Citrus Sinensis ID: 027914

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
cccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccHHHccccccccHHHHHHHHHHHHcccEEEEEcccccccccEEEEEEEcccccEEEEcccccccccccccEEcEEccccccccEEEccccEEEEEEEEccccHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHHHHHHHcccEEEEc
cccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHccccHcccccHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEccccccEEEEEEEEccccEccEEEEcccccccccEHHHHcccccccccEEEEccEEEEEccHHHHHcHHHHHHHHHccccEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEc
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFfqrakpykdhptILKMQELAKELGvvmpvsffeeannahynsiaiidadgsdlglyrkshipdgpgyqekfyfnpgdtgfKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEIlfyptaigsepqddgldsrdHWRRVMqghaganvvsytdc
MEKGKRREVVVSAlqfactddvstNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMqghaganvvsytdc
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIG********************************
******R***VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
*****RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
Q3HVN1300 N-carbamoylputrescine ami N/A no 0.958 0.693 0.903 1e-112
Q9XGI9300 N-carbamoylputrescine ami N/A no 0.958 0.693 0.899 1e-112
Q8VYF5326 N-carbamoylputrescine ami no no 0.967 0.644 0.805 1e-111
Q93XI4301 N-carbamoylputrescine ami yes no 0.963 0.694 0.808 1e-101
P60327304 N-carbamoyl-D-amino acid N/A no 0.788 0.562 0.326 4e-17
Q6INI7276 Omega-amidase NIT2-B OS=X N/A no 0.875 0.688 0.322 1e-16
Q28IE5276 Omega-amidase NIT2 OS=Xen no no 0.875 0.688 0.307 2e-16
Q44185304 N-carbamoyl-D-amino acid yes no 0.861 0.615 0.308 2e-16
Q5RBM6384 Beta-ureidopropionase OS= yes no 0.700 0.395 0.333 7e-16
Q9UBR1384 Beta-ureidopropionase OS= yes no 0.700 0.395 0.333 7e-16
>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/208 (90%), Positives = 199/208 (95%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF 64
           K R V V+ALQFACTDDVSTN+ATAERLVRAAH KGANIILIQELFEGYYFCQAQ+E+FF
Sbjct: 4   KNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFF 63

Query: 65  QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI 124
            RAKPY  HPTI++MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHI
Sbjct: 64  HRAKPYLGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHI 123

Query: 125 PDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184
           PDGPGYQEKFYFNPGDTGFKVFQTK+AKIGVAICWDQWFPEAARAM LQGAE+LFYPTAI
Sbjct: 124 PDGPGYQEKFYFNPGDTGFKVFQTKYAKIGVAICWDQWFPEAARAMALQGAEVLFYPTAI 183

Query: 185 GSEPQDDGLDSRDHWRRVMQGHAGANVV 212
           GSEPQDDGLDSRDHWRRVMQGHAGANVV
Sbjct: 184 GSEPQDDGLDSRDHWRRVMQGHAGANVV 211
Involved in polyamine biosynthesis.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 3
>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1 Back     alignment and function description
>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|P60327|DCAS_AGRSK N-carbamoyl-D-amino acid hydrolase OS=Agrobacterium sp. (strain KNK712) PE=1 SV=1 Back     alignment and function description
>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1 Back     alignment and function description
>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1 Back     alignment and function description
>sp|Q44185|DCAS_RHIRD N-carbamoyl-D-amino acid hydrolase OS=Rhizobium radiobacter PE=1 SV=1 Back     alignment and function description
>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
224131816301 predicted protein [Populus trichocarpa] 0.976 0.704 0.915 1e-114
18401429299 N-carbamoylputrescine amidase [Arabidops 0.967 0.702 0.909 1e-113
388497486300 unknown [Lotus japonicus] 0.972 0.703 0.891 1e-111
358248586299 uncharacterized protein LOC100787298 [Gl 0.967 0.702 0.900 1e-111
449492828311 PREDICTED: N-carbamoylputrescine amidase 0.958 0.668 0.903 1e-111
356543606299 PREDICTED: N-carbamoylputrescine amidase 0.967 0.702 0.896 1e-111
118572820300 RecName: Full=N-carbamoylputrescine amid 0.958 0.693 0.903 1e-111
388498576300 unknown [Lotus japonicus] 0.972 0.703 0.886 1e-110
449443458300 PREDICTED: N-carbamoylputrescine amidase 0.953 0.69 0.908 1e-110
350539283300 N-carbamoylputrescine amidase [Solanum l 0.958 0.693 0.899 1e-110
>gi|224131816|ref|XP_002328115.1| predicted protein [Populus trichocarpa] gi|118489609|gb|ABK96606.1| unknown [Populus trichocarpa x Populus deltoides] gi|222837630|gb|EEE75995.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  415 bits (1066), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/212 (91%), Positives = 204/212 (96%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKGK REVVVSALQFACTDDV+ NLATAERLVRAAH KG+NIILIQELFEGYYFCQAQR
Sbjct: 1   MEKGKGREVVVSALQFACTDDVAANLATAERLVRAAHKKGSNIILIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDFFQRAKPYK HPTIL MQ+LAKELGVV+PVSFFEEANNAHYNSIA+IDADG+DLGLYR
Sbjct: 61  EDFFQRAKPYKGHPTILSMQKLAKELGVVIPVSFFEEANNAHYNSIAMIDADGADLGLYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFY 180
           KSHIPDGPGYQEKFYFNPGDTGF+VFQTKFAKIG+AICWDQWFPEAARAMVLQGAEIL Y
Sbjct: 121 KSHIPDGPGYQEKFYFNPGDTGFRVFQTKFAKIGIAICWDQWFPEAARAMVLQGAEILLY 180

Query: 181 PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 212
           PTAIGSEPQD GLDS DHW+RVMQGHAGAN+V
Sbjct: 181 PTAIGSEPQDQGLDSLDHWKRVMQGHAGANLV 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18401429|ref|NP_565650.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] gi|20197650|gb|AAD15597.2| putative nitrilase [Arabidopsis thaliana] gi|21554187|gb|AAM63266.1| putative nitrilase [Arabidopsis thaliana] gi|222424030|dbj|BAH19976.1| AT2G27450 [Arabidopsis thaliana] gi|330252903|gb|AEC07997.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388497486|gb|AFK36809.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|358248586|ref|NP_001240162.1| uncharacterized protein LOC100787298 [Glycine max] gi|255647785|gb|ACU24353.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449492828|ref|XP_004159114.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543606|ref|XP_003540251.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max] Back     alignment and taxonomy information
>gi|118572820|sp|Q3HVN1.1|AGUB_SOLTU RecName: Full=N-carbamoylputrescine amidase gi|76160960|gb|ABA40443.1| beta-alanine synthase-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|388498576|gb|AFK37354.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449443458|ref|XP_004139494.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|350539283|ref|NP_001234385.1| N-carbamoylputrescine amidase [Solanum lycopersicum] gi|75267500|sp|Q9XGI9.1|AGUB_SOLLC RecName: Full=N-carbamoylputrescine amidase gi|5262946|emb|CAB45873.1| beta-alanine synthase [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2038623326 NLP1 "nitrilase-like protein 1 0.834 0.555 0.933 2.8e-103
UNIPROTKB|Q48Q56292 PSPPH_0152 "Carbon-nitrogen hy 0.949 0.705 0.669 4.6e-73
TIGR_CMR|GSU_1027294 GSU_1027 "glycosyl hydrolase, 0.917 0.676 0.460 3.4e-45
TIGR_CMR|CJE_1025290 CJE_1025 "hydrolase, carbon-ni 0.824 0.617 0.441 6.3e-37
FB|FBgn0037513386 pyd3 "pyd3" [Drosophila melano 0.723 0.406 0.347 2e-18
UNIPROTKB|A7MBE8384 UPB1 "Uncharacterized protein" 0.718 0.406 0.355 1.5e-17
TAIR|locus:2173348408 BETA-UP "AT5G64370" [Arabidops 0.709 0.377 0.375 2e-17
ZFIN|ZDB-GENE-040912-65316 nit1 "nitrilase 1" [Danio reri 0.783 0.537 0.317 3.2e-17
ZFIN|ZDB-GENE-030131-1380384 upb1 "ureidopropionase, beta" 0.723 0.408 0.347 7.3e-17
UNIPROTKB|E2QT84384 UPB1 "Uncharacterized protein" 0.718 0.406 0.355 1.2e-16
TAIR|locus:2038623 NLP1 "nitrilase-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 919 (328.6 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
 Identities = 169/181 (93%), Positives = 176/181 (97%)

Query:    32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91
             LVR AH KGANIILIQELFEGYYFCQAQREDFF+RAKPYK+HPTI +MQ+LAKELGVV+P
Sbjct:    60 LVREAHAKGANIILIQELFEGYYFCQAQREDFFKRAKPYKNHPTIARMQKLAKELGVVIP 119

Query:    92 VSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA 151
             VSFFEEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA
Sbjct:   120 VSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFA 179

Query:   152 KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANV 211
             KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQD GLDSRDHWRRVMQGHAGANV
Sbjct:   180 KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDQGLDSRDHWRRVMQGHAGANV 239

Query:   212 V 212
             V
Sbjct:   240 V 240
GO:0006596 "polyamine biosynthetic process" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS
GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS
GO:0050126 "N-carbamoylputrescine amidase activity" evidence=IEA;IDA
GO:0009446 "putrescine biosynthetic process" evidence=TAS
UNIPROTKB|Q48Q56 PSPPH_0152 "Carbon-nitrogen hydrolase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1027 GSU_1027 "glycosyl hydrolase, family 10" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1025 CJE_1025 "hydrolase, carbon-nitrogen family" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2173348 BETA-UP "AT5G64370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-65 nit1 "nitrilase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3HVN1AGUB_SOLTU3, ., 5, ., 1, ., 5, 30.90380.95850.6933N/Ano
Q9XGI9AGUB_SOLLC3, ., 5, ., 1, ., 5, 30.89900.95850.6933N/Ano
Q93XI4AGUB_ORYSJ3, ., 5, ., 1, ., 5, 30.80860.96310.6943yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.530.991
3rd Layer3.5.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00660157
N-carbamolyputrescine amidohydrolase (EC-3.5.1.53) (301 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_820017
agmatine iminohydrolase (EC-3.5.3.12) (381 aa)
•••  •• 0.994
estExt_Genewise1_v1.C_LG_IV0804
arginine decarboxylase (EC-4.1.1.19) (731 aa)
•     • 0.682
gw1.164.182.1
hypothetical protein (484 aa)
•     • 0.509
eugene3.29010002
Predicted protein (267 aa)
•     • 0.442
gw1.III.614.1
GMP synthetase (EC-6.3.5.2) (434 aa)
•     • 0.434
grail3.0003090402
SubName- Full=Putative uncharacterized protein; (193 aa)
•       0.433
eugene3.80240002
Predicted protein (250 aa)
      • 0.426
estExt_fgenesh4_pm.C_LG_X0357
spermidine synthase (335 aa)
•    •• 0.423
grail3.0009003101
spermidine synthase (335 aa)
•    •• 0.413
gw1.I.1992.1
dihydropyrimidinase (EC-3.5.2.2) (504 aa)
•    •• 0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 1e-162
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 1e-149
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 1e-140
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 4e-55
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 7e-54
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 7e-52
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 1e-45
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 1e-40
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 2e-39
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 2e-37
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 1e-33
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 9e-33
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 1e-32
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 2e-28
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 5e-28
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 1e-27
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 3e-27
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 5e-24
PLN02798286 PLN02798, PLN02798, nitrilase 9e-23
cd07579279 cd07579, nitrilase_1_R2, Second nitrilase domain o 2e-22
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 2e-20
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 1e-19
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 1e-19
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 1e-18
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 1e-15
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 4e-15
PLN02504 346 PLN02504, PLN02504, nitrilase 6e-12
TIGR00546391 TIGR00546, lnt, apolipoprotein N-acyltransferase 4e-11
cd07571270 cd07571, ALP_N-acyl_transferase, Apolipoprotein N- 6e-11
TIGR04048301 TIGR04048, nitrile_sll0784, putative nitrilase, sl 7e-11
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 4e-10
PRK13287 333 PRK13287, amiF, formamidase; Provisional 7e-09
PRK00302505 PRK00302, lnt, apolipoprotein N-acyltransferase; R 2e-08
COG0815518 COG0815, Lnt, Apolipoprotein N-acyltransferase [Ce 4e-08
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 4e-07
PRK02628 679 PRK02628, nadE, NAD synthetase; Reviewed 5e-07
cd07566295 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t 4e-06
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information 
 Score =  448 bits (1155), Expect = e-162
 Identities = 183/210 (87%), Positives = 196/210 (93%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED 62
            G  R+VVV+ALQFAC+DD + N+  AERLVR AH KGANIILIQELFEGYYFCQAQRED
Sbjct: 1   MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQRED 60

Query: 63  FFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
           FFQRAKPY+ HPTI +MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLGLYRKS
Sbjct: 61  FFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKS 120

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPT 182
           HIPDGPGYQEKFYFNPGDTGFKVF TKFAKIGVAICWDQWFPEAARAMVLQGAE+L YPT
Sbjct: 121 HIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWFPEAARAMVLQGAEVLLYPT 180

Query: 183 AIGSEPQDDGLDSRDHWRRVMQGHAGANVV 212
           AIGSEPQD GLDSRDHW+RVMQGHAGAN+V
Sbjct: 181 AIGSEPQDPGLDSRDHWKRVMQGHAGANLV 210

Length = 296
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|233016 TIGR00546, lnt, apolipoprotein N-acyltransferase Back     alignment and domain information
>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|234721 PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223885 COG0815, Lnt, Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
PLN00202 405 beta-ureidopropionase 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
PLN02504 346 nitrilase 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
PLN02798286 nitrilase 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PRK13286 345 amiE acylamide amidohydrolase; Provisional 100.0
PRK13287 333 amiF formamidase; Provisional 100.0
KOG0807295 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 100.0
KOG0806298 consensus Carbon-nitrogen hydrolase [Amino acid tr 100.0
PRK13825388 conjugal transfer protein TraB; Provisional 99.96
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.96
KOG0805 337 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.96
KOG0808387 consensus Carbon-nitrogen hydrolase [Amino acid tr 99.93
KOG2303 706 consensus Predicted NAD synthase, contains CN hydr 99.6
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 85.81
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 85.14
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 83.62
PRK15018245 1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr 82.92
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 80.4
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 80.21
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information 
Probab=100.00  E-value=5.6e-46  Score=301.32  Aligned_cols=209  Identities=71%  Similarity=1.216  Sum_probs=183.6

Q ss_pred             eEEEEEeccCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcCc
Q 027914            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (217)
Q Consensus         9 ~~ia~vQ~~~~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   88 (217)
                      ||||++|+++.+|+++|++++.+++++|+++|+|||||||++++||.+.+....+...+++...++..+.++++|+++++
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   80 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV   80 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence            68999999988899999999999999999999999999999999998765433344555544445789999999999999


Q ss_pred             EEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHHH
Q 027914           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR  168 (217)
Q Consensus        89 ~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~~  168 (217)
                      +|++|+++++++++||++++++++|+++..|+|+||+..+.+.|..+|++|+..+.+|+++++|+|++||||++||+..+
T Consensus        81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r  160 (279)
T TIGR03381        81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR  160 (279)
T ss_pred             EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence            99999998888899999999999999999999999987655678889999985578999999999999999999999999


Q ss_pred             HHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914          169 AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC  217 (217)
Q Consensus       169 ~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~  217 (217)
                      .++++|+|+|++|++|+..++........+|..+.++||+||++++|+|
T Consensus       161 ~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~a  209 (279)
T TIGR03381       161 AMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAA  209 (279)
T ss_pred             HHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEE
Confidence            9999999999999998754443333456899999999999999999975

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only] Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 5e-28
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 8e-24
2vhh_A 405 Crystal Structure Of A Pyrimidine Degrading Enzyme 3e-19
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 3e-18
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 2e-17
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 2e-17
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 2e-17
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 4e-17
2w1v_A276 Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso 6e-16
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 4e-11
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 1e-08
3hkx_A283 Crystal Structure Analysis Of An Amidase From Neste 4e-06
2dyu_A 334 Helicobacter Pylori Formamidase Amif Contains A Fin 8e-06
2e2k_A 334 Helicobacter Pylori Formamidase Amif Contains A Fin 1e-04
2plq_A 348 Crystal Structure Of The Amidase From Geobacillus P 1e-04
4f4h_A 565 Crystal Structure Of A Glutamine Dependent Nad+ Syn 7e-04
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/165 (40%), Positives = 102/165 (61%), Gaps = 8/165 (4%)
Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
           ++  N + AE+L++ A  +GA ++++ ELF+ GY F    RE+ F  A+   +  T   +
Sbjct: 15  ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80  QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
            ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     Y+EK +F PG
Sbjct: 73  XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 184
           D GFKVF   FAK+GV IC+D +FPE+AR + L+GAEI+ +P  +
Sbjct: 128 DLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANL 172
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From Nesterenkonia Sp Length = 283 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned Cysteine- Glutamate-Lysine Catalytic Triad Length = 334 Back     alignment and structure
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus Rapc8 Length = 348 Back     alignment and structure
>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase From Burkholderia Thailandensis Length = 565 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
2vhh_A 405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 2e-97
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 6e-93
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 2e-89
2dyu_A 334 Formamidase; AMIF, CEK, catalytic triad, helicobac 9e-79
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 4e-78
2uxy_A 341 Aliphatic amidase; nitrilase superfamily, hydrolas 1e-51
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 7e-48
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 3e-40
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 2e-38
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 1e-36
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 2e-27
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 3e-17
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 6e-17
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 4e-16
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 7e-16
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
 Score =  288 bits (739), Expect = 2e-97
 Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 18/220 (8%)

Query: 5   KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYF 55
           KRR V V A+Q +                    + +++AA   G NI+  QE +   + F
Sbjct: 69  KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128

Query: 56  CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDAD 112
           C  ++  + + A+  ++ PT   + ELAK   +V+  S  E         +N+  +I   
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188

Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVL 172
           G  LG +RK+HIP    + E  Y+  G+TG  VF+T+F K+ V IC+ +  P+      L
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGL 248

Query: 173 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVV 212
            GAEI+F P+A               W    +  A AN  
Sbjct: 249 NGAEIVFNPSATIGRLS------EPLWSIEARNAAIANSY 282
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
2vhh_A 405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
2uxy_A 341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
2dyu_A 334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 87.34
3obe_A305 Sugar phosphate isomerase/epimerase; structural ge 81.46
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 80.03
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=297.69  Aligned_cols=201  Identities=19%  Similarity=0.266  Sum_probs=178.3

Q ss_pred             CCCCcceEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHH
Q 027914            3 KGKRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (217)
Q Consensus         3 ~~~~~~~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~   81 (217)
                      +++..+||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+    +...++.. .++..+.+++
T Consensus        15 ~~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~----~~~~a~~~-~~~~~~~l~~   89 (281)
T 3p8k_A           15 VPRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEH----LNEKADNN-LGQSFSFIKH   89 (281)
T ss_dssp             CCTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGG----HHHHSEET-THHHHHHHHH
T ss_pred             cccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhH----HHHhhhcc-CcHHHHHHHH
Confidence            3556789999999999 5899999999999999999999999999999999998753    33444432 3578999999


Q ss_pred             HHHHcCcEEeeeee-eecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEec-CCceEEEEEec
Q 027914           82 LAKELGVVMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQT-KFAKIGVAICW  159 (217)
Q Consensus        82 ~a~~~~i~i~~g~~-~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~-~~~~ig~~IC~  159 (217)
                      +|++++++|++|.+ ++.++++||++++++++|+++..|+|+||++.  |.|..+|.+|+..+.+|++ +++|+|++|||
T Consensus        90 la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~~~~v~~~~~~~~ig~~IC~  167 (281)
T 3p8k_A           90 LAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEYVAEPFQLSDGTYVTQLICY  167 (281)
T ss_dssp             HHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSSCCCCEECTTCCEEEEEEGG
T ss_pred             HHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCCCceeEEeCCCcEEEEEEec
Confidence            99999999999974 66788999999999999999999999999863  5788999999973389999 99999999999


Q ss_pred             CCcchHHHHHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914          160 DQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC  217 (217)
Q Consensus       160 d~~~p~~~~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~  217 (217)
                      |++||++.+.++.+|+|+|++|++|+.       ....+|+.++++||+||+++||+|
T Consensus       168 D~~fpe~~r~~~~~Gadli~~psa~~~-------~~~~~~~~~~~arA~en~~~vv~~  218 (281)
T 3p8k_A          168 DLRFPELLRYPARSGAKIAFYVAQWPM-------SRLQHWHSLLKARAIENNMFVIGT  218 (281)
T ss_dssp             GGGCTHHHHHHHHTTCCEEEEEECCBG-------GGHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CCCCcHHHHHHHHCCCCEEEECCCCCC-------ccHHHHHHHHHHHHHHcCCEEEEE
Confidence            999999999999999999999999753       357899999999999999999975
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 1e-28
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 5e-27
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 4e-20
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 9e-10
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score =  107 bits (266), Expect = 1e-28
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 19/223 (8%)

Query: 7   REVVVSALQFACT---DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ---AQR 60
           R+++++  Q       +     +     ++  A  +GAN I+  EL    +F +      
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF----EEANNAHYNSIAIIDADGSDL 116
            +     +     P +  + E A ELG+   + +     E      +N+  ++D  G  +
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 117 GLYRKSHIPDGPGYQE--------KFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAAR 168
           G YRK H+P    Y+         K YF PGD GF V+    AK+G+ I  D+ +PEA R
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWR 181

Query: 169 AMVLQGAEILFYPTAIGS-EPQDDGLDSRDHWRRVMQGHAGAN 210
            M L+GAEI+       +  P     D    +  ++   AG+ 
Sbjct: 182 VMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSY 224
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.9e-43  Score=279.99  Aligned_cols=193  Identities=35%  Similarity=0.559  Sum_probs=172.3

Q ss_pred             eEEEEEeccC-CCCHHHHHHHHHHHHHHHHhCCCcEEEecCcccCcccCccchhhHHhhcCCCCCChHHHHHHHHHHHcC
Q 027914            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (217)
Q Consensus         9 ~~ia~vQ~~~-~~~~~~n~~~~~~~i~~a~~~~~dlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~   87 (217)
                      ||||++|+++ .+|+++|++++.+++++|+++|+|||||||++++||++.... .....+.....++..+.++++|++++
T Consensus         2 ~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~   80 (262)
T d1j31a_           2 VKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESRE-EVFDVAQQIPEGETTTFLMELARELG   80 (262)
T ss_dssp             EEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSHH-HHHTTCBCTTTSHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhhh-HhhhhhhhcccCHHHHHHHHhhhccC
Confidence            8999999998 789999999999999999999999999999999999876543 23344444455789999999999999


Q ss_pred             cEEeeeeeeecCCceEEEEEEECCCCCeeeeeecccCCCCCCCcccccccCCCCCceeEecCCceEEEEEecCCcchHHH
Q 027914           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA  167 (217)
Q Consensus        88 i~i~~g~~~~~~~~~~Ns~~~i~~~G~~~~~y~K~~L~~~~~~~e~~~~~~g~~~~~~~~~~~~~ig~~IC~d~~~p~~~  167 (217)
                      +.+++|+++++++++||+++++++ |+++..|+|+||+.    .+..+|.+|+..+.+++++++|||++||+|.+||++.
T Consensus        81 i~i~~g~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~----~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D~~~pe~~  155 (262)
T d1j31a_          81 LYIVAGTAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPESA  155 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEET-TEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEEEECCGGGGGSHHHH
T ss_pred             ceEEeeeeecccccccccceEEEe-eeEEEEEeeeecCc----cCceeECCCCCCceEEEeCCceEEEEEehhhhhhHHH
Confidence            999999999999999999999985 78999999999986    5777899998767899999999999999999999999


Q ss_pred             HHHHHcCCcEEEeccCCCCCCCCCCCCCHHHHHHHhhhhhccccEEEEeC
Q 027914          168 RAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVSYTDC  217 (217)
Q Consensus       168 ~~~~~~g~dlil~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~  217 (217)
                      +.++.+|+|+|++|+++.          .+.|...+++||+||++|||++
T Consensus       156 ~~~~~~ga~lil~p~~~~----------~~~~~~~~~~rA~en~~~vv~~  195 (262)
T d1j31a_         156 RTLALKGAEIIAHPANLV----------MPYAPRAMPIRALENRVYTITA  195 (262)
T ss_dssp             HHHHHTTCSEEEEECCCC----------SSCHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHhccccccCCcccc----------cccchhhhhhhhhcccceEEEE
Confidence            999999999999999843          2347778899999999999974
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure