
T ss_pred             hh
Confidence            54

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=9.8e-06  Score=63.29  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      +.+++||-||.|.|..++.+.+.. ..++++||+++.+++.+++.+...  .+..++++++.+|+...- -.++.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            478999999999999999998754 468999999999999999876432  233368999999987752 3356899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +-
T Consensus       168 ~D  169 (295)
T d1inla_         168 ID  169 (295)
T ss_dssp             EE
T ss_pred             Ec
Confidence            63

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=5.9e-06  Score=60.10  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=63.1

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CC
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VS  191 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~  191 (217)
                      +++.+. .++..++|..+|.|.++..+++. +.+|+|+|..+.+++.+++..    .  .++.++..+...+.     +.
T Consensus        10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~----~--~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2          10 ALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH----L--PGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC----C--TTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc----c--cceeEeehHHHHHHHHHHHcC
Confidence            444444 58899999999999999999875 568999999999999998642    1  58899999887763     44


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      .+.+|.|+.-..+
T Consensus        83 ~~~vdgIl~DLGv   95 (182)
T d1wg8a2          83 VERVDGILADLGV   95 (182)
T ss_dssp             CSCEEEEEEECSC
T ss_pred             CCccCEEEEEccC
Confidence            5689999975433

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.04  E-value=2.4e-05  Score=60.49  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=63.2

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEecccccc-cCCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAI-PVSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~  199 (217)
                      ..+++||-||.|.|..++.+.+.+ ..+++.+|+++++++.|++.+..  ..+..++++++.+|+... .-.+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            478999999999999999998754 46999999999999999987643  223346899999998764 23457899998


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      .-
T Consensus       154 ~D  155 (274)
T d1iy9a_         154 VD  155 (274)
T ss_dssp             ES
T ss_pred             Ec
Confidence            64

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.4e-05  Score=61.06  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=63.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC---CCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS---DASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~---~~sfD~V  198 (217)
                      .++.+|||+++|.|.-+..++.  .....++++|+++.-++..+++++..|+  .++.+...|...++..   .+.||.|
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~--~~~~~~~~d~~~~~~~~~~~~~fD~V  170 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV--SCCELAEEDFLAVSPSDPRYHEVHYI  170 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC--CSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc--cceeeeehhhhhhcccccccceeeEE
Confidence            4788999999999998887775  4567899999999999999999999998  6899999998877532   2579999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       171 L~  172 (293)
T d2b9ea1         171 LL  172 (293)
T ss_dssp             EE
T ss_pred             ee
Confidence            86

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.97  E-value=9.8e-06  Score=63.67  Aligned_cols=78  Identities=17%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHHc--CCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVAA--GLPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      ..+++||-||.|.|..++.+.+... .+++.||+++.+++.+++.+...  ++..++++++.+|+...- -...+||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4788999999999999999987554 68999999999999999876431  223368999999987752 3457899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      .-
T Consensus       185 ~D  186 (312)
T d2b2ca1         185 TD  186 (312)
T ss_dssp             EC
T ss_pred             Ec
Confidence            64

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.95  E-value=2.9e-05  Score=60.50  Aligned_cols=77  Identities=23%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCCC-CeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccccc--CCCCceeEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIP--VSDASVDAV  198 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~--~~~~sfD~V  198 (217)
                      ..+++||=||.|.|..++.+.+... .+++.||+++++++.+++.+..  .....++++++.+|....-  ..+++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            5788999999999999999987644 5899999999999999987632  2233378999999986652  345689999


Q ss_pred             Ee
Q 027913          199 VG  200 (217)
Q Consensus       199 ~~  200 (217)
                      +.
T Consensus       159 i~  160 (290)
T d1xj5a_         159 IV  160 (290)
T ss_dssp             EE
T ss_pred             EE
Confidence            96

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.5e-05  Score=60.70  Aligned_cols=78  Identities=15%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHH--cCCCCCCeEEEeccccccc-CCCCceeEEE
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVA--AGLPLTNFKFLQAVGEAIP-VSDASVDAVV  199 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~  199 (217)
                      ..+++||-||.|.|..++.+.+.+ ..+++.+|+++++++.+++.+..  ..+..++++++.+|+...- -..++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            578899999999999999998754 56999999999999999987643  1233369999999987652 3456899999


Q ss_pred             ec
Q 027913          200 GT  201 (217)
Q Consensus       200 ~~  201 (217)
                      +-
T Consensus       157 ~D  158 (285)
T d2o07a1         157 TD  158 (285)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.89  E-value=9.5e-06  Score=60.34  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             HHHHhc-CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCc
Q 027913          118 LFDNLR-GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDAS  194 (217)
Q Consensus       118 i~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~s  194 (217)
                      +++.+. .++.+|||.|||+|.++..+.+  .....++|+|+++..+..+           .+..++.+|..... ....
T Consensus        11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~   78 (223)
T d2ih2a1          11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFLLWE-PGEA   78 (223)
T ss_dssp             HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGGGCC-CSSC
T ss_pred             HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-----------ccceeeeeehhccc-cccc
Confidence            444444 5778999999999999877764  3446799999998754322           24577888877664 3478


Q ss_pred             eeEEEeccccccc
Q 027913          195 VDAVVGTLVLCSV  207 (217)
Q Consensus       195 fD~V~~~~~l~~~  207 (217)
                      ||+|+++.-+...
T Consensus        79 fd~ii~npP~~~~   91 (223)
T d2ih2a1          79 FDLILGNPPYGIV   91 (223)
T ss_dssp             EEEEEECCCCCCB
T ss_pred             cceecccCccccc
Confidence            9999998765443

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=5.4e-05  Score=59.57  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=64.8

Q ss_pred             CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~  200 (217)
                      .++.+|||+.+|.|.-+..++.  .....++++|+++.-++..+++++..++  .++.....|...++.....||.|+.
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~--~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--LNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--CSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh--hccccccccccccccccccccEEEE
Confidence            4889999999999988777765  3456799999999999999999999998  5888888998888766789999986

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=5.3e-05  Score=54.77  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=56.1

Q ss_pred             HHHHhc--CCCCeEEEECCcCCcchHhhhh--CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----
Q 027913          118 LFDNLR--GKAKKVLEIGIGTGPNLKYYAA--DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----  189 (217)
Q Consensus       118 i~~~~~--~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----  189 (217)
                      |.+++.  .++.+||||||+.|.++.++.+  .....++++|+.+-           ..  ..++.++++|.....    
T Consensus        13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~--i~~~~~~~~d~~~~~~~~~   79 (180)
T d1ej0a_          13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP--IVGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC--CTTEEEEESCTTSHHHHHH
T ss_pred             HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc--cCCceEeecccccchhhhh
Confidence            444443  5888999999999999998875  44568999998652           12  268899999986632    


Q ss_pred             ----CCCCceeEEEecccccc
Q 027913          190 ----VSDASVDAVVGTLVLCS  206 (217)
Q Consensus       190 ----~~~~sfD~V~~~~~l~~  206 (217)
                          ...+.||+|++-.+..-
T Consensus        80 ~~~~~~~~~~DlVlSD~ap~~  100 (180)
T d1ej0a_          80 LLERVGDSKVQVVMSDMAPNM  100 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCC
T ss_pred             hhhhccCcceeEEEecccchh
Confidence                34568999998766543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.55  E-value=2.3e-05  Score=59.09  Aligned_cols=76  Identities=16%  Similarity=0.347  Sum_probs=52.4

Q ss_pred             HHHHHHhcCCCCeEEEECCcCCcchHhhhh-----CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-
Q 027913          116 SQLFDNLRGKAKKVLEIGIGTGPNLKYYAA-----DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-  189 (217)
Q Consensus       116 ~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-  189 (217)
                      ..++..+  ++++|||||++.|..+..++.     ....+++|+|+.+.........       .+++.++++|..... 
T Consensus        73 ~eli~~~--KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~-------~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          73 HDMLWEL--RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD-------MENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHHH--CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-------CTTEEEEECCSSCSGG
T ss_pred             HHHHHHh--CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc-------ccceeeeecccccHHH
Confidence            4466666  899999999999987665543     3467999999987543322211       168999999875432 


Q ss_pred             ---CCCCceeEEEe
Q 027913          190 ---VSDASVDAVVG  200 (217)
Q Consensus       190 ---~~~~sfD~V~~  200 (217)
                         +....+|+|+.
T Consensus       144 ~~~l~~~~~dlIfI  157 (232)
T d2bm8a1         144 FEHLREMAHPLIFI  157 (232)
T ss_dssp             GGGGSSSCSSEEEE
T ss_pred             HHHHHhcCCCEEEE
Confidence               34456888765

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=0.00028  Score=56.72  Aligned_cols=76  Identities=11%  Similarity=-0.068  Sum_probs=58.1

Q ss_pred             CCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCC-------------CCeEEEecccccccC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPL-------------TNFKFLQAVGEAIPV  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-------------~~v~~~~~d~~~l~~  190 (217)
                      .+.+|||..||+|..+..++. .+...|+..|+|+..++.++++++..++..             .++.+...|+..+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            788999999999999887665 445689999999999999999998776521             235666777655532


Q ss_pred             -CCCceeEEEe
Q 027913          191 -SDASVDAVVG  200 (217)
Q Consensus       191 -~~~sfD~V~~  200 (217)
                       ....||+|..
T Consensus       125 ~~~~~fDvIDi  135 (375)
T d2dula1         125 ERHRYFHFIDL  135 (375)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hhcCcCCcccC
Confidence             3357998874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.46  E-value=0.00036  Score=56.98  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC---C-----------CCeEEEecCCHHHHHHHHHHHHHcCCCCCCe
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD---T-----------DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNF  178 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v  178 (217)
                      ..+.+++.+. .++.+|+|-+||+|.++..+.+.   .           ...+.|+|+++.+...|+-+..-.++...+.
T Consensus       150 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         150 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             hhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            4444555554 46789999999999998666541   1           1259999999999999998887777653455


Q ss_pred             EEEecccccccCCCCceeEEEeccccc
Q 027913          179 KFLQAVGEAIPVSDASVDAVVGTLVLC  205 (217)
Q Consensus       179 ~~~~~d~~~l~~~~~sfD~V~~~~~l~  205 (217)
                      .....|....+ +...||+|+++--+.
T Consensus       230 ~i~~~d~l~~~-~~~~fD~Ii~NPPfg  255 (425)
T d2okca1         230 PIVCEDSLEKE-PSTLVDVILANPPFG  255 (425)
T ss_dssp             SEEECCTTTSC-CSSCEEEEEECCCSS
T ss_pred             eeecCchhhhh-cccccceEEecCCCC
Confidence            67777765543 457899999976553

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00025  Score=54.89  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-CCCCceeEEEe-
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-VSDASVDAVVG-  200 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-~~~~sfD~V~~-  200 (217)
                      .++.+|||+++|.|.-+..++. .....++++|+++.-++..+++++..|+  .++.....|..... ...+.||.|++ 
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~--~~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc--cceeeeccccccchhcccccccEEEEe
Confidence            4888999999999998888775 3346899999999999999999999997  45555555544332 34468999995 


Q ss_pred             -----cccccccCCh
Q 027913          201 -----TLVLCSVKDV  210 (217)
Q Consensus       201 -----~~~l~~~~d~  210 (217)
                           ..++..-++.
T Consensus       179 aPCSg~G~~rr~p~~  193 (284)
T d1sqga2         179 APCSATGVIRRHPDI  193 (284)
T ss_dssp             CCCCCGGGTTTCTTH
T ss_pred             ccccccCccccccch
Confidence                 3445444443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.00033  Score=55.17  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=48.6

Q ss_pred             CCCeEEEECCcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI  188 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l  188 (217)
                      .+..|||||+|.|.++..+.+. ...+++++|+++.+++..++.+.  +   .++.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~---~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--G---SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--T---SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--C---CCcEEEeCchhhc
Confidence            5678999999999999999864 34589999999999999887753  2   5789999998654

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.90  E-value=0.00052  Score=51.81  Aligned_cols=82  Identities=10%  Similarity=0.031  Sum_probs=59.3

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCC-------CCCeEEEecccccc-cCCCCcee
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLP-------LTNFKFLQAVGEAI-PVSDASVD  196 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------~~~v~~~~~d~~~l-~~~~~sfD  196 (217)
                      ...+|||.-||.|..+..++. .|.+|+++|-++.+....++.+......       ..+++++.+|..++ .-....||
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~-~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D  166 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLAS-VGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHH-HTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred             CCCEEEECCCcccHHHHHHHh-CCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence            345899999999999999884 4678999999998766655444322100       13789999997664 22346799


Q ss_pred             EEEeccccccc
Q 027913          197 AVVGTLVLCSV  207 (217)
Q Consensus       197 ~V~~~~~l~~~  207 (217)
                      +|+.=-+|.+-
T Consensus       167 vIYlDPMFp~~  177 (250)
T d2oyra1         167 VVYLDPMFPHK  177 (250)
T ss_dssp             EEEECCCCCCC
T ss_pred             EEEECCCCccc
Confidence            99987777554

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.69  E-value=0.0017  Score=48.49  Aligned_cols=56  Identities=14%  Similarity=0.132  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHH
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAV  169 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~  169 (217)
                      .+.+++++....++..|||-=||+|..+.... ..+.+.+|+|++++-++.|++++.
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45666777766789999999999998886654 678999999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.45  E-value=0.0017  Score=50.16  Aligned_cols=57  Identities=7%  Similarity=-0.040  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA  170 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~  170 (217)
                      .+.++++.....++..|||.=||+|..+.... ..+.+.+|+|++++.++.|++++.+
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~-~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAE-RESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHH-HcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            45666676666789999999999998887654 6789999999999999999988744

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.40  E-value=0.011  Score=46.88  Aligned_cols=90  Identities=14%  Similarity=0.209  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhc-CCCCeEEEECCcCCcchHhhhhC--------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEE
Q 027913          111 VAGYKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAAD--------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFL  181 (217)
Q Consensus       111 ~~~~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~  181 (217)
                      +..+...+.+.+. .....|+|+|+|+|.++..+.+.        ....++.+|+|+.+.+.-++.+..  .  .++.++
T Consensus        64 ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~--~~i~w~  139 (365)
T d1zkda1          64 LGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--I--RNIHWH  139 (365)
T ss_dssp             HHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--C--SSEEEE
T ss_pred             HHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--c--ccceec
Confidence            4444455555554 34568999999999998766541        234689999999977777766542  2  355543


Q ss_pred             ecccccccCCCCceeEEEecccccccC
Q 027913          182 QAVGEAIPVSDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       182 ~~d~~~l~~~~~sfD~V~~~~~l~~~~  208 (217)
                       .+++.+|.   ..-+|+++..|.-+|
T Consensus       140 -~~~~~~~~---~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         140 -DSFEDVPE---GPAVILANEYFDVLP  162 (365)
T ss_dssp             -SSGGGSCC---SSEEEEEESSGGGSC
T ss_pred             -cChhhccc---CCeEEEecccCcccc
Confidence             44555541   225788888887776

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.04  E-value=0.0045  Score=46.69  Aligned_cols=58  Identities=16%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCCCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHc
Q 027913          113 GYKSQLFDNLRGKAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAA  171 (217)
Q Consensus       113 ~~~~~i~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~  171 (217)
                      .+..++++....++..|||-=+|+|..+.+.. ..+.+.+|+|++++.++.|++++...
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~-~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAI-QEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHH-HHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHH-HhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            45556666666789999999999998876654 66889999999999999999998653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.016  Score=48.17  Aligned_cols=91  Identities=10%  Similarity=-0.011  Sum_probs=56.4

Q ss_pred             HHHHHHHHhc-CCCCeEEEECCcCCcchHhhhh----CC---------------CCeEEEecCCHHHHHHHHHHHHHcCC
Q 027913          114 YKSQLFDNLR-GKAKKVLEIGIGTGPNLKYYAA----DT---------------DVQVLGVDPNRKMEKYAQTAAVAAGL  173 (217)
Q Consensus       114 ~~~~i~~~~~-~~~~~vLDiGcG~G~~~~~l~~----~~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~  173 (217)
                      .++.+++.+. .++.+|+|-+||+|.++..+.+    ..               ...++|+|+++.+...|+-++.-.+.
T Consensus       152 Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~  231 (524)
T d2ar0a1         152 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  231 (524)
T ss_dssp             HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             hhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence            3344444444 4677999999999999865443    11               12589999999999999987755553


Q ss_pred             CCC---CeEEEeccccccc-CCCCceeEEEecccc
Q 027913          174 PLT---NFKFLQAVGEAIP-VSDASVDAVVGTLVL  204 (217)
Q Consensus       174 ~~~---~v~~~~~d~~~l~-~~~~sfD~V~~~~~l  204 (217)
                      ...   .-.+...+....+ .....||+|+++--+
T Consensus       232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPf  266 (524)
T d2ar0a1         232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPF  266 (524)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCC
T ss_pred             cccccccchhhhhhhhhhcccccccceeEEecCCc
Confidence            200   1112233322211 234679999987644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.005  Score=43.20  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=48.4

Q ss_pred             CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec-ccccc-cCCCCceeEEEe
Q 027913          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA-VGEAI-PVSDASVDAVVG  200 (217)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~-d~~~l-~~~~~sfD~V~~  200 (217)
                      .++.+||-+|+| .|.++..+++..|.+++++|.+++.++.+++.    |..    .++.. +..+. ....+.||+|+.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~----~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD----HYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS----EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc----EEeeccchHHHHHhhhcccceEEE
Confidence            588999999998 66677777777788999999999988888764    431    23322 11111 112357998886


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        98 ~~   99 (168)
T d1piwa2          98 CA   99 (168)
T ss_dssp             CC
T ss_pred             Ee
Confidence            43

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.76  E-value=0.014  Score=43.65  Aligned_cols=75  Identities=15%  Similarity=0.152  Sum_probs=42.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhhCC-CCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecc-cccccCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAADT-DVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAV-GEAIPVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d-~~~l~~~~~sfD~V~~~  201 (217)
                      .+..+|+|+|||.|.++.+++... ...+.|+|+--...+ ........++  .-+++...+ +..  ++++.+|+|+|-
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~--ni~~~~~~~dv~~--l~~~~~D~vlcD  139 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGW--NLVRLQSGVDVFF--IPPERCDTLLCD  139 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTG--GGEEEECSCCTTT--SCCCCCSEEEEC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCcccccccc--ccccchhhhhHHh--cCCCcCCEEEee
Confidence            577899999999999999988543 346777776321000 0000000111  123333332 222  356789999987


Q ss_pred             cc
Q 027913          202 LV  203 (217)
Q Consensus       202 ~~  203 (217)
                      .+
T Consensus       140 m~  141 (257)
T d2p41a1         140 IG  141 (257)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.72  E-value=0.032  Score=37.14  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=43.8

Q ss_pred             eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      +|+=+|+  |.++..+++   ..+..|+.+|.+++.++.+.+..        .+.++.+|..+..    ..-...|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~--------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI--------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC--------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh--------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            4566665  666555554   56789999999999888776542        3578889887643    22246788776


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus        72 ~   72 (132)
T d1lssa_          72 V   72 (132)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.63  E-value=0.074  Score=37.16  Aligned_cols=44  Identities=23%  Similarity=0.168  Sum_probs=36.7

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|||. |..+..+++..+. +|+++|.+++-++.+++.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            5888999999986 7778888887775 799999999988888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.55  E-value=0.011  Score=41.54  Aligned_cols=75  Identities=24%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             CCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCCCCceeEEEeccc
Q 027913          125 KAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVSDASVDAVVGTLV  203 (217)
Q Consensus       125 ~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  203 (217)
                      ++.+|+=||+| .|..+...+...+.+|+.+|.+++.++..+..+.      .++++...+-+.+.-.-...|+|+..-.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~------~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG------SRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG------GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc------ccceeehhhhhhHHHhhccCcEEEEeee
Confidence            68899999999 4666777777889999999999999988877653      3456666655444311235899987665


Q ss_pred             cc
Q 027913          204 LC  205 (217)
Q Consensus       204 l~  205 (217)
                      +.
T Consensus       105 ip  106 (168)
T d1pjca1         105 VP  106 (168)
T ss_dssp             CT
T ss_pred             cC
Confidence            43

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.063  Score=40.04  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=60.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++.+|=.|++.|-   .+..|+ ..|.+|+++|.+++.++.+.+.+...+.. .++.++.+|+.+..          -.
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~-~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGNIEELAAECKSAGYP-GTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            78899999998873   234444 45789999999999999999888887654 57888999987632          11


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+++.+....+.
T Consensus        87 ~g~iD~lVnnAg~~~~  102 (257)
T d1xg5a_          87 HSGVDICINNAGLARP  102 (257)
T ss_dssp             HCCCSEEEECCCCCCC
T ss_pred             cCCCCEEEecccccCC
Confidence            2579999987766544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.88  E-value=0.042  Score=38.09  Aligned_cols=44  Identities=20%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             CCCCeEEEECCc-CCcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIG-TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||-+||| .|.++..+++..+.+++++|.+++-++.+++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            578899999988 56666777777788999999999998888874

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=93.65  E-value=0.03  Score=44.10  Aligned_cols=84  Identities=11%  Similarity=0.089  Sum_probs=49.0

Q ss_pred             CCeEEEECCcCCcchHhhhhC-----------------CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEec---cc
Q 027913          126 AKKVLEIGIGTGPNLKYYAAD-----------------TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQA---VG  185 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~---d~  185 (217)
                      ..+|.|+||..|.++..+...                 +..+|..-|+-.+-....-+.+....-. ..--|+.+   .+
T Consensus        52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~-~~~~f~~gvpGSF  130 (359)
T d1m6ex_          52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV-DGVCFINGVPGSF  130 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC-TTCEEEEEEESCS
T ss_pred             ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccC-CCCeEEEecCCch
Confidence            367999999999887544421                 2235666666555443333332111100 01123332   22


Q ss_pred             ccccCCCCceeEEEecccccccCCh
Q 027913          186 EAIPVSDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       186 ~~l~~~~~sfD~V~~~~~l~~~~d~  210 (217)
                      -.--||+++.|++++.++|||+...
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~v  155 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQV  155 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSC
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcC
Confidence            2223789999999999999999753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.60  E-value=0.14  Score=37.85  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .|+.+|=-|++.|-   .+..++ ..|.+|+.+|.+++.++...+.+...+   .++.++..|+.+..          -.
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   81 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKKVKAE   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            67888888988883   344444 567899999999999999988887776   57899999997642          12


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                      -+..|+++.+..+.....
T Consensus        82 ~g~idilinnag~~~~~~   99 (244)
T d1yb1a_          82 IGDVSILVNNAGVVYTSD   99 (244)
T ss_dssp             TCCCSEEEECCCCCCCCC
T ss_pred             cCCCceeEeecccccccc
Confidence            357999998877665543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.49  E-value=0.16  Score=37.79  Aligned_cols=80  Identities=18%  Similarity=0.042  Sum_probs=59.6

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----------C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----------~  190 (217)
                      +++++|=.|++.|.   .+..++ ..|.+|+.++.+++.++.+.+.+.+.+   .++.++..|+.+..           .
T Consensus         5 ~gK~alITGas~GIG~aia~~la-~~G~~V~i~~r~~~~l~~~~~~~~~~~---~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            68899999998772   334444 457799999999999999988888877   47888999986532           1


Q ss_pred             CCCceeEEEecccccccC
Q 027913          191 SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~  208 (217)
                      .++..|+++.+.......
T Consensus        81 ~~g~idilinnag~~~~~   98 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHK   98 (258)
T ss_dssp             TTSCCCEEEECCCCCCCC
T ss_pred             hCCCcEEEeccccccccC
Confidence            235789988876665543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.16  E-value=0.079  Score=37.78  Aligned_cols=44  Identities=23%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             CCCCeEEEECCcC-CcchHhhhh-CCCCeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAA-DTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||-+|||. |..+..+++ .....++++|.+++.++.|++.
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            5899999999997 556666665 3445899999999999888764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.044  Score=42.19  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             CCeEEEECCcCCcchHhhhh-CCCC-eEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc---CCCCceeEEEe
Q 027913          126 AKKVLEIGIGTGPNLKYYAA-DTDV-QVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP---VSDASVDAVVG  200 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~-~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~sfD~V~~  200 (217)
                      +.+|+|+-||.|.+...+.. .... -+.++|+.+..++..+.+.       +...++..|+.++.   ++...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-------~~~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence            56899999999987766643 2222 3679999999888877764       34567788888764   22346898886


Q ss_pred             cc
Q 027913          201 TL  202 (217)
Q Consensus       201 ~~  202 (217)
                      ..
T Consensus        75 gp   76 (343)
T d1g55a_          75 SP   76 (343)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.61  E-value=0.05  Score=38.19  Aligned_cols=44  Identities=20%  Similarity=0.103  Sum_probs=35.9

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||-+|+|. |.++..+++..|. +|+++|.+++.++.+++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            4789999999883 6677777776675 899999999999888754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=92.58  E-value=0.044  Score=40.86  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             CCCCeEEEECCcCCcchHhhhh-C----C------------------------------------CCeEEEecCCHHHHH
Q 027913          124 GKAKKVLEIGIGTGPNLKYYAA-D----T------------------------------------DVQVLGVDPNRKMEK  162 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~~~~~l~~-~----~------------------------------------~~~v~gvD~s~~~l~  162 (217)
                      ..+..+||--||+|.+....+- .    +                                    ...++|.|+++.+++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            3556799999999998755432 0    0                                    124679999999999


Q ss_pred             HH---HHHHHHcCCCCCCeEEEeccccccc-----CCCCceeEEEecc
Q 027913          163 YA---QTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDAVVGTL  202 (217)
Q Consensus       163 ~a---~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD~V~~~~  202 (217)
                      .|   ++++...|+. ..+.+.+.|+.+..     .+....++||++-
T Consensus       129 ~A~~~r~n~~~Agl~-~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNP  175 (249)
T d1o9ga_         129 AARRLRERLTAEGGA-LPCAIRTADVFDPRALSAVLAGSAPDVVLTDL  175 (249)
T ss_dssp             HHHHHHHHHHHTTSS-CCEEEEECCTTCGGGHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHcCCC-ceeeeeecchhccCcchhccCCCCCCEEEeCC
Confidence            88   4678888886 68899999875532     1235578888763

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.54  E-value=0.098  Score=39.04  Aligned_cols=80  Identities=15%  Similarity=0.077  Sum_probs=58.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++.+|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+...+....++.++..|+.+..          -.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            67888888888773   234444 45789999999999999999888877654457899999986531          11


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+++.+....
T Consensus        83 ~g~iDilvnnAG~~   96 (264)
T d1spxa_          83 FGKLDILVNNAGAA   96 (264)
T ss_dssp             HSCCCEEEECCC--
T ss_pred             hCCCCEeecccccc
Confidence            25799999876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.12  Score=38.28  Aligned_cols=88  Identities=19%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++.+|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.... .++.++..|+.+..          -.
T Consensus         2 ~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEAGVQCKAALHEQFEP-QKTLFIQCDVADQQQLRDTFRKVVDH   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHTTTSCG-GGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHhcCC-CcEEEEEeecCCHHHHHHHHHHHHHH
Confidence            46788888887763   233343 56789999999999888887776543221 57889999987642          01


Q ss_pred             CCceeEEEecccccccCChhhhh
Q 027913          192 DASVDAVVGTLVLCSVKDVDMTL  214 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d~~~~L  214 (217)
                      -+..|+++.+.......+.++.+
T Consensus        80 ~G~iDilVnnAg~~~~~~~~~~~  102 (254)
T d2gdza1          80 FGRLDILVNNAGVNNEKNWEKTL  102 (254)
T ss_dssp             HSCCCEEEECCCCCCSSSHHHHH
T ss_pred             cCCcCeecccccccccccchhee
Confidence            25799999988887777766654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.35  E-value=0.23  Score=36.61  Aligned_cols=79  Identities=15%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++.+|=.|++.| +.+.+++   ..|.+|+.+|.+++.++.+.+.+.+.+   .++.++.+|+.+..          -.
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            6778888888776 3333332   567899999999999999988887766   47889999997632          11


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+++.+......
T Consensus        85 ~g~iDilvnnag~~~~  100 (251)
T d2c07a1          85 HKNVDILVNNAGITRD  100 (251)
T ss_dssp             CSCCCEEEECCCCCCC
T ss_pred             cCCceeeeeccccccc
Confidence            2579999987765544

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.98  E-value=0.34  Score=35.83  Aligned_cols=80  Identities=14%  Similarity=0.017  Sum_probs=59.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----------C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----------~  190 (217)
                      +++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+...+   .++.++..|+.+..           .
T Consensus         7 ~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTVANH   82 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence            68899988888763   344444 457799999999999999888887776   47888999986531           1


Q ss_pred             CCCceeEEEecccccccC
Q 027913          191 SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~  208 (217)
                      -.+..|+++.+....+..
T Consensus        83 ~~~~idilvnnAG~~~~~  100 (259)
T d2ae2a_          83 FHGKLNILVNNAGIVIYK  100 (259)
T ss_dssp             TTTCCCEEEECCCCCCCC
T ss_pred             hCCCceEEEECCceeccC
Confidence            124799999887665543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.72  E-value=0.23  Score=34.35  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             CCCCeEEEECCcCC-cchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-----cCCCCcee
Q 027913          124 GKAKKVLEIGIGTG-PNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-----PVSDASVD  196 (217)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-----~~~~~sfD  196 (217)
                      .++.+||=+|||.- ..+..+++. ....++++|.+++-++.+++.    |.    .+++..+-+++     .+.++.||
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga----~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA----THVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC----SEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC----eEEEeCCCcCHHHHHHHHcCCCCc
Confidence            58889999999743 344555553 345788899999988888764    32    23443332222     13356799


Q ss_pred             EEEec
Q 027913          197 AVVGT  201 (217)
Q Consensus       197 ~V~~~  201 (217)
                      +|+-.
T Consensus        99 ~vid~  103 (174)
T d1f8fa2          99 FALES  103 (174)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            98854

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.16  Score=35.11  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             CCCCeEEEECC--cCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc------cCCCCce
Q 027913          124 GKAKKVLEIGI--GTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI------PVSDASV  195 (217)
Q Consensus       124 ~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l------~~~~~sf  195 (217)
                      .++.+||-.|+  |.|..+..+++..+.++++++.+++.++.+++    .|..    +++...-.++      ......+
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~----~vi~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH----EVFNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS----EEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc----cccccccccHHHHhhhhhccCCc
Confidence            58889999996  46677778888888899999999887777664    3532    2322211111      0234579


Q ss_pred             eEEEeccc
Q 027913          196 DAVVGTLV  203 (217)
Q Consensus       196 D~V~~~~~  203 (217)
                      |+|+....
T Consensus        99 d~v~d~~g  106 (174)
T d1yb5a2          99 DIIIEMLA  106 (174)
T ss_dssp             EEEEESCH
T ss_pred             eEEeeccc
Confidence            99987644

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.34  Score=35.46  Aligned_cols=77  Identities=16%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             CCCeEEEECCcCC---cchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc------CCCCce
Q 027913          125 KAKKVLEIGIGTG---PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~------~~~~sf  195 (217)
                      .++++|=.|++.|   ..+..|+ ..|.+|+.+|.+++.++...+..       .++.+++.|+.+..      -.-+..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~~~g~i   77 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQADLDSLVREC-------PGIEPVCVDLGDWEATERALGSVGPV   77 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHS-------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHhc-------CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence            7889999998877   2344444 45789999999998877665543       35678888886542      122679


Q ss_pred             eEEEecccccccCC
Q 027913          196 DAVVGTLVLCSVKD  209 (217)
Q Consensus       196 D~V~~~~~l~~~~d  209 (217)
                      |+++.+.......+
T Consensus        78 DilVnnAg~~~~~~   91 (244)
T d1pr9a_          78 DLLVNNAAVALLQP   91 (244)
T ss_dssp             CEEEECCCCCCCBC
T ss_pred             eEEEeccccccccc
Confidence            99998776655443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.48  E-value=0.24  Score=39.32  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=40.1

Q ss_pred             CCCeEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCC
Q 027913          125 KAKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGL  173 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~  173 (217)
                      +...++|||+-.|..+..+++   ....+|+++|+++...+..++++.....
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            567899999999988776654   3346899999999999999999876543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=91.45  E-value=0.31  Score=36.72  Aligned_cols=68  Identities=10%  Similarity=0.067  Sum_probs=48.8

Q ss_pred             CeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEecc
Q 027913          127 KKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL  202 (217)
Q Consensus       127 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~  202 (217)
                      .+|||+=||.|.+...+.+....-+.++|+++...+..+.+.        .-.++.+|+.++... -..+|+++...
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~--------~~~~~~~Di~~~~~~~~~~~dll~~g~   69 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH--------SAKLIKGDISKISSDEFPKCDGIIGGP   69 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC--------CSEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC--------CCCCccCChhhCCHhHcccccEEeecc
Confidence            479999999998877765433345679999998887777664        125678999887522 23689888643

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.16  E-value=0.18  Score=37.67  Aligned_cols=80  Identities=13%  Similarity=0.084  Sum_probs=59.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+....++.++.+|+.+..          -.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            67888888887772   334444 45789999999999999999988877654457899999987632          11


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+++.+....
T Consensus        83 ~g~iDilvnnAG~~   96 (272)
T d1xkqa_          83 FGKIDVLVNNAGAA   96 (272)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCceEEEeCCccc
Confidence            25789999876543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.14  E-value=0.23  Score=36.84  Aligned_cols=76  Identities=14%  Similarity=0.082  Sum_probs=57.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=.|.+.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+   .++.++..|+.+..          -.
T Consensus         4 ~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            78899988887773   344444 557899999999999999998887776   47889999986531          01


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+..|+++.+...
T Consensus        80 ~g~iDilVnnaG~   92 (260)
T d1zema1          80 FGKIDFLFNNAGY   92 (260)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCeehhhhcc
Confidence            2579999977654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=91.07  E-value=0.32  Score=36.93  Aligned_cols=69  Identities=6%  Similarity=-0.070  Sum_probs=50.1

Q ss_pred             CCCeEEEECCcCCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccccCC-CCceeEEEecc
Q 027913          125 KAKKVLEIGIGTGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIPVS-DASVDAVVGTL  202 (217)
Q Consensus       125 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~~~-~~sfD~V~~~~  202 (217)
                      .+.+|||+=||-|.+...+.+....-+.++|+++..++..+.+..       +  ...+|+.++... -..+|+|+...
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-------~--~~~~Di~~~~~~~~~~~Dll~ggp   79 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-------E--KPEGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-------C--CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-------C--CCcCchhcCchhhcceeeeeeccc
Confidence            678999999999988887764433456779999999998888762       1  224777776422 24689988643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.95  E-value=0.25  Score=33.90  Aligned_cols=71  Identities=21%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEecccccc-cCCCCceeEEEec
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAI-PVSDASVDAVVGT  201 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l-~~~~~sfD~V~~~  201 (217)
                      .++.+||=+|+|. |.++..+++..+.+++++|.+++-++.+++.    |.    -.++...-... ......+|+|+..
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga----d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA----DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC----SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC----cEEEECchhhHHHHhcCCCceeeee
Confidence            5889999999873 5667777777788899999999877777654    42    12333222221 1233568988754


Q ss_pred             c
Q 027913          202 L  202 (217)
Q Consensus       202 ~  202 (217)
                      -
T Consensus       101 ~  101 (168)
T d1uufa2         101 V  101 (168)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.82  E-value=0.2  Score=37.45  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=58.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=-|++.|-   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+....++.++.+|+.+..          -.
T Consensus         3 ~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            67888888888773   334444 45789999999999999999888887654357899999987642          01


Q ss_pred             CCceeEEEecccc
Q 027913          192 DASVDAVVGTLVL  204 (217)
Q Consensus       192 ~~sfD~V~~~~~l  204 (217)
                      -+..|+++.+...
T Consensus        82 ~G~iDilVnnAG~   94 (274)
T d1xhla_          82 FGKIDILVNNAGA   94 (274)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCceEEEeeccc
Confidence            2578999987654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.79  E-value=0.18  Score=34.47  Aligned_cols=44  Identities=23%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|. |..+..+++..+.+|+++|.+++.++.+++.
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            5788999999874 4556667777788999999999988887753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.77  E-value=0.48  Score=34.87  Aligned_cols=79  Identities=13%  Similarity=0.047  Sum_probs=56.2

Q ss_pred             CCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCC
Q 027913          126 AKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSD  192 (217)
Q Consensus       126 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~  192 (217)
                      ++.+|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+.+.+   .++.++.+|+.+..          -.-
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRSVPEIEALVAAVVERY   77 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            4556777776663   234444 457899999999999999988888776   47899999987642          112


Q ss_pred             CceeEEEecccccccC
Q 027913          193 ASVDAVVGTLVLCSVK  208 (217)
Q Consensus       193 ~sfD~V~~~~~l~~~~  208 (217)
                      +..|+++.+.......
T Consensus        78 g~iDilVnnAG~~~~~   93 (257)
T d2rhca1          78 GPVDVLVNNAGRPGGG   93 (257)
T ss_dssp             CSCSEEEECCCCCCCS
T ss_pred             CCCCEEEecccccCCC
Confidence            5799999877655443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.86  E-value=0.35  Score=33.00  Aligned_cols=40  Identities=25%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             eEEEECCcC-C-cchHhhhh-CCCCeEEEecCCHHHHHHHHHH
Q 027913          128 KVLEIGIGT-G-PNLKYYAA-DTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       128 ~vLDiGcG~-G-~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      +|+=||||. | .++..+.+ ....+++|+|.+++.++.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            577899984 3 34555554 3346899999999999988865

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.61  Score=34.29  Aligned_cols=78  Identities=15%  Similarity=0.029  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=-|.+.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+++.+   .++.++.+|+.+..          -.
T Consensus        10 ~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~l~~~g---~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            78889887877662   233343 567899999999999999988888776   57889999987632          01


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+....+
T Consensus        86 ~g~iDilvnnAG~~~  100 (255)
T d1fmca_          86 LGKVDILVNNAGGGG  100 (255)
T ss_dssp             HSSCCEEEECCCCCC
T ss_pred             cCCCCEeeeCCcCCC
Confidence            157999998776543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.99  E-value=1.3  Score=30.82  Aligned_cols=75  Identities=11%  Similarity=-0.059  Sum_probs=49.8

Q ss_pred             CCCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccc---ccCCCCceeE
Q 027913          124 GKAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEA---IPVSDASVDA  197 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~---l~~~~~sfD~  197 (217)
                      -++++||=.|++.|-   .++.++ ..|.+|+.++.+++.++...+.+....    ++.+...|+.+   +.-.-+..|+
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la-~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLA-GEGAEVVLCGRKLDKAQAAADSVNKRF----KVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHHHHH----TCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-hhccchhhcccchHHHHHHHHHHHhcc----chhhhhhhcccHHHHHHHhcCcCe
Confidence            488999999987762   234444 557899999999999988887775542    23344444433   3211246899


Q ss_pred             EEeccc
Q 027913          198 VVGTLV  203 (217)
Q Consensus       198 V~~~~~  203 (217)
                      |+.+..
T Consensus        96 lin~Ag  101 (191)
T d1luaa1          96 VFTAGA  101 (191)
T ss_dssp             EEECCC
T ss_pred             eeecCc
Confidence            987654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.93  E-value=0.76  Score=33.45  Aligned_cols=75  Identities=15%  Similarity=0.096  Sum_probs=52.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc------CCCCce
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~------~~~~sf  195 (217)
                      .++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++...+..       .++.++..|+.+..      -.-+..
T Consensus         4 ~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~g~i   75 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNSDLVSLAKEC-------PGIEPVCVDLGDWDATEKALGGIGPV   75 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHS-------TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhc-------CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence            68899988887772   234444 56789999999988776655432       35778888886642      112679


Q ss_pred             eEEEeccccccc
Q 027913          196 DAVVGTLVLCSV  207 (217)
Q Consensus       196 D~V~~~~~l~~~  207 (217)
                      |+++.+......
T Consensus        76 DilVnnAg~~~~   87 (242)
T d1cyda_          76 DLLVNNAALVIM   87 (242)
T ss_dssp             SEEEECCCCCCC
T ss_pred             eEEEECCccccc
Confidence            999987765444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=88.89  E-value=0.12  Score=34.08  Aligned_cols=62  Identities=16%  Similarity=0.062  Sum_probs=39.2

Q ss_pred             EEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEec
Q 027913          129 VLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVGT  201 (217)
Q Consensus       129 vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~~  201 (217)
                      ++=+|+  |.++..+++   ..+..|+++|.+++.++.++..    +     ...+.+|..+..    ..-...|.|++.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~-----~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----A-----THAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----C-----SEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----C-----CcceeeecccchhhhccCCccccEEEEE
Confidence            444555  555555554   5678999999999988877532    2     357778876643    111356766653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.70  E-value=0.82  Score=33.48  Aligned_cols=76  Identities=16%  Similarity=0.060  Sum_probs=54.2

Q ss_pred             eEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CCCCc
Q 027913          128 KVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VSDAS  194 (217)
Q Consensus       128 ~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~~~s  194 (217)
                      .+|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+   .++.++.+|+.+..          -.-+.
T Consensus         3 ValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~i~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSDRDQVFAAVEQARKTLGG   78 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            34666776662   234444 457899999999999999988888777   57889999997632          11257


Q ss_pred             eeEEEeccccccc
Q 027913          195 VDAVVGTLVLCSV  207 (217)
Q Consensus       195 fD~V~~~~~l~~~  207 (217)
                      .|+++.+..+...
T Consensus        79 iDilVnnAG~~~~   91 (255)
T d1gega_          79 FDVIVNNAGVAPS   91 (255)
T ss_dssp             CCEEEECCCCCCC
T ss_pred             ccEEEeccccccc
Confidence            9999987665443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.33  Score=33.30  Aligned_cols=44  Identities=23%  Similarity=0.075  Sum_probs=33.9

Q ss_pred             CCCCeEEEECCcCC-cchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTG-PNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|.. .++..+++..+. +|+++|.+++-++.|++.
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            57889999999854 445555565555 899999999998888764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=88.52  E-value=0.69  Score=34.53  Aligned_cols=81  Identities=12%  Similarity=0.061  Sum_probs=57.0

Q ss_pred             CCCeEEEECCcCC---cchHhhhhCCCCeEEEecCCHHHHHHHHHHHHH-cCCCCCCeEEEeccccccc----------C
Q 027913          125 KAKKVLEIGIGTG---PNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIP----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~l~----------~  190 (217)
                      +++++|=-|++.|   ..+..|+ ..|.+|+++|.++..++.+.+.+.. .+   .++.++..|+.+..          .
T Consensus        24 ~gK~alITGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~l~~~~~~l~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDVLKATAEQISSQTG---NKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHS---SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHHHHHHHHHHHHhcC---CceEEEEecccChHHHHHHhhhhhh
Confidence            6789999998877   2334444 4678999999999988777766543 34   47788889986532          1


Q ss_pred             CCCceeEEEecccccccCC
Q 027913          191 SDASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d  209 (217)
                      ..+..|+++.+........
T Consensus       100 ~~g~iDilvnnAg~~~~~~  118 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISP  118 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSC
T ss_pred             hccccchhhhhhhhccccc
Confidence            2367899998776655443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.34  E-value=0.61  Score=34.37  Aligned_cols=79  Identities=14%  Similarity=0.033  Sum_probs=57.6

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.+.+.. .++.++.+|+.+..          -.
T Consensus         3 ~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~-~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHCTT-CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhCCC-CeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            67888988988773   344554 45789999999999998888877665433 57888999986632          01


Q ss_pred             CCceeEEEeccccc
Q 027913          192 DASVDAVVGTLVLC  205 (217)
Q Consensus       192 ~~sfD~V~~~~~l~  205 (217)
                      -+..|+++.+..+.
T Consensus        81 ~G~iDiLVnnAG~~   94 (258)
T d1iy8a_          81 FGRIDGFFNNAGIE   94 (258)
T ss_dssp             HSCCSEEEECCCCC
T ss_pred             hCCCCEEEECCccc
Confidence            15799999876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.27  E-value=0.44  Score=32.35  Aligned_cols=38  Identities=16%  Similarity=0.168  Sum_probs=27.2

Q ss_pred             eEEEECCc--CCcchHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          128 KVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       128 ~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      +|.=||+|  -+.++..+. ..+.+|++.|.+++.++.+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~-~~g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHH
Confidence            56667887  223445554 567899999999998887765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=88.05  E-value=0.8  Score=31.09  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             CCCCeEEEECCc--CCcchHhhhhCCC-CeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIG--TGPNLKYYAADTD-VQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|++  .|..+..+++..+ ..|+++|.+++-++.+++.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            588899999973  4455555555344 6899999999988888764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=0.32  Score=32.76  Aligned_cols=67  Identities=6%  Similarity=-0.050  Sum_probs=41.1

Q ss_pred             eEEEECCcCCcchHhhhh---CCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      +|+=+|+  |..+..+++   ..+..++.+|.+++......+....     ..+.++.+|..+..    ..-...|.|++
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEEEE
Confidence            4555554  555555554   4577899999998765444444333     24689999986642    12245777775


Q ss_pred             c
Q 027913          201 T  201 (217)
Q Consensus       201 ~  201 (217)
                      .
T Consensus        78 ~   78 (153)
T d1id1a_          78 L   78 (153)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.68  E-value=0.19  Score=34.95  Aligned_cols=44  Identities=14%  Similarity=0.216  Sum_probs=35.0

Q ss_pred             CCCCeEEEECCcCC-cchHhhhhCCC-CeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTG-PNLKYYAADTD-VQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~G-~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|.. .++..+++..+ .+|+++|.+++-++.|++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            58889999999854 44555555555 6899999999999999976

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.55  E-value=0.4  Score=35.57  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=54.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++.+|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+...    .++.++..|+.+..          -.
T Consensus         5 ~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDHGQKVCNNIGSP----DVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCCT----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhcCC----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            78899999988773   234444 45789999999999888777766432    46788899986632          01


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+....+
T Consensus        80 ~g~iD~lVnnAG~~~   94 (268)
T d2bgka1          80 HGKLDIMFGNVGVLS   94 (268)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCcceecccccccc
Confidence            257899998776543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.32  E-value=0.88  Score=33.36  Aligned_cols=82  Identities=16%  Similarity=0.020  Sum_probs=57.7

Q ss_pred             CCCeEEEECCcCC---cchHhhhhCCCCeEEE-ecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------C
Q 027913          125 KAKKVLEIGIGTG---PNLKYYAADTDVQVLG-VDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~g-vD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~  190 (217)
                      .++++|=.|++.|   ..+..|+ ..|.+|+. .+.+++.++.+.+.+.+.+   .++.++..|+.+..          .
T Consensus         5 ~GK~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChHHHHHHHHHHHHcC---CCceEecCCCCCHHHHHHHHHHHHH
Confidence            6888997776655   3344444 45667765 5778888888888888877   47889999987631          1


Q ss_pred             CCCceeEEEecccccccCCh
Q 027913          191 SDASVDAVVGTLVLCSVKDV  210 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~d~  210 (217)
                      .-+..|+++.+..+.+..+.
T Consensus        81 ~~g~idilinnag~~~~~~~  100 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDE  100 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCG
T ss_pred             HcCCCcEEEecccccccccc
Confidence            22579999998877665543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.29  E-value=0.2  Score=34.90  Aligned_cols=44  Identities=14%  Similarity=0.147  Sum_probs=36.0

Q ss_pred             CCCCeEEEECCcC-CcchHhhhhCCCC-eEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGT-GPNLKYYAADTDV-QVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|||. |..+..+++..+. .|+.+|.+++-++.+++.
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            5889999999997 7777778776564 799999999988777764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.81  E-value=0.97  Score=33.36  Aligned_cols=78  Identities=14%  Similarity=0.047  Sum_probs=55.7

Q ss_pred             CCeEEEE-CCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          126 AKKVLEI-GIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       126 ~~~vLDi-GcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++|-=| |++.|.   .++.|++..+..|+.++.+++.++.+.+.++..+   .++.++..|+.+..          -.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHHHh
Confidence            5666444 555552   2344444457899999999999999999988877   47899999997742          11


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|++|.+..+.+
T Consensus        79 ~g~iDiLVnNAGi~~   93 (275)
T d1wmaa1          79 YGGLDVLVNNAGIAF   93 (275)
T ss_dssp             HSSEEEEEECCCCCC
T ss_pred             cCCcEEEEEcCCcCC
Confidence            257999999876643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.78  E-value=0.76  Score=33.67  Aligned_cols=80  Identities=14%  Similarity=0.044  Sum_probs=56.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHH-HHcCCCCCCeEEEeccccccc----------C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAA-VAAGLPLTNFKFLQAVGEAIP----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~d~~~l~----------~  190 (217)
                      +++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+ .+.+   .++.++..|+.+..          -
T Consensus         4 ~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~l~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEEASEAAQKLTEKYG---VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHHHC---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            67889999988773   344444 55789999999999887766655 3445   47888999986632          0


Q ss_pred             CCCceeEEEecccccccC
Q 027913          191 SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~~  208 (217)
                      .-+..|+++.+..+....
T Consensus        80 ~~g~iDiLVnnAG~~~~~   97 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRH   97 (251)
T ss_dssp             HHSCCCEEEECCCCCCCC
T ss_pred             HcCCCCEEEECCCCCCCC
Confidence            115799999887665443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.50  E-value=0.25  Score=38.53  Aligned_cols=75  Identities=16%  Similarity=0.025  Sum_probs=43.6

Q ss_pred             CCeEEEECCcCCcchHhhhh---CCCCeEEEecCCH-H----------------HHHHHHHHHHHcCCCCCCeEEEeccc
Q 027913          126 AKKVLEIGIGTGPNLKYYAA---DTDVQVLGVDPNR-K----------------MEKYAQTAAVAAGLPLTNFKFLQAVG  185 (217)
Q Consensus       126 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~-~----------------~l~~a~~~~~~~~~~~~~v~~~~~d~  185 (217)
                      |++||=.|. +|..+..+++   ..|.+|+++|--. .                ..+..+......+   .+++|+.+|+
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~Dl   76 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG---KSIELYVGDI   76 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC---CCCEEEESCT
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcC---CCcEEEEccC
Confidence            467776665 8877766654   4678999998311 1                1111111111122   4789999999


Q ss_pred             cccc-----CCCCceeEEEecccc
Q 027913          186 EAIP-----VSDASVDAVVGTLVL  204 (217)
Q Consensus       186 ~~l~-----~~~~sfD~V~~~~~l  204 (217)
                      .+..     +.+..+|+|+-..+.
T Consensus        77 ~d~~~l~~~~~~~~~d~ViHlAa~  100 (393)
T d1i24a_          77 CDFEFLAESFKSFEPDSVVHFGEQ  100 (393)
T ss_dssp             TSHHHHHHHHHHHCCSEEEECCSC
T ss_pred             CCHHHHHHHHHhhcchheeccccc
Confidence            7653     333468988865543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.47  E-value=0.8  Score=33.71  Aligned_cols=79  Identities=19%  Similarity=0.098  Sum_probs=57.4

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc--------C-C-
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP--------V-S-  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~--------~-~-  191 (217)
                      +++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+...+   .++.++..|+.+..        . . 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhcC---CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            68899999988773   344444 457899999999999998888887766   47899999986531        0 1 


Q ss_pred             -CCceeEEEeccccccc
Q 027913          192 -DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 -~~sfD~V~~~~~l~~~  207 (217)
                       .+..|+++.+....+.
T Consensus        83 ~~g~idilvnnAG~~~~   99 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRS   99 (259)
T ss_dssp             HTTCCSEEEEECCC---
T ss_pred             hCCCcccccccccccCC
Confidence             2579999987765543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.38  E-value=0.86  Score=30.72  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             CCCCeEEEECCcCCc-chHhhhhCCCCeEEEecCCHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGP-NLKYYAADTDVQVLGVDPNRKMEKYAQT  166 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~l~~a~~  166 (217)
                      .++.+||=.|+|.-. ....+++..+.+++++|.+++-++.+++
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            588899999988643 4455556777899999999998887765

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=84.79  E-value=0.8  Score=31.31  Aligned_cols=75  Identities=13%  Similarity=0.079  Sum_probs=50.1

Q ss_pred             CCCCeEEEECCc--CCcchHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc------CCCCce
Q 027913          124 GKAKKVLEIGIG--TGPNLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP------VSDASV  195 (217)
Q Consensus       124 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~------~~~~sf  195 (217)
                      .++.+||=.|+|  .|..+..+++..+.+|++++.+++.++.+++.    |..    +++...-+++.      -....+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga~----~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GAW----QVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TCS----EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CCe----EEEECCCCCHHHHHHHHhCCCCe
Confidence            578899998666  46778888888889999999999988888754    431    23322212211      134578


Q ss_pred             eEEEecccccc
Q 027913          196 DAVVGTLVLCS  206 (217)
Q Consensus       196 D~V~~~~~l~~  206 (217)
                      |+|+....-..
T Consensus        99 d~v~d~~g~~~  109 (179)
T d1qora2          99 RVVYDSVGRDT  109 (179)
T ss_dssp             EEEEECSCGGG
T ss_pred             EEEEeCccHHH
Confidence            99887654433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.11  E-value=1.3  Score=30.13  Aligned_cols=44  Identities=18%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             CCCCeEEEECCcCCc-chHhhhhC-CCCeEEEecCCHHHHHHHHHH
Q 027913          124 GKAKKVLEIGIGTGP-NLKYYAAD-TDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       124 ~~~~~vLDiGcG~G~-~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      .++.+||=+|+|... .+..+++. ....++++|.+++-++.+++.
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            478899999998554 34555553 446899999999988888764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.05  E-value=0.36  Score=36.39  Aligned_cols=75  Identities=19%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             eEEEECCcCCcchHhhhh---CCCCeEEEec-CCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----CCCCceeEE
Q 027913          128 KVLEIGIGTGPNLKYYAA---DTDVQVLGVD-PNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----VSDASVDAV  198 (217)
Q Consensus       128 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD-~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~sfD~V  198 (217)
                      +|| |-.|+|..+..+.+   ..+.+|+++| ++.............  .  .+++++.+|+.+..     +....+|.|
T Consensus         2 KIL-VTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~--~--~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLL-ITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS--L--GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEE-EETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT--T--CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEE-EECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc--c--CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            566 54567877665554   4578999998 332211111111111  1  57899999997642     333467999


Q ss_pred             Eeccccccc
Q 027913          199 VGTLVLCSV  207 (217)
Q Consensus       199 ~~~~~l~~~  207 (217)
                      +-.....+.
T Consensus        77 ih~aa~~~~   85 (338)
T d1orra_          77 FHLAGQVAM   85 (338)
T ss_dssp             EECCCCCCH
T ss_pred             Eeecccccc
Confidence            876665443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=1.6  Score=32.75  Aligned_cols=83  Identities=12%  Similarity=-0.077  Sum_probs=57.3

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCC--CCCCeEEEeccccccc----------
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGL--PLTNFKFLQAVGEAIP----------  189 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~v~~~~~d~~~l~----------  189 (217)
                      +++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.....  ...++.++.+|+.+..          
T Consensus        11 ~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            78899988988773   233444 4578999999999988888777654321  1147889999987642          


Q ss_pred             CCCCceeEEEecccccccC
Q 027913          190 VSDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       190 ~~~~sfD~V~~~~~l~~~~  208 (217)
                      -.-+..|+++.+.......
T Consensus        90 ~~~G~iDiLVnnAg~~~~~  108 (297)
T d1yxma1          90 DTFGKINFLVNNGGGQFLS  108 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCC
T ss_pred             HHhCCeEEEEeeccccccC
Confidence            0125799999877655443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=1.2  Score=32.29  Aligned_cols=78  Identities=17%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+.      .+..++..|+.+..          -.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~l~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENGAQAISDYLG------ANGKGLMLNVTDPASIESVLEKIRAE   75 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHHHHHHHHHHG------GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHHHHHhC------CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence            67788888887762   334444 457899999999998887776653      35678888886531          11


Q ss_pred             CCceeEEEecccccccCC
Q 027913          192 DASVDAVVGTLVLCSVKD  209 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~d  209 (217)
                      -+..|+++.+....+...
T Consensus        76 ~g~iDilVnnAg~~~~~~   93 (243)
T d1q7ba_          76 FGEVDILVNNAGITRDNL   93 (243)
T ss_dssp             TCSCSEEEECCCCCCCCC
T ss_pred             cCCcceehhhhhhccccc
Confidence            257999998776655443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.44  E-value=0.75  Score=29.79  Aligned_cols=58  Identities=10%  Similarity=0.106  Sum_probs=39.3

Q ss_pred             CcCCcchHhhhhC-CCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----CCCCceeEEEe
Q 027913          134 IGTGPNLKYYAAD-TDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----VSDASVDAVVG  200 (217)
Q Consensus       134 cG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----~~~~sfD~V~~  200 (217)
                      ||.|..+..+++. .+..++.+|.+++.++..+.         ..+.++.+|..+..    ..-...+.|++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~---------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH---------TTCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh---------cCccccccccCCHHHHHHhhhhcCcEEEE
Confidence            5778888877763 34578999999998776643         24578999986532    22245667765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.44  E-value=0.8  Score=33.45  Aligned_cols=77  Identities=10%  Similarity=0.050  Sum_probs=54.1

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++...+.+.      .++.++..|+.+..          -.
T Consensus         5 ~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEEGKAMAAELA------DAARYVHLDVTQPAQWKAAVDTAVTA   77 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHTG------GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhh------CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            67889999988773   344444 557899999999987776665542      46788999986632          11


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                      -+..|+++.+....+..
T Consensus        78 ~g~idilinnAG~~~~~   94 (244)
T d1nffa_          78 FGGLHVLVNNAGILNIG   94 (244)
T ss_dssp             HSCCCEEEECCCCCCCB
T ss_pred             hCCCeEEEECCcccCCC
Confidence            25789999877665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.28  E-value=0.37  Score=33.85  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=36.3

Q ss_pred             CCCeEEEECCcC-CcchHhhhhCCCCeEEEecCCHHHHHHHHHH
Q 027913          125 KAKKVLEIGIGT-GPNLKYYAADTDVQVLGVDPNRKMEKYAQTA  167 (217)
Q Consensus       125 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~  167 (217)
                      ++.+||=||+|. |..+...+...|.+|+++|.++..+++.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l   71 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESL   71 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence            788999999995 5666777778899999999999988877765

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.04  E-value=1.3  Score=32.41  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=52.4

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      .++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++...+..       .++.++.+|+.+..          -.
T Consensus         5 ~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~-------~~~~~~~~Dvs~~~~v~~~~~~~~~~   76 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESGGRALEQEL-------PGAVFILCDVTQEDDVKTLVSETIRR   76 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHC-------TTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhc-------CCCeEEEccCCCHHHHHHHHHHHHHh
Confidence            78899999988772   234444 45789999999998877665543       46788999986632          01


Q ss_pred             CCceeEEEecccccc
Q 027913          192 DASVDAVVGTLVLCS  206 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~  206 (217)
                      -+..|+++.+.....
T Consensus        77 ~g~iDilVnnAG~~~   91 (250)
T d1ydea1          77 FGRLDCVVNNAGHHP   91 (250)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             cCCCCEEEecccccc
Confidence            157999998776543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=81.88  E-value=1.5  Score=32.23  Aligned_cols=79  Identities=14%  Similarity=0.053  Sum_probs=55.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCC-HHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPN-RKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----  190 (217)
                      +++++|=.|++.|.   .+..|+ ..|.+|+.++.+ ++.++...+.+++.+   .++.++..|+.+..     +     
T Consensus         6 ~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEANSVLEEIKKVG---GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            78888888888772   334444 457789999987 456777777777766   47888999987632     1     


Q ss_pred             CCCceeEEEeccccccc
Q 027913          191 SDASVDAVVGTLVLCSV  207 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~  207 (217)
                      .-+..|+++.+....+.
T Consensus        82 ~~G~iDiLVnnAG~~~~   98 (261)
T d1geea_          82 EFGKLDVMINNAGLENP   98 (261)
T ss_dssp             HHSCCCEEEECCCCCCC
T ss_pred             HhCCCCEeeccceecCC
Confidence            12578999987766543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.72  E-value=1.4  Score=32.17  Aligned_cols=77  Identities=18%  Similarity=0.136  Sum_probs=54.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      +++++|=.|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+   +   .++.++..|+.+..     +     .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~l~~~~~~~---~---~~~~~~~~Dvt~~~~v~~~~~~~~~~   76 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYV-REGARVAIADINLEAARATAAEI---G---PAACAIALDVTDQASIDRCVAELLDR   76 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHHHHHHHHHH---C---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHh---C---CceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            67888988988772   234444 45789999999998777666544   4   57889999986642     0     1


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                      -+..|+++.+....+..
T Consensus        77 ~g~iDilVnnAg~~~~~   93 (256)
T d1k2wa_          77 WGSIDILVNNAALFDLA   93 (256)
T ss_dssp             HSCCCEEEECCCCCCCC
T ss_pred             hCCccEEEeeccccccc
Confidence            15799999887766544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=81.48  E-value=1.3  Score=32.45  Aligned_cols=80  Identities=14%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCC-HHHHHHHHHHHHH-cCCCCCCeEEEeccccccc-----C----
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPN-RKMEKYAQTAAVA-AGLPLTNFKFLQAVGEAIP-----V----  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s-~~~l~~a~~~~~~-~~~~~~~v~~~~~d~~~l~-----~----  190 (217)
                      +++.+|=-|++.|.   .+..|+ ..|.+|+.+|.+ ++.++.+.+.+.+ .+   .++.++..|+.+..     +    
T Consensus         3 ~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~   78 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIEKVRAGLAAQHG---VKVLYDGADLSKGEAVRGLVDNAV   78 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHHHHHHHHHHHHT---SCEEEECCCTTSHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHH
Confidence            57788877777763   334444 557799999986 5667766665543 34   47889999997642     1    


Q ss_pred             -CCCceeEEEecccccccC
Q 027913          191 -SDASVDAVVGTLVLCSVK  208 (217)
Q Consensus       191 -~~~sfD~V~~~~~l~~~~  208 (217)
                       .-+..|+++.+....+..
T Consensus        79 ~~~G~iDiLVnnAG~~~~~   97 (260)
T d1x1ta1          79 RQMGRIDILVNNAGIQHTA   97 (260)
T ss_dssp             HHHSCCSEEEECCCCCCCC
T ss_pred             HHhCCCcEEEeecccccCC
Confidence             115799999887665443

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.42  E-value=1.4  Score=31.95  Aligned_cols=74  Identities=19%  Similarity=0.128  Sum_probs=51.2

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc-----C-----C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP-----V-----S  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~-----~-----~  191 (217)
                      +++++|=-|++.|-   .+..|+ ..|.+|+.+|.+++.++.+.+.        -++.++..|+.+..     +     .
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~l~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~~~~   74 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGPLREAAEA--------VGAHPVVMDVADPASVERGFAEALAH   74 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHT--------TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHH--------cCCeEEEEecCCHHHHHHHHHHHHHh
Confidence            67889999988772   234444 4578999999999887766553        24678888986632     0     1


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+++.+......
T Consensus        75 ~g~iDilVnnAG~~~~   90 (242)
T d1ulsa_          75 LGRLDGVVHYAGITRD   90 (242)
T ss_dssp             HSSCCEEEECCCCCCC
T ss_pred             cCCceEEEECCccccc
Confidence            1479999887665443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.41  E-value=0.99  Score=32.97  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++++|=-|++.|.   .+..|+ ..|.+|+.+|.+++.++.+.+.+.. +   .++.++.+|+.+..          -.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDVGEKAAKSVGT-P---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHCC-T---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHhCC-C---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            78888888877762   234444 4578999999999988877776532 1   57899999987632          01


Q ss_pred             CCceeEEEeccccccc
Q 027913          192 DASVDAVVGTLVLCSV  207 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~  207 (217)
                      -+..|+++.+......
T Consensus        80 ~G~iDiLVnnAg~~~~   95 (251)
T d1zk4a1          80 FGPVSTLVNNAGIAVN   95 (251)
T ss_dssp             HSSCCEEEECCCCCCC
T ss_pred             hCCceEEEeccccccc
Confidence            1579999987765543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=81.40  E-value=0.88  Score=33.38  Aligned_cols=79  Identities=11%  Similarity=0.024  Sum_probs=54.5

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHH-HHcCCCCCCeEEEeccccccc----------C
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAA-VAAGLPLTNFKFLQAVGEAIP----------V  190 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~v~~~~~d~~~l~----------~  190 (217)
                      +++++|=-|++.|.   .++.|+ ..|.+|+.+|.+++.++.+.+.+ ++.+   .++.++.+|+.+..          -
T Consensus         8 ~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAADAVEVTEKVGKEFG---VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTTHHHHHHHHHHHHT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence            67889998977662   334444 45789999999987776655554 4445   47889999987632          1


Q ss_pred             CCCceeEEEeccccccc
Q 027913          191 SDASVDAVVGTLVLCSV  207 (217)
Q Consensus       191 ~~~sfD~V~~~~~l~~~  207 (217)
                      .-+..|+++.+......
T Consensus        84 ~~g~iDilVnnAg~~~~  100 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVV  100 (260)
T ss_dssp             HSCSEEEEEECCCCCCC
T ss_pred             HhCCCcEeccccccccc
Confidence            22689999987765543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=81.29  E-value=0.95  Score=32.98  Aligned_cols=78  Identities=14%  Similarity=0.031  Sum_probs=51.9

Q ss_pred             CCCeEEEECCcCCc---chHhhhhCCCCeEEEecCCHHHHHHHHHHHHHcCCCCCCeEEEeccccccc----------CC
Q 027913          125 KAKKVLEIGIGTGP---NLKYYAADTDVQVLGVDPNRKMEKYAQTAAVAAGLPLTNFKFLQAVGEAIP----------VS  191 (217)
Q Consensus       125 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~l~----------~~  191 (217)
                      +++.+|=.|.+.|.   .+..|+ ..|.+|+.+|.++.  +.+.+.+++.+   .++.++.+|+.+..          -.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~--~~~~~~~~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~~   77 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPA--PEAEAAIRNLG---RRVLTVKCDVSQPGDVEAFGKQVIST   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCC--HHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCch--HHHHHHHHHcC---CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            78888988887762   334444 45778999998764  23444455555   57889999987642          01


Q ss_pred             CCceeEEEecccccccC
Q 027913          192 DASVDAVVGTLVLCSVK  208 (217)
Q Consensus       192 ~~sfD~V~~~~~l~~~~  208 (217)
                      -+..|+++.+..+....
T Consensus        78 ~G~iDilVnnAG~~~~~   94 (247)
T d2ew8a1          78 FGRCDILVNNAGIYPLI   94 (247)
T ss_dssp             HSCCCEEEECCCCCCCC
T ss_pred             cCCCCEEEECCCCCCCC
Confidence            25799999887665543