Citrus Sinensis ID: 027918

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEccccccHHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHcccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maappararADYDCLIKLLLIgdsgvgksCLLLrfsdgsfttsfITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYdvtdessfNNIRNWIRNIEQHASDNVNKVLVgnkadmdeskravptskgqaLADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRladtdsrsepstikinqpdqaggvgqaaqksaccggt
Flexible Loop (DISEMBL)
maappararADYDCLIKLLLIGDSGVGKSCLLLRFsdgsfttsfittigidfkirtieldgkriklqiwdtagqerFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNkadmdeskravptskgqalADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLadtdsrsepstikinqpdqaggvgQAAQKSACCGGT
Low Complexity Region (SEG)
MaappararaDYDCLIKLLLIGDSGVGKSCLLLRfsdgsfttsfittigidfKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Disordered region (IsUnstruct)
**********DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV********************LADEYGIKFFETSAKTNLNVEQVFFSIARDIK***************************************
Disordered Region (DISOPRED)
*************CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD**********************************SACCG**
Disordered Region (DISEMBL)
********RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD**************ALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR**********STIKINQP*******************
Disordered Region (DISPRO)
*********ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA***********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCGGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
P28186	216	Ras-related protein RABE1	yes	no	0.944	0.949	0.936	1e-111
O24466	216	Ras-related protein RABE1	yes	no	0.944	0.949	0.921	1e-109
Q39433	215	Ras-related protein RAB1B	N/A	no	0.935	0.944	0.902	1e-103
Q9LZD4	216	Ras-related protein RABE1	no	no	0.981	0.986	0.850	1e-98
Q9SF91	218	Ras-related protein RABE1	no	no	0.986	0.981	0.832	2e-96
P20790	208	Ras-related protein Rab-8	yes	no	0.958	1.0	0.705	1e-81
P20791	203	Ras-related protein Rab-8	no	no	0.935	1.0	0.691	2e-81
P36861	217	GTP-binding protein yptV2	N/A	no	0.976	0.976	0.614	2e-75
P17609	200	GTP-binding protein ypt2	yes	no	0.801	0.87	0.742	3e-72
P35280	207	Ras-related protein Rab-8	yes	no	0.778	0.816	0.717	1e-69

>sp|P28186|RAE1C_ARATH Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1

 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 192/205 (93%), Positives = 199/205 (97%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
           +TIKI+Q DQA G GQA QKSACCG
Sbjct: 191 ATIKISQTDQAAGAGQATQKSACCG 215

Involved in membrane trafficking from the Golgi to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|O24466|RAE1A_ARATH Ras-related protein RABE1a OS=Arabidopsis thaliana GN=RABE1A PE=1 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/205 (92%), Positives = 196/205 (95%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVP SKGQALADEYG+KFFETSAKTNLNVE+VFFSIA+DIKQRLADTD+R+EP
Sbjct: 131 DMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
            TIKINQ DQ  G  QA QKSACCG
Sbjct: 191 QTIKINQSDQGAGTSQATQKSACCG 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39433|RB1BV_BETVU Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1

 Score =  375 bits (962), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 186/206 (90%), Positives = 193/206 (93%), Gaps = 3/206 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLAD+D+R E 
Sbjct: 131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEA 190

Query: 191 S-TIKINQPDQAGGVGQAAQKSACCG 215
             +I I   DQ+G   QAA KSACCG
Sbjct: 191 QPSITIKPADQSG--NQAAAKSACCG 214

Beta vulgaris (taxid: 161934)

>sp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d OS=Arabidopsis thaliana GN=RABE1D PE=1 SV=1

 Score =  358 bits (920), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/214 (85%), Positives = 196/214 (91%), Gaps = 1/214 (0%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYD LIKLLLIGDSGVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE VF SIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           L +TD+++EP  IKI + D A      A+KSACC
Sbjct: 181 LTETDTKAEPQGIKITKQDTAAS-SSTAEKSACC 213

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e OS=Arabidopsis thaliana GN=RABE1E PE=1 SV=1

 Score =  352 bits (902), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 179/215 (83%), Positives = 194/215 (90%), Gaps = 1/215 (0%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  PARAR+DYD LIKLLLIGDSGVGKSCLLLRFSD +FTTSFITTIGIDFKIRT+ELD
Sbjct: 1   MAVAPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDS 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN NVEQVF SIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPD-QAGGVGQAAQKSACC 214
           L ++D+++EP  IKI + D          +KSACC
Sbjct: 181 LTESDTKAEPQGIKITKQDANKASSSSTNEKSACC 215

Involved in membrane trafficking from the Golgi to the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 151/214 (70%), Positives = 174/214 (81%), Gaps = 6/214 (2%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M +P     A YD LIKLLLIGDSGVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIEL+
Sbjct: 1   MTSPATNKSAAYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELE 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDS 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R
Sbjct: 121 VNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKR 179

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           + DT +  +P  +   QP    G     +K ACC
Sbjct: 180 MIDTPNE-QPQVV---QPGTNLGANN-NKKKACC 208

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P20791|RAB8B_DICDI Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1

 Score =  301 bits (771), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/214 (69%), Positives = 170/214 (79%), Gaps = 11/214 (5%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M +P     A YD L+KLLLIGDSGVGKSCLLLRFSDGSFT SFI TIGIDFKIRTIEL+
Sbjct: 1   MTSPATNKPAAYDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELE 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDS 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R
Sbjct: 121 VNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKR 179

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           + DT           N PD    +    +K+ CC
Sbjct: 180 MIDTP----------NDPDHTICITPNNKKNTCC 203

Protein transport. Probably involved in vesicular traffic.

Dictyostelium discoideum (taxid: 44689)

>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 167/218 (76%), Gaps = 6/218 (2%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  P R   DYD LIKLLL+GDSGVGKSCLLLRF+D  FT+SFITTIGIDFKI+ +++D
Sbjct: 1   MARIPGRP--DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDN
Sbjct: 59  GKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDN 118

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VE+ F ++A+D+  R
Sbjct: 119 VNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLAR 178

Query: 181 LADTDSRSEPSTIKINQPDQ----AGGVGQAAQKSACC 214
           +    +  +    +     Q      G    AQ  +CC
Sbjct: 179 MEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score =  271 bits (693), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/175 (74%), Positives = 152/175 (86%), Gaps = 1/175 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD LIKLLLIGDSGVGKSCLLLRFS+ SFT SFITTIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 6   YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV K+L+GNK D
Sbjct: 66  AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 186
             E +R V   +GQALADE G+KF E SAKTN+NV++ FF++AR+IK++  D ++
Sbjct: 126 C-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAEN 179

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P35280|RAB8A_RAT Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD L KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

May be involved in vesicular trafficking and neurotransmitter release. Together with RAB11A, RAB3IP, the exocyst complex, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis. Together with MYO5B and RAB11A participates in epithelial cell polarization.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
871510	216	small GTP-binding protein [Pisum sativum	0.990	0.995	0.920	1e-114
357440493	216	Ras-like protein [Medicago truncatula] g	0.990	0.995	0.911	1e-114
357440489	216	Ras-like protein [Medicago truncatula] g	0.990	0.995	0.906	1e-113
2808638	216	small GTP-binding protein [Daucus carota	0.990	0.995	0.906	1e-112
225435058	216	PREDICTED: ras-related protein RABE1c [V	0.944	0.949	0.956	1e-111
147783308	216	hypothetical protein VITISV_022421 [Viti	0.944	0.949	0.956	1e-111
302595187	216	Rab1 [Hevea brasiliensis]	0.944	0.949	0.956	1e-111
255587494	216	protein with unknown function [Ricinus c	0.944	0.949	0.956	1e-111
385888878	216	RabE1 [Nicotiana benthamiana]	0.944	0.949	0.951	1e-110
18447921	216	ras-related protein RAB8-5 [Nicotiana ta	0.990	0.995	0.925	1e-110

>gi|871510|emb|CAA90080.1| small GTP-binding protein [Pisum sativum]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/215 (92%), Positives = 208/215 (96%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV++VFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215
           LA+TDS++EP T+KINQPDQ  G  QA QKSACCG
Sbjct: 181 LAETDSKTEPQTLKINQPDQGAGSAQATQKSACCG 215

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440493|ref|XP_003590524.1| Ras-like protein [Medicago truncatula] gi|355479572|gb|AES60775.1| Ras-like protein [Medicago truncatula]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/215 (91%), Positives = 208/215 (96%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVE+VFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215
           LA++DS++EP T+KINQPDQ  G  QA+Q S+CCG
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCG 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440489|ref|XP_003590522.1| Ras-like protein [Medicago truncatula] gi|355479570|gb|AES60773.1| Ras-like protein [Medicago truncatula] gi|388512621|gb|AFK44372.1| unknown [Medicago truncatula]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/215 (90%), Positives = 208/215 (96%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPARAR+DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MAAPPARARSDYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIRNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV++VFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215
           LA++DS++EP T+KINQPDQ  G  QA+Q S+CCG
Sbjct: 181 LAESDSKTEPQTLKINQPDQGAGSAQASQTSSCCG 215

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2808638|emb|CAA04701.1| small GTP-binding protein [Daucus carota]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 195/215 (90%), Positives = 205/215 (95%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAAPPAR RADYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE+D
Sbjct: 1   MAAPPARPRADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEMD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFE SAKTN+NVE+VFFSIA+DIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFEASAKTNMNVEEVFFSIAKDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215
           LA+TDS++EP TIKINQ +Q  G   A+QKSACCG
Sbjct: 181 LAETDSKTEPQTIKINQQEQGAGTSAASQKSACCG 215

Source: Daucus carota

Species: Daucus carota

Genus: Daucus

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435058|ref|XP_002284365.1| PREDICTED: ras-related protein RABE1c [Vitis vinifera] gi|297746128|emb|CBI16184.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/205 (95%), Positives = 201/205 (98%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
           + I+INQPDQA GVGQ AQKSACCG
Sbjct: 191 TAIRINQPDQASGVGQTAQKSACCG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783308|emb|CAN64127.1| hypothetical protein VITISV_022421 [Vitis vinifera]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/205 (95%), Positives = 201/205 (98%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
           + I+INQPDQA GVGQ AQKSACCG
Sbjct: 191 TAIRINQPDQAXGVGQTAQKSACCG 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302595187|gb|ADL59582.1| Rab1 [Hevea brasiliensis]

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/205 (95%), Positives = 201/205 (98%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPTSKGQALAD+YGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDS++EP
Sbjct: 131 DMDESKRAVPTSKGQALADKYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
            TIKINQPDQAGG  QAAQKSACCG
Sbjct: 191 QTIKINQPDQAGGANQAAQKSACCG 215

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587494|ref|XP_002534292.1| protein with unknown function [Ricinus communis] gi|223525564|gb|EEF28091.1| protein with unknown function [Ricinus communis]

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/205 (95%), Positives = 199/205 (97%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLADTDSR+EP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
            TIKINQPDQAG   QAA KSACCG
Sbjct: 191 QTIKINQPDQAGSASQAAPKSACCG 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|385888878|gb|AFI98561.1| RabE1 [Nicotiana benthamiana]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 195/205 (95%), Positives = 199/205 (97%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 11  DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS++EP
Sbjct: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSKAEP 190

Query: 191 STIKINQPDQAGGVGQAAQKSACCG 215
           ST+KINQPD   G  QAAQKSACCG
Sbjct: 191 STLKINQPDAGAGGSQAAQKSACCG 215

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18447921|dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum]

 Score =  402 bits (1034), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 199/215 (92%), Positives = 208/215 (96%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA PPARARADYD LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1   MATPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
            KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 61  SKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVE+VFFSIARDIKQR
Sbjct: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQR 180

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 215
           LA++DS++EP TI+INQPDQA G  Q+AQKSACCG
Sbjct: 181 LAESDSKAEPQTIRINQPDQAAGAAQSAQKSACCG 215

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2168103	216	AT5G59840 [Arabidopsis thalian	0.944	0.949	0.853	3.6e-89
TAIR|locus:2075251	216	RABE1c [Arabidopsis thaliana (	0.944	0.949	0.848	4.6e-89
TAIR|locus:2084056	216	RAB8 "RAB GTPase homolog 8" [A	0.944	0.949	0.834	2.3e-87
TAIR|locus:2142684	216	RAB8C "RAB GTPase homolog 8C"	0.935	0.939	0.779	1.1e-80
TAIR|locus:2085089	218	RABE1e "RAB GTPase homolog E1E	0.940	0.935	0.760	1.1e-78
DICTYBASE|DDB_G0280043	208	rab8A "Rab GTPase" [Dictyostel	0.907	0.947	0.655	2.9e-64
DICTYBASE|DDB_G0276399	203	rab8B "Rab GTPase" [Dictyostel	0.884	0.945	0.640	2.3e-62
ASPGD|ASPL0000069804	206	srgA [Emericella nidulans (tax	0.921	0.970	0.6	5.7e-59
POMBASE|SPAC9E9.07c	200	ypt2 "GTPase Ypt2" [Schizosacc	0.801	0.87	0.657	1.1e-57
UNIPROTKB|P61007	207	RAB8A "Ras-related protein Rab	0.861	0.903	0.606	2.5e-56

TAIR|locus:2168103 AT5G59840 [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 175/205 (85%), Positives = 181/205 (88%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             DYD LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWD
Sbjct:    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             DMDESKRAVP SKGQALADEYGIKFFETSAKTNLNVE+VFFSIA+DIKQRLADTDSR+EP
Sbjct:   131 DMDESKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSRAEP 190

Query:   191 STIKINQPDQAGGVGQAAQKSACCG 215
             +TIKI+Q DQA G GQA QKSACCG
Sbjct:   191 ATIKISQTDQAAGAGQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2075251 RABE1c [Arabidopsis thaliana (taxid:3702)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 174/205 (84%), Positives = 181/205 (88%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             DYD LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWD
Sbjct:    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK+LVGNKA
Sbjct:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP
Sbjct:   131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEP 190

Query:   191 STIKINQPDQAGGVGQAAQKSACCG 215
             +TIKI+Q DQA G GQA QKSACCG
Sbjct:   191 ATIKISQTDQAAGAGQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0009873 "ethylene mediated signaling pathway" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2084056 RAB8 "RAB GTPase homolog 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 171/205 (83%), Positives = 178/205 (86%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             DYD LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWD
Sbjct:    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD+VNK+LVGNKA
Sbjct:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDSVNKILVGNKA 130

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             DMDESKRAVP SKGQALADEYG+KFFETSAKTNLNVE+VFFSIA+DIKQRLADTD+R+EP
Sbjct:   131 DMDESKRAVPKSKGQALADEYGMKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDARAEP 190

Query:   191 STIKINQPDQAGGVGQAAQKSACCG 215
              TIKINQ DQ  G  QA QKSACCG
Sbjct:   191 QTIKINQSDQGAGTSQATQKSACCG 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2142684 RAB8C "RAB GTPase homolog 8C" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 159/204 (77%), Positives = 171/204 (83%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             DYD LIKLLLIGDSGVGKSCLLLR                  KIRT+ELDGKRIKLQIWD
Sbjct:    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWD 70

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASDNVNK+LVGNKA
Sbjct:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDNVNKILVGNKA 130

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             DMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE VF SIA+DIKQRL +TD+++EP
Sbjct:   131 DMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVENVFMSIAKDIKQRLTETDTKAEP 190

Query:   191 STIKINQPDQAGGVGQAAQKSACC 214
               IKI + D A      A+KSACC
Sbjct:   191 QGIKITKQDTAAS-SSTAEKSACC 213

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2085089 RABE1e "RAB GTPase homolog E1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 156/205 (76%), Positives = 169/205 (82%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             DYD LIKLLLIGDSGVGKSCLLLR                  KIRT+ELDGKRIKLQIWD
Sbjct:    11 DYDYLIKLLLIGDSGVGKSCLLLRFSDDTFTTSFITTIGIDFKIRTVELDGKRIKLQIWD 70

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW++NIEQHASD+VNK+LVGNKA
Sbjct:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWMKNIEQHASDSVNKILVGNKA 130

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             DMDESKRAVPTSKGQALADEYGIKFFETSAKTN NVEQVF SIA+DIKQRL ++D+++EP
Sbjct:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNQNVEQVFLSIAKDIKQRLTESDTKAEP 190

Query:   191 STIKINQPD-QAGGVGQAAQKSACC 214
               IKI + D          +KSACC
Sbjct:   191 QGIKITKQDANKASSSSTNEKSACC 215

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0280043 rab8A "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 133/203 (65%), Positives = 154/203 (75%)

Query:    12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YD LIKLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDT
Sbjct:    12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDT 71

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
             AGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK D
Sbjct:    72 AGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCD 131

Query:   132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 191
             M E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R+ DT +  +P 
Sbjct:   132 MAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQ 189

Query:   192 TIKINQPDQAGGVGQAAQKSACC 214
              +   QP    G     +K ACC
Sbjct:   190 VV---QPGTNLGANNN-KKKACC 208

GO:0033298 "contractile vacuole organization" evidence=IGI

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0050708 "regulation of protein secretion" evidence=IMP

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0276399 rab8B "Rab GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 130/203 (64%), Positives = 151/203 (74%)

Query:    12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YD L+KLLLIGDSGVGKSCLLLR                  KIRTIEL+GKRIKLQIWDT
Sbjct:    12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDT 71

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
             AGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK D
Sbjct:    72 AGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCD 131

Query:   132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 191
             M E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R+ DT     P 
Sbjct:   132 MTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT-----P- 184

Query:   192 TIKINQPDQAGGVGQAAQKSACC 214
                 N PD    +    +K+ CC
Sbjct:   185 ----NDPDHTICITPNNKKNTCC 203

GO:0031157 "regulation of aggregate size involved in sorocarp development" evidence=IMP

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000069804 srgA [Emericella nidulans (taxid:162425)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 123/205 (60%), Positives = 147/205 (71%)

Query:    11 DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
             +YD LIKLLLIGDSGVGKSC LLR                  KIRTIELDGKR+KLQIWD
Sbjct:     6 NYDFLIKLLLIGDSGVGKSCCLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRVKLQIWD 65

Query:    71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
             TAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIR W  N+EQHAS+ V+K+L+GNK 
Sbjct:    66 TAGQERFRTITTAYYRGAMGILLVYDVTDERSFQNIRTWFSNVEQHASEGVHKILIGNKC 125

Query:   131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             D +E KRAV T +GQ LADE GI F E SAK N+N+E+ F+++A DIK+ + D+    + 
Sbjct:   126 DWEE-KRAVTTEQGQQLADELGIPFLEVSAKNNINIEKAFYNLASDIKKGM-DSSKPEQT 183

Query:   191 STIKINQPDQAGGV-GQAAQKSACC 214
              +  ++  +QA G+ G A  K  CC
Sbjct:   184 GSQGVSIDNQASGLSGNAGGK--CC 206

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IEA

POMBASE|SPAC9E9.07c ypt2 "GTPase Ypt2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 115/175 (65%), Positives = 136/175 (77%)

Query:    12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YD LIKLLLIGDSGVGKSCLLLR                  KIRTIELDGKRIKLQIWDT
Sbjct:     6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDT 65

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
             AGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV K+L+GNK D
Sbjct:    66 AGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCD 125

Query:   132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 186
               E +R V   +GQALADE G+KF E SAKTN+NV++ FF++AR+IK++  D ++
Sbjct:   126 C-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAEN 179

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006887 "exocytosis" evidence=IMP

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0006906 "vesicle fusion" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61007 RAB8A "Ras-related protein Rab-8A" [Canis lupus familiaris (taxid:9615)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 117/193 (60%), Positives = 141/193 (73%)

Query:    12 YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
             YD L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDT
Sbjct:     5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64

Query:    72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
             AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct:    65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124

Query:   132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSR 187
             +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +
Sbjct:   125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQ 183

Query:   188 SEPSTIKINQPDQ 200
                  +KI  PDQ
Sbjct:   184 GSNQGVKIT-PDQ 195

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P61007	RAB8A_CANFA	No assigned EC number	0.6632	0.8617	0.9033	yes	no
P61006	RAB8A_HUMAN	No assigned EC number	0.6632	0.8617	0.9033	yes	no
Q05974	RAB1A_LYMST	No assigned EC number	0.5970	0.9078	0.9609	N/A	no
P41924	RYL1_YARLI	No assigned EC number	0.6124	0.9308	0.9950	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.5893	0.8986	0.9605	N/A	no
Q5R4A3	RAB8A_PONAB	No assigned EC number	0.6632	0.8617	0.9033	yes	no
P20790	RAB8A_DICDI	No assigned EC number	0.7056	0.9585	1.0	yes	no
Q2HJI8	RAB8B_BOVIN	No assigned EC number	0.6473	0.8525	0.8937	yes	no
Q9SF91	RAE1E_ARATH	No assigned EC number	0.8325	0.9861	0.9816	no	no
P28186	RAE1C_ARATH	No assigned EC number	0.9365	0.9447	0.9490	yes	no
P35280	RAB8A_RAT	No assigned EC number	0.7176	0.7788	0.8164	yes	no
P17609	YPT2_SCHPO	No assigned EC number	0.7428	0.8018	0.87	yes	no
P36861	YPTV2_VOLCA	No assigned EC number	0.6146	0.9769	0.9769	N/A	no
P55258	RAB8A_MOUSE	No assigned EC number	0.7176	0.7788	0.8164	yes	no
O24466	RAE1A_ARATH	No assigned EC number	0.9219	0.9447	0.9490	yes	no
Q4R5P1	RAB8A_MACFA	No assigned EC number	0.6632	0.8617	0.9033	N/A	no
P22125	RAB1_DIPOM	No assigned EC number	0.5845	0.9032	0.9702	N/A	no
P22127	RAB10_DIPOM	No assigned EC number	0.5748	0.9124	0.99	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.5970	0.9124	0.9753	N/A	no
Q9LZD4	RAE1D_ARATH	No assigned EC number	0.8504	0.9815	0.9861	no	no
Q5KTJ6	RAB13_MESAU	No assigned EC number	0.5916	0.8663	0.9261	N/A	no
P31584	YPTV1_VOLCA	No assigned EC number	0.5735	0.9216	0.9852	N/A	no
Q39433	RB1BV_BETVU	No assigned EC number	0.9029	0.9354	0.9441	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024384001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-120
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-100
pfam00071	162	pfam00071, Ras, Ras family	1e-100
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-98
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	4e-92
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-76
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	6e-75
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-73
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-70
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-69
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-66
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-66
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-66
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-64
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	8e-64
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-63
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-62
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-61
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-59
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-58
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-58
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-57
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-56
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-56
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	7e-56
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-55
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	8e-54
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-52
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-51
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	4e-47
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	8e-47
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-46
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-45
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-45
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-41
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-40
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	7e-40
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-39
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	1e-37
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-37
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-37
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-36
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-35
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-35
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-35
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-35
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-34
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-34
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-34
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	9e-33
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-32
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-32
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-32
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-31
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-31
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-31
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	2e-30
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	7e-30
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-29
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-29
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-29
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	8e-28
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-27
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-26
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-26
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-25
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-24
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	9e-24
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-23
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-23
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-22
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	4e-22
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-22
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-19
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-18
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-17
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-17
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-16
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-15
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-15
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	4e-15
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-13
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-13
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-12
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	5e-12
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-10
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-10
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	8e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	8e-10
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	2e-09
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-09
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	7e-09
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	9e-09
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	4e-08
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	4e-08
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	6e-08
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-07
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	4e-07
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	5e-07
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	7e-07
cd01892	180	cd01892, Miro2, Mitochondrial Rho family 2 (Miro2)	2e-06
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	1e-05
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	3e-05
cd01897	167	cd01897, NOG, Nucleolar GTP-binding protein (NOG)	2e-04
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	0.001
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	0.002
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	0.003

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  337 bits (867), Expect = e-120
 Identities = 124/168 (73%), Positives = 148/168 (88%), Gaps = 1/168 (0%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D L KLLLIGDSGVGKSCLLLRFS+ SF  SFI+TIGIDFKIRTIELDGK+IKLQIWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITT+YYRGAMGI+LVYD+TDE SF NI+NW+RNI++HAS++V ++LVGNK DM
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDM 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +E KR V   +G+ALA EYGIKF ETSAK N+NVE+ F ++A+DI ++
Sbjct: 121 EE-KRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  287 bits (737), Expect = e-100
 Identities = 98/165 (59%), Positives = 133/165 (80%), Gaps = 1/165 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGKS LL RF+DG F+  + +TIG+DFK +TIE+DGKR+KLQIWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR+IT++YYRGA+G LLVYD+T+  SF N+ NW++ + ++AS NV  +LVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDL-EE 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V   + +A A+E+G+ FFETSAKTN NVE+ F  +AR+I +R
Sbjct: 120 QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  287 bits (736), Expect = e-100
 Identities = 94/163 (57%), Positives = 119/163 (73%), Gaps = 1/163 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD GVGKS LL+RF+   F   +I TIG+DF  +TIE+DGK +KLQIWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FR +   YYRGA G LLVYD+T   SF N++ W+  I +HA +NV  VLVGNK D+ E +
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDL-EDQ 119

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           R V T +G+ALA E G+ F ETSAKTN NVE+ F  +AR+I +
Sbjct: 120 RVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  283 bits (725), Expect = 2e-98
 Identities = 109/166 (65%), Positives = 140/166 (84%), Gaps = 1/166 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELDGK +KLQIWDTAGQ
Sbjct: 2   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  
Sbjct: 62  ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT- 120

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            K+ V  ++ +  ADE GI F ETSAK   NVE+ F ++AR+IK+R
Sbjct: 121 DKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  266 bits (683), Expect = 4e-92
 Identities = 91/160 (56%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++LIGDSGVGK+ LLLRF D  F+ ++ +TIG+DFK +TIE+DGK++KLQIWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR+IT++YYRGA G +LVYDVT+  SF N+  W+  ++++A  N+  +LVGNK+D+ E 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDL-ED 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
           +R V T + Q  A E G+ FFETSAKT  NV++ F S+AR
Sbjct: 120 ERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  227 bits (581), Expect = 3e-76
 Identities = 101/196 (51%), Positives = 135/196 (68%), Gaps = 5/196 (2%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD L KLL+IGDSGVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+R+KLQIWD
Sbjct: 2   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT+  SF N++ W++ IEQ+  D+V KVLVGNK 
Sbjct: 62  TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKN 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR---DIKQRLADTDSR 187
           D D  ++ V T      A + GI  FETSAK N+NVE++F  I       K+       +
Sbjct: 121 D-DPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQ 179

Query: 188 SEPSTIKINQPDQAGG 203
            + + +     +    
Sbjct: 180 QQQNDVVKLPKNSKRK 195

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  223 bits (570), Expect = 6e-75
 Identities = 87/165 (52%), Positives = 117/165 (70%), Gaps = 1/165 (0%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D L K++LIGDSGVGKS LL RF+   F     +TIG++F  RTI++DGK IK QIWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQER+R IT+AYYRGA+G LLVYD+T +S+F N+  W++ +  HA  N+  +LVGNK+D+
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDL 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
               RAVPT + +A A++ G+ F ETSA    NVE+ F  +  +I
Sbjct: 121 -RHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  218 bits (557), Expect = 4e-73
 Identities = 82/163 (50%), Positives = 119/163 (73%), Gaps = 3/163 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+LLIGDSGVGKS LLLRF+D +F     +TIG+DFK++T+ +DGK++KL IWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE 134
           RFRT+T++YYRGA G++LVYDVT   +F+N+  W+  ++ ++ + +  K+LVGNK  +D+
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNK--IDK 118

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
             R V   +GQ  A ++ + F ETSAKT + V+Q F  +   I
Sbjct: 119 ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  211 bits (538), Expect = 3e-70
 Identities = 90/156 (57%), Positives = 124/156 (79%), Gaps = 1/156 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + KLL+IG+S VGK+  L R++D SFT++F++T+GIDFK++T+  + KRIKLQIWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-E 119

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
            +R V   +G+ LAD+ G +FFE SAK N+NV+QVF
Sbjct: 120 DERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  207 bits (529), Expect = 8e-69
 Identities = 88/166 (53%), Positives = 121/166 (72%), Gaps = 1/166 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y  L K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +DGK+IKLQIWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH++ N+  +L+GNK D
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           + ES+R V   +G+A A E+G+ F ETSAKT  NVE+ F + A++I
Sbjct: 121 L-ESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  203 bits (517), Expect = 2e-66
 Identities = 96/209 (45%), Positives = 131/209 (62%), Gaps = 7/209 (3%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y  L K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT--DSRSE 189
           +   +RAV T +G+  A E+G+ F E SAKT  NVE+ F   A  I +++ D   D  +E
Sbjct: 123 LAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVSNE 181

Query: 190 PSTIKIN----QPDQAGGVGQAAQKSACC 214
              IK+          G  G ++Q   CC
Sbjct: 182 SYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  201 bits (513), Expect = 4e-66
 Identities = 100/199 (50%), Positives = 136/199 (68%), Gaps = 10/199 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++L+GDSGVGK+CLL+RF DG+F   SFI T+GI F  + + +DG ++KLQIWDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++T AYYR A  +LL+YDVT++SSF+NIR W+  I ++A  +V  +L+GNKADM   
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADM-SG 120

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKI 195
           +R V    G+ LA EYG+ F ETSAKT LNVE  F ++A+++K R     S  +P   K 
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR-----SVEQPDEPKF 175

Query: 196 NQPDQAGGVGQAAQKSACC 214
              D    V +  + S CC
Sbjct: 176 KIQDY---VEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  200 bits (510), Expect = 5e-66
 Identities = 87/158 (55%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +LLLIGDSGVGK+CLL RF+D  F +S I+TIG+DFK++TIE+DG ++++QIWDTAGQER
Sbjct: 2   RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           ++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V K+L+GNKAD +E K
Sbjct: 62  YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQK 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           R V   +G  LA EYG+ FFETSA TN N+++ F  + 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  196 bits (500), Expect = 2e-64
 Identities = 82/166 (49%), Positives = 118/166 (71%), Gaps = 2/166 (1%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D L K++LIGDS VGK+C++ RF  G+F+     TIG+DF ++T+E+ GKR+KLQIWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTIT +YYR A G ++ YD+T  SSF ++ +WI  +E++ + NV  +L+GNK D+
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDL 120

Query: 133 DESKRAVPTSKGQALADEYGIKF-FETSAKTNLNVEQVFFSIARDI 177
           +E +R V   +   LA+ YGI    ETSAK + NVE+ F  +A ++
Sbjct: 121 EE-QREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  195 bits (498), Expect = 8e-64
 Identities = 84/168 (50%), Positives = 116/168 (69%), Gaps = 12/168 (7%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------G 61
           YD LIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +  +           
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDN 120
            R+ LQ+WDTAGQERFR++TTA++R AMG LL++D+T E SF N+RNW+  ++ HA  +N
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCEN 120

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168
            + VL+GNKAD+   +R V   + + LAD+YGI +FETSA T  NVE+
Sbjct: 121 PDIVLIGNKADL-PDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  193 bits (492), Expect = 4e-63
 Identities = 77/161 (47%), Positives = 108/161 (67%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GDS VGKS ++LRF    F+ +  +TIG  F  +T+ LD   +K +IWDTAGQER
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           +R++   YYRGA   ++VYD+T E SF   ++W++ +++H   N+   L GNKAD+ ESK
Sbjct: 63  YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADL-ESK 121

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           R V T + Q  ADE G+ F ETSAKT  NV ++F  IAR +
Sbjct: 122 RQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  190 bits (485), Expect = 3e-62
 Identities = 82/164 (50%), Positives = 117/164 (71%), Gaps = 1/164 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E+ G++IKLQIWD
Sbjct: 3   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+A++ V  +LVGNK 
Sbjct: 63  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKI 122

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           D+ E +R V   + +  +D   + + ETSAK + NVE++F  +A
Sbjct: 123 DLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  191 bits (486), Expect = 1e-61
 Identities = 89/212 (41%), Positives = 131/212 (61%), Gaps = 5/212 (2%)

Query: 7   RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
           R   +YD L K++LIGDSGVGKS +L RF+   F     +TIG++F  RT++++GK +K 
Sbjct: 4   RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 63

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126
           QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ 
Sbjct: 64  QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 123

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 186
           GNK+D++   R+V    GQALA++ G+ F ETSA    NVE+ F +I  +I   ++    
Sbjct: 124 GNKSDLNHL-RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKAL 182

Query: 187 RSEPSTIKINQPDQAGGVG----QAAQKSACC 214
            ++ +      P Q   +         K  CC
Sbjct: 183 AAQEAAANSGLPGQGTTINVADTSGNNKRGCC 214

Length = 216

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  183 bits (467), Expect = 9e-59
 Identities = 77/172 (44%), Positives = 117/172 (68%), Gaps = 9/172 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75
           +L++IGDS VGKS LL RF++G F      T+G+DF  R IE+  G RIKLQ+WDTAGQE
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR----NIEQHASDNVNKVLVGNKAD 131
           RFR+IT +YYR ++G+LLV+D+T+  SF ++ +W+     +I+ H       +LVG+K D
Sbjct: 64  RFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHR---PVFILVGHKCD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
           ++ S+R V   + + LA + G+K+ ETSA+T  NVE+ F  + ++I +R+  
Sbjct: 121 LE-SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKR 171

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  181 bits (461), Expect = 2e-58
 Identities = 68/162 (41%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR+ +  F     +T    F  +T+ + GKRI L IWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           R+  +   YYR A G +LVYD+TD  SF  ++ WI+ ++Q   +N++ V+VGNK D+ E 
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDL-ER 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V  S+ +  A   G K FETSAKT   +E++F S+A+ +
Sbjct: 120 QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  180 bits (457), Expect = 6e-58
 Identities = 78/165 (47%), Positives = 109/165 (66%), Gaps = 1/165 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K ++IGD GVGKSCLL +F++  F      TIG++F  R IE++G++IKLQIWDTAGQ
Sbjct: 2   IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           ERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N    L+GNKAD++ 
Sbjct: 62  ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
             R V   + +  ADE G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 122 Q-RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  178 bits (454), Expect = 2e-57
 Identities = 78/161 (48%), Positives = 103/161 (63%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K L+IG +G GKSCLL +F +  F      TIG++F  R + + GK +KLQIWDTAGQER
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FR++T +YYRGA G LLVYD+T   SFN + NW+ +    AS ++  +LVGNK D+++  
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLED-D 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           R V   +    A E G+ F ETSA T  NVE+ F   AR I
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  175 bits (447), Expect = 4e-56
 Identities = 72/169 (42%), Positives = 108/169 (63%), Gaps = 6/169 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + LQIWDTAGQER
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADM 132
           F+++  A+YRGA   +LVYDVT+  SF ++ +W       AS    +N   V++GNK D+
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 121

Query: 133 DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +E KR V T K Q      G I +FETSAK  +NV+Q F +IAR   ++
Sbjct: 122 EE-KRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQ 169

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  174 bits (444), Expect = 6e-56
 Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +GD  VGK+ ++ RF   +F   +  TIGIDF  +T+ +D K ++LQ+WDTAGQER
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF+N   WI ++     ++V  VLVGNK D+ + K
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-K 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           R V T +G+  A E    F ETSAK   NV+Q+F  IA
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIA 158

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  174 bits (444), Expect = 7e-56
 Identities = 79/168 (47%), Positives = 113/168 (67%), Gaps = 6/168 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGDS VGK+CL  RF  G F      TIG+DF+ RT+E+DG+RIK+Q+WDTAGQER
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 77  FR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE 134
           FR ++   YYR    ++ VYDVT+ +SF+++ +WI   EQH+  + V ++LVGNK D+ E
Sbjct: 64  FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAK---TNLNVEQVFFSIARDIKQ 179
             + VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K 
Sbjct: 124 QIQ-VPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLKS 170

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  176 bits (446), Expect = 1e-55
 Identities = 96/207 (46%), Positives = 127/207 (61%), Gaps = 11/207 (5%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD   K+LLIGDSGVGKS LL+ F   S       TIG+DFKI+ + + GKR+KL IWDT
Sbjct: 11  YDLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDT 69

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD-NVNKVLVGNK 129
           AGQERFRT+T++YYR A GI+LVYDVT   +F N+ + W + +E ++++ +  K+LVGNK
Sbjct: 70  AGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNK 129

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ--RLADTDSR 187
            D  ES+R V   +G ALA E+G  F E SAKT  NVEQ F  +A  I +   L +  S 
Sbjct: 130 VDR-ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEGST 188

Query: 188 SEPSTIKINQPDQAGGVGQAAQKSACC 214
           +    I   +P+      Q      CC
Sbjct: 189 AVKRNILKQKPEH-----QPPPNGGCC 210

Length = 211

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  169 bits (430), Expect = 8e-54
 Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L +RF  G F   +  TI  D   + I +DG+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES 135
           F  +   Y R   G +LVY +T   SF  I+N    I      ++V  VLVGNK D++  
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            R V T +G+ALA+E+G  F ETSAKTN+N++++F ++ R+I
Sbjct: 120 -RQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  167 bits (424), Expect = 2e-52
 Identities = 79/177 (44%), Positives = 128/177 (72%), Gaps = 2/177 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++++IG  GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I+LQIWDTAGQE
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D  E+
Sbjct: 61  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC-ET 119

Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 191
            R +   +G+  A +  G++F E SAK N NV+++F  +  DI +++     R+E S
Sbjct: 120 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILRNELS 176

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  164 bits (417), Expect = 1e-51
 Identities = 81/170 (47%), Positives = 110/170 (64%), Gaps = 2/170 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YD L+K LL+GDS VGK  +L    DGS  + +   +GID+K  TI LDG+R+KLQ+WD
Sbjct: 2   AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWD 61

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           T+GQ RF TI  +Y RGA GI+LVYD+T+  SF+ I  WI+ I++HA   V K+LVGN+ 
Sbjct: 62  TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRL 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            +   KR V T + QA A+  G+ FFE S   N N+ + F  +AR +  R
Sbjct: 121 HL-AFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMR 169

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  152 bits (386), Expect = 4e-47
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I+ +   I +    D+V  VLVGNK D+ ES
Sbjct: 61  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDL-ES 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V T +G+ LA ++G  F ETSAK  +NV++ F+ + R+I+++
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRKK 164

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  151 bits (385), Expect = 8e-47
 Identities = 69/165 (41%), Positives = 97/165 (58%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+DG+   L I DTAGQE 
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES 135
           F  +   Y R   G LLVY +TD  SF  I  +   I      D+V  VLVGNK D+ E+
Sbjct: 63  FSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDL-EN 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V T +G+ LA ++G  F ETSAK  +NV++ F+ + R+I++ 
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  149 bits (379), Expect = 5e-46
 Identities = 56/167 (33%), Positives = 99/167 (59%), Gaps = 6/167 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++ +G+SGVGKSC++ R+ +G F + ++ TIGID+ ++ + +  K +++  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----ASDNVNKVLVGNKA 130
            +  +   +Y+   G+LLVYDVTD  SF  + +W++ ++Q        +N+  V+  NK 
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D     RAV   +G+  A+  G K+FETSA T   V ++F ++   I
Sbjct: 121 D-LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  150 bits (380), Expect = 1e-45
 Identities = 64/207 (30%), Positives = 111/207 (53%), Gaps = 16/207 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAGQE 75
           K+L+IGD GVGK+ ++ R+  G F+  +  TIG+DF ++ IE D   + +LQ+WD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNKAD 131
           RF  +T  YY+GA+G ++V+DVT  S+F  +  W  +++   +    +    +L+ NK D
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKCD 121

Query: 132 MDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI---KQRLADTDSR 187
           + + + A    +      E G I +FETSAK N+N+E+    + ++I    + L   +  
Sbjct: 122 LKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQSPEPD 181

Query: 188 SEPSTIKINQPDQAGGVGQAAQKSACC 214
            +       +          ++  +CC
Sbjct: 182 EDNVIDLKQET-------TTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  149 bits (378), Expect = 2e-45
 Identities = 73/216 (33%), Positives = 103/216 (47%), Gaps = 21/216 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GD GVGK+ LL R     F   +  TIG     +TIE   + IKLQ+WDTAGQE
Sbjct: 6   FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 76  RFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--- 131
            +R++   YYRGA GIL+VYD T  ESS      W+  + + A D+V  +LVGNK D   
Sbjct: 66  EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125

Query: 132 --------MDESKRAVPTSKGQALADE---YGIKFFETSAK--TNLNVEQVFFSIARDIK 178
                   +++  R V        A           ETSAK  T  NV ++F  + R + 
Sbjct: 126 EQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185

Query: 179 QRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           + +     ++E   +            QAA  S  C
Sbjct: 186 EEIEKLVLKNELRQLDRLNNPIE----QAALASFNC 217

Length = 219

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  136 bits (346), Expect = 6e-41
 Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++GD  VGK+CLL+ ++   F T ++ T+  D     + +DGK++ L +WDTAGQE
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      LL + V   SSF N++  W   I+ +   NV  +LVG K D+  
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVGTKIDLRD 118

Query: 133 DESKRA--------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           D +           +   +G+ LA E G +K+ E SA T   +++VF
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  134 bits (339), Expect = 4e-40
 Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 7/168 (4%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + LQIWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK---VLVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A          V++GNK 
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 124

Query: 131 DMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDI 177
           D+   +R V T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 125 DI--PERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  134 bits (338), Expect = 7e-40
 Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAG 73
           IK++++G+  VGKS ++ RF  G FT  +  TIG+DF  + I L    + ++L +WDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM- 132
           QE F  IT AYYRGA   +LV+  TD  SF  I +W   +E    D +  VLV  K D+ 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLVQTKIDLL 119

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           D++   +   + +ALA    +  F TS K + NV ++F
Sbjct: 120 DQA--VITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  131 bits (331), Expect = 6e-39
 Identities = 65/164 (39%), Positives = 98/164 (59%), Gaps = 3/164 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L L+F    F   +  T   D   + + LDG+ ++L I DTAGQE 
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQED 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDES 135
           +  I   Y+R   G LLV+ +TD  SF  +  +   I +    DNV  +LVGNK D+++ 
Sbjct: 61  YAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED- 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           KR V   +   LA+++G+ + ETSAKT  NV++VFF + R+I+Q
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  128 bits (323), Expect = 1e-37
 Identities = 63/163 (38%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ +    SF +I  +   I++   SD+V  VLVGNK D+  +
Sbjct: 62  YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL--A 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
            R V T +GQ LA  YGI + ETSAKT   VE+ F+++ R+I+
Sbjct: 120 ARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  126 bits (320), Expect = 4e-37
 Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 15/166 (9%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           L+++GD  VGK+CLL+ ++  +F   ++ T+  +     +E+DGK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM---- 132
             +    Y      L+ + V   +SF N++  W   ++     NV  +LVG K D+    
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVGTKLDLRNDK 118

Query: 133 -------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                   + +  V   +GQALA   G +K+ E SA T   V +VF
Sbjct: 119 STLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score =  126 bits (318), Expect = 5e-37
 Identities = 63/165 (38%), Positives = 99/165 (60%), Gaps = 8/165 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI  D   + IE+D ++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIRNIEQHASDNVNKVLVGNKADMD 133
           F  +   Y +   G  LVY +T + SFN++   R  I  ++   +++V  +LVGNK D+ 
Sbjct: 62  FTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKD--TEDVPMILVGNKCDL- 118

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           E +R V   +GQ LA ++G   F ETSAK+ +NV+++F+ + R I
Sbjct: 119 EDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  124 bits (313), Expect = 4e-36
 Identities = 65/163 (39%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F T +  TI  D   +  E+DG+  +L I DTAGQE 
Sbjct: 4   KLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQEE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  +  +   I +    D    +LVGNKAD+ E 
Sbjct: 63  FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL-EH 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
           +R V   +GQ LA +  I + ETSAK  +NV++ F  + R I+
Sbjct: 122 QRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score =  123 bits (309), Expect = 2e-35
 Identities = 62/164 (37%), Positives = 101/164 (61%), Gaps = 7/164 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNKADMD 133
           F  +   Y +   G +LVY +T +S+FN+   +R  I  ++   +++V  +LVGNK D+ 
Sbjct: 62  FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD--TEDVPMILVGNKCDL- 118

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           E +R V   +GQ LA ++G  F ETSAK  +NV ++F+ + R I
Sbjct: 119 EDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  123 bits (310), Expect = 2e-35
 Identities = 65/208 (31%), Positives = 102/208 (49%), Gaps = 24/208 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           +K++++G   VGK+ L+ R+    F    +  TIG  F  + + +  + + L IWDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI---RNIEQHASDNVNKVLVGNKAD 131
           ER+  ++  YYRGA   ++ YD+TD SSF   + W+   +N+E+H        L G K+D
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEH----CKIYLCGTKSD 116

Query: 132 M---DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS 188
           +   D S R V     Q  ADE   + FETS+KT  NV+++F  +A D   R        
Sbjct: 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR-------- 168

Query: 189 EPSTIKINQPDQAGGVGQAAQKS--ACC 214
                     ++   +GQ       +CC
Sbjct: 169 ---ANNQMNTEKGVDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  121 bits (305), Expect = 5e-35
 Identities = 60/162 (37%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F ++   Y +   G ++VY + ++ +F +I+     I +    + V  +LVGNK D+ ES
Sbjct: 62  FASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL-ES 120

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V +++G+ALA+E+G  F ETSAK+   V ++F  I R +
Sbjct: 121 EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score =  121 bits (304), Expect = 7e-35
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 8/165 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F    F  S+  TI   ++ + +E+DG++  L+I DTAG E+
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTEQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNKADMD 133
           F  +   Y +   G LLVY VT E+S N    +R  +  I+   SDNV  VLVGNKAD+ 
Sbjct: 62  FTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD--SDNVPMVLVGNKADL- 118

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           E  R V    G +L+ ++G + F+ETSA+   NV++VF  + R I
Sbjct: 119 EDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  121 bits (305), Expect = 1e-34
 Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 4/174 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F    F   +  TI   ++ +   +D +   L I DTAGQE 
Sbjct: 7   KLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L VY +T  SSF  I ++   I +    D V  +LVGNK D+D S
Sbjct: 66  YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-S 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           +R V T +GQ LA  +GI F ETSAK  +NV++ F+ + R+I++ L + D  S+
Sbjct: 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE-DMPSQ 177

Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  120 bits (302), Expect = 2e-34
 Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD  VGK+CL+ RF    F  ++  TIG+DF++   E+ G    LQ+WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADMDES 135
           F+ I + YYRGA  I++V+D+TD +S  + R W+ + ++++   +V   LVG K D+   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 136 KRAVPTSKGQA-LADEYGIKFFETSAKTNLNVEQVFFSIA 174
            +     +    LA E   +++  SA T  NV   FF +A
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  120 bits (302), Expect = 3e-34
 Identities = 59/187 (31%), Positives = 103/187 (55%), Gaps = 5/187 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGK+ L ++     F  ++  TI   ++ + + +DG+   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVV-VDGQPCMLEVLDTAGQEE 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKADMD 133
           +  +   + R   G +LVY +T  S+F  +  +   I+ ++  ++ +V  ++VGNK D  
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 193
              R V T +G ALA   G +F E SAKTN+NVE+ F+++ R ++Q+           T 
Sbjct: 120 YE-REVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTK 178

Query: 194 KINQPDQ 200
           K  +  +
Sbjct: 179 KKEKKKR 185

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  116 bits (293), Expect = 9e-33
 Identities = 53/169 (31%), Positives = 93/169 (55%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQ 74
           +K++++GD G GK+CLL+ ++ GSF   ++ T+  +  + T+++ +GK I+L +WDTAGQ
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    Y     IL+ Y V + +S +N+ + W   +  H       VLVG K D+ 
Sbjct: 63  EDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLKTDLR 121

Query: 134 ESKRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           + K +           V   +G+++A   G + + E SAK   NV++VF
Sbjct: 122 KDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score =  115 bits (289), Expect = 1e-32
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 19  LLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++G  GVGKS LL     G          TT   D      ELD  ++KL + DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVY--VKELDKGKVKLVLVDTPGLD 58

Query: 76  RF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
            F       +     RGA  ILLV D TD  S  + +  I  + +   + +  +LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLI--LRRLRKEGIPIILVGNKI 116

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
           D+ E +      + + LA   G+  FE SAKT   V+++F  +  
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  115 bits (289), Expect = 2e-32
 Identities = 63/172 (36%), Positives = 94/172 (54%), Gaps = 15/172 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----TTIGIDFKIRTIELDGKRIKLQIWDTA 72
           K+ ++G SGVGKS L +RF     T  FI      +   +  R + +DG+++ L+I DT 
Sbjct: 1   KIAVLGASGVGKSALTVRF----LTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTP 55

Query: 73  GQERFRT--ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGN 128
           GQ++           R A G +LVY +TD SSF+ +   ++ I +       +  +LVGN
Sbjct: 56  GQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGN 115

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQ 179
           KAD+  S R V T +GQ LA E G  FFE SA  N L V+ VF  + R++++
Sbjct: 116 KADLLHS-RQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  115 bits (289), Expect = 3e-32
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 5/163 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++F +G F  S+  TI   F  + I   G+   L+I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDE 134
           +  +   Y  G  G +LVY VT   SF  ++  I +  ++    ++V  VLVGNK+D+  
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLH- 119

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            +R V   +G+ LA+ +G  F E+SAK N NVE+ F  +  +I
Sbjct: 120 MERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI 162

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  113 bits (284), Expect = 1e-31
 Identities = 50/160 (31%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R   G F   ++ T+G++        +  +I+  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R++     +N+  VL GNK D+   
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDI--K 117

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
            R V   +      +  ++++E SAK+N N E+ F  +AR
Sbjct: 118 DRKVKPKQITFHR-KKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  114 bits (287), Expect = 1e-31
 Identities = 62/206 (30%), Positives = 98/206 (47%), Gaps = 11/206 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQ 74
           IK++++GD   GK+ L+ RF+   F  S+  TIG+DF  R I L G   + LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 131
           +    +   Y  GA  + LVYD+T+  SF N+ +W   ++ + + +      VLVGNK D
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI------KQRLADTD 185
           + E  R V   K    A E  ++    SAKT   V   F  IA ++      +  L  + 
Sbjct: 121 L-EHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVKLSQAELEQSQ 179

Query: 186 SRSEPSTIKINQPDQAGGVGQAAQKS 211
              +    + ++      V ++  K 
Sbjct: 180 RVVKADVSRYSERTLREPVSRSVNKR 205

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  113 bits (283), Expect = 1e-31
 Identities = 62/164 (37%), Positives = 93/164 (56%), Gaps = 6/164 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRF-SDGS-FTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTA 72
           +  ++GD  VGKS L+  F SDG+ F  ++  T G D  ++T+ +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKAD 131
           GQE F  +    +     + +VYDVT+E SFNN   WI  +  H+   +   VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
           +   +R V  ++ QALA    +KF+ETSAK  +  E  F S+AR
Sbjct: 122 L-TDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  111 bits (279), Expect = 2e-30
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 4/160 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD GVGK+  + R   G F   +I T+G++        +   I   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY      ++++DVT   ++ N+ NW R+I +   +N+  VLVGNK D+ + 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGNKVDVKD- 127

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
            R V   +      +  +++++ SAK+N N E+ F  +AR
Sbjct: 128 -RQVKARQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165

Length = 215

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  108 bits (271), Expect = 7e-30
 Identities = 57/136 (41%), Positives = 83/136 (61%), Gaps = 1/136 (0%)

Query: 39  SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT 98
           +F  ++ +TIGIDF  +T+ LD   ++LQ+WDTAGQERFR++  +Y R +   ++VYD+T
Sbjct: 4   TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDIT 63

Query: 99  DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET 158
           +  SF N   WI++I      +V   LVGNK D+ +  R V   +G   A EY   F ET
Sbjct: 64  NRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHET 122

Query: 159 SAKTNLNVEQVFFSIA 174
           SAK   N++ +F  IA
Sbjct: 123 SAKAGHNIKVLFKKIA 138

Length = 176

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  107 bits (269), Expect = 1e-29
 Identities = 49/158 (31%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           IK++++GD  VGKS LL R        T +      ++    IE DGK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVT--DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           E +  I   YYR     L V+D+          +    + I  HA   V  +LVGNK  +
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNK--I 119

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           D     + T      A   G      SA+T  N++  F
Sbjct: 120 DLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  107 bits (269), Expect = 2e-29
 Identities = 57/167 (34%), Positives = 90/167 (53%), Gaps = 15/167 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   ++ H   NV  +LVGNK D+  D
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 134 ES---------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E          +  V   +G+A+A++ G   + E SAKT   V +VF
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score =  106 bits (267), Expect = 3e-29
 Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS + ++F   SF      TI   +K +   +D +   L I DTAGQ  
Sbjct: 4   KIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQAE 62

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y R   G ++ Y VTD  SF     +   I +   ++++  VLVGNK D+ E 
Sbjct: 63  FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDL-EQ 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V T +G+ LA E+   FFETSA     ++  F  + R+I+++
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRK 166

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  103 bits (258), Expect = 8e-28
 Identities = 53/168 (31%), Positives = 91/168 (54%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++ ++   + T ++ T   +F +  + +DGK ++LQ+ DTAGQ+
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQD 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
            F  +    Y      LL + V + SSF NI   WI  I +H +     +LVG +AD+  
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRT 118

Query: 135 S-----------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                       ++ V  S+ +ALA++ G  ++ E SA T  N+++VF
Sbjct: 119 DVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  102 bits (256), Expect = 1e-27
 Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 5/155 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GDS VGKS L+ RF    +    ++T  +       + +GK I +  WDTAGQE
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF+T+  +YY  A   +LV+DVT + ++ N+  W   + ++    +  ++V NK D+D S
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                T K    A+++ +  +  SA    NV ++F
Sbjct: 120 V----TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 98.7 bits (246), Expect = 3e-26
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++++ G  GVGKS L+LRF  G+F  S+I TI   ++ + I        LQI DT G  +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSHQ 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK---VLVGNKADMD 133
           F  +           +LVY +T + S   ++     I +   +N+ K   +LVGNK D +
Sbjct: 62  FPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD-E 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
              R V +S+G ALA  +   F ETSAKTN NV+++F
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  100 bits (250), Expect = 3e-26
 Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 8/178 (4%)

Query: 1   MAAPPARARADYDC-LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL 59
           MA P    +   D    KL+++GD G GK+  + R   G F   +  TIG++        
Sbjct: 1   MALPN---QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT 57

Query: 60  DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD 119
           +  +I+   WDTAGQE+F  +   YY      ++++DVT   ++ N+  W R++ +   +
Sbjct: 58  NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCE 116

Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           N+  VL GNK D+    R V  +K      +  ++++E SAK+N N E+ F  +AR +
Sbjct: 117 NIPIVLCGNKVDVKN--RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 97.1 bits (242), Expect = 3e-25
 Identities = 47/165 (28%), Positives = 88/165 (53%), Gaps = 6/165 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+ +GK+ L++++ +G F   +I T+G++F  +TI + G  I   IWD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK----AD 131
            F  +     + A+ IL ++D+T +S+ N+I+ W R      +     +LVG K    AD
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGF-NKTAIPILVGTKYDLFAD 119

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF-FSIAR 175
           +   ++   T + +  A          S   ++NV+++F F +A+
Sbjct: 120 LPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 95.9 bits (239), Expect = 1e-24
 Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 6/167 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++L+GDSGVGKS L   F+ G +  S     G D   RT+ +DG+   L ++D   QE 
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
              +  +  +     ++VY VTD SSF   + +R  +R   Q   +++  +LVGNK+D+ 
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQA--EDIPIILVGNKSDLV 119

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            S R V   +G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 120 RS-REVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLR 165

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 93.5 bits (232), Expect = 9e-24
 Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%)

Query: 21  IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 80
           +GD G GK+  + R   G F   ++ T+G++        +   I+  +WDTAGQE+F  +
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 81  TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP 140
              YY      ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + K    
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKDRK---V 116

Query: 141 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 117 KAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 92.2 bits (229), Expect = 1e-23
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 119

Query: 135 SKRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
            K             +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (227), Expect = 5e-23
 Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 13/165 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+ LL  F+ G F   +  T+  +  +    +DGK ++L +WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE- 134
           +  +    Y  A  IL+ + +    S  N+R  WI  + ++   NV  +LVG K D+ + 
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQE 120

Query: 135 --------SKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF 170
                   +   VP  + + +A   G K + E SA T   V+ VF
Sbjct: 121 AVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 57/166 (34%), Positives = 95/166 (57%), Gaps = 13/166 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++  +F T ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 2   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    YRGA   LL + +  ++S+ N+ + WI  + +H +  V  VLVG K D+ +
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPEL-RHYAPGVPIVLVGTKLDLRD 119

Query: 135 SKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVF 170
            K+       AVP  T++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 120 DKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVF 165

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 15/186 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  ++  +T  +DG+ + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-VDGRTVSLNLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
            +  + T  Y      ++ + +   SS+ N+R+ W   +  H   NV  +LVG K D+  
Sbjct: 63  EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRN 121

Query: 135 SKRAV---------PTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
               +         P +  +G ALA +   +K+ E SA     V++VF    R +     
Sbjct: 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTP 181

Query: 183 DTDSRS 188
             D++S
Sbjct: 182 IKDTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 86.3 bits (214), Expect = 6e-22
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+++IGD G GKS LL +   G F    +   G    + T+E+DG    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNK 129
            +     + + A  ILLVYD+TD  S N    +  W+ N+ +     +  +LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 83.4 bits (206), Expect = 1e-19
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 37/187 (19%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD  VGK+ LL R+ +  F  + ++T+G  F ++          + IWDTAG+E
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAFYLK----QWGPYNISIWDTAGRE 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  + + Y RGA  ++L YDV++  S   + +    +   A+++    +VGNK D+ E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 136 K------------------RAVPTSKGQALADEYGIK--------------FFETSAKTN 163
                              R V     +A                       FETSAKT 
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 164 LNVEQVF 170
            NV+++F
Sbjct: 176 YNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD   GK+ LL  F+ G F   +  T+  ++ I  I +DG  ++L +WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--- 132
           F  + +  Y     I+L + V +  S  N+ + W+  I  H    V  VLV  K D+   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVALKCDLREP 119

Query: 133 ----DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
               D     +   +G A+A      ++ E SAK N  V + F   AR
Sbjct: 120 RNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 47/168 (27%), Positives = 90/168 (53%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + GK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+  
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIGTQIDLRD 118

Query: 133 ---------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVF 170
                    D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 119 DPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQ 74
            KL+L+G  GVGK+ L  +     F     +T GI+    +    + K+I+L +WD  GQ
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           E +      +       LLV+D+      + +  W+R I+     +   +LVG   D   
Sbjct: 62  EIYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVGTHIDESC 120

Query: 135 SKRAVPTSKGQALADEYG---IKFF-ETSAKTNLNVEQVFFSIAR 175
            +      K     ++     I      S K    + ++  +IA+
Sbjct: 121 DED--ILKK---ALNKKFPAIINDIHFVSCKNGKGIAELKKAIAK 160

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 76.3 bits (188), Expect = 2e-17
 Identities = 48/169 (28%), Positives = 91/169 (53%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+GDS  GK+ LL  F+  SF  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTA-SFEVDKQRIELSLWDTSGSP 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y  +  +L+ +D++   + +++ + W   + +    N   +LVG K+D+  
Sbjct: 61  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVGCKSDLRT 119

Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTN-LNVEQVF 170
                    +KR +P S  +G+ LA + G   + E SAKT+  +V  VF
Sbjct: 120 DLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++   F + ++ T+  ++ + T+ + G+   L ++DTAGQE
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+ +
Sbjct: 61  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 119

Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                        + +    G+ LA +   +K+ E SA T   ++ VF
Sbjct: 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 74.1 bits (182), Expect = 2e-16
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+ +G +GVGK+ L+ RF   +F      T+  +   +  E+ G ++ + I DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN--IEQHASDNVNKVLVGNKADMDE 134
           F  +     +      LVY V D  SF  ++  +R   +E      V  V+VGNK D   
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKR-LREEILEVKEDKFVPIVVVGNKIDS-L 117

Query: 135 SKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVF 170
           ++R V  +   +  + ++   F E SAK N NV +VF
Sbjct: 118 AERQVEAADALSTVELDWNNGFVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 10/158 (6%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNVKFTVWDVGGQDK 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVL--VGNKADMDE 134
            R +   YY    G++ V D +D       +N +  +     +     L  + NK D+  
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNE-EELKGAPLLILANKQDLPG 114

Query: 135 SKRAVPTSKGQALADEYGIKF--FETSAKTNLNVEQVF 170
           +       +   L    G ++     SA T   +++  
Sbjct: 115 ALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 22/173 (12%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +++++G S VGK+ ++ RF  G F   +  TI  DF  +   + G+  +L I DT+G   
Sbjct: 2   RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHP 60

Query: 77  FR-----TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-------- 123
           F      +I T    G +  +LV+ + +  SF  +      I +  S   NK        
Sbjct: 61  FPAMRRLSILT----GDV-FILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP 115

Query: 124 -VLVGNKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
            V+ GNKAD D   R V   +  Q +  +    +FE SAK N N++++F ++ 
Sbjct: 116 MVICGNKADRDFP-REVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 17/165 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-----ITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++++LIGD GVGKS L++      F  +        TI  D    T E    R+   I D
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADV---TPE----RVPTTIVD 55

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNK 129
           T+ + + R    A  R A  I LVY V   S+   IR  W+  I +     V  +LVGNK
Sbjct: 56  TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNK 114

Query: 130 ADM-DESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFF 171
           +D+ D S +A    +   + +E+       E SAKT +NV +VF+
Sbjct: 115 SDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 159

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 43/171 (25%), Positives = 87/171 (50%), Gaps = 15/171 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPY 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 124

Query: 134 -------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 125 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 65.0 bits (158), Expect = 6e-13
 Identities = 45/188 (23%), Positives = 90/188 (47%), Gaps = 18/188 (9%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GD+  GK+ LL  F+  ++  S++ T+  ++   + E+D  RI+L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTA-SFEIDKHRIELNMWDTSGSSY 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD--- 133
           +  +    Y  +  +L+ +D++   + +++    +   Q    N   VLVG K DM    
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDL 121

Query: 134 ------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA-----RDIKQ 179
                   +R +P +  +G  LA + G + + E S++ + N  +  F +      R    
Sbjct: 122 STLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHP 181

Query: 180 RLADTDSR 187
            L  + SR
Sbjct: 182 SLKRSTSR 189

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 62.7 bits (152), Expect = 3e-12
 Identities = 54/194 (27%), Positives = 83/194 (42%), Gaps = 45/194 (23%)

Query: 15  LIKLLLIGDSGVGKSCLLL------RFSDGSFTTSFITTI-GIDFKIRTIEL-------- 59
            IK +++GD+ VGK+ L+         +      + + T+  ID      E+        
Sbjct: 2   TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 61

Query: 60  DGKRIKLQIWDTAG----QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIE 114
           DG  + L++WDT G      RF     AY R  + +LL + +   +S  N++  W   I 
Sbjct: 62  DGVSVSLRLWDTFGDHDKDRRF-----AYGRSDV-VLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 115 QHASDNVNKVLVGNKADM-----DESKRA-------------VPTSKGQALADEYGIKFF 156
                 V  +LVG K D+     DE  RA             +P   G+A+A E GI ++
Sbjct: 116 HFCPR-VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY 174

Query: 157 ETSAKTNLNVEQVF 170
           ETS  T   V+ VF
Sbjct: 175 ETSVVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 61.5 bits (149), Expect = 5e-12
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+    K I   +WD  GQ+
Sbjct: 14  MRILMVGLDAAGKTTILYKLKLGESVTT-IPTIG--FNVETVTY--KNISFTVWDVGGQD 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           + R +   YY    G++ V D  D    +  R  + R + +    +   ++  NK D+ +
Sbjct: 69  KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128

Query: 135 SKRA 138
           + +A
Sbjct: 129 AMKA 132

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           K++++G    GK+ +L +F  G    TS   TIG + +    E+  K I+  +WD  GQE
Sbjct: 17  KVIIVGLDNAGKTTILYQFLLGEVVHTS--PTIGSNVE----EIVYKNIRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
             R+    YY     ++LV D TD       +  +  +  H       +LV  NK D+  
Sbjct: 71  SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130

Query: 135 SKRAVPTSKGQALAD 149
           +      S+   L  
Sbjct: 131 AMTPAEISESLGLTS 145

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 5/117 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++LL+G    GKS LL +       T+ I T+G  F +  ++L+   + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVG--FNVEMLQLEKH-LSLTVWDVGGQEK 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADM 132
            RT+   Y     G++ V D +DE+  +  +  +++I ++     V  VL+ NK D+
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 57.4 bits (138), Expect = 3e-10
 Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 40/225 (17%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
              P   R       KL+L+GD   GK+ +L   +   +  +++ T+  ++    +E + 
Sbjct: 6   NPQPLVVRC------KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-CLETEE 58

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN 120
           +R++L +WDT+G   +  +    Y  +  +LL +D++    F++ ++ W   I  +   +
Sbjct: 59  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-S 117

Query: 121 VNKVLVGNKADM-----------DESKRAVPTSKGQALADEYGIK-FFETSAKTN-LNVE 167
              +L+G K D+           ++ +  +   +G A+A + G + + E SA T+  ++ 
Sbjct: 118 TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIH 177

Query: 168 QVFFSIA----------------RDIKQRLADTDSRSE--PSTIK 194
            +F + +                R + +RL    SRSE   ST K
Sbjct: 178 SIFRTASLLCINKLSPLAKKSPVRSLSKRLLHLPSRSELISSTFK 222

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 29/165 (17%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-----DGKRIKLQIWD 70
           +K+L++GDSGVGKS L+          +   T+G    +R         + K   +++WD
Sbjct: 1   VKVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWD 60

Query: 71  TAGQ----ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI------------- 113
             G     E  ++    +Y    GI+ V+D+T++ S  N+  W                 
Sbjct: 61  VGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLLVT 120

Query: 114 ------EQHASDNVNKVLVGNKADM-DESKRAVPTSKGQALADEY 151
                 EQ A + V  +++G K D   E+KR    ++   L++++
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQIPEAKRNWVLTRTAFLSEDF 165

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           L+G    GK+ L+   + G F+   I T+G  F +R +      IK  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 80  ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVNKVLVGNKADM 132
           +   Y RG   I+ V D  D       +N + + +E+ + + +  +++GNK D+
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+    K +K  +WD  GQE
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVETVTY--KNVKFTVWDVGGQE 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE 134
             R +   Y+     ++ V D  D       +  +  +       +   +++ NK D+  
Sbjct: 70  SLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG 129

Query: 135 SK 136
           + 
Sbjct: 130 AM 131

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 54.1 bits (130), Expect = 3e-09
 Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K +K  +WD  GQ+
Sbjct: 18  VRILMVGLDAAGKTTILYKLKLGEVVTT-IPTIG--FNVETVEY--KNLKFTMWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADM 132
           + R +   YY+   G++ V D  D     + R  + R + +    +   ++  NK D+
Sbjct: 73  KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 25/142 (17%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIR------------TIELDGKR 63
           +++L++GDSGVGKS L+     GS       TIG    ++            +I+ D +R
Sbjct: 22  VRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSER 81

Query: 64  -IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-- 120
              +++WD +G ER++   + +Y    G++ V+D++   +  +++ W   +    + +  
Sbjct: 82  DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAP 141

Query: 121 ----------VNKVLVGNKADM 132
                     V  +++GNKAD+
Sbjct: 142 LGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 132
           + R +   Y++   G++ V D  D       R  ++ +  E    D V  V   NK D+
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF-ANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 8/119 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I T+G  F + T+    K +K  +WD  GQ+
Sbjct: 10  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG--FNVETVTY--KNVKFNVWDVGGQD 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 132
           + R +   YY G  G++ V D  D    +  R  +  I  ++   D +  V   NK D+
Sbjct: 65  KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVF-ANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 50.7 bits (121), Expect = 4e-08
 Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADM 132
           + R +   Y++   G++ V D  D       R+ + R + +    +   ++  NK D+
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL ++G+   GKS L+ R+  GS+     +  G  FK + + +DG+   L I D  G  
Sbjct: 1   LKLGIVGNLRSGKSALVHRYLTGSYV-QLESPEGGRFK-KEVLVDGQSHLLLIRDEGGAP 58

Query: 76  --RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132
             +F     A       ++ V+ + DE+SF  +      +  +     +  +LVG +  +
Sbjct: 59  DAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAI 111

Query: 133 DESK-RAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
             S  R +  ++ + L AD     ++ET A   LNVE+VF   A+ I
Sbjct: 112 SASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 12/143 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++ +G    GK+ LL    D       + T+       + EL    +K   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDR-LAQHVPTLHPT----SEELTIGNVKFTTFDLGGHEQ 75

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES 135
            R +   Y+    GI+ + D  D   F   +  + ++       NV  +++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--- 132

Query: 136 KRAVPTSKGQALADEYGIKFFET 158
             AV   +   L +  G+    T
Sbjct: 133 PGAVSEEE---LREALGLYGTTT 152

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF-KIRTIELDGKRIKLQIWDTAGQER 76
           ++++G    GK+ +L R     F  + + T G +  KI+    + K +    WD  GQE+
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDES 135
            R +  +Y R   GI+ V D  D       +  +  I + + +    VLV  NK D+  +
Sbjct: 65  LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNA 124

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 46  TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN 105
            T+G++  I TIE+     +L  WD  GQE  R++   YY  + G++ V D TD   FN 
Sbjct: 37  PTVGLN--IGTIEVGK--ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNE 92

Query: 106 IRNWIRNIEQHAS-DNVNKVLVGNKADM 132
            ++    +  + + + V  +++ NK D+
Sbjct: 93  SKSAFEKVINNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 18/160 (11%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G  G GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGQTS 55

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLV---GNKA 130
            R     YY     I+ V D TD       R  I   E HA    + +   ++    NK 
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRD-----RLGISKSELHAMLEEEELKDAVLLVFANKQ 110

Query: 131 DMDESKRAVPTSKGQALADEYGIKF--FETSAKTNLNVEQ 168
           DM  +      ++   L++     +  F+TSA     +++
Sbjct: 111 DMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDE 150

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 23/168 (13%)

Query: 16  IKLLLIGDSGVGKSCLL------------LRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
            K+++IG  G GK+  +               S  S      TT+ +DF   +IELD   
Sbjct: 11  TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFG--SIELDEDT 68

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
             + ++ T GQERF+ +     RGA+G +++ D +   +F+     I +      + +  
Sbjct: 69  -GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLTS-RNPIPV 124

Query: 124 VLVGNKADMDESKRAVPTSK-GQALADEY-GIKFFETSAKTNLNVEQV 169
           V+  NK D+ +   A+P  K  +AL  E   +   E  A         
Sbjct: 125 VVAINKQDLFD---ALPPEKIREALKLELLSVPVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 23/172 (13%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD----- 70
           +++ ++G  GVGK+ ++ +F    F   +I T         + L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 71  ----TAGQE----RFRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASD 119
               TAGQE    RFR +     R +   +LVYD+    SF+    +R  I       + 
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVF 170
               V+VGNK D  +  R  P      L  + +   + E SAK N ++  +F
Sbjct: 116 EPPIVVVGNKRDQ-QRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLF 166

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206679 cd01892, Miro2, Mitochondrial Rho family 2 (Miro2), C-terminal

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 21  IGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
           +G  G GKS LL  F   SF+ +  + TI   + + T+E+ G+  K  I    G++    
Sbjct: 10  LGAKGSGKSALLQAFLGRSFSQNAYSPTIKPRYAVNTVEVPGQE-KYLILREVGEDEEAI 68

Query: 80  ITTAYYRGAMGIL-LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           +       A  +  LVYD +D +SF+     +        + +  + V  KAD+DE +
Sbjct: 69  LLNDAELAACDVACLVYDSSDPNSFSYCAE-VYKKYFMLGE-IPCLFVAAKADLDEQQ 124

Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 180

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
          +++ +G  G GK+ +L +     F    I TIG  F + T+E   K +K  IWD  G+ +
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIG--FNVETVEY--KNLKFTIWDVGGKHK 55

Query: 77 FRTITTAYYRGAMGILLVYD 96
           R +   YY     ++ V D
Sbjct: 56 LRPLWKHYYLNTQAVVFVID 75

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +F +G   ++   T+G  F I+T+E +G   KL IWD  GQ+
Sbjct: 15  MRILMLGLDNAGKTTILKKF-NGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQK 69

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
             R+    Y+     ++ V D +D +   + +  ++ +
Sbjct: 70  SLRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKL 107

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ +L + +    +    T     F I+ ++ DG   KL +WD  GQ 
Sbjct: 16  VRILLLGLDNAGKTTILKQLASEDISHITPTQ---GFNIKNVQADG--FKLNVWDIGGQR 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDE 134
           + R     Y+     ++ V D  D   F      +  + E+     V  ++  NK D+  
Sbjct: 71  KIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Query: 135 SKRAVPTSKGQALAD 149
           +  A   ++   L D
Sbjct: 131 AAPAEEVAEALNLHD 145

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG)

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 50/179 (27%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           L++ G   VGKS L+ + +          FTT  +  +G        +    R   Q+ D
Sbjct: 3   LVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLF-VGH------FDYKYLRW--QVID 53

Query: 71  TAG------QER----FRTITT-AYYRGAMGILLVYDVTDESS---------FNNIRNWI 110
           T G      +ER     + IT  A+ R A  +L   D ++            F  I+   
Sbjct: 54  TPGILDRPLEERNTIEMQAITALAHLRAA--VLFFIDPSETCGYSIEEQLSLFKEIKPLF 111

Query: 111 RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV 169
                    N   ++V NK D+         S+ +   ++ G +  + S  T   V+++
Sbjct: 112 ---------NKPVIVVLNKIDL---LTEEDLSEIEKELEKEGEEVIKISTLTEEGVDEL 158

NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 5/114 (4%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +L++G  G GK+ LL   S      S + T G  F    I      ++L   +  G +  
Sbjct: 2   ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           R     Y  G+ G++ V D  D       R  +  + QH  D +  V++ NK D
Sbjct: 58  RKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPD-LPLVVLANKQD 110

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 10/127 (7%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L++G    GK+ ++ +    +  +  I  T+G  F + + +     +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNKADM 132
           +R +   YY+   GI+ V D +D       ++ +  +  H  D  ++    +   NK D+
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHP-DIKHRRIPILFYANKMDL 116

Query: 133 DESKRAV 139
            ++  AV
Sbjct: 117 PDALTAV 123

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           LL +G    GK+ L+     G        T+G  F    + LD  + ++ I+D  G   F
Sbjct: 2   LLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVG--FTPTKLRLD--KYEVCIFDLGGGANF 56

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDES 135
           R I   YY  A G++ V D +D+     ++  +R + QH   +   +LV  NK D   +
Sbjct: 57  RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
PLN03118	211	Rab family protein; Provisional	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.98
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PTZ00099	176	rab6; Provisional	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
PRK12299	335	obgE GTPase CgtA; Reviewed	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.94
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.92
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.92
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.92
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.92
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.91
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.91
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.91
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.9
PRK03003	472	GTP-binding protein Der; Reviewed	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
PRK15494	339	era GTPase Era; Provisional	99.89
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.89
PRK11058	426	GTPase HflX; Provisional	99.89
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.89
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.88
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
PRK05306	787	infB translation initiation factor IF-2; Validated	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK00089	292	era GTPase Era; Reviewed	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
PRK00093	435	GTP-binding protein Der; Reviewed	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
COG2229	187	Predicted GTPase [General function prediction only	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.84
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.83
PRK10218	607	GTP-binding protein; Provisional	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.83
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.82
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.8
COG2262	411	HflX GTPases [General function prediction only]	99.8
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.79
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.77
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.77
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.76
PRK12736	394	elongation factor Tu; Reviewed	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
COG0218	200	Predicted GTPase [General function prediction only	99.75
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.74
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
COG1084	346	Predicted GTPase [General function prediction only	99.74
CHL00071	409	tufA elongation factor Tu	99.73
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.72
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
PLN00043	447	elongation factor 1-alpha; Provisional	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.72
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.72
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.72
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
KOG1145	683	consensus Mitochondrial translation initiation fac	99.7
PTZ00141	446	elongation factor 1- alpha; Provisional	99.7
COG3596	296	Predicted GTPase [General function prediction only	99.7
PRK13351	687	elongation factor G; Reviewed	99.7
PRK00049	396	elongation factor Tu; Reviewed	99.69
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.69
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.69
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.68
COG1163	365	DRG Predicted GTPase [General function prediction	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.67
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
PLN03127	447	Elongation factor Tu; Provisional	99.67
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.66
KOG0090	238	consensus Signal recognition particle receptor, be	99.65
PRK12739	691	elongation factor G; Reviewed	99.65
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.63
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.63
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.61
PRK09602	396	translation-associated GTPase; Reviewed	99.61
PRK00007	693	elongation factor G; Reviewed	99.61
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.59
PRK12740	668	elongation factor G; Reviewed	99.59
PRK09866	741	hypothetical protein; Provisional	99.58
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.58
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.54
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.54
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.53
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.51
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.51
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.51
PTZ00258	390	GTP-binding protein; Provisional	99.51
PRK14845	1049	translation initiation factor IF-2; Provisional	99.5
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.5
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.49
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.49
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.48
PRK13768	253	GTPase; Provisional	99.45
PRK07560	731	elongation factor EF-2; Reviewed	99.44
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.43
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.42
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.42
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.41
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.4
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.4
PRK09601	364	GTP-binding protein YchF; Reviewed	99.4
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.39
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.39
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.38
PTZ00416	836	elongation factor 2; Provisional	99.38
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.38
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.38
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.35
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.34
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.33
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.31
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.31
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.31
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.31
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.3
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.29
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.28
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.24
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.24
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.22
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.21
KOG0410	410	consensus Predicted GTP binding protein [General f	99.21
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.18
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.17
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.16
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.14
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.09
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.09
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.01
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.0
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.0
PRK12289	352	GTPase RsgA; Reviewed	98.99
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.97
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.97
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.95
PRK12288	347	GTPase RsgA; Reviewed	98.95
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.93
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.92
PRK00098	298	GTPase RsgA; Reviewed	98.9
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.9
KOG2486	320	consensus Predicted GTPase [General function predi	98.89
KOG1143	591	consensus Predicted translation elongation factor	98.89
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.87
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.81
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.79
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.78
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.75
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.74
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.72
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.7
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.69
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.68
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.65
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.65
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.64
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.64
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.64
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.64
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.63
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.59
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.59
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.58
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.56
COG1161	322	Predicted GTPases [General function prediction onl	98.55
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.53
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.53
KOG0460	449	consensus Mitochondrial translation elongation fac	98.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.51
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.5
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.49
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.46
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.45
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.41
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.39
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.38
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.37
PRK12288	347	GTPase RsgA; Reviewed	98.37
PRK10416	318	signal recognition particle-docking protein FtsY;	98.37
cd03112	158	CobW_like The function of this protein family is u	98.35
PRK01889	356	GTPase RsgA; Reviewed	98.35
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.34
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.34
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.33
PRK13796	365	GTPase YqeH; Provisional	98.33
PRK14974	336	cell division protein FtsY; Provisional	98.33
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.31
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.29
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.29
PRK13796	365	GTPase YqeH; Provisional	98.28
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.27
PRK12289	352	GTPase RsgA; Reviewed	98.22
COG3523	1188	IcmF Type VI protein secretion system component Va	98.18
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.15
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.15
COG1162	301	Predicted GTPases [General function prediction onl	98.13
COG1162	301	Predicted GTPases [General function prediction onl	98.12
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.12
PRK13695	174	putative NTPase; Provisional	98.11
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.09
PRK00098	298	GTPase RsgA; Reviewed	98.09
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.08
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.06
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.05
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.02
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.01
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.95
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.94
COG0523	323	Putative GTPases (G3E family) [General function pr	97.92
cd03114	148	ArgK-like The function of this protein family is u	97.91
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.89
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.83
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.83
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.83
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.81
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.77
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.76
KOG2484	435	consensus GTPase [General function prediction only	97.73
TIGR00959	428	ffh signal recognition particle protein. This mode	97.71
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.71
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.68
PRK10867	433	signal recognition particle protein; Provisional	97.67
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.63
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.62
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.57
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.53
PRK08118	167	topology modulation protein; Reviewed	97.52
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.51
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.5
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.46
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.46
PRK07261	171	topology modulation protein; Provisional	97.45
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.44
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.44
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.43
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.42
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.42
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.4
KOG1533	290	consensus Predicted GTPase [General function predi	97.4
cd03111	106	CpaE_like This protein family consists of proteins	97.39
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.38
cd02036	179	MinD Bacterial cell division requires the formatio	97.29
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.28
cd03110	179	Fer4_NifH_child This protein family's function is	97.27
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.27
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.25
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.25
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.23
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.23
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.21
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.19
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.18
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.17
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.16
PRK06217	183	hypothetical protein; Validated	97.15
PF00004	132	AAA: ATPase family associated with various cellula	97.14
smart00382	148	AAA ATPases associated with a variety of cellular	97.14
PRK03839	180	putative kinase; Provisional	97.14
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.11
PRK01889	356	GTPase RsgA; Reviewed	97.11
PRK14530	215	adenylate kinase; Provisional	97.08
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.08
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.08
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.08
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.06
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.06
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.06
PRK13949	169	shikimate kinase; Provisional	97.05
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.04
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.01
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.01
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.0
PRK14532	188	adenylate kinase; Provisional	97.0
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	96.99
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.98
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.98
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.98
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.98
PRK14738	206	gmk guanylate kinase; Provisional	96.97
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.97
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.95
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	96.95
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.95
KOG3929	363	consensus Uncharacterized conserved protein [Funct	96.95
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	96.94
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.94
PRK00625	173	shikimate kinase; Provisional	96.93
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.93
PRK14531	183	adenylate kinase; Provisional	96.93
PTZ00088	229	adenylate kinase 1; Provisional	96.92
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.92
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.92
PRK02496	184	adk adenylate kinase; Provisional	96.91
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	96.9
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	96.9
PRK04195	482	replication factor C large subunit; Provisional	96.9
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.9
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.9
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.9
PRK08233	182	hypothetical protein; Provisional	96.88

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-43  Score=248.40  Aligned_cols=178  Identities=62%  Similarity=1.039  Sum_probs=168.0

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.+||+|+|+.|+|||.|+.|+....+.+.+..|.++++....+.++++.++++||||+|+++|+....+||+++|
T Consensus         4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah   83 (205)
T KOG0084|consen    4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   83 (205)
T ss_pred             cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEcCCCCCCHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQ  168 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~  168 (217)
                      ++|+|||+++.+||+.+..|+.++.++...++|.++|+||+|+.+ .+.++.++++.|+..++++ ++++||+++.++++
T Consensus        84 Gii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~-~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   84 GIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE-KRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             eEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh-heecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            999999999999999999999999999999999999999999976 7889999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCC
Q 027918          169 VFFSIARDIKQRLADTDSRS  188 (217)
Q Consensus       169 l~~~l~~~~~~~~~~~~~~~  188 (217)
                      .|..|...+..+........
T Consensus       163 ~F~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHHHhcccCCCCC
Confidence            99999998887766544444

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-42  Score=238.55  Aligned_cols=196  Identities=42%  Similarity=0.732  Sum_probs=173.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+++|+.++|||||+.|+..+.|.+...+|.+--+....+..++..+++.||||+|+++|+++.++||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45689999999999999999999999999999999999999999999998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||+++.+||..++.|+..+.+..++++-+.+|+||+||.+ .+.+..++++.++...+..++++||++|.|++++|..
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~-~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE-RREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh-cccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            999999999999999999999998887777888999999976 6889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCC--CCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918          173 IARDIKQRLADTDS--RSEPSTIKINQPDQAGGVGQAAQKSACCG  215 (217)
Q Consensus       173 l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      |.+.+.....+...  ..++.++.+.+.+      +....++|||
T Consensus       162 Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~------~~~~~~~~C~  200 (200)
T KOG0092|consen  162 IAEKLPCSDPQERQGLPNRRQGVDLNSNQ------EPARPSGCCA  200 (200)
T ss_pred             HHHhccCccccccccccccccceecccCC------CCcCcCCcCC
Confidence            99999877665543  2222333333332      5566788887

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-40  Score=230.70  Aligned_cols=197  Identities=36%  Similarity=0.606  Sum_probs=169.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|+.++||||||+++....+..+|..|.++++...++.+.+..+.+++|||+|+++|+.+.+.|++++.++|+|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviV  101 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIV  101 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEE
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~-~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||+++..+|++...|++.+....+. ++-+++|+||.||.+ .+++..++.+..+++++..|+++||+.|.|+.++|..|
T Consensus       102 yDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d-krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  102 YDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD-KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc-hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            9999999999999999999887765 466788999999987 58899999999999999999999999999999999998


Q ss_pred             HHHHHHHhcccCCCCC--CCccccCCCCCCCCCCCCcCCCCCCC
Q 027918          174 ARDIKQRLADTDSRSE--PSTIKINQPDQAGGVGQAAQKSACCG  215 (217)
Q Consensus       174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      ...+.+....+....+  ...+++....+.+..++   -++|||
T Consensus       181 aa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~---~~~~~C  221 (221)
T KOG0094|consen  181 AAALPGMEVLEILSKQESMVDINLKGSPNEQQASK---PGLCSC  221 (221)
T ss_pred             HHhccCccccccccccccceeEEccCCCCcccccC---CCCCCC
Confidence            8888776554433332  34444443322222222   566887

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-39  Score=231.76  Aligned_cols=175  Identities=77%  Similarity=1.235  Sum_probs=167.5

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      +..+++.+||+++|++++|||+++.++..+.+...+..|.++++...++..++..+.+++|||+|+++++.+...|++.|
T Consensus         6 ~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA   85 (207)
T KOG0078|consen    6 KEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA   85 (207)
T ss_pred             cCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhc
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +++++|||+++..+|+++..|+..+..+...++|+++|+||+|+.+ .+.+..+..+.+|.++|+.++++||++|.||++
T Consensus        86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~-~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE-KRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc-cccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            9999999999999999999999999999988999999999999976 789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 027918          169 VFFSIARDIKQRLADT  184 (217)
Q Consensus       169 l~~~l~~~~~~~~~~~  184 (217)
                      .|..|.+.+..+.+..
T Consensus       165 aF~~La~~i~~k~~~~  180 (207)
T KOG0078|consen  165 AFLSLARDILQKLEDA  180 (207)
T ss_pred             HHHHHHHHHHhhcchh
Confidence            9999999998765554

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=1.5e-37  Score=229.36  Aligned_cols=199  Identities=38%  Similarity=0.751  Sum_probs=168.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +.|+++|+.|+|||||++++..+.+...+.+|.+.++....+.+++..+.+.||||+|++.|+.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36999999999999999999999998888899888888888889988899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++++++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++... ++.++++||++|.|++++|++|+
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988877666799999999999965 5667788888888875 78999999999999999999999


Q ss_pred             HHHHHHh--cccCCCCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918          175 RDIKQRL--ADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG  215 (217)
Q Consensus       175 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      +.+....  +...+....+-++++++.+-+-.-+-..-+-=||
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (202)
T cd04120         160 DDILKKMPLDILRNELSNSILSLQPEPEIPPELPPPRPHVRCC  202 (202)
T ss_pred             HHHHHhCccccccccccchhhccCCCCCCCcCCCCCCCCcccC
Confidence            9887653  3334444455567777766665555555444444

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-38  Score=219.11  Aligned_cols=172  Identities=51%  Similarity=0.916  Sum_probs=163.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ..+.+|++++|+.|+|||.|+.+++...|.+.+..|.++++-...+.++++.++++||||+|++.+++....||+.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++++|..+..|+..++.+..+|+.+++++||+||.. .+.++.++.+.||++++..++++||+++.|+.|.|.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~-rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA-RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc-cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            9999999999999999999999999878899999999999976 679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 027918          172 SIARDIKQRLADT  184 (217)
Q Consensus       172 ~l~~~~~~~~~~~  184 (217)
                      .....++...+..
T Consensus       162 nta~~Iy~~~q~g  174 (216)
T KOG0098|consen  162 NTAKEIYRKIQDG  174 (216)
T ss_pred             HHHHHHHHHHHhc
Confidence            9998888776655

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-37  Score=220.94  Aligned_cols=176  Identities=48%  Similarity=0.848  Sum_probs=166.8

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .....++.+||+++|++++|||-|+.++..+.|.....+|.++++....+.++++.++.+||||+|+++|+.....||+.
T Consensus         7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg   86 (222)
T KOG0087|consen    7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG   86 (222)
T ss_pred             CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      +.++++|||++...+|+.+..|+.+++.+...++++++|+||+||.+ .+.+..++.+.++...+..++++||.++.+++
T Consensus        87 AvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~-lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe  165 (222)
T KOG0087|consen   87 AVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH-LRAVPTEDGKAFAEKEGLFFLETSALDATNVE  165 (222)
T ss_pred             cceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh-ccccchhhhHhHHHhcCceEEEecccccccHH
Confidence            99999999999999999999999999999988999999999999977 78899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccc
Q 027918          168 QVFFSIARDIKQRLADT  184 (217)
Q Consensus       168 ~l~~~l~~~~~~~~~~~  184 (217)
                      ++|..++..++......
T Consensus       166 ~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  166 KAFERVLTEIYKIVSKK  182 (222)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998887764443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=2.9e-37  Score=228.94  Aligned_cols=195  Identities=33%  Similarity=0.664  Sum_probs=161.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+|+|++|+|||||+++|.++.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999888888998888877777777 7779999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQV  169 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l  169 (217)
                      ||++++++++.+..|+..+....    ..+.|+++|+||+|+.. ......+++..+++..+ ..++++||++|.|++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~  159 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK-RLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA  159 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence            99999999999999998886542    24689999999999964 45667888999999988 69999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918          170 FFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  214 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (217)
                      |++|.+.+............+.+.....+.+   ...+++.++||
T Consensus       160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  201 (201)
T cd04107         160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQ---TTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHHHHhchhhHhhcCCCccccccccc---ceeccccCCCC
Confidence            9999999987766555555444433333333   22233334777

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.7e-36  Score=226.89  Aligned_cols=174  Identities=48%  Similarity=0.857  Sum_probs=156.2

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      .+.++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++.+..++..+++.++
T Consensus         7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~   86 (216)
T PLN03110          7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV   86 (216)
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence            34568899999999999999999999999888788888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+....+....++...+++++++||++|.|++++
T Consensus        87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l  165 (216)
T PLN03110         87 GALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQALAEKEGLSFLETSALEATNVEKA  165 (216)
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887766799999999999865 4556777888888888999999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 027918          170 FFSIARDIKQRLADT  184 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (217)
                      |++|.+.+.......
T Consensus       166 f~~l~~~i~~~~~~~  180 (216)
T PLN03110        166 FQTILLEIYHIISKK  180 (216)
T ss_pred             HHHHHHHHHHHhhcc
Confidence            999999987765443

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4.3e-37  Score=208.63  Aligned_cols=172  Identities=47%  Similarity=0.802  Sum_probs=159.5

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ......+||+++|.+|+|||+|+.++..+.+.+....+.+.++....+.++++++++.||||+|+++|+.+.+.||+.+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ++|+|||++.+++|..+..|++++..+.. +++-.++|+||+|... .+.++.++...|++++++-++++||++.+++..
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes-~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~  164 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES-ERVVDREEGLKFARKHRCLFIECSAKTRENVQC  164 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh-cccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence            99999999999999999999999988874 4566689999999643 688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 027918          169 VFFSIARDIKQRLA  182 (217)
Q Consensus       169 l~~~l~~~~~~~~~  182 (217)
                      .|+.|+..+++-..
T Consensus       165 ~FeelveKIi~tp~  178 (209)
T KOG0080|consen  165 CFEELVEKIIETPS  178 (209)
T ss_pred             HHHHHHHHHhcCcc
Confidence            99999999886543

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=3.5e-36  Score=222.71  Aligned_cols=197  Identities=53%  Similarity=0.877  Sum_probs=166.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.++.++..+++.++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            35679999999999999999999999988888888888888777888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++++++.+..|+..+..... ..|++||+||+|+.. ......++...++...+++++++||++|.|++++|+
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~piivVgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~  160 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCD-DVCKVLVGNKNDDPE-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN  160 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence            999999999999999999999877554 689999999999865 345567778888888889999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918          172 SIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  214 (217)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (217)
                      +|.+.+........    .....++....+..++..++++.||
T Consensus       161 ~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         161 CITELVLRAKKDNL----AKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHHHHHHhhhccC----cccccCCccccCccchhccccccCC
Confidence            99998876654432    2233445555566666667777777

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.4e-36  Score=220.98  Aligned_cols=168  Identities=48%  Similarity=0.815  Sum_probs=152.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|+.|+|||||+.++..+.+...+.++.+.++....+.+++..+.+.|||++|++.|+.++..+++++|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45779999999999999999999999888877777888888777788888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |+|||++++.+++.+..|+..+..... +.|++||+||.|+.+ .+.+..++++.+++..++++++|||++|.|++++|+
T Consensus        83 llVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVGNK~DL~~-~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~  160 (189)
T cd04121          83 ILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGNRLHLAF-KRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT  160 (189)
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECccchh-ccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            999999999999999999999977654 699999999999965 456788899999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027918          172 SIARDIKQRL  181 (217)
Q Consensus       172 ~l~~~~~~~~  181 (217)
                      +|.+.+....
T Consensus       161 ~l~~~i~~~~  170 (189)
T cd04121         161 ELARIVLMRH  170 (189)
T ss_pred             HHHHHHHHhc
Confidence            9998776433

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.5e-37  Score=213.75  Aligned_cols=171  Identities=41%  Similarity=0.716  Sum_probs=158.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      +...+||+++|++|+|||||++++.+.+|...+..|.+.++..+.+.+++..+.++||||+|+++|.++...+|+.+|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            35569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDES-KRAVPTSKGQALADEYG-IKFFETSAKTNLN  165 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (217)
                      +++||.+++.+|+.+..|.+++..+..    +..|+||++||+|+.+. .+.++...++.+|...+ ++||++|||+..|
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            999999999999999999999977653    46899999999999763 48899999999999887 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 027918          166 VEQVFFSIARDIKQRLA  182 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~~  182 (217)
                      +++.|+.+.+.......
T Consensus       166 V~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  166 VDEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999988876554

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=3.6e-36  Score=221.25  Aligned_cols=185  Identities=32%  Similarity=0.583  Sum_probs=152.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.||||+|+++|..++..+++.+|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999888877777766444 3455677877899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ++++++++.+..|+..+.....   .+.|+++|+||+|+.+ ...+...+...++...+++++++||++|.|++++|++|
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l  158 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY-EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL  158 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999988876542   4689999999999865 45566777788888889999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCCC
Q 027918          174 ARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG  215 (217)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  215 (217)
                      .+.+..+.....            ...+.+-.++.+|.+|||
T Consensus       159 ~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         159 VRALRQQRQGGQ------------GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhhcccC------------CCcCCCCCcccccccCce
Confidence            998876666531            123333444555666665

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.8e-37  Score=206.77  Aligned_cols=168  Identities=59%  Similarity=0.990  Sum_probs=159.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+..++.+|+|++|+|||+|+.++....|+.+|..|.+.++...++.++|.++++.|||++|++.|+.+...+++..+++
T Consensus         5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv   84 (198)
T KOG0079|consen    5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV   84 (198)
T ss_pred             HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||.++.+||.+.+.|+..++..+. .+|-++|+||.|.++ .+.+..++++.|+...++.+|++|+++..++...|.
T Consensus        85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~-RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPE-RRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCcc-ceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            999999999999999999999999887 589999999999876 778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027918          172 SIARDIKQRL  181 (217)
Q Consensus       172 ~l~~~~~~~~  181 (217)
                      .|.+.+....
T Consensus       163 cit~qvl~~k  172 (198)
T KOG0079|consen  163 CITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999988776

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.9e-35  Score=220.45  Aligned_cols=188  Identities=30%  Similarity=0.526  Sum_probs=149.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|.+|+|||||+++|..+.+.. +.++.+.++....+    ..+.+.||||+|++.|..++..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998865 45666655443332    3478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------------CCCccChHHHHHHHHHhC-----
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------------------SKRAVPTSKGQALADEYG-----  152 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~-----  152 (217)
                      |++++++++.+..|+..+......+.|+|+|+||+|+.+                  ..+.+..++++.++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988888766555789999999999865                  246678889999998876     


Q ss_pred             ---------CeEEEEcCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918          153 ---------IKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  214 (217)
Q Consensus       153 ---------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (217)
                               ++|+++||++|.|++++|..+++.+.....+..... +..     .-....-+++..|++||
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~  220 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEA-NRT-----QGTVNLPNPKRSKSKCC  220 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhh-hhh-----hccccCCCcccCCCCCC
Confidence                     689999999999999999999988876544332211 110     11222233667789998

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=2.7e-35  Score=216.73  Aligned_cols=190  Identities=49%  Similarity=0.900  Sum_probs=158.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+|+|++|+|||||++++.+..+. ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 35667777677666677888889999999999999999899999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.. .+....++...++..++++|+++||++|.|++++|.+|.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999887766799999999999864 345666778888888889999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCCCccccCCCCCCCCCCCCcCCCCCC
Q 027918          175 RDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC  214 (217)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c  214 (217)
                      +.+...........        +.+....+.+.+++++||
T Consensus       160 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  191 (191)
T cd04112         160 KELKHRKYEQPDEG--------KFKISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHHHhccccCCCC--------cEEeccccCcccccCCCC
Confidence            99876643322221        112444555667788888

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-35  Score=200.21  Aligned_cols=183  Identities=45%  Similarity=0.761  Sum_probs=170.7

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .+.+++.+|++|+|+.|+|||.|++++..+.+......+.++++....+.+.++.++++||||.|+++|++..+.||+.+
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      .+.++|||++++++|+.+..|+..++.....++-+++++||.||.+ .+++...++..|+.++.+.++++|+.+|+|+.|
T Consensus        83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~-~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             cceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh-hhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            9999999999999999999999999999888888899999999965 788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCCCc
Q 027918          169 VFFSIARDIKQRLADTDSRSEPST  192 (217)
Q Consensus       169 l~~~l~~~~~~~~~~~~~~~~~~~  192 (217)
                      .|-...+.+..+.+.....++--+
T Consensus       162 aFl~c~~tIl~kIE~GElDPer~g  185 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGELDPERMG  185 (214)
T ss_pred             HHHHHHHHHHHHHhhcCCCHHHcc
Confidence            999999999988887766665443

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.3e-34  Score=212.58  Aligned_cols=167  Identities=50%  Similarity=0.862  Sum_probs=149.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988778888888887778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |+++++++..+..|+..+......+.|+++|+||+|+.+ ...+..+....++...+++++++||++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVN-NKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc-cccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887666689999999999865 3456677778888888899999999999999999999999


Q ss_pred             HHHHHhcc
Q 027918          176 DIKQRLAD  183 (217)
Q Consensus       176 ~~~~~~~~  183 (217)
                      .+..+...
T Consensus       160 ~~~~~~~~  167 (188)
T cd04125         160 LIIKRLEE  167 (188)
T ss_pred             HHHHHhhc
Confidence            98766543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=7e-35  Score=210.01  Aligned_cols=164  Identities=48%  Similarity=0.856  Sum_probs=148.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999999999999998888888888788777788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|.++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA-QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999988777656789999999999965 455677888899998899999999999999999999999


Q ss_pred             HHHHH
Q 027918          175 RDIKQ  179 (217)
Q Consensus       175 ~~~~~  179 (217)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            87753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=2.3e-34  Score=215.79  Aligned_cols=166  Identities=22%  Similarity=0.478  Sum_probs=147.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+++|++|+|||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45689999999999999999999999999888888876654 45778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++++|+. +..|+..+..... +.|+++|+||+|+...           .+.+..++++.++..+++ .|++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999998 4789999987654 6899999999998542           256788899999999998 699999


Q ss_pred             CCCCC-CHHHHHHHHHHHHHHH
Q 027918          160 AKTNL-NVEQVFFSIARDIKQR  180 (217)
Q Consensus       160 a~~~~-~i~~l~~~l~~~~~~~  180 (217)
                      |++|. |++++|..++..+...
T Consensus       169 Aktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHHHh
Confidence            99997 8999999999887764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=3e-34  Score=213.96  Aligned_cols=170  Identities=44%  Similarity=0.802  Sum_probs=150.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888888888888887777766 4566899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++++++.+..|+..+..... ...|+++|+||.|+.. ...+..++...+++.++++++++||++|.|++++|++
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999876543 3578899999999865 4567778888999999999999999999999999999


Q ss_pred             HHHHHHHHhcccC
Q 027918          173 IARDIKQRLADTD  185 (217)
Q Consensus       173 l~~~~~~~~~~~~  185 (217)
                      |.+.+..+.....
T Consensus       161 l~~~~~~~~~~~~  173 (211)
T cd04111         161 LTQEIYERIKRGE  173 (211)
T ss_pred             HHHHHHHHhhcCC
Confidence            9999887766554

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.1e-34  Score=217.20  Aligned_cols=164  Identities=34%  Similarity=0.576  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.+++...+.+++ ..+.+.|||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999888899999888888887754 468999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ||++++++++.+..|+..+.....   .++|+++|+||+|+.+ .+.+..++...++..++++++++||++|.|++++|+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~  159 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-NRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ  159 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999987653   3568999999999964 456777888899999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          172 SIARDIKQR  180 (217)
Q Consensus       172 ~l~~~~~~~  180 (217)
                      +|...+...
T Consensus       160 ~l~~~l~~~  168 (215)
T cd04109         160 QLAAELLGV  168 (215)
T ss_pred             HHHHHHHhc
Confidence            999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.1e-34  Score=209.15  Aligned_cols=166  Identities=78%  Similarity=1.259  Sum_probs=150.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i   80 (167)
T cd01867           1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII   80 (167)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence            36799999999999999999999999999888898888887778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||+++++++..+..|+..+......+.|+++|+||+|+.+ ......++...++...+.+++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~  159 (167)
T cd01867          81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE-KRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT  159 (167)
T ss_pred             EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887666799999999999975 4455677788888888899999999999999999999


Q ss_pred             HHHHHHH
Q 027918          173 IARDIKQ  179 (217)
Q Consensus       173 l~~~~~~  179 (217)
                      |.+.+..
T Consensus       160 i~~~~~~  166 (167)
T cd01867         160 LAKDIKK  166 (167)
T ss_pred             HHHHHHh
Confidence            9988753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.1e-34  Score=210.87  Aligned_cols=168  Identities=34%  Similarity=0.636  Sum_probs=144.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+|+|++|+|||||+++|.++.+.. .+.++.+..+....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988874 5677777777677788888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ||++++.+++.+..|+..+..... +.|+++|+||+|+....   ..+..+++..++...+++++++||++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999998876543 68999999999985422   34455677788888889999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 027918          172 SIARDIKQRLADT  184 (217)
Q Consensus       172 ~l~~~~~~~~~~~  184 (217)
                      +|.+.+.....+.
T Consensus       160 ~i~~~~~~~~~~~  172 (193)
T cd04118         160 KVAEDFVSRANNQ  172 (193)
T ss_pred             HHHHHHHHhcccc
Confidence            9999887655443

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=7.8e-34  Score=211.71  Aligned_cols=171  Identities=51%  Similarity=0.890  Sum_probs=153.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45779999999999999999999999988888888888888777888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++++++.+..|+..+......+.|+++|+||+|+.+ .+....++.+.+++.++++++++||+++.|++++|.
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~  161 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI  161 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888776656799999999999865 455777888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027918          172 SIARDIKQRLAD  183 (217)
Q Consensus       172 ~l~~~~~~~~~~  183 (217)
                      ++++.+.....+
T Consensus       162 ~l~~~~~~~~~~  173 (210)
T PLN03108        162 KTAAKIYKKIQD  173 (210)
T ss_pred             HHHHHHHHHhhh
Confidence            999988876543

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.8e-34  Score=208.83  Aligned_cols=160  Identities=34%  Similarity=0.675  Sum_probs=143.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||+|+.++..+.+...+.+|.+..+ ...+..++..+++.||||+|+++|+.++..++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999999999999999888888887555 455677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC---------CccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918           96 DVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK---------RAVPTSKGQALADEYGI-KFFETSAKTNL  164 (217)
Q Consensus        96 d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (217)
                      |++++++|+.+ ..|+..+..... +.|+++|+||+|+.+..         +.+..++++.+++..+. .+++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 689999977654 69999999999995532         34778899999999987 69999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDI  177 (217)
Q Consensus       165 ~i~~l~~~l~~~~  177 (217)
                      |++++|+.+++.+
T Consensus       160 nV~~~F~~~~~~~  172 (176)
T cd04133         160 NVKAVFDAAIKVV  172 (176)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999999876

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=2.3e-34  Score=209.54  Aligned_cols=163  Identities=25%  Similarity=0.556  Sum_probs=145.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..++..+++++|++|
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999999888888887555 456778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+.           .+.++.++++.+++.+++ +|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 789999987664 6899999999998542           345888999999999995 999999


Q ss_pred             CCCCCC-HHHHHHHHHHHH
Q 027918          160 AKTNLN-VEQVFFSIARDI  177 (217)
Q Consensus       160 a~~~~~-i~~l~~~l~~~~  177 (217)
                      |++|.| ++++|..+++..
T Consensus       161 Ak~~~n~v~~~F~~~~~~~  179 (182)
T cd04172         161 ALQSENSVRDIFHVATLAC  179 (182)
T ss_pred             cCCCCCCHHHHHHHHHHHH
Confidence            999998 999999988854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=200.20  Aligned_cols=202  Identities=40%  Similarity=0.677  Sum_probs=168.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+-++++|+|++-+|||+|++.+..+.+.+-..||++.+++...+.+ .|..+++++|||+|++++++....||+++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            46689999999999999999999999999999999999998877766 57779999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCc-EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVN-KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~p-vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|||++++++|+.+..|+.+...+.. +..+ +.+|++|+||.. .+++..++++.++..++..|+++|+++|.|+++.
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S-qRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS-QRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh-hccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            999999999999999999999877664 3334 468899999974 8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCC--CCccccCCC-CCCCCCCCCcCCCCCCC
Q 027918          170 FFSIARDIKQRLADTDSRSE--PSTIKINQP-DQAGGVGQAAQKSACCG  215 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~c~  215 (217)
                      |+.|.+.+.....+.+.+-+  -.+++-..+ +...+-.-++..+.|||
T Consensus       165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i~~s~~~~~P~k~c~C  213 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQIPRSPSRKQPSKPCQC  213 (213)
T ss_pred             HHHHHHHHHHHHhcCceeeeeccccccccCCCcCCCcccccCCCCCCCC
Confidence            99999999988777443332  223333222 22233333444566776

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.8e-35  Score=194.83  Aligned_cols=175  Identities=53%  Similarity=0.957  Sum_probs=162.9

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ....++.+|++|+|...+|||+|+.++++..+.....+|.++++..+++--..+++++++|||.|++.|+.+...+++.+
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            33456778999999999999999999999999999999999999999887788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +++|++||+++.+++..+..|...+..+.-.+.|+|+|+||||+.+ ++.++.+....++.++|..||++||+.+.|+..
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~-eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~  173 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS-ERVISHERGRQLADQLGFEFFETSAKENINVKQ  173 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc-ceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence            9999999999999999999999999988888999999999999965 788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 027918          169 VFFSIARDIKQRLADT  184 (217)
Q Consensus       169 l~~~l~~~~~~~~~~~  184 (217)
                      +|+.++..+-....++
T Consensus       174 ~Fe~lv~~Ic~kmses  189 (193)
T KOG0093|consen  174 VFERLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999887766543

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=3.9e-34  Score=210.21  Aligned_cols=166  Identities=39%  Similarity=0.656  Sum_probs=143.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus         5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv   83 (189)
T PTZ00369          5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV   83 (189)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence            48999999999999999999999888777777766444 45667788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++++++.+..|+..+..... .+.|+++|+||+|+.+ ...+..++...++...+++++++||++|.|++++|.+|
T Consensus        84 ~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         84 YSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999998876543 4789999999999864 34556677778888888999999999999999999999


Q ss_pred             HHHHHHHhc
Q 027918          174 ARDIKQRLA  182 (217)
Q Consensus       174 ~~~~~~~~~  182 (217)
                      .+.+....+
T Consensus       163 ~~~l~~~~~  171 (189)
T PTZ00369        163 VREIRKYLK  171 (189)
T ss_pred             HHHHHHHhh
Confidence            988865433

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=4.9e-34  Score=209.90  Aligned_cols=163  Identities=31%  Similarity=0.614  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|+.|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.||||+|++.|+.++..+++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            48999999999999999999999999888888887544 34566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEcCC
Q 027918           95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETSAK  161 (217)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (217)
                      ||++++++++.+. .|+..+..... +.|+++|+||.||.+..           ..+..++.+.+++..+ ++++++||+
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            9999999999997 58887876543 69999999999996532           2356678889999888 699999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (217)
                      +|.|++++|.+|++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999987753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.5e-34  Score=206.77  Aligned_cols=165  Identities=33%  Similarity=0.575  Sum_probs=145.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.|||+||+..+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999998877777776444 45567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.++.++.+.+++..++++++|||++|.|++++|++|
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l  159 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES-QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL  159 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh-cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999988887653 34799999999999865 45677888889999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027918          174 ARDIKQRL  181 (217)
Q Consensus       174 ~~~~~~~~  181 (217)
                      ++.+.+..
T Consensus       160 ~~~~~~~~  167 (172)
T cd04141         160 VREIRRKE  167 (172)
T ss_pred             HHHHHHhc
Confidence            98887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=6.6e-34  Score=204.73  Aligned_cols=162  Identities=55%  Similarity=0.968  Sum_probs=144.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777777777777799999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++++++.+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++|.+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999877655789999999999965 3445567777888888899999999999999999999988


Q ss_pred             HHH
Q 027918          176 DIK  178 (217)
Q Consensus       176 ~~~  178 (217)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd01865         161 IIC  163 (165)
T ss_pred             HHH
Confidence            764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=5.3e-34  Score=204.38  Aligned_cols=160  Identities=54%  Similarity=0.977  Sum_probs=145.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++.++.+.+.+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888888887778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++++++.+..|+..+......+.|+++|+||.|+.. .+.+..++...+++..+.+|+++||++|.|++++|.+|.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999999877655799999999999865 4556778888999888899999999999999999999986


Q ss_pred             H
Q 027918          176 D  176 (217)
Q Consensus       176 ~  176 (217)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            4

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=8e-34  Score=204.46  Aligned_cols=163  Identities=69%  Similarity=1.129  Sum_probs=147.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999999999999988888888888888878888888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ||+++++++..+..|+..+......+.|+++|+||+|+.. ...+..+++..++...+++++++||++|.|++++|.+|.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999999877655789999999999865 345667788889988899999999999999999999998


Q ss_pred             HHHH
Q 027918          175 RDIK  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      +.+.
T Consensus       161 ~~~~  164 (166)
T cd01869         161 REIK  164 (166)
T ss_pred             HHHH
Confidence            8764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=8.2e-34  Score=208.26  Aligned_cols=166  Identities=31%  Similarity=0.606  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+.. .+... +..+.+.||||||++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999888777877666543 34444 6678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC---CccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHH
Q 027918           95 YDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK---RAVPTSKGQALADEYGI-KFFETSAKTNLNVEQV  169 (217)
Q Consensus        95 ~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l  169 (217)
                      ||++++++++.+.. |+..+.... .+.|+++|+||.|+....   +.+..++.+.++...++ +++++||++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            99999999999864 887776543 368999999999985422   34567788889999887 9999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027918          170 FFSIARDIKQRLAD  183 (217)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (217)
                      |..+.+.+......
T Consensus       159 f~~l~~~~~~~~~~  172 (187)
T cd04132         159 FDTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999988765554

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=7.9e-34  Score=207.11  Aligned_cols=167  Identities=51%  Similarity=0.919  Sum_probs=147.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------CeEEEEEEeeCCCcccccchhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------GKRIKLQIWDTAGQERFRTITT   82 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~   82 (217)
                      ++.+||+++|++|+|||||++++.++.+...+.++.+.++....+.+.          +..+.+.|||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            467999999999999999999999999988888888877776666553          4568999999999999999999


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (217)
                      .+++++|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++++++||+
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak  160 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED-QRQVSEEQAKALADKYGIPYFETSAA  160 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh-cCccCHHHHHHHHHHcCCeEEEEeCC
Confidence            99999999999999999999999999999987654 34689999999999865 35567788899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (217)
                      +|.|++++|++|.+.+.++
T Consensus       161 ~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         161 TGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999887654

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=6.3e-34  Score=206.79  Aligned_cols=162  Identities=25%  Similarity=0.539  Sum_probs=143.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.||||+|++.|..+.+.+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999999999999999888888887555 35677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEcCC
Q 027918           95 YDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAK  161 (217)
Q Consensus        95 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (217)
                      ||++++++++.+ ..|+..+....+ +.|+++|+||+||.+.           .+.+..++++.+++.+++ +|+++||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999996 789999987764 6899999999998542           245788899999999996 89999999


Q ss_pred             CCCC-HHHHHHHHHHHHH
Q 027918          162 TNLN-VEQVFFSIARDIK  178 (217)
Q Consensus       162 ~~~~-i~~l~~~l~~~~~  178 (217)
                      +|.+ ++++|..+++...
T Consensus       159 ~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         159 TSEKSVRDIFHVATMACL  176 (178)
T ss_pred             cCCcCHHHHHHHHHHHHh
Confidence            9995 9999999988543

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9e-35  Score=196.99  Aligned_cols=174  Identities=34%  Similarity=0.686  Sum_probs=161.2

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .......+||+++|..=+|||||+-++..+.|.....+|..-.+....+.+.+.+..+.||||.|+++|..+-+.||+.+
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34456789999999999999999999999999988888887788888889988999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +++++|||++|+++|+.++.|..+++...+..+-++||+||+||.+ ++.+..++++.+++..+..|+++||+++.|+.+
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe-eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE-ERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH-hhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            9999999999999999999999999998887788999999999965 788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 027918          169 VFFSIARDIKQRLAD  183 (217)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (217)
                      +|+.|...++++...
T Consensus       166 lFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  166 LFESLTAKMIEHSSQ  180 (218)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999988887543

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.2e-33  Score=211.68  Aligned_cols=164  Identities=30%  Similarity=0.573  Sum_probs=145.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|++|+|||||++++..+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            66799999999999999999999999998888899888888777777777799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++.++..+..|+..+..... +.|+++|+||+|+..  ..+..+.+ .+++..++.|+++||++|.|++++|.+
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            99999999999999999999987653 699999999999853  23334444 677777899999999999999999999


Q ss_pred             HHHHHHHH
Q 027918          173 IARDIKQR  180 (217)
Q Consensus       173 l~~~~~~~  180 (217)
                      |.+.+.+.
T Consensus       167 l~~~~~~~  174 (219)
T PLN03071        167 LARKLAGD  174 (219)
T ss_pred             HHHHHHcC
Confidence            99988654

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.9e-33  Score=202.89  Aligned_cols=166  Identities=51%  Similarity=0.911  Sum_probs=149.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ++.+||+|+|.+|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++++..++..+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            56799999999999999999999999888877888888888788888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||+++++++..+..|+..+......+.|+++|+||.|+.. ......++...++...++.++++||+++.|++++|.+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES-RREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887656799999999999864 3456777888888888999999999999999999999


Q ss_pred             HHHHHHH
Q 027918          173 IARDIKQ  179 (217)
Q Consensus       173 l~~~~~~  179 (217)
                      +.+.+.+
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9987753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-34  Score=194.07  Aligned_cols=180  Identities=46%  Similarity=0.830  Sum_probs=163.2

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      +.++..+||+++|..|+|||.|++++..+-+++..-.+.+.++-.+++.+++..++++||||.|+++|++....||+.+|
T Consensus         2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah   81 (213)
T KOG0095|consen    2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH   81 (213)
T ss_pred             cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|+|||++..++|+-+..|+.++..+....+-.|+|+||+|+.+ .++++.+..++|.......|+++||++-.+++.+
T Consensus        82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d-rrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD-RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh-hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999999999999876677799999999865 6788899999999998889999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCCC
Q 027918          170 FFSIARDIKQRLADTDSRSEP  190 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~~~~~~~  190 (217)
                      |..+.-.+.......+.-.+.
T Consensus       161 f~~~a~rli~~ar~~d~v~~~  181 (213)
T KOG0095|consen  161 FLDLACRLISEARQNDLVNNV  181 (213)
T ss_pred             HHHHHHHHHHHHHhccchhhc
Confidence            999887776655544443333

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.2e-33  Score=206.08  Aligned_cols=164  Identities=27%  Similarity=0.552  Sum_probs=143.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|+.|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999988888778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES----KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |++++++++.+..|+..+........| ++|+||+|+..+    ......++.+.++...+++++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876555566 678999998531    111224566778888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          172 SIARDIKQR  180 (217)
Q Consensus       172 ~l~~~~~~~  180 (217)
                      +|.+.+...
T Consensus       160 ~l~~~l~~~  168 (182)
T cd04128         160 IVLAKAFDL  168 (182)
T ss_pred             HHHHHHHhc
Confidence            999888653

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=3.6e-33  Score=208.36  Aligned_cols=165  Identities=25%  Similarity=0.519  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||+|+++|..+.+...+.+|.+..+. ..+.+++..+.+.||||+|++.|..+++.+++++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888888875554 56778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |++++++++.+. .|...+.... .+.|+++|+||+|+..+.           ..+..++.+.+++..+. +|++|||++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999985 5777665544 469999999999985421           23677889999999995 999999999


Q ss_pred             CCC-HHHHHHHHHHHHHHHhc
Q 027918          163 NLN-VEQVFFSIARDIKQRLA  182 (217)
Q Consensus       163 ~~~-i~~l~~~l~~~~~~~~~  182 (217)
                      +.+ ++++|+.++........
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         160 SERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhccC
Confidence            885 99999999987766444

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=2.8e-33  Score=201.42  Aligned_cols=163  Identities=52%  Similarity=0.898  Sum_probs=147.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999999999999998887888888888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||++++.++..+..|+..+......+.|+++|+||+|+.. .+....++.+.++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999887765799999999999865 35566778888888888999999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      .+.+
T Consensus       161 ~~~i  164 (165)
T cd01868         161 LTEI  164 (165)
T ss_pred             HHHh
Confidence            8765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.9e-33  Score=202.55  Aligned_cols=162  Identities=35%  Similarity=0.753  Sum_probs=146.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+++|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998888999988888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHAS-----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~-----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      |++++++++.+..|+..+.....     .+.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK-HRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999977653     4689999999999864 34566777778888888999999999999999999


Q ss_pred             HHHHHHHH
Q 027918          171 FSIARDIK  178 (217)
Q Consensus       171 ~~l~~~~~  178 (217)
                      ++|.+.+.
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=2.5e-33  Score=201.03  Aligned_cols=161  Identities=41%  Similarity=0.828  Sum_probs=151.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+|+|++++|||||+++|.+..+...+.++.+.+.....+..++..+.+.|||++|++.+..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999998889999999999999999999999999999989999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      ++++++++.+..|+..+......+.|++||+||.|+.+ .+.+..++++.+++.++.+|+++||+++.|+.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999998876799999999999865 56788899999999999999999999999999999999987


Q ss_pred             HH
Q 027918          177 IK  178 (217)
Q Consensus       177 ~~  178 (217)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=4.5e-33  Score=200.37  Aligned_cols=162  Identities=49%  Similarity=0.878  Sum_probs=144.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||++++..+.+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            56899999999999999999999988888778888878877888888887899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.. .+....+.+..+++..+. .++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE-QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999876666799999999999865 345666777888888775 7899999999999999999


Q ss_pred             HHHH
Q 027918          173 IARD  176 (217)
Q Consensus       173 l~~~  176 (217)
                      |.+.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            8864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=6.3e-33  Score=201.25  Aligned_cols=161  Identities=28%  Similarity=0.567  Sum_probs=139.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      ++||+|+|.+|+|||||++++.++.+...+.++.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            479999999999999999999999998888888775553 4566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEcCC
Q 027918           95 YDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAK  161 (217)
Q Consensus        95 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (217)
                      ||++++++++.+. .|+..+..... +.|+++|+||+|+...           .+.+..++++.+++..+ +.|+++||+
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            9999999999997 59888876543 6899999999998543           14566778888888887 699999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDI  177 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (217)
                      +|.|++++|+.++...
T Consensus       159 tg~~v~~~f~~~~~~~  174 (175)
T cd01874         159 TQKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999988753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=7.4e-33  Score=198.44  Aligned_cols=160  Identities=49%  Similarity=0.849  Sum_probs=145.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888788888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |+++++++..+..|+..+......+.|+++|+||.|+.. ......++...++...++.++++||+++.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999988777666899999999999865 4556778888888888999999999999999999999886


Q ss_pred             H
Q 027918          176 D  176 (217)
Q Consensus       176 ~  176 (217)
                      .
T Consensus       160 ~  160 (161)
T cd04113         160 S  160 (161)
T ss_pred             h
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.2e-32  Score=199.03  Aligned_cols=163  Identities=37%  Similarity=0.695  Sum_probs=142.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999998888998888877788888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      +++++++..+..|+..+.... ...+|+++|+||.|+..... ....+++..++..++.+++++||++|.|++++|+.|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999886543 44578999999999854322 2345667778888889999999999999999999999


Q ss_pred             HHHHH
Q 027918          175 RDIKQ  179 (217)
Q Consensus       175 ~~~~~  179 (217)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.1e-32  Score=198.42  Aligned_cols=160  Identities=33%  Similarity=0.677  Sum_probs=140.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888778888888887777777888899999999999999988899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |+++++++..+..|+..+..... +.|+++|+||+|+..  .... .....++....++++++||++|.|++++|++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~--~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  156 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD--RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR  156 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc--ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence            99999999999999999988765 699999999999863  2222 3345566677789999999999999999999998


Q ss_pred             HHHH
Q 027918          176 DIKQ  179 (217)
Q Consensus       176 ~~~~  179 (217)
                      .+..
T Consensus       157 ~~~~  160 (166)
T cd00877         157 KLLG  160 (166)
T ss_pred             HHHh
Confidence            8764

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=8.3e-33  Score=198.46  Aligned_cols=160  Identities=41%  Similarity=0.724  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||++++..+.+...+.++.+ +.+...+..++..+.+.||||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888777667665 444566777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+....++...+++.++.+++++||++|.|++++|++|.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED-ERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999999887654 34689999999999865 345566677778888889999999999999999999998


Q ss_pred             HHH
Q 027918          175 RDI  177 (217)
Q Consensus       175 ~~~  177 (217)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=5.5e-32  Score=202.10  Aligned_cols=171  Identities=51%  Similarity=0.817  Sum_probs=144.2

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ..+....+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            344556799999999999999999999988764 4567777777777777888778999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHH-HHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           89 MGILLVYDVTDESSFNNIRN-WIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      |++++|||+++++++..+.. |...+.... ..+.|+++|+||+|+.. ......++...++...+++|+++||++|.|+
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v  165 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES-ERDVSREEGMALAKEHGCLFLECSAKTRENV  165 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            99999999999999999976 666665433 23579999999999865 3445677777888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027918          167 EQVFFSIARDIKQRL  181 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (217)
                      +++|++|.+.+....
T Consensus       166 ~~l~~~l~~~~~~~~  180 (211)
T PLN03118        166 EQCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999887653

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.6e-35  Score=197.22  Aligned_cols=179  Identities=49%  Similarity=0.891  Sum_probs=162.1

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC---------CeEEEEEEeeCCCcccccc
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD---------GKRIKLQIWDTAGQERFRT   79 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~   79 (217)
                      .+.+++.||.+.+|++|+|||+++.++..+.+.....+++++++..+.+.++         +.++.+++|||+|++++++
T Consensus         3 ~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS   82 (219)
T KOG0081|consen    3 DGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS   82 (219)
T ss_pred             CccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence            3567899999999999999999999999999999999999999988887762         3468999999999999999


Q ss_pred             hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                      +...+++++-+++++||+++..+|-+++.|+..+..+. .+++.|++++||+||.+ .+.++.+.+..++.++++|||++
T Consensus        83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~-~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen   83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED-QRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh-hhhhhHHHHHHHHHHhCCCeeee
Confidence            99999999999999999999999999999999996654 45788999999999976 78899999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhcccCCCC
Q 027918          159 SAKTNLNVEQVFFSIARDIKQRLADTDSRS  188 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~  188 (217)
                      ||-+|.++.+..+.|.+.++++.++.-.+.
T Consensus       162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s  191 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMKRIEQCVEKS  191 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999877654433

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=1.9e-32  Score=196.71  Aligned_cols=163  Identities=58%  Similarity=1.015  Sum_probs=147.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999888888888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++.+++.+..|+..+..+...+.|+++|+||+|+.. ......+..+.+++..+++++++|+++|.|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887656799999999999854 3455667788888888999999999999999999999998


Q ss_pred             HHHH
Q 027918          176 DIKQ  179 (217)
Q Consensus       176 ~~~~  179 (217)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T smart00175      160 EILK  163 (164)
T ss_pred             HHhh
Confidence            8754

Rab GTPases are implicated in vesicle trafficking.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=2.3e-32  Score=197.65  Aligned_cols=162  Identities=43%  Similarity=0.741  Sum_probs=143.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..+||+++|++|+|||||++++.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999999888878888887777777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE  167 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  167 (217)
                      +|||++++++++.+..|+..+....    ..+.|+++|+||+|+.  .+....++++.+++..+ .+++++||++|.|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~  160 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA  160 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence            9999999999999999998886644    2468999999999985  35567788888988887 589999999999999


Q ss_pred             HHHHHHHHH
Q 027918          168 QVFFSIARD  176 (217)
Q Consensus       168 ~l~~~l~~~  176 (217)
                      ++|+++++.
T Consensus       161 ~~~~~~~~~  169 (170)
T cd04116         161 AAFEEAVRR  169 (170)
T ss_pred             HHHHHHHhh
Confidence            999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1.7e-32  Score=197.20  Aligned_cols=160  Identities=38%  Similarity=0.720  Sum_probs=138.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            7999999999999999999998887776667665443 456777887889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ ......++...+++..+++++++||++|.|++++|.+|.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999998887653 35799999999999965 344566667788888889999999999999999999998


Q ss_pred             HHH
Q 027918          175 RDI  177 (217)
Q Consensus       175 ~~~  177 (217)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-32  Score=183.52  Aligned_cols=204  Identities=40%  Similarity=0.731  Sum_probs=181.3

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .+.+.+|-+|+|+-|+|||.|+..+...++-..-..+.+.++....+.+.+..++++||||.|+++|+...+.+++.+.+
T Consensus         7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag   86 (215)
T KOG0097|consen    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG   86 (215)
T ss_pred             chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence            35678999999999999999999999999888888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      .+.|||++.+.++..+..|+...+.....+..+++++||.||.. .+.+..++++.|+.+++..++++||++|.++.+.|
T Consensus        87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~-qrdv~yeeak~faeengl~fle~saktg~nvedaf  165 (215)
T KOG0097|consen   87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES-QRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF  165 (215)
T ss_pred             eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh-cccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence            99999999999999999999999888877888999999999965 78899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCCCccccCCCCCCCC-----CCCCcCCCCCCC
Q 027918          171 FSIARDIKQRLADTDSRSEPSTIKINQPDQAGG-----VGQAAQKSACCG  215 (217)
Q Consensus       171 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~c~  215 (217)
                      -...+.+++..++.....+.-..-++..+.+++     +++..+|-+|-|
T Consensus       166 le~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~kd~c~c  215 (215)
T KOG0097|consen  166 LETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAKDQCSC  215 (215)
T ss_pred             HHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCccccCCC
Confidence            999999999988887777666555555555444     344555778865

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=2.5e-32  Score=195.68  Aligned_cols=160  Identities=31%  Similarity=0.558  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|.+|+|||||++++.+..+.+.+.++.+.+.....+..++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888877777776676667777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++.++.++..|+..+..... +.|+++|+||+|+...    ..++...++...+++++++||++|.|++++|+.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK  155 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999976543 5899999999998431    234455667777889999999999999999999998


Q ss_pred             HHHHH
Q 027918          176 DIKQR  180 (217)
Q Consensus       176 ~~~~~  180 (217)
                      .+.++
T Consensus       156 ~~~~~  160 (161)
T cd04124         156 LAVSY  160 (161)
T ss_pred             HHHhc
Confidence            77654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=2.2e-32  Score=198.22  Aligned_cols=159  Identities=33%  Similarity=0.632  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+.++..+.+...+.++.. ..+...+..++..+.+.||||+|++.+..++..+++.+|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999988877777765 344456677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |+++++++..+. .|+..+.... .+.|+++|+||+|+.+..           ..+..++++.++++++. +++++||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999996 5888887654 369999999999995421           34678888999999884 999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARD  176 (217)
Q Consensus       163 ~~~i~~l~~~l~~~  176 (217)
                      |.|++++|+.+.+.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999998764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.8e-32  Score=195.57  Aligned_cols=159  Identities=38%  Similarity=0.710  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC--CeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+...  +..+.+.+||+||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998888788888888766666666  667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||+++++++..+..|+..+..... +.|+++|+||+|+.. ...+..++...+++..+++++++||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~-~~p~iiv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD-QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhccc-ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999876554 699999999999865 34566678888999999999999999999999999998


Q ss_pred             HHH
Q 027918          174 ARD  176 (217)
Q Consensus       174 ~~~  176 (217)
                      ...
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.6e-32  Score=199.21  Aligned_cols=160  Identities=33%  Similarity=0.580  Sum_probs=137.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+..++..+.+.|||++|++.+..++..+++.+|++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            8999999999999999999999988877777765543 455667777999999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHhC-CeEEEEcCCCC
Q 027918           97 VTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTN  163 (217)
Q Consensus        97 ~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~Sa~~~  163 (217)
                      ++++++++.+. .|+..+..... +.|+++|+||+|+.+...           .+..++...++...+ ++|+++||++|
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            99999999986 59888876554 689999999999865321           245566777787776 68999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDIK  178 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (217)
                      .|++++|++|.+.+.
T Consensus       160 ~~v~e~f~~l~~~~~  174 (189)
T cd04134         160 RGVNEAFTEAARVAL  174 (189)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=4.2e-32  Score=194.90  Aligned_cols=161  Identities=36%  Similarity=0.657  Sum_probs=138.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|.+|+|||||++++..+.+...+.++.+ +.+...+..++..+.+.||||||++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999988877766654 45556777788788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||+++++++.++..|+..+..... .+.|+++|+||+|+.. ...+...+...++...+++++++||++|.|++++|.++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI  158 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988877542 5799999999999864 34455566778887788899999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      .+.+
T Consensus       159 ~~~l  162 (163)
T cd04176         159 VRQM  162 (163)
T ss_pred             HHhc
Confidence            8654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=5.2e-32  Score=193.99  Aligned_cols=160  Identities=43%  Similarity=0.747  Sum_probs=144.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999988888888888888888888888789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++++++.+..|+..+......+.|+++|+||+|+.. ......++...++...+++++++||+++.|+++++.+|.+
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999998776554699999999999854 4556677788888888899999999999999999999986


Q ss_pred             H
Q 027918          176 D  176 (217)
Q Consensus       176 ~  176 (217)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            4

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=8.1e-32  Score=192.94  Aligned_cols=159  Identities=38%  Similarity=0.676  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||++|++.++.++..+++.++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999888777777665433 455667777788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++.+++.+..|+..+.+.. ..+.|+++|+||+|+..  ......+...++...+++++++||++|.|++++|++|.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988887664 34689999999999864  44566777788888889999999999999999999998


Q ss_pred             HHH
Q 027918          175 RDI  177 (217)
Q Consensus       175 ~~~  177 (217)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=6.6e-32  Score=194.02  Aligned_cols=161  Identities=42%  Similarity=0.730  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||++++.+..+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999888776666655 333455667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++++++.+..|...+.+.. ..+.|+++|+||+|+.+ .+....+....++...+.+++++||++|.|++++|++|.
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence            9999999999999988886654 34689999999999865 345666778888888889999999999999999999998


Q ss_pred             HHHH
Q 027918          175 RDIK  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            7664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=9.2e-32  Score=198.23  Aligned_cols=156  Identities=29%  Similarity=0.628  Sum_probs=138.5

Q ss_pred             EcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh
Q 027918           21 IGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE  100 (217)
Q Consensus        21 ~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~  100 (217)
                      +|.+|+|||||+++++.+.+...+.++.+.++....+.+++..+.+.||||+|++.|..++..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888888888888888888888888889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          101 SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       101 ~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      .++..+..|+..+.+... ++|+++|+||+|+..  +.+..+. ..++...++.|++|||++|.|++++|.+|.+.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~~-~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999987654 699999999999854  2333333 367778889999999999999999999999988654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=9.3e-32  Score=193.54  Aligned_cols=158  Identities=35%  Similarity=0.546  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777665433 344556667789999999999999998888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |++++++++.+..|+..+.....   .+.|+++|+||+|+.. .+.+..++...++...++.++++||++|.|++++|++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH-KREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence            99999999999999888866532   4689999999999865 3456667777888888899999999999999999999


Q ss_pred             HHH
Q 027918          173 IAR  175 (217)
Q Consensus       173 l~~  175 (217)
                      |++
T Consensus       160 l~~  162 (165)
T cd04140         160 LLN  162 (165)
T ss_pred             HHh
Confidence            875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.7e-31  Score=191.68  Aligned_cols=162  Identities=48%  Similarity=0.837  Sum_probs=144.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.+..+.....++.+..+....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999999999999988877777777777777888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      +|+++++++..+..|+..+......+.|+++++||+|+.. ......++...++...++.++++||++|.|++++|++|.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999877656789999999999864 344566778888888889999999999999999999998


Q ss_pred             HHH
Q 027918          175 RDI  177 (217)
Q Consensus       175 ~~~  177 (217)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=1.5e-31  Score=193.35  Aligned_cols=162  Identities=48%  Similarity=0.884  Sum_probs=143.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-chhhhcccCCcEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILL   93 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~   93 (217)
                      .+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.++ .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4899999999999999999999988887788888888887888888888999999999999887 478889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC---CCCHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQV  169 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~l  169 (217)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ...+..++...++...+++++++||++   +.+++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~  160 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE-QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI  160 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh-hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence            999999999999999999887764 34699999999999865 455667788888888889999999999   8899999


Q ss_pred             HHHHHHHH
Q 027918          170 FFSIARDI  177 (217)
Q Consensus       170 ~~~l~~~~  177 (217)
                      |..|.+.+
T Consensus       161 f~~l~~~~  168 (170)
T cd04115         161 FMTLAHKL  168 (170)
T ss_pred             HHHHHHHh
Confidence            99988765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=2e-31  Score=191.50  Aligned_cols=161  Identities=40%  Similarity=0.633  Sum_probs=137.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988766666665533 344556778778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.. ......++...+++..+++++++||++|.|++++|++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999998887653 34689999999999865 34456667788888888999999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.3e-31  Score=196.36  Aligned_cols=165  Identities=24%  Similarity=0.374  Sum_probs=135.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~   87 (217)
                      +||+|+|.+|+|||||++++.++.+...+.++.+.+.+...+.+++..+.+.||||||...+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999998887888877666666677788888999999999764421        12345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCC
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTN  163 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~  163 (217)
                      +|++|+|||++++++++.+..|+..+....   ..++|+++|+||+|+.. .+....++.+.++. ..+++|+++||++|
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g  159 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN  159 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence            999999999999999999999998887764   35699999999999965 34455566666654 55789999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      .|++++|+.++..+....
T Consensus       160 ~~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         160 WHILLLFKELLISATTRG  177 (198)
T ss_pred             CCHHHHHHHHHHHhhccC
Confidence            999999999998776443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5.6e-31  Score=188.60  Aligned_cols=161  Identities=42%  Similarity=0.788  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.+.......+...+..+.+.+||+||+..+..++..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887766666666666666777777789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |++++++++.+..|+..+......+.|+++|+||+|+.. ......++...++...+.+++++|++++.|+++++++|.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER-QRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999887766799999999999864 3455667777788888899999999999999999999987


Q ss_pred             HH
Q 027918          176 DI  177 (217)
Q Consensus       176 ~~  177 (217)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            65

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=6.2e-31  Score=188.95  Aligned_cols=160  Identities=33%  Similarity=0.641  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +||+|+|++|+|||||+++|.+.  .+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5677788888877776666664 56699999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+ .........+.+....+.+++++||++|.|++++|+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLAD-KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999999887764 3589999999999854 3445555666777777889999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |.+.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            98764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=8e-31  Score=189.75  Aligned_cols=165  Identities=45%  Similarity=0.765  Sum_probs=143.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888777777777777777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~  170 (217)
                      |++++++++.+..|...+.....    .+.|+++|+||+|+.. ......+....+++..+ .+++++|+++|.|++++|
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  159 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF  159 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence            99999999999889887755442    3689999999999964 34456677777888777 799999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027918          171 FSIARDIKQRL  181 (217)
Q Consensus       171 ~~l~~~~~~~~  181 (217)
                      ++|.+.+.+..
T Consensus       160 ~~i~~~~~~~~  170 (172)
T cd01862         160 ETIARKALEQE  170 (172)
T ss_pred             HHHHHHHHhcc
Confidence            99999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=7.8e-31  Score=187.89  Aligned_cols=159  Identities=51%  Similarity=0.912  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887777788877777777777877789999999999999988899999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++.+++.+..|+..+..+. ..+.|+++|+||+|+..  .....++...++...+++++++|+++|.|++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN--REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc--cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999999887765 35789999999999863  44566778888888899999999999999999999987


Q ss_pred             HH
Q 027918          175 RD  176 (217)
Q Consensus       175 ~~  176 (217)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            65

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=7.2e-31  Score=193.08  Aligned_cols=159  Identities=29%  Similarity=0.496  Sum_probs=129.2

Q ss_pred             eeEEEEEcCCCCcHHHHHH-HHHcCC-----CCCCcccceee-eEEEEE--------EEECCeEEEEEEeeCCCcccccc
Q 027918           15 LIKLLLIGDSGVGKSCLLL-RFSDGS-----FTTSFITTIGI-DFKIRT--------IELDGKRIKLQIWDTAGQERFRT   79 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~Dt~G~~~~~~   79 (217)
                      .+||+++|++|+|||+|+. ++.++.     +...+.+|.+. +.+...        ..+++..+.+.||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            3799999999999999996 665543     34556676642 322222        24678889999999999875  3


Q ss_pred             hhhhcccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC------------------CCccC
Q 027918           80 ITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES------------------KRAVP  140 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~------------------~~~~~  140 (217)
                      +...+++++|++|+|||++++.+++.+. .|+..+..... +.|+++|+||+||.+.                  .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4556889999999999999999999997 59998877654 6899999999998642                  36678


Q ss_pred             hHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          141 TSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      .++++.+++.++++|++|||++|.|++++|+.+++.
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            899999999999999999999999999999998763

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=6.2e-31  Score=190.78  Aligned_cols=159  Identities=33%  Similarity=0.634  Sum_probs=136.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (217)
                      |+|+|++|+|||||++++.++.+...+.++.... +...+..++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999999887777776544 345667788888999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918           98 TDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKTNL  164 (217)
Q Consensus        98 ~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (217)
                      +++++++.+. .|+..+..... +.|+++|+||+|+....           ..+..++...+++..+. .++++||++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCP-NTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999986 49988877654 69999999999986421           23566778889999886 99999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIK  178 (217)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (217)
                      |++++|+.|.+.+.
T Consensus       159 ~v~~lf~~l~~~~~  172 (174)
T smart00174      159 GVREVFEEAIRAAL  172 (174)
T ss_pred             CHHHHHHHHHHHhc
Confidence            99999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.98  E-value=1.4e-30  Score=197.84  Aligned_cols=178  Identities=26%  Similarity=0.400  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++++++.+...+.++.+ +++...+.+++..+.+.||||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877777765 555667778888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCC
Q 027918           96 DVTDESSFNNIRNWIRNIEQH---------ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN  165 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~---------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  165 (217)
                      |++++++|+.+..|+..+...         ...+.|+++|+||+|+.. .+.+..+++..++.. .++.++++||++|.|
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~-~~~v~~~ei~~~~~~~~~~~~~evSAktg~g  158 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF-PREVQRDEVEQLVGGDENCAYFEVSAKKNSN  158 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh-ccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence            999999999999998888654         123689999999999865 345666777766653 357899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCCccccCC
Q 027918          166 VEQVFFSIARDIKQRLADTDSRSEPSTIKINQ  197 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  197 (217)
                      ++++|++|........  ......+.+++++.
T Consensus       159 I~elf~~L~~~~~~p~--e~~~~~~~~~~~~~  188 (247)
T cd04143         159 LDEMFRALFSLAKLPN--EMSPSLHRKISVQY  188 (247)
T ss_pred             HHHHHHHHHHHhcccc--ccCccccceeeeee
Confidence            9999999998653322  33344444444443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=3.2e-30  Score=186.11  Aligned_cols=164  Identities=49%  Similarity=0.871  Sum_probs=143.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||+..+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988877777777777777777888888889999999999999998889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+ .+.+..+..+.+.+....+++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            999999999999999999988877666799999999999865 3445566677777777789999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |.+.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            98764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=9.7e-31  Score=186.62  Aligned_cols=154  Identities=25%  Similarity=0.434  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+.++..+.+...+.++ ... +...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~-~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGR-FKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccc-eEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988877655443 223 346678888888999999999864     34667899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |++++++|+.+..|+..+..... .+.|+++|+||.|+.. ..+.+..++.+.+++.. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999977653 4689999999999853 34667778888888776 489999999999999999999


Q ss_pred             HHHH
Q 027918          173 IARD  176 (217)
Q Consensus       173 l~~~  176 (217)
                      +.+.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.7e-30  Score=188.32  Aligned_cols=158  Identities=34%  Similarity=0.603  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++.++.+...+.++. .+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999988887777765 3455566778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+...           .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999885 6888887543 36899999999998542           345677788899998887 999999999


Q ss_pred             CCCHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIAR  175 (217)
Q Consensus       163 ~~~i~~l~~~l~~  175 (217)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999988653

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=1.6e-30  Score=188.64  Aligned_cols=160  Identities=30%  Similarity=0.579  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||++++.++.+...+.++.. +.....+.+++..+.+.+||++|+..+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988776666654 334446677887788999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |++++++++.+. .|+..+... ..+.|+++|+||+|+.+..           ..+..++++.+++..+. +++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999886 588888765 4579999999999985432           24566778888888885 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|++++|+.++..+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=9.9e-31  Score=188.79  Aligned_cols=163  Identities=22%  Similarity=0.305  Sum_probs=138.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+.+||+++|.+|+|||||++++.++.+. ..+.+|.+..+....+..++..+.+.+||++|.+.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999988 77888888777767777888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF  170 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (217)
                      ++|||++++++++.+..|+..+...  .+.|+++|+||+|+.+. ........+.+++.++. .++++||++|.|++++|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEccccccc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence            9999999999999998888766332  26899999999998542 22333445677777776 57999999999999999


Q ss_pred             HHHHHHHH
Q 027918          171 FSIARDIK  178 (217)
Q Consensus       171 ~~l~~~~~  178 (217)
                      +.|.+.+.
T Consensus       159 ~~l~~~~~  166 (169)
T cd01892         159 TKLATAAQ  166 (169)
T ss_pred             HHHHHHhh
Confidence            99998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04177 RSR1 RSR1 subgroup

Probab=99.98  E-value=3.2e-30  Score=186.04  Aligned_cols=161  Identities=39%  Similarity=0.684  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            789999999999999999999988877777766533 4566677888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |++++++++.+..|...+.+.. ..+.|+++++||.|+.. .+....++...+++..+ ++++++||++|.|++++|.++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999988887643 34799999999999865 34556667777777777 799999999999999999999


Q ss_pred             HHHHH
Q 027918          174 ARDIK  178 (217)
Q Consensus       174 ~~~~~  178 (217)
                      ...+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            87654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00154 Rab Rab family

Probab=99.98  E-value=2.7e-30  Score=184.03  Aligned_cols=158  Identities=57%  Similarity=0.998  Sum_probs=142.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888887789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++++++.+..|+..+......+.|+++|+||+|+.. ......++.+.++...+.+++++|++++.|+++++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            999999999999999999887755799999999999853 345567888888888889999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.6e-30  Score=187.07  Aligned_cols=160  Identities=37%  Similarity=0.577  Sum_probs=133.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhcccCCcEEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~~i~v~   95 (217)
                      ||+|+|++|+|||||+++++.+.+...+.++.... +...+.+++..+.+.+||+||+.. ....+..+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999887766666655333 345567788888999999999885 3455677889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFS  172 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~  172 (217)
                      |++++++++.+..|+..+....  ..+.|+++|+||+|+.. .+.+..++...+++..+.+|+++||++|. |++++|..
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~  158 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH-YRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE  158 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-hCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence            9999999999999998887754  34699999999999854 35566778888898889999999999995 99999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |.+.+.
T Consensus       159 l~~~~~  164 (165)
T cd04146         159 LCREVR  164 (165)
T ss_pred             HHHHHh
Confidence            988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=7.3e-30  Score=191.54  Aligned_cols=163  Identities=30%  Similarity=0.458  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc-CCcEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-GAMGILL   93 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~d~~i~   93 (217)
                      +||+++|++|+|||||+++|..+.+. ..+.++.+.+++...+.+++..+.+.+||++|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999999887775 5555655546667777888888999999999997  223344566 8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++++|++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~  157 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG  157 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999999887754 24689999999999865 3556677777888888899999999999999999999


Q ss_pred             HHHHHHHHh
Q 027918          173 IARDIKQRL  181 (217)
Q Consensus       173 l~~~~~~~~  181 (217)
                      |.+.+....
T Consensus       158 l~~~~~~~~  166 (221)
T cd04148         158 IVRQIRLRR  166 (221)
T ss_pred             HHHHHHhhh
Confidence            998886443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=1.8e-29  Score=185.11  Aligned_cols=165  Identities=34%  Similarity=0.589  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      .||+|+|++|+|||||++++..+.+...+.++....+ ...+.+++..+.+.+||++|++.+......+++.+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998777766666554333 345667777789999999999988877777889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC---------CCccChHHHHHHHHHhCC-eEEEEcCCCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES---------KRAVPTSKGQALADEYGI-KFFETSAKTNL  164 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~  164 (217)
                      |+++.++++.+. .|+..+..... +.|+++|+||+|+...         .+.+..++...+++..+. .++++||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999987 59998876654 5999999999998532         233445678888888885 89999999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 027918          165 NVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~  182 (217)
                      |++++|+++.+.+...++
T Consensus       160 ~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         160 GVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CHHHHHHHHHHHHhcccC
Confidence            999999999987755443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=1.6e-29  Score=186.97  Aligned_cols=161  Identities=32%  Similarity=0.503  Sum_probs=132.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|.+|+|||||++++++..+...+.++.. +.....+.+++..+.+.|||+||+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888766656553 3445566777777899999999999999888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+......+..+....... ..+.+++++||++|.|++++|++|.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654 4699999999999865334444444444333 4457899999999999999999999


Q ss_pred             HHHH
Q 027918          175 RDIK  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=8.9e-32  Score=177.52  Aligned_cols=163  Identities=50%  Similarity=0.931  Sum_probs=150.8

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918           19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (217)
Q Consensus        19 ~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (217)
                      +++|++++|||.|+-++..+.+- .+..+++++++....+.++++.+++++|||.|++++++....||+++|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999999887765 67789999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918           98 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus        98 ~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      .+..||++...|+.++..+..+.+.+.+++||+|+.+ ++.+..++.+.+++.+++|++++||++|-+++..|-.|.+.+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~-er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l  159 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH-ERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL  159 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch-hhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence            9999999999999999999888888999999999966 577888999999999999999999999999999999998887


Q ss_pred             HHHhc
Q 027918          178 KQRLA  182 (217)
Q Consensus       178 ~~~~~  182 (217)
                      ....-
T Consensus       160 ~k~~~  164 (192)
T KOG0083|consen  160 KKLKM  164 (192)
T ss_pred             HHhcc
Confidence            66543

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=3.9e-29  Score=179.41  Aligned_cols=161  Identities=39%  Similarity=0.649  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||++++....+...+.++... .+......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKAD-SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchh-hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            48999999999999999999998877666666543 34455677877889999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |++++.++..+..|+..+.... ..+.|+++|+||+|+.. ...........++..++.+++++||++|.|++++|++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887764 24799999999999865 234566667778888889999999999999999999998


Q ss_pred             HHHH
Q 027918          175 RDIK  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T cd04139         159 REIR  162 (164)
T ss_pred             HHHH
Confidence            8764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd00876 Ras Ras family

Probab=99.97  E-value=2.3e-29  Score=179.88  Aligned_cols=158  Identities=41%  Similarity=0.711  Sum_probs=137.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+|+|++|+|||||++++.+..+...+.++.. +.....+..++..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887766666655 5555666777767899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      +++++++..+..|+..+..... .+.|+++|+||+|+.. ......+.+..++...+.+++++|++++.|++++|++|.+
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence            9999999999999888877654 5799999999999865 3556677888888888899999999999999999999987


Q ss_pred             H
Q 027918          176 D  176 (217)
Q Consensus       176 ~  176 (217)
                      .
T Consensus       159 ~  159 (160)
T cd00876         159 E  159 (160)
T ss_pred             h
Confidence            5

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=4.6e-29  Score=181.09  Aligned_cols=160  Identities=34%  Similarity=0.656  Sum_probs=133.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      .||+|+|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777766444 345677888889999999999999988888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |++++++++.+. .|+..+..... +.|+++|+||+|+....           ..+.....+.++...+. ++++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999998886 48887766543 68999999999985421           22445667777777764 899999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|++++|++|.+..
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=8.5e-30  Score=186.24  Aligned_cols=168  Identities=21%  Similarity=0.348  Sum_probs=131.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      .+||+++|++|+|||||++++....+... .++.+.......+.. ++..+.+.+|||||++.+..+|..+++.+|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999998877644 555555555544443 3345899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------hCCeEEEEcCCCCCCH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------YGIKFFETSAKTNLNV  166 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i  166 (217)
                      |+|++++++++.+..|+..+.... ..+.|+++|+||+|+..   ....++...+...      ..++++++||++|.|+
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            999999999988888887776543 24689999999999853   2233444444321      1246889999999999


Q ss_pred             HHHHHHHHHHHHHHhcccCC
Q 027918          167 EQVFFSIARDIKQRLADTDS  186 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~~~~~~  186 (217)
                      ++++++|.+.+.+..+...+
T Consensus       159 ~~l~~~l~~~l~~~~~~~~~  178 (183)
T cd04152         159 QEGLEKLYEMILKRRKMLRQ  178 (183)
T ss_pred             HHHHHHHHHHHHHHHhhhhh
Confidence            99999999999876665443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=1.9e-29  Score=181.93  Aligned_cols=154  Identities=21%  Similarity=0.388  Sum_probs=121.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+++|++|+|||||+++|..+.+.. +.++.+.++.  .+....  +.+.+||+||++.++.++..+++++|++|+
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998776643 4566665543  333333  899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~  167 (217)
                      |||++++.+++.+..|+..+... ...+.|+++|+||+|+.+   ....++++.+...     ..+.++++||++|.|++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999998888877666543 224689999999999854   2345555555421     22578999999999999


Q ss_pred             HHHHHHHH
Q 027918          168 QVFFSIAR  175 (217)
Q Consensus       168 ~l~~~l~~  175 (217)
                      ++|++|.+
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.2e-29  Score=180.37  Aligned_cols=156  Identities=19%  Similarity=0.372  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|.+|+|||||+++|.+..+.. +.+|.+..+.  .+..++  +.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~~~--~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEYKN--LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEECC--EEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886654 5666554443  344444  799999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC------CeEEEEcCCCCCCHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQV  169 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l  169 (217)
                      +++++++..+..|+..+.+.. ..+.|+++|+||+|+..   ....+++..++...+      +.++++||++|.|++++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            999999999999888886542 23589999999999853   345565655554222      36889999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          170 FFSIARDIKQR  180 (217)
Q Consensus       170 ~~~l~~~~~~~  180 (217)
                      |++|.+.+.+.
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876553

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=4.6e-29  Score=181.87  Aligned_cols=159  Identities=19%  Similarity=0.364  Sum_probs=122.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..+||+++|++++|||||++++..+.+. .+.+|.+..+.  .+..++  +.+.+||+||++.++.+|..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            44589999999999999999999877665 35666665443  344544  89999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i  166 (217)
                      +|||+++++++..+..++..+... ...+.|++||+||+|+.+.   ...++........     .+.++++||++|+|+
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv  166 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL  166 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence            999999999998888776666432 2236899999999998653   2333333322111     124668999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+..
T Consensus       167 ~e~~~~l~~~~~~  179 (181)
T PLN00223        167 YEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999888754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.6e-29  Score=183.47  Aligned_cols=156  Identities=19%  Similarity=0.377  Sum_probs=121.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+++|++|+|||||++++..+.+. .+.+|.+.++.  .+....  +.+.+||+||+..+..++..+++++|++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKN--ISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            3589999999999999999999876664 35666665543  334444  799999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  167 (217)
                      |||++++++++....|+..+.... ..+.|++||+||+|+.+..   ..+++.....     ...+.++++||++|.|++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            999999999999888877775432 2468999999999986421   2222222211     122457789999999999


Q ss_pred             HHHHHHHHHH
Q 027918          168 QVFFSIARDI  177 (217)
Q Consensus       168 ~l~~~l~~~~  177 (217)
                      ++|++|.+.+
T Consensus       164 e~~~~l~~~~  173 (175)
T smart00177      164 EGLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHHh
Confidence            9999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=5.3e-29  Score=181.73  Aligned_cols=159  Identities=21%  Similarity=0.403  Sum_probs=121.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+++|++|+|||||++++..+.+.. +.+|.+.++.  .+...+  +.+.+||+||++.++.++..+++.+|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEYKN--LKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999998776654 4566654443  344444  799999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~  167 (217)
                      |+|+++++++.....++..+... ...+.|++||+||.|+.+.   ...+++....     ....+.++++||++|.|++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            99999999999888776666432 2235899999999998542   1222221111     1112457789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          168 QVFFSIARDIKQR  180 (217)
Q Consensus       168 ~l~~~l~~~~~~~  180 (217)
                      ++|++|.+.+...
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.97  E-value=4e-28  Score=176.97  Aligned_cols=164  Identities=36%  Similarity=0.595  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      .||+|+|.+|+|||||++++.+..+...+.++....+ ...+..++..+.+.+||+||+.++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999887666666554333 455666776788999999999999989999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |.++..+++.+..|+..+.+.. ..+.|+++|+||+|+.. .+....++...++...+++++++||+++.|+.++|.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT-QRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999888886653 34689999999999864 344555667777888889999999999999999999999


Q ss_pred             HHHHHHh
Q 027918          175 RDIKQRL  181 (217)
Q Consensus       175 ~~~~~~~  181 (217)
                      +.+....
T Consensus       160 ~~~~~~~  166 (180)
T cd04137         160 EEIEKVE  166 (180)
T ss_pred             HHHHHhc
Confidence            8876443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=3.1e-28  Score=175.99  Aligned_cols=158  Identities=36%  Similarity=0.686  Sum_probs=130.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|++|+|||||+++|.+..+...+.++.. +........++..+.+.+||+||+..+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988665566554 334455667777889999999999988888888889999999999


Q ss_pred             eCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCCC----------ccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918           96 DVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESKR----------AVPTSKGQALADEYGI-KFFETSAKTN  163 (217)
Q Consensus        96 d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (217)
                      |+++++++..... |+..+..... +.|+++|+||+|+.....          .+..++...++...+. +++++||++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            9999998877654 7777766554 699999999999865432          2346677778888876 9999999999


Q ss_pred             CCHHHHHHHHHH
Q 027918          164 LNVEQVFFSIAR  175 (217)
Q Consensus       164 ~~i~~l~~~l~~  175 (217)
                      .|++++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=9.5e-29  Score=179.20  Aligned_cols=157  Identities=20%  Similarity=0.365  Sum_probs=123.5

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ..+..++|+++|++|+|||||+++|.+..+. .+.++.+  +....+.+++  +.+.+||+||++.++.++..+++.+|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGEDID-TISPTLG--FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccc--cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3345689999999999999999999987543 3445544  3334455554  789999999999999899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNL  164 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~  164 (217)
                      +++|||++++.++.....|+..+... ...+.|+++|+||+|+.+.   ...+++..+..     ...++++++||++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~  161 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA---LSEEEIREALELDKISSHHWRIQPCSAVTGE  161 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence            99999999999999888888777542 2247899999999998642   23444444442     235789999999999


Q ss_pred             CHHHHHHHHHH
Q 027918          165 NVEQVFFSIAR  175 (217)
Q Consensus       165 ~i~~l~~~l~~  175 (217)
                      |++++|++|.+
T Consensus       162 gi~~l~~~l~~  172 (173)
T cd04154         162 GLLQGIDWLVD  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.1e-28  Score=176.46  Aligned_cols=152  Identities=20%  Similarity=0.422  Sum_probs=117.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+++|.+|+|||||++++..+.+. .+.++.+....  .+....  +.+.+||+||++.+...+..+++++|+++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999877765 35666665443  344443  89999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHH-HHHHH----HHhCCeEEEEcCCCCCCHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSK-GQALA----DEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      |++++.+++.+..|+..+... ...+.|+++++||+|+.+.   ...++ ...+.    ....+.++++||++|.|++++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~  152 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG  152 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence            999999999988877766432 2235899999999998542   12222 22221    122356789999999999999


Q ss_pred             HHHHHH
Q 027918          170 FFSIAR  175 (217)
Q Consensus       170 ~~~l~~  175 (217)
                      |++|.+
T Consensus       153 ~~~l~~  158 (159)
T cd04150         153 LDWLSN  158 (159)
T ss_pred             HHHHhc
Confidence            999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=1.8e-29  Score=181.33  Aligned_cols=152  Identities=21%  Similarity=0.337  Sum_probs=123.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDV   97 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   97 (217)
                      |+++|++|+|||||+++|.+..+...+.++.+...  ..+..  ..+.+.+||++|+..++.++..+++.+|++++|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPT--QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEee--CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999999877777777776443  33333  348999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh----HHHHHHHHHhCCeEEEEcCCC------CCCHH
Q 027918           98 TDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT----SKGQALADEYGIKFFETSAKT------NLNVE  167 (217)
Q Consensus        98 ~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~i~  167 (217)
                      +++.++.....|+..+.... .+.|+++|+||+|+.... ....    ..+..++.+.++.++++||++      ++|++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          78 ADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAAR-SVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCC-CHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            99999999988888876543 479999999999986532 2111    123455666678899999888      99999


Q ss_pred             HHHHHHHH
Q 027918          168 QVFFSIAR  175 (217)
Q Consensus       168 ~l~~~l~~  175 (217)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=8.7e-28  Score=179.97  Aligned_cols=166  Identities=33%  Similarity=0.619  Sum_probs=143.1

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      +....+||+++|++|+|||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            34556899999999999999999988888888888998888888777778888999999999999998888999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +++|||+++..++..+..|+..+.... .+.|+++++||+|+.+  ..... ....++...++.++++|+++|.|+++.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~--~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKD--RQVKA-RQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCcc--ccCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999999987665 4689999999999853  22222 3345677778999999999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          171 FSIARDIKQR  180 (217)
Q Consensus       171 ~~l~~~~~~~  180 (217)
                      .+|.+.+...
T Consensus       161 ~~ia~~l~~~  170 (215)
T PTZ00132        161 LWLARRLTND  170 (215)
T ss_pred             HHHHHHHhhc
Confidence            9999988754

>cd01893 Miro1 Miro1 subfamily

Probab=99.96  E-value=5.2e-28  Score=174.17  Aligned_cols=160  Identities=29%  Similarity=0.436  Sum_probs=123.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|.+|+|||||+++|.++.+...+.++. . .......+++..+.+.+|||||...+...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-P-EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-c-ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988865533322 1 22333445566689999999999888887888889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHH
Q 027918           96 DVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADEYG--IKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        96 d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |++++++++.+. .|+..+..... +.|+++|+||+|+.+..... ..+....++....  ..++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 58887876554 68999999999996533211 1233333333332  3899999999999999999


Q ss_pred             HHHHHHH
Q 027918          172 SIARDIK  178 (217)
Q Consensus       172 ~l~~~~~  178 (217)
                      .+...+.
T Consensus       158 ~~~~~~~  164 (166)
T cd01893         158 YAQKAVL  164 (166)
T ss_pred             HHHHHhc
Confidence            9887654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.6e-28  Score=175.94  Aligned_cols=152  Identities=18%  Similarity=0.363  Sum_probs=116.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +|+++|++|+|||||+++|.+... ...+.++.+...  ..+...+  +.+.+||+||+..+..++..+++.+|++|+|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGN--LSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECC--EEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 445566655433  2233333  78999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  167 (217)
                      |++++.++.....|+..+....   ..+.|+++|+||+|+....   ..++......     ...+.++++||++|.|++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~  153 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL---TAVKITQLLGLENIKDKPWHIFASNALTGEGLD  153 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC---CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence            9999999888888887775532   2479999999999986422   2222222211     112468999999999999


Q ss_pred             HHHHHHHH
Q 027918          168 QVFFSIAR  175 (217)
Q Consensus       168 ~l~~~l~~  175 (217)
                      ++|++|.+
T Consensus       154 ~~~~~l~~  161 (162)
T cd04157         154 EGVQWLQA  161 (162)
T ss_pred             HHHHHHhc
Confidence            99999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=5.3e-28  Score=176.95  Aligned_cols=164  Identities=40%  Similarity=0.668  Sum_probs=150.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+++|.+|+|||+|..++..+.+...+.++.+ +.+...+.+++..+.+.|+||+|++.+..+...+++.+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999999999987 6667788888989999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      ||+++++.||+.+..++..+.+.. ....|+++|+||+|+.. .+.+..++.+.++..++++|+++||+.+.+++++|..
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~-~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~  159 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER-ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE  159 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh-ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence            999999999999999999995433 35689999999999976 4889999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027918          173 IARDIKQ  179 (217)
Q Consensus       173 l~~~~~~  179 (217)
                      |.+.+..
T Consensus       160 L~r~~~~  166 (196)
T KOG0395|consen  160 LVREIRL  166 (196)
T ss_pred             HHHHHHh
Confidence            9998866

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=1.3e-27  Score=176.12  Aligned_cols=147  Identities=21%  Similarity=0.407  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-----CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      +||+++|++++|||||++++.++.+...+.+|.+.++....+.++     +..+.+.|||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877776666663     456899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-------------------CCCCcEEEEEeCCCCCCCCCccCh----HHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-------------------SDNVNKVLVGNKADMDESKRAVPT----SKGQAL  147 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~pvivv~nK~Dl~~~~~~~~~----~~~~~~  147 (217)
                      +|+|||++++.+++.+..|+..+....                   ..++|+++|+||.|+.+. +....    .....+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~-r~~~~~~~~~~~~~i  159 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE-KESSGNLVLTARGFV  159 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh-cccchHHHhhHhhhH
Confidence            999999999999999999999996632                   246899999999998653 32332    235567


Q ss_pred             HHHhCCeEEEEcCCCC
Q 027918          148 ADEYGIKFFETSAKTN  163 (217)
Q Consensus       148 ~~~~~~~~~~~Sa~~~  163 (217)
                      +.+.+.+.++.++.++
T Consensus       160 a~~~~~~~i~~~c~~~  175 (202)
T cd04102         160 AEQGNAEEINLNCTNG  175 (202)
T ss_pred             HHhcCCceEEEecCCc
Confidence            8889999999888765

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=1.3e-27  Score=163.07  Aligned_cols=169  Identities=21%  Similarity=0.354  Sum_probs=133.0

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .+...+..++|+++|..||||||++++|.+.. .....|+.+  +...++.+++  +.+++||.+|+...++.|+.||..
T Consensus         9 k~k~kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nYfes   83 (185)
T KOG0073|consen    9 KQKLKEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNYFES   83 (185)
T ss_pred             HHHhhhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecc--eEEEEEEcCCcchhHHHHHHhhhc
Confidence            34456778999999999999999999999877 333455555  5556666766  899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccCh---HHHHHHHHHhCCeEEEEcCCCC
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPT---SKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      +|++|+|+|.+++..++.....+..+.. ..-.+.|++|++||.|++.+-.....   -..+++++...++++.||+.+|
T Consensus        84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tg  163 (185)
T KOG0073|consen   84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTG  163 (185)
T ss_pred             cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccc
Confidence            9999999999999887776665555432 22236899999999998642221111   2244555667799999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      +++.+-++||++.++++.
T Consensus       164 e~l~~gidWL~~~l~~r~  181 (185)
T KOG0073|consen  164 EDLLEGIDWLCDDLMSRL  181 (185)
T ss_pred             ccHHHHHHHHHHHHHHHh
Confidence            999999999999998743

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.96  E-value=2.8e-28  Score=174.75  Aligned_cols=167  Identities=35%  Similarity=0.623  Sum_probs=149.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ..+|++|||+..+|||+|+..+..+.|...+.||+. +.+...+.++ ++.+.+.+|||.|+++|+.+++..|+++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            458999999999999999999999999999999997 6677778885 99999999999999999999988999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhC-CeEEEEc
Q 027918           93 LVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYG-IKFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~S  159 (217)
                      ++|++.++++++++.. |+.++..+++ +.|+|+||+|.||.++.           ..+..++.+.++++.| ..|++||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999999776 9999999885 69999999999997432           3567788999999999 5899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhc
Q 027918          160 AKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      |++..|++++|+..+.......+
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999998887765443

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=7.2e-28  Score=173.55  Aligned_cols=154  Identities=21%  Similarity=0.334  Sum_probs=119.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      +|+++|++|||||||++++.+. +...+.++.+..  ...+..++  +.+.+||+||+..++.++..+++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 555666666644  33455554  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHhC--CeEEEEcCCCC------C
Q 027918           97 VTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSK---GQALADEYG--IKFFETSAKTN------L  164 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~~Sa~~~------~  164 (217)
                      ++++.+++.+..|+..+..... .+.|+++|+||+|+.+.........   ...++.+.+  +.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999888865432 4689999999999865321111111   122332233  57788999998      8


Q ss_pred             CHHHHHHHHHH
Q 027918          165 NVEQVFFSIAR  175 (217)
Q Consensus       165 ~i~~l~~~l~~  175 (217)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PTZ00099 rab6; Provisional

Probab=99.96  E-value=9.2e-27  Score=168.60  Aligned_cols=144  Identities=40%  Similarity=0.677  Sum_probs=127.0

Q ss_pred             CCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc
Q 027918           38 GSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA  117 (217)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~  117 (217)
                      +.|.+.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++++.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            35667788899988888888888888999999999999999999999999999999999999999999999999987765


Q ss_pred             CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       118 ~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      ..+.|+++|+||+|+.. .+.+..+++..++..+++.++++||++|.|++++|++|.+.+.+...
T Consensus        83 ~~~~piilVgNK~DL~~-~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGD-LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             CCCCeEEEEEECccccc-ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence            55789999999999964 34567778888888888999999999999999999999998876443

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.2e-27  Score=171.24  Aligned_cols=152  Identities=26%  Similarity=0.471  Sum_probs=116.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      +|+++|++|+|||||+++|.+..+... .++.+..+  ..+... ..+.+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999877543 45544333  333333 33789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH------HHHhCCeEEEEcCCCCCCHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL------ADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++++.++.....|+..+.+.. ..+.|+++|+||+|+...   ...+++...      +...+++++++||++|.|++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~  153 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA  153 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence            999998888888877775432 246899999999998542   122222221      2223457999999999999999


Q ss_pred             HHHHHH
Q 027918          170 FFSIAR  175 (217)
Q Consensus       170 ~~~l~~  175 (217)
                      |++|.+
T Consensus       154 ~~~i~~  159 (160)
T cd04156         154 FRKLAS  159 (160)
T ss_pred             HHHHhc
Confidence            999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=6.8e-27  Score=169.59  Aligned_cols=153  Identities=22%  Similarity=0.347  Sum_probs=118.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+++|++|+|||||++++..+.+.. +.++.+..+  ..+..++  +.+.+||+||++.+...+..+++.+|++++|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999999877664 355555443  3444554  7999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHH-HHHH----HHhCCeEEEEcCCCCCCHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKG-QALA----DEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +|+++++++.....++..+.... ..+.|+++++||+|+.+.   ...++. +.+.    ...+++++++||++|.|+++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            99999988888777666664432 246899999999998542   222322 2221    22346799999999999999


Q ss_pred             HHHHHHH
Q 027918          169 VFFSIAR  175 (217)
Q Consensus       169 l~~~l~~  175 (217)
                      +|++|.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.9e-26  Score=167.15  Aligned_cols=157  Identities=29%  Similarity=0.511  Sum_probs=125.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+++|+.|||||||++++..+.... ..||.+  +....+.+++  +.+.+||.+|+..++..|+.++.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g--~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG--FNIEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS--EEEEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc--cccceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            667999999999999999999999765443 555555  4455566676  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEcCCCCCC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLN  165 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~  165 (217)
                      ||+|+++.+.+......+..+.... -.+.|++|++||+|+.+.   ...+++.....      ...+.++.|||.+|+|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            9999999988888877766665432 246999999999998653   34444444332      2346789999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDI  177 (217)
Q Consensus       166 i~~l~~~l~~~~  177 (217)
                      +.+.++||.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=2.2e-27  Score=169.52  Aligned_cols=151  Identities=24%  Similarity=0.405  Sum_probs=112.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|++++|||||++++..+.+.. ..++.+.+.  ..+...+  +.+.+||+||+..++..+..+++.++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNV--ETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998776653 344544333  3344444  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHH----HHhCCeEEEEcCCCCCCHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALA----DEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~----~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++++.++.....++..+.+ ....+.|+++|+||+|+....   ...+.. .+.    ...+.+++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  152 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence            9998887766665544432 222368999999999985421   122221 111    1122479999999999999999


Q ss_pred             HHHHH
Q 027918          171 FSIAR  175 (217)
Q Consensus       171 ~~l~~  175 (217)
                      ++|.+
T Consensus       153 ~~l~~  157 (158)
T cd04151         153 DWLVN  157 (158)
T ss_pred             HHHhc
Confidence            99864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=8.1e-27  Score=171.55  Aligned_cols=155  Identities=21%  Similarity=0.335  Sum_probs=122.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+++|++|||||||++++.+..+. .+.++.+.  ....+.+++  +.+.+||+||+..+...|..+++.++++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~--~~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP--TSEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999987764 34444443  334455665  689999999999988889999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----------------hCCeEE
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE----------------YGIKFF  156 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~  156 (217)
                      |+|+++.+++.....|+..+.... ..+.|+++|+||+|+..   ....++.+.+...                ..+.++
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            999999988888888877776533 24689999999999853   3455556555532                224689


Q ss_pred             EEcCCCCCCHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      +|||++|.|++++|++|.+.
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EeEecCCCChHHHHHHHHhh
Confidence            99999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=8.3e-27  Score=167.95  Aligned_cols=152  Identities=21%  Similarity=0.389  Sum_probs=117.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      +|+|+|++|+|||||+++|.+...      ...+.++.+..+  ..+.+++  ..+.+||+||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432      122344444333  3445554  799999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCCeEEEEcCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGIKFFETSAKT  162 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~  162 (217)
                      +++|+|+++++++.....|+..+.+.. ..+.|+++|+||+|+...   ...++...+...       .+++++++||++
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  153 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE  153 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence            999999999988888888877775532 246899999999998542   233344444332       236899999999


Q ss_pred             CCCHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIAR  175 (217)
Q Consensus       163 ~~~i~~l~~~l~~  175 (217)
                      |.|+++++++|.+
T Consensus       154 g~gv~e~~~~l~~  166 (167)
T cd04160         154 GTGVREGIEWLVE  166 (167)
T ss_pred             CcCHHHHHHHHhc
Confidence            9999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.3e-25  Score=173.35  Aligned_cols=144  Identities=24%  Similarity=0.488  Sum_probs=122.2

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-------------CeEEEEEEeeCCCccc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-------------GKRIKLQIWDTAGQER   76 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~Dt~G~~~   76 (217)
                      .+....+||+|+|+.|+|||||+++|.++.+...+.+|.+.++....+.++             +..+.+.||||+|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            344556899999999999999999999999888888898888776666654             2458899999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCCCC--Cc---c
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS------------DNVNKVLVGNKADMDESK--RA---V  139 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~------------~~~pvivv~nK~Dl~~~~--~~---~  139 (217)
                      |+.++..++++++++|+|||++++.+++.+..|+..+.....            .++|++||+||+||....  +.   +
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            999999999999999999999999999999999999987631            258999999999996432  12   3


Q ss_pred             ChHHHHHHHHHhCC
Q 027918          140 PTSKGQALADEYGI  153 (217)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (217)
                      ..++++.++.++++
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            57889999998873

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.4e-26  Score=165.33  Aligned_cols=151  Identities=22%  Similarity=0.410  Sum_probs=118.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|.+|+|||||++++.+.... .+.++.+..  ...+.++.  +.+.+||+||+..+...+..+++.+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVV-TTIPTIGFN--VETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCC-CCCCCcCcc--eEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            6899999999999999999988743 334444433  34445554  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +++++++.....|+..+.... ..+.|+++|+||+|+....   ..++......     ...++++++||++|.|++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  152 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL  152 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence            999999998888877775533 3478999999999986422   2223333322     234689999999999999999


Q ss_pred             HHHHH
Q 027918          171 FSIAR  175 (217)
Q Consensus       171 ~~l~~  175 (217)
                      ++|..
T Consensus       153 ~~l~~  157 (158)
T cd00878         153 DWLLQ  157 (158)
T ss_pred             HHHhh
Confidence            99864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=3.1e-28  Score=168.60  Aligned_cols=173  Identities=35%  Similarity=0.633  Sum_probs=160.0

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ....+..+|++|+|..++||||+|++++.+.|...+..+.+.++....+.+++..+.+.+||++|++++......||+.+
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            44567889999999999999999999999999999999999999888888887778999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      .+.++||+.+|+.+|+....|++.+..... .+|.++|-||+|+.+ .......+.+.+++.....++.+|+++..|+-.
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlve-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~  171 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVE-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMH  171 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhH-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHH
Confidence            999999999999999999999999988776 599999999999977 567788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 027918          169 VFFSIARDIKQRLAD  183 (217)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (217)
                      +|.+|+..+.++..+
T Consensus       172 vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  172 VFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998877665

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=5.3e-26  Score=166.29  Aligned_cols=155  Identities=18%  Similarity=0.262  Sum_probs=119.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+++|.+|+|||||++++.+..+.. +.++.+.  ....+..++  +.+.+||+||+..++..+..++..+|++++
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP--TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            34899999999999999999999876643 2333332  223344555  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEcC
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA  160 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  160 (217)
                      |+|+++++++.....++..+.... ..+.|+++|+||+|+..   ....+++......            ..+.++++||
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            999999998888888777665432 24689999999999853   2344444433211            2246999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARD  176 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (217)
                      ++|.|++++++||...
T Consensus       168 ~~~~g~~~~~~wl~~~  183 (184)
T smart00178      168 VRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccCCChHHHHHHHHhh
Confidence            9999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=5.6e-26  Score=163.77  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=110.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---------hhhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---------ITTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------~~~~~~~   86 (217)
                      ++|+++|.+|+|||||+++|.+..+.....+..+.+.....+..++  +.+.||||||......         .......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            4799999999999999999999876543333333344444444443  7999999999742110         0111112


Q ss_pred             CCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           87 GAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      .+|++++|+|+++..+  ++....|+..+.... .+.|+++|+||+|+... ...  .....+.....++++++||++|.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~-~~~--~~~~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF-EDL--SEIEEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch-hhH--HHHHHhhhhccCceEEEEecccC
Confidence            3689999999998754  356667888776554 26899999999998542 111  12445555556899999999999


Q ss_pred             CHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDI  177 (217)
Q Consensus       165 ~i~~l~~~l~~~~  177 (217)
                      |+++++++|.+.+
T Consensus       155 gi~~l~~~l~~~~  167 (168)
T cd01897         155 GVDEVKNKACELL  167 (168)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.94  E-value=1.5e-25  Score=176.50  Aligned_cols=164  Identities=15%  Similarity=0.140  Sum_probs=123.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------ccchhhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~   88 (217)
                      ..|.|+|.||||||||+++|.+........+.++.......+.+.+. ..+.+||+||..+       ....+...+..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~-~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY-KSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC-cEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            47999999999999999999986544444455556666666666321 4799999999643       112233355679


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      +++++|+|+++.++++.+..|..++..+..  .+.|+++|+||+|+.+. .....+..+.++...+++++++||+++.|+
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            999999999988889999999999977643  36899999999998642 222333344455556689999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 027918          167 EQVFFSIARDIKQRL  181 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~  181 (217)
                      ++++++|.+.+....
T Consensus       317 ~eL~~~L~~~l~~~~  331 (335)
T PRK12299        317 DELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999998876543

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=6.1e-26  Score=161.62  Aligned_cols=152  Identities=22%  Similarity=0.463  Sum_probs=119.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      .|+++|++|+|||||+++|.+..+...+.++.+....  .+..++  +.+.+||+||+..+...+..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3899999999999999999999888877787765554  344444  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHHHHH
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +++..++.....|+..+.... ..+.|+++|+||+|+.+..   .........     ....++++++|+++|.|+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL---SVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL  153 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc---CHHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence            999988888777766664422 2468999999999985421   112211111     1223688999999999999999


Q ss_pred             HHHHH
Q 027918          171 FSIAR  175 (217)
Q Consensus       171 ~~l~~  175 (217)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04159         154 DWLIK  158 (159)
T ss_pred             HHHhh
Confidence            99865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=1.9e-25  Score=162.63  Aligned_cols=154  Identities=27%  Similarity=0.383  Sum_probs=111.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC-------CCCCcccc------eeeeEEEE--EEEE---CCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITT------IGIDFKIR--TIEL---DGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~-------~~~~~~~~------~~~~~~~~--~~~~---~~~~~~~~l~Dt~G~~~~~   78 (217)
                      +|+++|.+++|||||+++|++..       +...+.++      .+......  .+.+   ++..+.+.||||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999998742       11111111      12222222  2222   5556899999999999999


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---eE
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---KF  155 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~  155 (217)
                      ..+..+++.+|++|+|+|+++..+......|.....    .+.|+++|+||+|+.+..   .......++...+.   .+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~  154 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVINKIDLPSAD---PERVKQQIEDVLGLDPSEA  154 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEEECCCCCcCC---HHHHHHHHHHHhCCCcccE
Confidence            999999999999999999998766666665543322    368999999999985421   12233455555554   48


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      +++||++|.|++++|++|.+.+
T Consensus       155 ~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         155 ILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEeeccCCCCHHHHHHHHHhhC
Confidence            9999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01898 Obg Obg subfamily

Probab=99.94  E-value=1.9e-25  Score=161.27  Aligned_cols=157  Identities=17%  Similarity=0.188  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhhc---ccCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAY---YRGAM   89 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~---~~~~d   89 (217)
                      +|+++|.+|+|||||+++|.+........+..+.+.....+..++. ..+.+|||||...    .+.+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999976543222222223333333344442 4899999999642    22223333   34699


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCC
Q 027918           90 GILLVYDVTDE-SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLN  165 (217)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  165 (217)
                      ++++|+|++++ .+++.+..|.+.+.....  .+.|+++|+||+|+....  ...+....+... ...+++++||+++.|
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            99999999998 788999999988876542  368999999999985422  223444455555 367899999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          166 VEQVFFSIARD  176 (217)
Q Consensus       166 i~~l~~~l~~~  176 (217)
                      ++++|++|.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.94  E-value=1.2e-24  Score=154.69  Aligned_cols=158  Identities=34%  Similarity=0.497  Sum_probs=126.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|.+|+|||||++++....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..+++.++.++++
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999887777777887777776677777667899999999999999888889999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           95 YDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~-~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|+... .++.... .|...+......+.|+++++||+|+....  ........+......+++++||.+|.|+.+++++
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence            998776 5555554 56666666554478999999999985422  3333333444444568999999999999999988


Q ss_pred             HH
Q 027918          173 IA  174 (217)
Q Consensus       173 l~  174 (217)
                      |.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            64

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.93  E-value=2.9e-25  Score=165.02  Aligned_cols=157  Identities=19%  Similarity=0.161  Sum_probs=115.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------cchhh
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT   82 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~   82 (217)
                      .+..++|+|+|++|+|||||++++.+..+.....+..+.+.....+.+.+. ..+.+|||||....         ...+ 
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-  115 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-  115 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence            355689999999999999999999998654333333344444445555443 37999999997321         1111 


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ..+..+|++++|+|++++.+......|...+......+.|+++|+||+|+.....      ...+......+++++||++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~------~~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE------LEERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH------HHHHhhcCCCceEEEEcCC
Confidence            2356899999999999988888887787777665555689999999999854211      1133444557899999999


Q ss_pred             CCCHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARD  176 (217)
Q Consensus       163 ~~~i~~l~~~l~~~  176 (217)
                      +.|+++++++|.+.
T Consensus       190 ~~gi~~l~~~L~~~  203 (204)
T cd01878         190 GEGLDELLEAIEEL  203 (204)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-25  Score=154.54  Aligned_cols=160  Identities=19%  Similarity=0.385  Sum_probs=127.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .....+|+++|..+|||||++.+|.-+.+-.+ .||.+...  -.+.+.+  +.+++||.+|+.+++.+|++|+++.+++
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn--~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN--ISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc--eEEEEEecCCCcccccchhhhccCCcEE
Confidence            34568999999999999999999988776655 77776444  4555555  8999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCC
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~  165 (217)
                      |||+|.+|++.+...+..+..+..... .+.|+++++||.|++++-.   ..++...     .....+.+..|+|.+|+|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            999999999998888886666655443 5789999999999876422   2222222     122347788999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQ  179 (217)
Q Consensus       166 i~~l~~~l~~~~~~  179 (217)
                      +.|.++||.+.+..
T Consensus       166 L~egl~wl~~~~~~  179 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987753

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.2e-24  Score=155.96  Aligned_cols=153  Identities=19%  Similarity=0.188  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +.|+|+|.+|+|||||+++|.+..   +.....++.+.+.....+.+.+ ...+.+|||||++.+......+++.+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999999643   2223334444445444555542 258999999999988776777888999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHH---hCCeEEEEcCCCCCC
Q 027918           93 LVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADE---YGIKFFETSAKTNLN  165 (217)
Q Consensus        93 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~  165 (217)
                      +|+|+++   .++.+.+    ..+... . ..|+++|+||+|+..... ....++...+...   .+.+++++||++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~----~~~~~~-~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHL----EILELL-G-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHH----HHHHHh-C-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999987   3333222    222222 1 248999999999864211 1112333344433   357999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          166 VEQVFFSIAR  175 (217)
Q Consensus       166 i~~l~~~l~~  175 (217)
                      ++++++.|.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=3.6e-24  Score=155.10  Aligned_cols=150  Identities=21%  Similarity=0.407  Sum_probs=114.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+|+|++|+|||||++++.+..+.. ..++.+.  ....+..++  ..+.+||+||+..+...+..+++.+|++++|
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~--~~~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDISH-ITPTQGF--NIKTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCc--ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            6899999999999999999999876543 3444443  333445555  6899999999998888888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--------CeEEEEcCCCCCC
Q 027918           95 YDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--------IKFFETSAKTNLN  165 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~  165 (217)
                      +|+.+..++.....|+..+... ...+.|+++++||+|+...   ...++   +....+        ++++++||++|.|
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~g  162 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA---APAEE---IAEALNLHDLRDRTWHIQACSAKTGEG  162 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC---CCHHH---HHHHcCCcccCCCeEEEEEeECCCCCC
Confidence            9999988888777776665432 2346899999999998542   11222   222222        3578999999999


Q ss_pred             HHHHHHHHHH
Q 027918          166 VEQVFFSIAR  175 (217)
Q Consensus       166 i~~l~~~l~~  175 (217)
                      ++++|+||.+
T Consensus       163 i~~~~~~l~~  172 (173)
T cd04155         163 LQEGMNWVCK  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.2e-23  Score=157.92  Aligned_cols=168  Identities=39%  Similarity=0.576  Sum_probs=135.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.+..+...+.++.+..+........+..+++.+|||+|+++++.++..++..+++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999988888877777666666655568999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-----------ccChHHHHHHHHHh---CCeEEEEc
Q 027918           95 YDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-----------AVPTSKGQALADEY---GIKFFETS  159 (217)
Q Consensus        95 ~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~~S  159 (217)
                      +|..+ ..+.+....|...+......+.|+++|+||+|+.....           ..............   ...++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999 44566666799898887765689999999999976431           22222222222222   33489999


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHhc
Q 027918          160 AK--TNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       160 a~--~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      ++  ++.++.++|..+...+.....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhh
Confidence            99  999999999999888865443

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=2.5e-24  Score=155.08  Aligned_cols=157  Identities=18%  Similarity=0.134  Sum_probs=110.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      .|+|+|.+|+|||||+++|....+.....++.+.+.....+..+ +....+.+|||||+..+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            59999999999999999999887766544444444444444443 12368999999999999888888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH------HhCCeEEEEcCCCCCCHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD------EYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      |+++........ .+..+..   .+.|+++|+||+|+..............+..      ...++++++|+++|.|++++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998753222221 2222332   3689999999999854211111111221111      11368999999999999999


Q ss_pred             HHHHHHHH
Q 027918          170 FFSIARDI  177 (217)
Q Consensus       170 ~~~l~~~~  177 (217)
                      +++|.+..
T Consensus       158 ~~~l~~~~  165 (168)
T cd01887         158 LEAILLLA  165 (168)
T ss_pred             HHHHHHhh
Confidence            99998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.92  E-value=1.3e-24  Score=160.26  Aligned_cols=162  Identities=18%  Similarity=0.213  Sum_probs=109.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT   81 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   81 (217)
                      -+|+++|.+++|||||+++|++  ..+...+            ..+.+.+.......+....+.+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  4443322            1122333333333333334789999999999999999


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCCe
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGIK  154 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~  154 (217)
                      ..+++.+|++++|+|+++.. ......|+..+..   .+.|+++|+||+|+.........+++..+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2223334443333   3689999999999864322222334444432       23578


Q ss_pred             EEEEcCCCCCCHHHH------HHHHHHHHHHHh
Q 027918          155 FFETSAKTNLNVEQV------FFSIARDIKQRL  181 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l------~~~l~~~~~~~~  181 (217)
                      ++++||++|.|++++      +++|++.+..+.
T Consensus       159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~  191 (194)
T cd01891         159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHV  191 (194)
T ss_pred             EEEeehhccccccccccchhhHHHHHHHHHhcC
Confidence            999999999888655      455666655443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.92  E-value=4.7e-24  Score=169.39  Aligned_cols=155  Identities=23%  Similarity=0.224  Sum_probs=114.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~   83 (217)
                      +..++|+++|.+|+|||||+|+|.+..+.....++.+.++....+.+.+. ..+.||||+|..         .+...+ .
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e  264 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-E  264 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-H
Confidence            44589999999999999999999998755444455556666677777332 589999999972         222222 2


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      .+.++|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+...      ...... .....+++++||++|
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~------~~v~~~-~~~~~~~i~iSAktg  337 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE------PRIERL-EEGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh------HhHHHH-HhCCCCEEEEEccCC
Confidence            4788999999999999988877777776666655446899999999998542      111111 112246899999999


Q ss_pred             CCHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARD  176 (217)
Q Consensus       164 ~~i~~l~~~l~~~  176 (217)
                      .|+++++++|.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=1.9e-24  Score=151.62  Aligned_cols=134  Identities=21%  Similarity=0.263  Sum_probs=98.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc-----cccchhhhcccCCcEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-----RFRTITTAYYRGAMGI   91 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----~~~~~~~~~~~~~d~~   91 (217)
                      ||+++|++|+|||||+++|.+..+.  +.++.+       +.+..     .+|||||..     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999999987652  222222       12221     689999973     3333333 47899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVF  170 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~  170 (217)
                      ++|||++++.++.. ..|...+      ..|+++|+||+|+.+  .....+..+.+++..+. +++++||++|.|++++|
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  137 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV  137 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence            99999999988654 2343321      249999999999854  23345666777777775 89999999999999999


Q ss_pred             HHHH
Q 027918          171 FSIA  174 (217)
Q Consensus       171 ~~l~  174 (217)
                      ++|.
T Consensus       138 ~~l~  141 (142)
T TIGR02528       138 DYLN  141 (142)
T ss_pred             HHHh
Confidence            9874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.92  E-value=8e-24  Score=166.70  Aligned_cols=159  Identities=15%  Similarity=0.160  Sum_probs=117.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cchhh---hcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITT---AYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~---~~~~~~   88 (217)
                      ..|+|+|.||||||||+++|.+........+.++.......+.+++ ...+.|||+||..+.    ..+..   ..+..+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            5799999999999999999998654433333444455555555543 257899999997432    12222   334579


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           89 MGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        89 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      +++++|+|+++.   ++++.+..|.+++..+..  .+.|+++|+||+|+.+.  ....+..+.+....+.+++++||+++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            999999999976   678888888888876542  36899999999998653  22334455566666789999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDI  177 (217)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (217)
                      .|+++++++|.+.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.3e-23  Score=146.81  Aligned_cols=154  Identities=52%  Similarity=0.876  Sum_probs=119.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC
Q 027918           20 LIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        20 v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (217)
                      |+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44444444 6666666666666789999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           99 DESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        99 ~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ++.+...+..|. ..+......+.|+++|+||+|+..............+.....++++++|+.++.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988888873 2333334457999999999998553222111113444555668999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=1.5e-24  Score=160.89  Aligned_cols=152  Identities=16%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC-----------cccccchhh
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITT   82 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~   82 (217)
                      ..++|+++|.+|+|||||+++|.+..+.....++.+..  ...+...    .+.+|||||           .+.++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            45799999999999999999999887665555554433  2333322    589999999           455666655


Q ss_pred             hccc----CCcEEEEEEeCCChhhH-H---------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027918           83 AYYR----GAMGILLVYDVTDESSF-N---------NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA  148 (217)
Q Consensus        83 ~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~  148 (217)
                      .++.    .++++++|+|.++...+ +         ....+...+..   .+.|+++|+||+|+.+..    .+...+++
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~----~~~~~~~~  154 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR----DEVLDEIA  154 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH----HHHHHHHH
Confidence            5554    35788888887653221 0         00112222222   368999999999985422    33455555


Q ss_pred             HHhCC---------eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          149 DEYGI---------KFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       149 ~~~~~---------~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      ...+.         +++++||++| |+++++++|.+.+.+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            55554         4799999999 999999999987654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.92  E-value=1.7e-23  Score=149.25  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhccc--CCcEE
Q 027918           20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYYR--GAMGI   91 (217)
Q Consensus        20 v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~--~~d~~   91 (217)
                      |+|.+|+|||||++++.+..+.....++.+.+.....+.+++  ..+.+|||||+..+..      ++..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765554556666666666667776  5899999999887654      2455554  89999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|+|+.+++..   ..|...+...   +.|+++|+||+|+.+.. ... .....+....+.+++++|+.+|.|++++++
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~~---~~~~iiv~NK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~  150 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLEL---GLPVVVALNMIDEAEKR-GIK-IDLDKLSELLGVPVVPTSARKGEGIDELKD  150 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHHc---CCCEEEEEehhhhcccc-cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence            999999876543   2344344332   68999999999986532 222 234566777788999999999999999999


Q ss_pred             HHHHH
Q 027918          172 SIARD  176 (217)
Q Consensus       172 ~l~~~  176 (217)
                      +|.+.
T Consensus       151 ~l~~~  155 (158)
T cd01879         151 AIAEL  155 (158)
T ss_pred             HHHHH
Confidence            98875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.92  E-value=4.6e-24  Score=149.46  Aligned_cols=148  Identities=20%  Similarity=0.267  Sum_probs=109.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--cC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~   87 (217)
                      |+|+++|.||+|||||+|+|.+........++.+.+.....+...+  ..+.++|+||......      ....++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999999987777788888888888888887  6899999999544322      223333  58


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      .|++++|+|+++.+.   --++...+...   +.|+++|+||+|......  ..-+...+.+..+++++.+||+++.|++
T Consensus        79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~~  150 (156)
T PF02421_consen   79 PDLIIVVVDATNLER---NLYLTLQLLEL---GIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGID  150 (156)
T ss_dssp             SSEEEEEEEGGGHHH---HHHHHHHHHHT---TSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred             CCEEEEECCCCCHHH---HHHHHHHHHHc---CCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence            999999999987542   22333334433   799999999999743211  2234667778889999999999999999


Q ss_pred             HHHHHH
Q 027918          168 QVFFSI  173 (217)
Q Consensus       168 ~l~~~l  173 (217)
                      ++++.|
T Consensus       151 ~L~~~I  156 (156)
T PF02421_consen  151 ELKDAI  156 (156)
T ss_dssp             HHHHHH
T ss_pred             HHHhhC
Confidence            998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.1e-22  Score=164.16  Aligned_cols=159  Identities=18%  Similarity=0.227  Sum_probs=119.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccc----ccchhhh---cccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTITTA---YYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~   87 (217)
                      ..|+|+|.||||||||+++|++........+.++.......+.++ +  ..+.|||+||...    ...+...   .+..
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            389999999999999999999876443334444555555555554 3  5899999999643    1123333   3456


Q ss_pred             CcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           88 AMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        88 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ++++++|+|+++.   +.++++..|.+.+..+..  .+.|++||+||+|+..     ..+..+.+....+.+++++||++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~t  311 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALT  311 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCC
Confidence            9999999999864   677788888888877643  3689999999999843     23445566666668899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 027918          163 NLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (217)
                      +.|+++++++|.+.+....
T Consensus       312 geGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        312 GQGLDELLYAVAELLEETP  330 (424)
T ss_pred             CCCHHHHHHHHHHHHHhCc
Confidence            9999999999998876543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.91  E-value=1.8e-23  Score=151.61  Aligned_cols=154  Identities=23%  Similarity=0.257  Sum_probs=107.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccc----ccch---hhhcccCCcEE
Q 027918           20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQER----FRTI---TTAYYRGAMGI   91 (217)
Q Consensus        20 v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~----~~~~---~~~~~~~~d~~   91 (217)
                      ++|++|+|||||+++|.+........+..+.+.....+.++ +  ..+.+|||||...    ...+   +...++.+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            58999999999999999876522222333344444445555 4  6899999999642    1222   23356789999


Q ss_pred             EEEEeCCCh------hhHHHHHHHHHHHHHhcC-------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918           92 LLVYDVTDE------SSFNNIRNWIRNIEQHAS-------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus        92 i~v~d~~~~------~s~~~~~~~~~~l~~~~~-------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                      ++|+|+.+.      .++..+..|...+.....       .+.|+++|+||+|+... ...............+..++++
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA-EELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch-hHHHHHHHHHHhcCCCCCEEEE
Confidence            999999988      577777778777765432       26899999999998542 1111111223334445789999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (217)
                      ||+++.|++++++++.+.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.8e-23  Score=171.06  Aligned_cols=155  Identities=19%  Similarity=0.203  Sum_probs=112.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAY   84 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~   84 (217)
                      ..++|+|+|.+|+|||||+|+|++.... ....++.+.+.....+.+++  ..+.||||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4479999999999999999999987643 34456666666666666766  5689999999763        33345567


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      ++.+|++++|+|++++.+... ..|...+..   .+.|+++|+||+|+...    ..+..+.+....+ .++++||++|.
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~----~~~~~~~~~~g~~-~~~~iSA~~g~  185 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERG----EADAAALWSLGLG-EPHPVSALHGR  185 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCcc----chhhHHHHhcCCC-CeEEEEcCCCC
Confidence            889999999999998765432 334444443   36899999999998532    1122222222222 45799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIKQ  179 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (217)
                      |++++|++|.+.+..
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.91  E-value=8.3e-23  Score=145.30  Aligned_cols=146  Identities=23%  Similarity=0.232  Sum_probs=108.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~   86 (217)
                      ++|+++|++|+|||||++++.+.... ....++.+.+.....+..++  ..+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 23344445555555555555  67899999997655321        234667


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      .+|++++|+|++++.+......+..      ..+.|+++|+||+|+.+....        .......+++++||+++.|+
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence            8999999999998777666554432      236899999999998653221        33444578999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          167 EQVFFSIARDI  177 (217)
Q Consensus       167 ~~l~~~l~~~~  177 (217)
                      ++++++|...+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999987754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.3e-23  Score=138.83  Aligned_cols=156  Identities=21%  Similarity=0.443  Sum_probs=122.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+.+|..++||||++.+|..+. +.+..+|++  +....+.+.+  +.+++||.+|+++.+.+|++||....++||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN--~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeee--eEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            46899999999999999999998765 344566666  5556667766  899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~  167 (217)
                      |+|..+++.++..+.-+..+... .-.+.|++|.+||.|++++   ...+++..+..     ...|.+.++++.+|.|+.
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A---~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA---MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc---cCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999887777666644433222 2246889999999999764   34455555432     234678899999999999


Q ss_pred             HHHHHHHHHH
Q 027918          168 QVFFSIARDI  177 (217)
Q Consensus       168 ~l~~~l~~~~  177 (217)
                      |-|.||.+.+
T Consensus       168 eglswlsnn~  177 (180)
T KOG0071|consen  168 EGLSWLSNNL  177 (180)
T ss_pred             HHHHHHHhhc
Confidence            9999998765

>TIGR00436 era GTP-binding protein Era

Probab=99.91  E-value=3.8e-23  Score=159.71  Aligned_cols=154  Identities=19%  Similarity=0.101  Sum_probs=105.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRG   87 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~   87 (217)
                      +|+|+|.+|+|||||+|+|.+..+.. +..+.++.... ..+...+. .++.||||||......        .....+..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i-~~i~~~~~-~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI-SGIHTTGA-SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE-EEEEEcCC-cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            68999999999999999999987643 22232322222 22222222 5799999999754211        13346789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (217)
                      +|++++|+|+++..+..  ..++..+...   +.|+++|+||+|+.+  ..........+....+. +++++||++|.|+
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~---~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi  152 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQNL---KRPVVLTRNKLDNKF--KDKLLPLIDKYAILEDFKDIVPISALTGDNT  152 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHhc---CCCEEEEEECeeCCC--HHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence            99999999999876553  3444444432   689999999999853  11122333344444444 7999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      ++++++|.+.+.+
T Consensus       153 ~~L~~~l~~~l~~  165 (270)
T TIGR00436       153 SFLAAFIEVHLPE  165 (270)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999887644

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.91  E-value=1e-22  Score=166.19  Aligned_cols=154  Identities=23%  Similarity=0.247  Sum_probs=118.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~   83 (217)
                      ...++|+++|++|+|||||+|+|++.... ....++.+.++....+.+++  ..+.+|||||...+...        ...
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~  278 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK  278 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence            45589999999999999999999987542 34456666777777778877  57899999998654432        235


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      +++.+|++++|+|++++.+.+..  |+..+..   .+.|+++|+||+|+...       ....++...+.+++.+|+++ 
T Consensus       279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~-  345 (442)
T TIGR00450       279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-  345 (442)
T ss_pred             HHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-
Confidence            77899999999999988876655  6655533   36899999999998542       12344566677899999998 


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      .|++++|+.|.+.+....
T Consensus       346 ~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       346 LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.90  E-value=6.3e-24  Score=142.54  Aligned_cols=158  Identities=22%  Similarity=0.425  Sum_probs=124.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+.+.++|..+||||||+|.++.+.+.+...++.+..  ...+.-.+  +.+.+||.||+..++++|..|++..++++||
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn--mrk~tkgn--vtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN--MRKVTKGN--VTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce--eEEeccCc--eEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            4789999999999999999999999998888888744  44444444  8999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +|+.+++.++-.+.-+..+.... -.++|++|++||.|++++   ....++.+-     .....+..|.+|+++..+++-
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A---L~~~~li~rmgL~sitdREvcC~siScke~~Nid~  172 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA---LSKIALIERMGLSSITDREVCCFSISCKEKVNIDI  172 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc---ccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence            99999887766666444443322 247999999999998663   222222111     112236789999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          169 VFFSIARDIKQ  179 (217)
Q Consensus       169 l~~~l~~~~~~  179 (217)
                      +.+||+++-..
T Consensus       173 ~~~Wli~hsk~  183 (186)
T KOG0075|consen  173 TLDWLIEHSKS  183 (186)
T ss_pred             HHHHHHHHhhh
Confidence            99999987543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=1.3e-22  Score=167.87  Aligned_cols=162  Identities=22%  Similarity=0.205  Sum_probs=115.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccchh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT   81 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~   81 (217)
                      +..++|+|+|.+|+|||||+++|++.... ....++++.+.....+..++  ..+.||||||..          .+..+.
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~  286 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR  286 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence            34689999999999999999999987643 44556666666666677777  467899999953          222221


Q ss_pred             -hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHH-HHHHHhCCeEEEE
Q 027918           82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQ-ALADEYGIKFFET  158 (217)
Q Consensus        82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~-~~~~~~~~~~~~~  158 (217)
                       ..+++.+|++++|+|++++.+..++. ++..+..   .+.|+|+|+||+|+.+... .....++. .+......+++++
T Consensus       287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence             23578999999999999987777664 3444433   3689999999999864211 11111111 1222223689999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ||++|.|++++|..+.+.+...
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999998877543

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.5e-22  Score=148.40  Aligned_cols=155  Identities=19%  Similarity=0.171  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcc----------------cceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFI----------------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      +|+|+|.+|+|||||++.|++........                .+.+.+.....+...+  ..+.||||||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence            58999999999999999999876554321                1222333333344444  68999999999988888


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHH---------
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADE---------  150 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~---------  150 (217)
                      +..+++.+|++++|+|+.++..... ..++..+..   .+.|+++|+||+|+... ......+........         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8889999999999999987654332 233333333   36899999999998642 111122333333332         


Q ss_pred             -----hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          151 -----YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                           ...+++++||++|.|+++++++|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 347899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.90  E-value=7.8e-23  Score=150.58  Aligned_cols=160  Identities=18%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC----CCC---CCcccceeeeEEEEEEEEC------------CeEEEEEEeeCCCccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG----SFT---TSFITTIGIDFKIRTIELD------------GKRIKLQIWDTAGQER   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~----~~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~Dt~G~~~   76 (217)
                      ++|+++|.+++|||||+++|...    .+.   ....++.+.+.....+.+.            +....+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999873    111   1112233333333333332            2247899999999876


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHH-HH-----
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQAL-AD-----  149 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~-~~-----  149 (217)
                      +..........+|++++|+|+.+.........+.  +....  +.|+++|+||+|+.... .....++.... ..     
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5443334456789999999998754433333222  11211  57999999999985321 11112222221 11     


Q ss_pred             -HhCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          150 -EYGIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                       ..+++++++||++|.|+++++++|.+.+..
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence             134789999999999999999999887753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.6e-22  Score=165.82  Aligned_cols=148  Identities=25%  Similarity=0.237  Sum_probs=113.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   85 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   85 (217)
                      .++|+++|.+|+|||||+|+|.+.... ....++.+.++....+.+++  ..+.+|||||...+...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            489999999999999999999987643 44456666677777777777  67899999998754432        22367


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      ..+|++++|+|++++.+.+....|..      ..+.|+++|+||+|+..... ..        ...+.+++++||++|.|
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCCCC
Confidence            89999999999998877765544433      23689999999999854211 11        33456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQ  179 (217)
Q Consensus       166 i~~l~~~l~~~~~~  179 (217)
                      +++++++|.+.+..
T Consensus       358 I~~L~~~L~~~l~~  371 (449)
T PRK05291        358 IDELREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=3.2e-22  Score=163.45  Aligned_cols=163  Identities=16%  Similarity=0.180  Sum_probs=117.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cch---hhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTI---TTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~---~~~~~~~~   88 (217)
                      .+|+|+|.||||||||+++|.+........+.++.......+.+.+  ..+.|||+||....    ..+   ....+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5899999999999999999998755444445555666666666666  68999999996321    111   22345779


Q ss_pred             cEEEEEEeCCC----hhhHHHHHHHHHHHHHhcC-----------CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918           89 MGILLVYDVTD----ESSFNNIRNWIRNIEQHAS-----------DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  153 (217)
Q Consensus        89 d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~-----------~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      +++|+|+|+++    ++.+.++..|..++..+..           .+.|++||+||+|+++. .. ..+.........++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~e-l~e~l~~~l~~~g~  315 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RE-LAEFVRPELEARGW  315 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HH-HHHHHHHHHHHcCC
Confidence            99999999975    3355666666666654431           35899999999998642 11 12222333344578


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          154 KFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      +++++||+++.|+++++.+|.+.+.....
T Consensus       316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        316 PVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999998876553

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=1.7e-22  Score=143.74  Aligned_cols=146  Identities=20%  Similarity=0.155  Sum_probs=101.7

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhcccCCc
Q 027918           19 LLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYRGAM   89 (217)
Q Consensus        19 ~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~~d   89 (217)
                      +++|.+|+|||||+++|++.... ....+..+.+........++  ..+.+|||||...+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47999999999999999986422 12233334444555555555  6899999999877543        3345678899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQ  168 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~  168 (217)
                      ++++|+|..++.+.... .+...+...   +.|+++|+||+|+.+...     . .......+. +++++|+++|.|+++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~-----~-~~~~~~~~~~~~~~~Sa~~~~gv~~  148 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEED-----E-AAEFYSLGFGEPIPISAEHGRGIGD  148 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHH-----H-HHHHHhcCCCCeEEEecccCCCHHH
Confidence            99999999875443332 222333322   589999999999865211     1 222333455 789999999999999


Q ss_pred             HHHHHHHH
Q 027918          169 VFFSIARD  176 (217)
Q Consensus       169 l~~~l~~~  176 (217)
                      ++++|.+.
T Consensus       149 l~~~l~~~  156 (157)
T cd01894         149 LLDAILEL  156 (157)
T ss_pred             HHHHHHhh
Confidence            99999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK15494 era GTPase Era; Provisional

Probab=99.89  E-value=3.8e-22  Score=158.31  Aligned_cols=158  Identities=21%  Similarity=0.252  Sum_probs=109.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchh-------hh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTIT-------TA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~-------~~   83 (217)
                      ...++|+++|.+|+|||||+|+|.+..+.. +..+..+.......+..++  .++.||||||... +..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            345799999999999999999999887652 1222223333334455565  5789999999743 22221       12


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSA  160 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa  160 (217)
                      .+..+|++++|+|..+  ++.... .|+..+...   +.|+++|+||+|+...    ...++..++....  ..++++||
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~----~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK----YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc----cHHHHHHHHHhcCCCcEEEEEec
Confidence            4679999999999765  333333 355555443   4677889999998542    2344555555443  58999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 027918          161 KTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      ++|.|+++++++|.+.+.+..
T Consensus       199 ktg~gv~eL~~~L~~~l~~~~  219 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAKISP  219 (339)
T ss_pred             cCccCHHHHHHHHHHhCCCCC
Confidence            999999999999988775543

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.89  E-value=1.6e-21  Score=132.00  Aligned_cols=166  Identities=27%  Similarity=0.414  Sum_probs=135.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccc-cchhhhcccCCcE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERF-RTITTAYYRGAMG   90 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~d~   90 (217)
                      ..||+|+|..++|||+++.+|+.....  ..+.+|.+ +++...+.. ++.+-.+.|+||.|...+ ..+-++|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            369999999999999999999865443  33445543 455555544 444568999999998887 5577889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +++||+..+++||+.+..+...|.+... ..+||++++||+|+.+ .+.+..+.++.|+..-.+.++++++.+...+-+.
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~-p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE-PREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc-chhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            9999999999999988887777766543 4699999999999975 6778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 027918          170 FFSIARDIKQRLA  182 (217)
Q Consensus       170 ~~~l~~~~~~~~~  182 (217)
                      |.+|...+.+...
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999988765443

>PRK11058 GTPase HflX; Provisional

Probab=99.89  E-value=5.3e-22  Score=161.12  Aligned_cols=158  Identities=22%  Similarity=0.222  Sum_probs=113.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--cchhh------hccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--RTITT------AYYR   86 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~------~~~~   86 (217)
                      .++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+.+.+. ..+.+|||+|....  ...+.      ..+.
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            468999999999999999999987765444555556666556666542 26789999997432  12222      2468


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe-EEEEcCCCCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLN  165 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  165 (217)
                      .+|++++|+|++++.+.+.+..|...+......+.|+++|+||+|+.....    ....  ....+.+ ++.+||++|.|
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~~--~~~~~~~~~v~ISAktG~G  349 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRID--RDEENKPIRVWLSAQTGAG  349 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHHH--HHhcCCCceEEEeCCCCCC
Confidence            899999999999998877776665555554444689999999999853211    1111  1123444 58899999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQ  179 (217)
Q Consensus       166 i~~l~~~l~~~~~~  179 (217)
                      +++++++|.+.+..
T Consensus       350 IdeL~e~I~~~l~~  363 (426)
T PRK11058        350 IPLLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999988754

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.89  E-value=1.3e-22  Score=138.10  Aligned_cols=114  Identities=37%  Similarity=0.667  Sum_probs=87.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      ||+|+|++|+|||||+++|++....  ..+....+.++.............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998776  22233334445545566666666799999999998888888789999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 027918           95 YDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~---~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ||++++++++.+..+   +..+..... +.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~-~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDK-NIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSS-CSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCC-CCCEEEEEeccC
Confidence            999999999887554   555555444 599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01895 EngA2 EngA2 subfamily

Probab=99.89  E-value=1.3e-21  Score=141.40  Aligned_cols=156  Identities=26%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----------hhh
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT   82 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~   82 (217)
                      .++|+++|.+|+|||||+++|.+.... ....++.+.+.....+..++  ..+.+||+||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            479999999999999999999987533 22233333344444455555  4688999999643311           112


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh----CCeEEEE
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY----GIKFFET  158 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (217)
                      ..+..+|++++|+|+.++.+..... ++..+..   .+.|+++++||+|+..............+....    ..+++++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3457899999999999886654432 2333322   268999999999986532111111122222322    3689999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (217)
                      ||+++.|++++++++.+.
T Consensus       156 Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         156 SALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             eccCCCCHHHHHHHHHHh
Confidence            999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=4.8e-22  Score=167.52  Aligned_cols=157  Identities=21%  Similarity=0.324  Sum_probs=115.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCC-------CCCCcc--------cceeeeEEEEEEEE---CCeEEEEEEeeCCCccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFI--------TTIGIDFKIRTIEL---DGKRIKLQIWDTAGQER   76 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~-------~~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~   76 (217)
                      .-+|+|+|..++|||||+++|+...       +...+.        .+.++......+.+   ++..+.++||||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3489999999999999999998642       111111        12232222233333   45568999999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC---
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI---  153 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---  153 (217)
                      |...+..+++.+|++|+|+|+++..+..+...|...+.    .+.|+++|+||+|+....   ......++...++.   
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~  155 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS  155 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998766666666654433    268999999999985421   12233455555554   


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          154 KFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      .++++||++|.|++++|++|.+.+.
T Consensus       156 ~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       156 EAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eEEEeeccCCCCHHHHHHHHHHhCC
Confidence            4899999999999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=4.5e-22  Score=141.81  Aligned_cols=143  Identities=21%  Similarity=0.226  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh----hhcccCCcEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----TAYYRGAMGIL   92 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~d~~i   92 (217)
                      +|+++|.+|+|||||+++|.+.....  ..+       ..+.+...    .+|||||.......+    ...++.+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~-------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT-------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc-------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999988653111  111       12222222    269999973222212    22368999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC--eEEEEcCCCCCCHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI--KFFETSAKTNLNVEQVF  170 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~l~  170 (217)
                      +|+|+++..++  +..|+..+    ..+.|+++++||+|+.+    ...+....++...++  +++++||++|.|++++|
T Consensus        70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467         70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence            99999987764  22343332    12578999999999854    234556677777774  89999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 027918          171 FSIARDIKQRLA  182 (217)
Q Consensus       171 ~~l~~~~~~~~~  182 (217)
                      ++|.+.+.....
T Consensus       140 ~~l~~~~~~~~~  151 (158)
T PRK15467        140 DYLASLTKQEEA  151 (158)
T ss_pred             HHHHHhchhhhc
Confidence            999887755443

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-24  Score=151.11  Aligned_cols=172  Identities=34%  Similarity=0.608  Sum_probs=148.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE-EEEEEeeCCCcccccchhhhcccCCcE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .+..++++|+|.-|+|||+++.++....++..+..+.+.++......++.+. +++.|||..|++++..+..-+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            5788999999999999999999999988988899999998888888887654 789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN  165 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  165 (217)
                      .++|||.++.-+|+....|.+.+....    +...|+++..||||+..............|.+++++ .++++|++.+.+
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            999999999999999999999996644    234677888999998654443445677788888886 899999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 027918          166 VEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~~~  183 (217)
                      ++|+.+.|++.+.-.-.+
T Consensus       182 i~Ea~r~lVe~~lvnd~q  199 (229)
T KOG4423|consen  182 IPEAQRELVEKILVNDEQ  199 (229)
T ss_pred             hhHHHHHHHHHHHhhccC
Confidence            999999999988765443

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.88  E-value=1.9e-21  Score=163.20  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=113.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      .+.++|+++|..++|||||+++|.+..+.....++.+.+.....+.+++. ..+.||||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            35579999999999999999999988777655555555665555666443 27999999999999999988899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEcCCCC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN  163 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  163 (217)
                      +|+|+++.........+ ..+.   ..+.|+++++||+|+.+.    ..+.........       +  .+++++||++|
T Consensus       164 LVVda~dgv~~qT~e~i-~~~~---~~~vPiIVviNKiDl~~~----~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktG  235 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHAK---AANVPIIVAINKIDKPEA----NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTG  235 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHHH---HcCCCEEEEEECcccccC----CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCC
Confidence            99999874322222222 2222   236899999999998542    222333332222       1  47999999999


Q ss_pred             CCHHHHHHHHHH
Q 027918          164 LNVEQVFFSIAR  175 (217)
Q Consensus       164 ~~i~~l~~~l~~  175 (217)
                      .|+++++++|..
T Consensus       236 eGI~eLl~~I~~  247 (587)
T TIGR00487       236 DGIDELLDMILL  247 (587)
T ss_pred             CChHHHHHhhhh
Confidence            999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=4.3e-21  Score=157.79  Aligned_cols=160  Identities=26%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh----------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT----------   81 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------   81 (217)
                      +..++|+++|.+|+|||||+++|++.... ....++.+.+.....+..++  ..+.+|||||........          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            45689999999999999999999986533 33345555555555566666  478999999975543221          


Q ss_pred             -hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH----hCCeE
Q 027918           82 -TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE----YGIKF  155 (217)
Q Consensus        82 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~  155 (217)
                       ...++.+|++++|+|++++.+..+.. ++..+..   .+.|+++|+||+|+.+  .....++.. .+...    ..+++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~v  321 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVK--DEKTREEFKKELRRKLPFLDFAPI  321 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCC--CHHHHHHHHHHHHHhcccCCCCce
Confidence             24678999999999999877665543 3333333   2689999999999862  111111221 12122    23789


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      +++||++|.|++++|+++.+.+...
T Consensus       322 i~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       322 VFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=4.6e-22  Score=134.89  Aligned_cols=166  Identities=23%  Similarity=0.497  Sum_probs=141.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      .-.+||.++|++..|||||+-++.++.+.+.+..+.+..+..+++.+.+.++.+.+||.+|++++..+.+....++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            34589999999999999999999999998889999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC----hHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP----TSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |+||++.+.++..+..|+...+......+| |+|++|.|..-.-....    ...+..+++-.+.+++++|+..+.|+..
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999999887655455 56799999632211112    2335566677789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          169 VFFSIARDIKQ  179 (217)
Q Consensus       169 l~~~l~~~~~~  179 (217)
                      +|..+...+..
T Consensus       177 IFK~vlAklFn  187 (205)
T KOG1673|consen  177 IFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHhC
Confidence            99988877754

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.9e-21  Score=155.20  Aligned_cols=163  Identities=17%  Similarity=0.187  Sum_probs=118.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~   88 (217)
                      ..|.|+|.||||||||+|+|.+........+.+|.......+...+. ..+.|+||||..+-.       ......+..+
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            38999999999999999999987655444555555555555555432 369999999964311       1122356789


Q ss_pred             cEEEEEEeCC---ChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCC
Q 027918           89 MGILLVYDVT---DESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK  161 (217)
Q Consensus        89 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  161 (217)
                      +++++|+|++   +.+.++.+..|++.+..+..  .+.|+++|+||+|+...  ....+.+..+....+  .+++.+||+
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~~~~~~~~~Vi~ISA~  316 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIVEALGWEGPVYLISAA  316 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            9999999988   45667777888888876542  25799999999998542  112334445555444  378999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 027918          162 TNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~~  181 (217)
                      ++.|++++++.|.+.+.+..
T Consensus       317 tg~GIdeLl~~I~~~L~~~~  336 (390)
T PRK12298        317 SGLGVKELCWDLMTFIEENP  336 (390)
T ss_pred             CCcCHHHHHHHHHHHhhhCc
Confidence            99999999999998886543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.88  E-value=1.5e-21  Score=167.45  Aligned_cols=158  Identities=19%  Similarity=0.201  Sum_probs=114.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ..+.+.|+|+|..++|||||+++|.+..+......+.+.+.....+.+++  ..++||||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            35668999999999999999999998777655455555555555666665  5799999999999999998889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH---HHHHHhC--CeEEEEcCCCCCCH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ---ALADEYG--IKFFETSAKTNLNV  166 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~--~~~~~~Sa~~~~~i  166 (217)
                      |+|||+++.........|    ......++|+||++||+|+.+........++.   .++..++  ++++++||++|.|+
T Consensus       365 ILVVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI  440 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI  440 (787)
T ss_pred             EEEEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence            999999874322222222    22222368999999999985421111111111   1122333  68999999999999


Q ss_pred             HHHHHHHHH
Q 027918          167 EQVFFSIAR  175 (217)
Q Consensus       167 ~~l~~~l~~  175 (217)
                      +++|++|..
T Consensus       441 ~eLle~I~~  449 (787)
T PRK05306        441 DELLEAILL  449 (787)
T ss_pred             hHHHHhhhh
Confidence            999999875

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=1.3e-21  Score=166.57  Aligned_cols=161  Identities=17%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeE--EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ...+.|+|+|..++|||||+++|.+..+......+.+.+.  +...+..++....+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4567999999999999999999998766544443333332  33333333344799999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhC--CeEEEEcCCCCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLN  165 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~  165 (217)
                      +|+|+|+++.........| ..+   ...+.|+|+++||+|+.........+.+..+   ...++  ++++++||++|.|
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G  397 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN  397 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence            9999999875332222222 122   2236899999999998642111111111111   22233  6899999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDI  177 (217)
Q Consensus       166 i~~l~~~l~~~~  177 (217)
                      +++++++|....
T Consensus       398 IdeLle~I~~l~  409 (742)
T CHL00189        398 IDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhhhhhh
Confidence            999999987653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=1.1e-21  Score=144.00  Aligned_cols=159  Identities=21%  Similarity=0.219  Sum_probs=110.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------------CcccceeeeEEEEEEE--ECCeEEEEEEeeCCC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIE--LDGKRIKLQIWDTAG   73 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G   73 (217)
                      +.++|+|+|+.++|||||+.+|+......                  ......+.......+.  .++  ..++|+|+||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~--~~i~~iDtPG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENN--RKITLIDTPG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESS--EEEEEEEESS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccc--cceeeccccc
Confidence            56899999999999999999998543211                  1122334444455555  444  7999999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHHh-
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADEY-  151 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~~-  151 (217)
                      +..|.......+..+|++|+|+|+.++-... ....+..+...   +.|+++|+||+|+.........+++. .+.+.. 
T Consensus        80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             SHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            9998888888899999999999998764432 22333334433   68999999999986211111112222 333333 


Q ss_pred             -----CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          152 -----GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       152 -----~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                           .++++++||.+|.|++++++.|.+.+.
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence                 257999999999999999999988763

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=1.2e-21  Score=142.72  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=97.6

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cc
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RF   77 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~   77 (217)
                      .+.+....++|+|+|.+|+|||||+++|.+..+.....++.+.......+..++   .+.+|||||..          .+
T Consensus        11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~   87 (179)
T TIGR03598        11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW   87 (179)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence            355557778999999999999999999998753322222222222222233333   68999999953          23


Q ss_pred             cchhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-
Q 027918           78 RTITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG-  152 (217)
Q Consensus        78 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-  152 (217)
                      ..+...+++   .++++++|+|++++-+..+. .++..+..   .+.|+++|+||+|+.... .....++++......+ 
T Consensus        88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~  163 (179)
T TIGR03598        88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD  163 (179)
T ss_pred             HHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence            333334444   35799999999876544433 22333433   268999999999985421 1122344444444443 


Q ss_pred             -CeEEEEcCCCCCCHH
Q 027918          153 -IKFFETSAKTNLNVE  167 (217)
Q Consensus       153 -~~~~~~Sa~~~~~i~  167 (217)
                       +.++++||++|+|++
T Consensus       164 ~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       164 DPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCceEEEECCCCCCCC
Confidence             589999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=2.7e-21  Score=142.77  Aligned_cols=161  Identities=19%  Similarity=0.177  Sum_probs=102.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccch
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI   80 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~   80 (217)
                      ..+..++|+|+|.+|+|||||+++|.+..+.....++.+.+........+   ..+.||||||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN---DKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC---CeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            34567899999999999999999999875433333333322222222222   589999999942          33333


Q ss_pred             hhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHHHhCCeEE
Q 027918           81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALADEYGIKFF  156 (217)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~  156 (217)
                      ...+++.   .+++++++|..++.+.... .+...+..   .+.|+++++||+|+.+... ....+.+..+......+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            4444543   4678888888765443221 11222222   2689999999999854211 1112223344443357899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ++||++|.|++++++.|.+.+.
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999987764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=3.3e-21  Score=158.43  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhcccC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYRG   87 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~   87 (217)
                      +|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987643 33345556666666677777  579999999963        344455667889


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (217)
                      +|++++|+|+.++.+..+ ..+...+.+.   +.|+++|+||+|+.....     ...++ ...+. +++++||.+|.|+
T Consensus        79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~-----~~~~~-~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        79 ADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDA-----VAAEF-YSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             CCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCcccc-----cHHHH-HhcCCCCeEEEeCCcCCCh
Confidence            999999999987544332 1223333332   689999999999854221     12222 34555 7999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++++++.+.+..
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999998877643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.87  E-value=6.2e-21  Score=160.70  Aligned_cols=155  Identities=20%  Similarity=0.246  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +.|+++|.+++|||||+++|.+..   +.+...++.+.+.....+..++  ..+.|||+||++.|.......+..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999999733   3344556667777666677766  78999999999999888888889999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHh----CCeEEEEcCCCC
Q 027918           93 LVYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEY----GIKFFETSAKTN  163 (217)
Q Consensus        93 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~~Sa~~~  163 (217)
                      +|+|++++   .+.+.+.    .+...   ++| +++|+||+|+.+... ....+++..+....    +++++++||++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            99999883   4443332    22222   567 999999999865221 11233455555544    478999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDIKQ  179 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~  179 (217)
                      .|++++++.|...+..
T Consensus       152 ~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       152 QGIGELKKELKNLLES  167 (581)
T ss_pred             CCchhHHHHHHHHHHh
Confidence            9999999988776644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=6.5e-21  Score=141.23  Aligned_cols=117  Identities=19%  Similarity=0.396  Sum_probs=88.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC-cEEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA-MGILLVY   95 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~-d~~i~v~   95 (217)
                      +|+++|++|+|||+|+++|....+..++.++ ............+....+.|||+||+.+++..+..+++.+ +++|||+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6999999999999999999998776665443 2222222222112336899999999999998888899998 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCC
Q 027918           96 DVTDE-SSFNNIRNWIRNIEQH---ASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        96 d~~~~-~s~~~~~~~~~~l~~~---~~~~~pvivv~nK~Dl~~  134 (217)
                      |+.+. .++..+..|+..+...   ...+.|+++|+||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6677766665544322   124799999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=3.8e-21  Score=142.66  Aligned_cols=160  Identities=17%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEEEEC---------------------------C----
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELD---------------------------G----   61 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~---------------------------~----   61 (217)
                      ++|+++|..|+|||||+..+.+...   ........+.......+.+.                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999975421   11111111111111111110                           1    


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVP  140 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~  140 (217)
                      ....+.||||||++.+...+...+..+|++++|+|++++.........+..+....  ..|+++|+||+|+..... ...
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence            11579999999999888877778889999999999987421111111222222221  247899999999854211 111


Q ss_pred             hHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          141 TSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      .+.++.+....   +++++++||++|.|+++++++|.+.+
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            23333333332   56899999999999999999988654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd04163 Era Era subfamily

Probab=99.87  E-value=1.1e-20  Score=135.54  Aligned_cols=156  Identities=18%  Similarity=0.168  Sum_probs=102.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR   86 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   86 (217)
                      ..+|+++|.+|+|||||++++.+..+........+........ .......+.+|||||......        .....+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE-EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999876542222111111111111 222236899999999654322        2344578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLN  165 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (217)
                      .+|++++|+|+.++.+ .....+...+...   +.|+++|+||+|+... .....+....+..... .+++.+|++++.|
T Consensus        82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            8999999999988622 1122233333332   5799999999998642 2222333444444443 6899999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          166 VEQVFFSIARD  176 (217)
Q Consensus       166 i~~l~~~l~~~  176 (217)
                      ++++++.|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=2.2e-20  Score=161.27  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchh
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTIT   81 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~   81 (217)
                      ......+|+|+|.+|+|||||+|+|++.... ....++.+.+.......+++  ..+.+|||||...        +....
T Consensus       271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~  348 (712)
T PRK09518        271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQA  348 (712)
T ss_pred             ccccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHH
Confidence            3445578999999999999999999987543 33455666666655566666  5799999999653        23344


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcC
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSA  160 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (217)
                      ..++..+|++++|+|+.+.-... -..|...+..   .+.|+++|+||+|+...     ......+. ..+. ..+++||
T Consensus       349 ~~~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~-----~~~~~~~~-~lg~~~~~~iSA  418 (712)
T PRK09518        349 QIAVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQAS-----EYDAAEFW-KLGLGEPYPISA  418 (712)
T ss_pred             HHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccc-----hhhHHHHH-HcCCCCeEEEEC
Confidence            55788999999999997642211 1234555543   36899999999997531     11122222 2232 4579999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~  179 (217)
                      ++|.|+++++++|.+.+..
T Consensus       419 ~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        419 MHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             CCCCCchHHHHHHHHhccc
Confidence            9999999999999988744

>PRK00089 era GTPase Era; Reviewed

Probab=99.86  E-value=1.2e-20  Score=147.61  Aligned_cols=158  Identities=18%  Similarity=0.184  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc--------chhhhcccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--------TITTAYYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~   87 (217)
                      -.|+|+|.+|||||||+|+|++..+........++......+...+ ...+.++||||.....        ......+..
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~-~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~   84 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED-DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD   84 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC-CceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence            4699999999999999999999876533222222222222222222 2689999999964422        223346688


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  166 (217)
                      +|++++|+|+++..+ .....++..+..   .+.|+++|+||+|+... ..........+....+ ..++++||+++.|+
T Consensus        85 ~D~il~vvd~~~~~~-~~~~~i~~~l~~---~~~pvilVlNKiDl~~~-~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv  159 (292)
T PRK00089         85 VDLVLFVVDADEKIG-PGDEFILEKLKK---VKTPVILVLNKIDLVKD-KEELLPLLEELSELMDFAEIVPISALKGDNV  159 (292)
T ss_pred             CCEEEEEEeCCCCCC-hhHHHHHHHHhh---cCCCEEEEEECCcCCCC-HHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence            999999999987322 112223333332   25899999999998531 1222334444444444 58999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      ++++++|.+.+.+
T Consensus       160 ~~L~~~L~~~l~~  172 (292)
T PRK00089        160 DELLDVIAKYLPE  172 (292)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999887743

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.6e-21  Score=134.70  Aligned_cols=163  Identities=24%  Similarity=0.372  Sum_probs=121.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC------CCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG------SFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   86 (217)
                      ..+.|+|+|..+||||||+.++...      ..+ ..-.++++.  ..-++..++  ..+.+||.+|++..+++|..||.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgL--nig~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGL--NIGTIEVCN--APLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccce--eecceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence            3478999999999999999987542      111 122344443  334444444  68999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH---hCCeEEEEcCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---YGIKFFETSAKT  162 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~  162 (217)
                      .+|++|++||+++++.++.....+..+... .-.+.|+++.+||.|+.+.............+..   ...++.++||.+
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~  171 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALT  171 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhh
Confidence            999999999999999888877766655433 3358999999999998653222222222222222   236899999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~  180 (217)
                      |+|+++..+|+...+..+
T Consensus       172 gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  172 GEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cccHHHHHHHHHHHHhhc
Confidence            999999999999988766

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.9e-20  Score=154.12  Aligned_cols=146  Identities=22%  Similarity=0.220  Sum_probs=107.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~   86 (217)
                      ++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||...        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999987643 33345555666666677777  7899999999876        2333455778


Q ss_pred             CCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918           87 GAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (217)
                      .+|++++|+|+.++.+..  .+..|+.   ..   +.|+++|+||+|+..     ......++ ...++ .++++||++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~~---~~piilv~NK~D~~~-----~~~~~~~~-~~lg~~~~~~iSa~~g  147 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILR---KS---NKPVILVVNKVDGPD-----EEADAYEF-YSLGLGEPYPISAEHG  147 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---Hc---CCcEEEEEECccCcc-----chhhHHHH-HhcCCCCCEEEEeeCC
Confidence            999999999998754432  2333332   22   689999999999643     11223333 34455 4899999999


Q ss_pred             CCHHHHHHHHHH
Q 027918          164 LNVEQVFFSIAR  175 (217)
Q Consensus       164 ~~i~~l~~~l~~  175 (217)
                      .|++++++.+..
T Consensus       148 ~gv~~l~~~I~~  159 (435)
T PRK00093        148 RGIGDLLDAILE  159 (435)
T ss_pred             CCHHHHHHHHHh
Confidence            999999999887

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=4.2e-21  Score=134.48  Aligned_cols=185  Identities=26%  Similarity=0.501  Sum_probs=152.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      -..++++++|+.|.||||++++.+.+.+..++.++.+.+.+...+.-+...+++..|||.|++.+..+...++-....+|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45689999999999999999999999999999999999998887776666799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      ++||+..+-++.++..|...+.+.+. ++||++.+||.|..+.  . .....-.+.+..++.|++.|++.+.|+..-|.|
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r--~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~  163 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKAR--K-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW  163 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceecccc--c-cccccceeeecccceeEEeecccccccccchHH
Confidence            99999999999999999999988876 5999999999997442  1 233334556677789999999999999999999


Q ss_pred             HHHHHHHHhccc---CCCCCCCccccCCCCCC
Q 027918          173 IARDIKQRLADT---DSRSEPSTIKINQPDQA  201 (217)
Q Consensus       173 l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  201 (217)
                      +.+.+.....-.   +....|..+.++...+.
T Consensus       164 LarKl~G~p~Lefva~paLaPpev~~d~~~~~  195 (216)
T KOG0096|consen  164 LARKLTGDPSLEFVAMPALAPPEVIMDYWLQR  195 (216)
T ss_pred             HhhhhcCCCCeEEEeccccCCCeeeccchhhH
Confidence            998886543322   23334444555444433

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.86  E-value=1.7e-20  Score=158.23  Aligned_cols=146  Identities=19%  Similarity=0.246  Sum_probs=110.7

Q ss_pred             cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch------hhhcc--cCCcEEEE
Q 027918           22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY--RGAMGILL   93 (217)
Q Consensus        22 G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~--~~~d~~i~   93 (217)
                      |.+|+|||||+|+|.+........++.+.+.....+..++  ..+.+|||||+.++...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999999877666677777777777777776  46899999998876543      33333  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |+|+++.+.   ...+...+.+   .+.|+++|+||+|+.+. ... ..+.+.+.+..+++++++||++|.|++++++++
T Consensus        79 VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~-~~i-~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i  150 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEK-KGI-RIDEEKLEERLGVPVVPTSATEGRGIERLKDAI  150 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHh-CCC-hhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            999987432   2223333322   36899999999998542 222 234677788889999999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      .+..
T Consensus       151 ~~~~  154 (591)
T TIGR00437       151 RKAI  154 (591)
T ss_pred             HHHh
Confidence            8753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.86  E-value=7.7e-21  Score=150.78  Aligned_cols=179  Identities=17%  Similarity=0.122  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc---------chhhhcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   85 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~   85 (217)
                      ..|+|+|.||+|||||+|+|.+.... ....+++|.+..+....+.+  ..+.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~--~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG--REFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC--ceEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999998766 66688888888888888887  569999999966432         2344577


Q ss_pred             cCCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           86 RGAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      ..||+++||+|....-+.  +.+..|   ++..   +.|+++|+||+|...     ..+...+|...---.++.+||.+|
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~---Lr~~---~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg  150 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKI---LRRS---KKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG  150 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHH---HHhc---CCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence            899999999999775432  223333   3322   589999999999532     223333443333348899999999


Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCC--CCCCccccCCCCCCCCCCCCc
Q 027918          164 LNVEQVFFSIARDIKQRLADTDSR--SEPSTIKINQPDQAGGVGQAA  208 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  208 (217)
                      .|+.++++.++..+. ........  .++.++.+-.....++++.-+
T Consensus       151 ~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN  196 (444)
T COG1160         151 RGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLIN  196 (444)
T ss_pred             cCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHH
Confidence            999999999999885 22221222  356788888888877776544

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=1.2e-20  Score=159.22  Aligned_cols=160  Identities=24%  Similarity=0.310  Sum_probs=113.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC--CC-----CC--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FT-----TS--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~-----~~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   74 (217)
                      ++.-+|+|+|..++|||||+.+|+...  +.     ..        .....++......+.+   ++..+.++||||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            445689999999999999999998631  11     00        1122222222222322   445689999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-  153 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (217)
                      ..+...+..+++.+|++|+|+|++++....+...|.....    .+.|+++|+||+|+....   ......++....++ 
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~---~~~v~~ei~~~lg~~  157 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD---PERVKQEIEDVIGID  157 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc---HHHHHHHHHHHhCCC
Confidence            9999999999999999999999998765555555543322    268999999999985421   12223344444554 


Q ss_pred             --eEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          154 --KFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                        .++.+||++|.|+++++++|.+.+..
T Consensus       158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        158 ASDAVLVSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             cceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence              48999999999999999999887754

>cd00880 Era_like Era (E

Probab=99.85  E-value=1.7e-20  Score=133.28  Aligned_cols=152  Identities=19%  Similarity=0.136  Sum_probs=104.9

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-------hhhhcccCCcEE
Q 027918           20 LIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAMGI   91 (217)
Q Consensus        20 v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~~   91 (217)
                      |+|++|+|||||++++.+.... .....+.+............ ...+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986554 33444444444444444432 25899999999776543       334577899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH--HHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS--KGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|+|+.+........ +......   .+.|+++|+||+|+..........  .........+.+++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999887655554 3333332   368999999999986532111111  112223334578999999999999999


Q ss_pred             HHHHHHH
Q 027918          170 FFSIARD  176 (217)
Q Consensus       170 ~~~l~~~  176 (217)
                      +++|.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=1.5e-20  Score=141.76  Aligned_cols=159  Identities=19%  Similarity=0.148  Sum_probs=111.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhcccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~~   87 (217)
                      --|+|+|.||+|||||+|+|.+.+.+-.+....++......+...+ ..++.|+||||..+        +.......+.+
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d   85 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSALKD   85 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence            4699999999999999999999988765555555555555554443 36999999999433        22333456789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  166 (217)
                      +|+++||+|++++-.. .....++.+..   .+.|+++++||+|........ ......+..... ..++++||.+|.|+
T Consensus        86 vDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~~g~n~  160 (298)
T COG1159          86 VDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISALKGDNV  160 (298)
T ss_pred             CcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeeccccCCH
Confidence            9999999999874332 22334444544   257999999999986532211 222222222222 48999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQR  180 (217)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (217)
                      +.+.+.+...+.+.
T Consensus       161 ~~L~~~i~~~Lpeg  174 (298)
T COG1159         161 DTLLEIIKEYLPEG  174 (298)
T ss_pred             HHHHHHHHHhCCCC
Confidence            99999998887654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.85  E-value=5e-20  Score=151.68  Aligned_cols=160  Identities=26%  Similarity=0.206  Sum_probs=110.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-----------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------   80 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   80 (217)
                      ...++|+|+|.+|+|||||+++|++... .....++.+.+.....+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3469999999999999999999997653 334455555555555555566  57889999996432211           


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----hCCeEE
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----YGIKFF  156 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~  156 (217)
                      ...+++.+|++++|+|++++.+..+.. +...+..   .+.|+++|+||+|+.+..  ...+....+...    ..++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~~~i~  322 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEK--TMEEFKKELRRRLPFLDYAPIV  322 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHH--HHHHHHHHHHHhcccccCCCEE
Confidence            123678899999999999876655443 3333333   268999999999986311  111111122221    236899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ++||++|.|++++++.+.+.+...
T Consensus       323 ~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        323 FISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988766543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=3.5e-20  Score=160.08  Aligned_cols=158  Identities=22%  Similarity=0.256  Sum_probs=111.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccch-h
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTI-T   81 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~-~   81 (217)
                      ..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++  ..+.||||||..+          |..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987643 33445555666666666777  4677999999542          1111 1


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-HHHHh----CCeEE
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-LADEY----GIKFF  156 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-~~~~~----~~~~~  156 (217)
                      ...++.+|++++|+|++++.+..+... +..+..   .+.|+++|+||+|+.+...   .+..+. +....    ..+++
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~ii  599 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARRV  599 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCEE
Confidence            234688999999999998877766543 333333   3689999999999854211   122221 11111    24779


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ++||++|.|++++++.+.+.+.+.
T Consensus       600 ~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        600 NLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999998887653

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=1e-19  Score=156.90  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch----------hhhc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTAY   84 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~~   84 (217)
                      .++|+++|.+|+|||||+|+|.+........++.+.+.....+..++  ..+.+||+||...+...          ...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            47899999999999999999998766555556666666555555544  68999999998776431          1223


Q ss_pred             c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      +  ..+|++++|+|+++.+..   ..|...+.+.   +.|+++|+||+|+.+. .. ...+.+.+.+..+++++++|+++
T Consensus        81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~---giPvIvVlNK~Dl~~~-~~-i~id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL---GIPCIVALNMLDIAEK-QN-IRIDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh---HHHHHHHHHc---CCCEEEEEEchhhhhc-cC-cHHHHHHHHHHhCCCEEEEEeec
Confidence            2  479999999999886532   2344444443   6899999999998542 22 23456777888899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |+|++++++.+.+..
T Consensus       153 g~GIdeL~~~I~~~~  167 (772)
T PRK09554        153 GRGIEALKLAIDRHQ  167 (772)
T ss_pred             CCCHHHHHHHHHHhh
Confidence            999999998887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=1.4e-19  Score=126.84  Aligned_cols=155  Identities=23%  Similarity=0.342  Sum_probs=118.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC--------CCC----cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF--------TTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      -...||+|+|+.++||||+++.+.....        ...    ...|+.+++.....  ++. ..+++++||||++++.+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~--~~~-~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL--DED-TGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE--cCc-ceEEEecCCCcHHHHHH
Confidence            3457999999999999999999988653        111    12344444433332  222 48999999999999999


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEE
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFET  158 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~  158 (217)
                      |..+.+.+.++|+++|.+.+..+ +....++.+....+  +|++|++||.||.+   ..+.+.+.++....  ..+.+..
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~NK~DL~~---a~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAINKQDLFD---ALPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEeeccccCC---CCCHHHHHHHHHhccCCCceeee
Confidence            99999999999999999999887 55555555555432  89999999999965   34556666665544  7899999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (217)
                      +|.++++..+.++.+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988877654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.84  E-value=1.3e-20  Score=125.86  Aligned_cols=160  Identities=23%  Similarity=0.353  Sum_probs=119.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+++|..++|||||+..|.+.... ...+|.+  +....+..++. +.+++||.+|+...+..|..||.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~G--Fn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNG--FNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChh-hccccCC--cceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceEE
Confidence            55699999999999999999999986543 2345544  55566666654 79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH--HHHhCCeEEEEcCCCCCCHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRAVPTSKGQAL--ADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~-~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ||+|.+|...|+++..-+.++. ...-..+|+.|..||.|+..............+  .+...+.+-+||+..++|+..-
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            9999999888887777555443 333346999999999997442221111111111  2223378889999999999988


Q ss_pred             HHHHHHH
Q 027918          170 FFSIARD  176 (217)
Q Consensus       170 ~~~l~~~  176 (217)
                      .+|+...
T Consensus       171 ~~wv~sn  177 (185)
T KOG0074|consen  171 SDWVQSN  177 (185)
T ss_pred             chhhhcC
Confidence            8887653

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.84  E-value=4.6e-19  Score=133.85  Aligned_cols=151  Identities=22%  Similarity=0.196  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGAM   89 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d   89 (217)
                      +|+++|++|+|||||+++|.+........+..+.+.....+.+++  ..+++||+||.....       ......++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999998764333334444455555566666  689999999975432       12345788999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHH-----------------------------------------HHHHh-----------
Q 027918           90 GILLVYDVTDES-SFNNIRNWIR-----------------------------------------NIEQH-----------  116 (217)
Q Consensus        90 ~~i~v~d~~~~~-s~~~~~~~~~-----------------------------------------~l~~~-----------  116 (217)
                      ++++|+|+++++ ....+...+.                                         .+..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998754 2222222211                                         01111           


Q ss_pred             -----------c--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          117 -----------A--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       117 -----------~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                                 .  ....|+++|+||+|+..      .++...++..  ..++++||++|.|++++++.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       0  11368999999999843      3444444443  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.8e-19  Score=143.48  Aligned_cols=154  Identities=23%  Similarity=0.218  Sum_probs=117.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY   84 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   84 (217)
                      .-++|+++|.||+|||||+|.|++.... .+..+++|.++-...+.++|  +.+.++||+|..+.....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3489999999999999999999998765 78899999999999999999  899999999977544332        336


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      +.++|.+++|+|.+.+.+-.+... +.    ....+.|+++|.||.|+......      ..+....+.+++.+|+++|+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t~~  362 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKTGE  362 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecCcc
Confidence            688999999999998632222221 11    23346899999999999653221      11122233578999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIKQR  180 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (217)
                      |++.+.+.|.+.+...
T Consensus       363 Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         363 GLDALREAIKQLFGKG  378 (454)
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999988887665

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6.6e-21  Score=127.66  Aligned_cols=159  Identities=22%  Similarity=0.389  Sum_probs=115.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +...+|+++|..|+|||+++.++.-..... ..|+.+  +....+...+  .++++||.+|+-..+..|+.||.+.+++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvt-tkPtig--fnve~v~yKN--Lk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVT-TKPTIG--FNVETVPYKN--LKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccc-cCCCCC--cCcccccccc--ccceeeEccCcccccHHHHHHhcccceEE
Confidence            366899999999999999999887655443 344444  3334444544  89999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i  166 (217)
                      ||+|.+|.+.+......+ ..+....-.+..+++++||.|.+..   ....+....     .+..-+.++.+||.+|+|+
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gl  167 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGL  167 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh---hhHHHHHHHhChHHHhhheeEEEeeccccccCC
Confidence            999999987665555433 3332221124667888999997542   111211111     1222378999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      ++.++||.+.+.+
T Consensus       168 d~~~DWL~~~l~~  180 (182)
T KOG0072|consen  168 DPAMDWLQRPLKS  180 (182)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999988754

>PRK10218 GTP-binding protein; Provisional

Probab=99.83  E-value=2.9e-19  Score=150.33  Aligned_cols=161  Identities=17%  Similarity=0.203  Sum_probs=111.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc--CCCCCCc------------ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSF------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT   79 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   79 (217)
                      ..-+|+|+|..++|||||+++|+.  +.+....            ....+..+......+......+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999986  2222211            12223334333333333448999999999999999


Q ss_pred             hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hC
Q 027918           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YG  152 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~  152 (217)
                      .+..+++.+|++++|+|+.+..... ...++..+..   .++|+++|+||+|+.........+++..+...       ..
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~  159 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD  159 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence            9999999999999999998754322 2333333333   26899999999998654333333334443322       34


Q ss_pred             CeEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 027918          153 IKFFETSAKTNL----------NVEQVFFSIARDIK  178 (217)
Q Consensus       153 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (217)
                      ++++.+||.+|.          ++..+++.|++.+.
T Consensus       160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            789999999997          57888887777664

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=1.1e-19  Score=148.89  Aligned_cols=155  Identities=21%  Similarity=0.134  Sum_probs=103.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCcccceeeeEEEEEEEEC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELD   60 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   60 (217)
                      ....++|+++|.+++|||||+++|+...-.                               ....++.+.+.....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            356799999999999999999999843211                               1123455555555555555


Q ss_pred             CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-  138 (217)
Q Consensus        61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-  138 (217)
                      +  ..+.||||||++.|.......+..+|++++|+|+++...+.. ...++..+... . ..|+++++||+|+...... 
T Consensus        83 ~--~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~-~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         83 K--YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-G-INQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             C--eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-C-CCeEEEEEEccccccccHHH
Confidence            4  789999999998877655566789999999999987211111 11222222222 1 2468999999998642111 


Q ss_pred             --cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918          139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~  170 (217)
                        ...+++..+....+     ++++++||++|.|+++..
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              12234455555444     579999999999998754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=1.1e-19  Score=148.85  Aligned_cols=154  Identities=19%  Similarity=0.102  Sum_probs=105.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCC-----------------------------CCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFT-----------------------------TSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|..++|||||+.+|+..  ...                             .....+.+.+.....+..++
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            45689999999999999999999852  111                             11233555556555555555


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHH--HHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR--NIEQHASDNVNKVLVGNKADMDESKRA-  138 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~--~l~~~~~~~~pvivv~nK~Dl~~~~~~-  138 (217)
                        +.+.|||+||++.|.......+..+|++++|+|++++++.. ...+..  .+..... ..|+++|+||+|+.+.... 
T Consensus        85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~-~~~iIVviNK~Dl~~~~~~~  160 (426)
T TIGR00483        85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLG-INQLIVAINKMDSVNYDEEE  160 (426)
T ss_pred             --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcC-CCeEEEEEEChhccCccHHH
Confidence              78999999999988766666778999999999999875321 111111  1222222 3578999999998542111 


Q ss_pred             --cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918          139 --VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       139 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~  170 (217)
                        ....++..++...+     ++++++||++|.|+.+.+
T Consensus       161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12345556666554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.83  E-value=2.8e-19  Score=150.56  Aligned_cols=156  Identities=20%  Similarity=0.259  Sum_probs=111.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC--CCCCC--------------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG--SFTTS--------------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      +|+|+|..++|||||+++|+..  .+...              .....++......+.+++  .+++||||||+..|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            7999999999999999999862  22111              122333333444455555  79999999999999988


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-------HhCC
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-------EYGI  153 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~  153 (217)
                      +..+++.+|++++|+|+.+.. ......|+..+...   ++|+++|+||+|+.+.......+++..+..       ...+
T Consensus        81 v~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            999999999999999998743 23344555555543   689999999999865322222233333332       2346


Q ss_pred             eEEEEcCCCCC----------CHHHHHHHHHHHHH
Q 027918          154 KFFETSAKTNL----------NVEQVFFSIARDIK  178 (217)
Q Consensus       154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~  178 (217)
                      +++.+||++|.          |+..+|+.|.+.+.
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            89999999995          79999998888764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.82  E-value=4.4e-19  Score=148.86  Aligned_cols=156  Identities=18%  Similarity=0.166  Sum_probs=102.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------------CeEEEEEEeeCCCcccccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQERFRT   79 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~~~~   79 (217)
                      +-|+|+|.+++|||||+++|.+..+......+.+.+.....+..+                .....+.||||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            579999999999999999999876653322222211111111111                0012389999999999999


Q ss_pred             hhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-----------ChHHH-
Q 027918           80 ITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-----------PTSKG-  144 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-----------~~~~~-  144 (217)
                      ++..+++.+|++++|+|+++   +.+++.+.    .+..   .+.|+++++||+|+.......           ..+.. 
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            99999999999999999987   34443332    2222   268999999999985311000           00000 


Q ss_pred             -----------HHHHH------------Hh--CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          145 -----------QALAD------------EY--GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       145 -----------~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                                 ..+..            ..  .++++++||++|+|+++++++|.....
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                       01110            11  268999999999999999998865443

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.82  E-value=2.1e-19  Score=123.22  Aligned_cols=135  Identities=24%  Similarity=0.316  Sum_probs=97.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc----cccchhhhcccCCcEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE----RFRTITTAYYRGAMGIL   92 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----~~~~~~~~~~~~~d~~i   92 (217)
                      ||+++|+.|||||||+++|.+...  .+..|..+.+.       +     .++||||..    .+.........++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999998654  33344332221       1     237999943    33333444556999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++.|++++.+.     +-..+...+  +.|+|-|+||+|+..  .....+.++.+.+..|+ .+|.+|+.+|+|+++|.+
T Consensus        69 ll~dat~~~~~-----~pP~fa~~f--~~pvIGVITK~Dl~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~  139 (143)
T PF10662_consen   69 LLQDATEPRSV-----FPPGFASMF--NKPVIGVITKIDLPS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD  139 (143)
T ss_pred             EEecCCCCCcc-----CCchhhccc--CCCEEEEEECccCcc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence            99999986542     111223333  579999999999863  23355667777788786 689999999999999999


Q ss_pred             HHH
Q 027918          172 SIA  174 (217)
Q Consensus       172 ~l~  174 (217)
                      +|.
T Consensus       140 ~L~  142 (143)
T PF10662_consen  140 YLE  142 (143)
T ss_pred             HHh
Confidence            874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.82  E-value=2.8e-19  Score=133.11  Aligned_cols=148  Identities=23%  Similarity=0.141  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------------------cccceeeeEEEEEEEECCeEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------------------FITTIGIDFKIRTIELDGKRIK   65 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      +|+|+|.+|+|||||+++|+...-...                               .....+.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            689999999999999999975321111                               113334444444444554  58


Q ss_pred             EEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc---cChH
Q 027918           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA---VPTS  142 (217)
Q Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~---~~~~  142 (217)
                      +.||||||+..+.......++.+|++++|+|++++..-... .....+... . ..++|+|+||+|+......   ....
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~~-~-~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSLL-G-IRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHHc-C-CCcEEEEEEchhcccCCHHHHHHHHH
Confidence            89999999988776666778899999999999875322221 222222222 1 2457889999998542211   1123


Q ss_pred             HHHHHHHHhC---CeEEEEcCCCCCCHHHH
Q 027918          143 KGQALADEYG---IKFFETSAKTNLNVEQV  169 (217)
Q Consensus       143 ~~~~~~~~~~---~~~~~~Sa~~~~~i~~l  169 (217)
                      +.+.+....+   .+++++||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3444455555   45899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=6.7e-19  Score=126.47  Aligned_cols=151  Identities=18%  Similarity=0.227  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccchhhhccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRTITTAYYR   86 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~~~~   86 (217)
                      +|+++|.+|+|||||++.+.+........++.+.......+..++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            489999999999999999996444433333333333333333333   899999999543          2333333443


Q ss_pred             ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-ccChHHHHHHHH--HhCCeEEEE
Q 027918           87 ---GAMGILLVYDVTDESSF--NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AVPTSKGQALAD--EYGIKFFET  158 (217)
Q Consensus        87 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~~~  158 (217)
                         ..+++++++|.....+.  ..+..|+   ...   +.|+++|+||+|+..... ............  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l---~~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWL---EEL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHH---HHc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               45788899998765322  2233333   222   479999999999843211 111122222222  234689999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (217)
                      |++++.++.+++++|.+.
T Consensus       152 Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         152 SSLKGQGIDELRALIEKW  169 (170)
T ss_pred             ecCCCCCHHHHHHHHHHh
Confidence            999999999999998765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.81  E-value=2.5e-18  Score=130.07  Aligned_cols=112  Identities=18%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--------C----------CcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT--------T----------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      +|+++|..|+|||||+++|+...-.        .          ......+.......+..++  .++.+|||||+..+.
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~   78 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI   78 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence            5899999999999999999763110        0          0111222333334444555  789999999999998


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..+..+++.+|++++|+|+.+.... ....++..+...   +.|+++|+||+|+..
T Consensus        79 ~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~  130 (237)
T cd04168          79 AEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG  130 (237)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence            8888899999999999999886443 334455545443   689999999999864

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=4.2e-18  Score=135.34  Aligned_cols=160  Identities=28%  Similarity=0.226  Sum_probs=115.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccc-hh
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRT-IT   81 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~-~~   81 (217)
                      ..++|+|+|.||+|||||+|+|++..-. ....++++.+.-...+..++  -.+.++||.|..+          |.. -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            5699999999999999999999987644 55667777777777777777  6899999999442          222 12


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHHH---hC-CeEE
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALADE---YG-IKFF  156 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~~---~~-~~~~  156 (217)
                      ...+..++++++|+|+..+-+-.+.+ ....+.+.   +.+++||+||+|+.+. .....++.+ .+.+.   .+ .+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~---g~~~vIvvNKWDl~~~-~~~~~~~~k~~i~~~l~~l~~a~i~  329 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA---GRGIVIVVNKWDLVEE-DEATMEEFKKKLRRKLPFLDFAPIV  329 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc---CCCeEEEEEccccCCc-hhhHHHHHHHHHHHHhccccCCeEE
Confidence            33567899999999998876543332 23333333   6899999999998653 212222221 22222   22 5899


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ++||.+|.++.++|+.+...+...
T Consensus       330 ~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         330 FISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             EEEecCCCChHHHHHHHHHHHHHh
Confidence            999999999999999988777654

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=9.1e-19  Score=142.42  Aligned_cols=163  Identities=17%  Similarity=0.159  Sum_probs=104.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEE--------------EE----CC------eEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTI--------------EL----DG------KRIKL   66 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~--------------~~----~~------~~~~~   66 (217)
                      ..++|+++|..++|||||++.|.+.....   ......+.......+              ..    ++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            46899999999999999999997532211   111111111110000              00    11      13579


Q ss_pred             EEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHH
Q 027918           67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQ  145 (217)
Q Consensus        67 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~  145 (217)
                      .+||+||++.|...+......+|++++|+|++++.........+..+....  ..|+++|+||+|+.+.... ...+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            999999999998888888888999999999986431111222222232221  2468999999998642111 1123334


Q ss_pred             HHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          146 ALADEY---GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       146 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      .+....   +++++++||++|.|+++++++|...+.
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            444332   578999999999999999999887653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.80  E-value=5e-19  Score=132.74  Aligned_cols=146  Identities=17%  Similarity=0.097  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEEECCeEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDGKRIK   65 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (217)
                      +|+++|..++|||||+.+|+...-                               ........+.+.....+..++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            589999999999999999864210                               011123334444445555555  78


Q ss_pred             EEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--
Q 027918           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--  136 (217)
Q Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~--  136 (217)
                      +.+|||||+..+...+...++.+|++++|+|+++..       .......| ...... . ..|+++|+||+|+....  
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~iiivvNK~Dl~~~~~~  155 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTL-G-VKQLIVAVNKMDDVTVNWS  155 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHHc-C-CCeEEEEEEcccccccccc
Confidence            999999999887776777778899999999998742       11122222 222222 1 36899999999986321  


Q ss_pred             Cc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHH
Q 027918          137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVE  167 (217)
Q Consensus       137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  167 (217)
                      ..   ...+++..+....+     ++++++||++|.|++
T Consensus       156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11   11222333333432     679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG2262 HflX GTPases [General function prediction only]

Probab=99.80  E-value=2.3e-18  Score=134.90  Aligned_cols=165  Identities=21%  Similarity=0.174  Sum_probs=125.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccc
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRT   79 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~   79 (217)
                      +......+.|.++|.+|||||||+|.|.+........-+.+.+.....+.+.+. ..+.+.||-|.-.         |++
T Consensus       186 ~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g-~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         186 KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG-RKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC-ceEEEecCccCcccCChHHHHHHHH
Confidence            334456789999999999999999999988777666677778888888888643 4889999999432         222


Q ss_pred             hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918           80 ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      . ......+|++++|+|++++...+.+....+.+........|+|+|.||+|+..+..     .......... ..+.+|
T Consensus       265 T-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iS  337 (411)
T COG2262         265 T-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFIS  337 (411)
T ss_pred             H-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEE
Confidence            2 22346899999999999998888888877778777666799999999999754222     1111111112 589999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Q 027918          160 AKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      |++|.|++.+++.|.+.+....
T Consensus       338 A~~~~gl~~L~~~i~~~l~~~~  359 (411)
T COG2262         338 AKTGEGLDLLRERIIELLSGLR  359 (411)
T ss_pred             eccCcCHHHHHHHHHHHhhhcc
Confidence            9999999999999998887543

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.80  E-value=4.5e-18  Score=124.93  Aligned_cols=147  Identities=20%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      .++|+++|..++|||||+++|++...                .....+..+.+.....+..+  ...+.|+||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~--~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA--NRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC--CeEEEEEECcCHHHHH
Confidence            48999999999999999999976310                01112333333333333333  3688999999998887


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC---
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEYG---  152 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~---  152 (217)
                      ......+..+|++++|+|+...-... ....+..+...   +.| +|+++||+|+......  ...+++..+....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            77777788999999999998653222 22233334433   566 7889999998532111  11233444444443   


Q ss_pred             --CeEEEEcCCCCCCHH
Q 027918          153 --IKFFETSAKTNLNVE  167 (217)
Q Consensus       153 --~~~~~~Sa~~~~~i~  167 (217)
                        ++++++||.+|.++.
T Consensus       156 ~~v~iipiSa~~g~n~~  172 (195)
T cd01884         156 DNTPIVRGSALKALEGD  172 (195)
T ss_pred             cCCeEEEeeCccccCCC
Confidence              689999999998853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=2.6e-18  Score=130.03  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=118.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----h---hhhcccCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----I---TTAYYRGAM   89 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~d   89 (217)
                      .|.+||.||||||||++.|...+-.......+|.....-.+.+++.. .+++-|.||.-+-..    +   ....+..+.
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            68899999999999999999887666666777777777777776643 599999999543211    2   233456799


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918           90 GILLVYDVTDE---SSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (217)
Q Consensus        90 ~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (217)
                      .++||+|++..   ..++.+..+..++..+..  .+.|.+||+||+|+++.    ....++++++...- .++++||+.+
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNLLSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHHHHHHHHHcCCCcEEEeeeccc
Confidence            99999999988   777887777777766543  36899999999998532    22335677777664 5999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARD  176 (217)
Q Consensus       164 ~~i~~l~~~l~~~  176 (217)
                      +++.++++.|.+.
T Consensus       353 egl~~ll~~lr~~  365 (366)
T KOG1489|consen  353 EGLEELLNGLREL  365 (366)
T ss_pred             cchHHHHHHHhhc
Confidence            9999999888754

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.79  E-value=1.5e-18  Score=141.16  Aligned_cols=163  Identities=16%  Similarity=0.183  Sum_probs=102.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEEE------------------C--C----eEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIEL------------------D--G----KRI   64 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~----~~~   64 (217)
                      ....++|+++|..++|||||+..|.+....   .......+.........+                  +  +    ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            456699999999999999999999653211   111122222221110000                  0  0    125


Q ss_pred             EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027918           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS  142 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~  142 (217)
                      .+.||||||+..|..........+|++++|+|++++. ....... +..+....  ..|+++|+||+|+.+.... ...+
T Consensus        86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDIIG--IKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHHcC--CCcEEEEEEeeccccchhHHHHHH
Confidence            7999999999887766655666789999999998643 1121121 22222221  2468999999998652211 1123


Q ss_pred             HHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          143 KGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       143 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ++..++...   +.+++++||++|.|++++++.|.+.+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            344444332   47899999999999999999988765

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=4.8e-18  Score=143.09  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=101.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeE--EEEEEEE----CCeEE----------EEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDF--KIRTIEL----DGKRI----------KLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~----------~~~l~Dt~G~~~   76 (217)
                      .+.+.|+++|.+++|||||+++|.+...........+.+.  +......    .+...          .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            3456899999999999999999987654322222111111  1111110    01111          278999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-C------------
Q 027918           77 FRTITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-P------------  140 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~------------  140 (217)
                      |..++...++.+|++++|+|+++   +.+++.+..    +..   .+.|+++++||+|+....... .            
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99988888899999999999987   445444332    222   268999999999984211000 0            


Q ss_pred             --hH-------HHHHHHHH---------------hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          141 --TS-------KGQALADE---------------YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       141 --~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                        .+       +...+...               ..++++++||.+|.|++++++.+....
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence              00       00011111               126799999999999999998876544

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.79  E-value=5.7e-18  Score=143.33  Aligned_cols=154  Identities=20%  Similarity=0.186  Sum_probs=106.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      -|.++|..++|||||+++|.+..   +.+....+.+++.....+...+. ..+.|||+||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g-~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG-RVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC-cEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            58899999999999999998633   33334445555554444433222 368999999999887767777889999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC-ccChHHHHHHHHHhC---CeEEEEcCCCCCC
Q 027918           94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR-AVPTSKGQALADEYG---IKFFETSAKTNLN  165 (217)
Q Consensus        94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~---~~~~~~Sa~~~~~  165 (217)
                      |+|+++.   .+.+.+    ..+...   +.| ++||+||+|+.+... ....+++..+....+   .+++++||++|.|
T Consensus        81 VVda~eg~~~qT~ehl----~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         81 VVACDDGVMAQTREHL----AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEECCCCCcHHHHHHH----HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999874   333222    223222   345 579999999854211 111234444544443   6899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIK  178 (217)
Q Consensus       166 i~~l~~~l~~~~~  178 (217)
                      ++++++.|.+...
T Consensus       154 I~~L~~~L~~~~~  166 (614)
T PRK10512        154 IDALREHLLQLPE  166 (614)
T ss_pred             CHHHHHHHHHhhc
Confidence            9999999876543

>cd04167 Snu114p Snu114p subfamily

Probab=99.77  E-value=2.2e-17  Score=123.44  Aligned_cols=113  Identities=27%  Similarity=0.293  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS-------------------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   74 (217)
                      +|+|+|..|+|||||+++|+.......                   .....+.......+.+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987433211                   1111122222222222   345689999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      ..+......++..+|++++|+|+.+..+... ..|+..+..   .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987665432 334444332   258999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.77  E-value=1.7e-17  Score=125.01  Aligned_cols=168  Identities=18%  Similarity=0.173  Sum_probs=110.6

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-----------
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----------   77 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------   77 (217)
                      .++..+-++|+|+|.||+|||||.|.+.+.++........++....-.+-..+ ..++.|+||||...-           
T Consensus        66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~-eTQlvf~DTPGlvs~~~~r~~~l~~s  144 (379)
T KOG1423|consen   66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSG-ETQLVFYDTPGLVSKKMHRRHHLMMS  144 (379)
T ss_pred             chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecC-ceEEEEecCCcccccchhhhHHHHHH
Confidence            34456779999999999999999999999998876666665555444433333 379999999993321           


Q ss_pred             -cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC------------ccC---h
Q 027918           78 -RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR------------AVP---T  141 (217)
Q Consensus        78 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~------------~~~---~  141 (217)
                       -......+..||.+++|+|+++....- -...+..+..+.  ++|-++|.||.|.....+            ...   .
T Consensus       145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l-~p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl  221 (379)
T KOG1423|consen  145 VLQNPRDAAQNADCVVVVVDASATRTPL-HPRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL  221 (379)
T ss_pred             hhhCHHHHHhhCCEEEEEEeccCCcCcc-ChHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence             011234567899999999999743211 112344444443  578899999999643211            111   1


Q ss_pred             HHHHHHHHH---------hCC----eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          142 SKGQALADE---------YGI----KFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       142 ~~~~~~~~~---------~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      +..+.|...         .+|    .+|.+||..|+|++++.++|.....+.
T Consensus       222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            111122111         122    389999999999999999988766544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.76  E-value=1.8e-18  Score=140.08  Aligned_cols=163  Identities=26%  Similarity=0.369  Sum_probs=121.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+++|+.|+||||||-.|....+.+...+-...-.-...+..+.  +...|+|++.....+.....-++++|++++
T Consensus         8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            348999999999999999999999888765444332111122233333  679999998766655666778899999999


Q ss_pred             EEeCCChhhHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-C-eEEEEcCCCCCCHHH
Q 027918           94 VYDVTDESSFNNIRN-WIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-I-KFFETSAKTNLNVEQ  168 (217)
Q Consensus        94 v~d~~~~~s~~~~~~-~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~-~~~~~Sa~~~~~i~~  168 (217)
                      +|+.+++.+++.+.. |+..+++..+  .+.|||+|+||+|+.+....-.......+...+. + ..++|||++-.++.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            999999999998877 9999988873  4799999999999865333311122333333333 3 578999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          169 VFFSIARDIK  178 (217)
Q Consensus       169 l~~~l~~~~~  178 (217)
                      +|.+..+++.
T Consensus       166 ~fYyaqKaVi  175 (625)
T KOG1707|consen  166 LFYYAQKAVI  175 (625)
T ss_pred             hhhhhhheee
Confidence            9988777664

>PRK12736 elongation factor Tu; Reviewed

Probab=99.76  E-value=2.8e-17  Score=133.26  Aligned_cols=159  Identities=19%  Similarity=0.175  Sum_probs=101.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      ...++|+++|..++|||||+++|++...                ........+.+...  ..+......+.|+||||+.+
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~--~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAH--VEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEe--eEecCCCcEEEEEECCCHHH
Confidence            4569999999999999999999986210                01113333444433  33333336789999999998


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEYG-  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-  152 (217)
                      |.......+..+|++++|+|+.......+ ...+..+...   +.| +|+++||+|+.+.....  ..+++..+....+ 
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~  163 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence            87766666788999999999986432222 2223333333   567 67889999986422111  1234455554444 


Q ss_pred             ----CeEEEEcCCCCC--------CHHHHHHHHHHHH
Q 027918          153 ----IKFFETSAKTNL--------NVEQVFFSIARDI  177 (217)
Q Consensus       153 ----~~~~~~Sa~~~~--------~i~~l~~~l~~~~  177 (217)
                          ++++++||.+|.        ++.++++.|.+.+
T Consensus       164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence                589999999983        4555555555443

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=3e-17  Score=136.08  Aligned_cols=154  Identities=16%  Similarity=0.200  Sum_probs=119.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--cC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--RG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~   87 (217)
                      ++|+++|.||+|||||+|+|.+........+++|.+.....+...+.  .++++|.||-.....      ..++++  .+
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            56999999999999999999999888888999999999999888884  699999999654332      223333  35


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      .|+++-|+|+++-+.-  +--.++ +..   -+.|++++.|++|...  +.-..-+.+.+.+..++|+++++|++|.|++
T Consensus        82 ~D~ivnVvDAtnLeRn--LyltlQ-LlE---~g~p~ilaLNm~D~A~--~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          82 PDLIVNVVDATNLERN--LYLTLQ-LLE---LGIPMILALNMIDEAK--KRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCEEEEEcccchHHHH--HHHHHH-HHH---cCCCeEEEeccHhhHH--hcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            7999999999886532  221222 222   2789999999999743  3333455667888999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          168 QVFFSIARDIKQ  179 (217)
Q Consensus       168 ~l~~~l~~~~~~  179 (217)
                      ++++.+.+....
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999888765543

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.75  E-value=8.4e-17  Score=120.67  Aligned_cols=152  Identities=17%  Similarity=0.173  Sum_probs=94.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCccc-----------------------ceeeeEE---------------EEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-----------------------TIGIDFK---------------IRTIE   58 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~-----------------------~~~~~~~---------------~~~~~   58 (217)
                      ||+++|+.++|||||+++|..+.+......                       ..+.+..               ...+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            589999999999999999987544321100                       0000000               01112


Q ss_pred             ECCeEEEEEEeeCCCcccccchhhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           59 LDGKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      .++  ..+.++|+||+..|.......+.  .+|++++|+|+..+.. .....++..+...   ++|+++|+||+|+....
T Consensus        81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHH
Confidence            223  57999999999888665444443  6899999999876543 2223333334333   68999999999975321


Q ss_pred             C-ccChHHHHHHHHH--------------------------hCCeEEEEcCCCCCCHHHHHHHHH
Q 027918          137 R-AVPTSKGQALADE--------------------------YGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       137 ~-~~~~~~~~~~~~~--------------------------~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      . .....++..+...                          ...++|.+|+.+|.|++++...|.
T Consensus       155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1 1112222222221                          124899999999999999987764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=5.1e-17  Score=131.83  Aligned_cols=158  Identities=17%  Similarity=0.137  Sum_probs=101.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC-------CC---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------SF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~-------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      .+.++|+++|.+++|||||+++|++.       .+         ........+.+.....+..++  ..+.|+||||+..
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence            56699999999999999999999862       10         011133334443333333333  5789999999988


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCC--ccChHHHHHHHHHhC-
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKR--AVPTSKGQALADEYG-  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~-  152 (217)
                      |.......+..+|++++|+|+.+..... ....+..+...   ++|.+ +++||+|+.+...  .....++..+...++ 
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            8766667778999999999998743222 22333333332   57755 5799999864211  111234455555543 


Q ss_pred             ----CeEEEEcCCCCC----------CHHHHHHHHHHH
Q 027918          153 ----IKFFETSAKTNL----------NVEQVFFSIARD  176 (217)
Q Consensus       153 ----~~~~~~Sa~~~~----------~i~~l~~~l~~~  176 (217)
                          ++++++|+.+|.          ++..+++.|.+.
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence                689999999984          455666665544

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=7.3e-17  Score=115.65  Aligned_cols=160  Identities=20%  Similarity=0.226  Sum_probs=104.3

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------cc
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QE   75 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~   75 (217)
                      .+-+.+..+.|+++|.+|+|||||||+|+++.  ...+..|+.|  .....+.+++   .+.++|.||          .+
T Consensus        17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrT--q~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e   91 (200)
T COG0218          17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRT--QLINFFEVDD---ELRLVDLPGYGYAKVPKEVKE   91 (200)
T ss_pred             hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCcc--ceeEEEEecC---cEEEEeCCCcccccCCHHHHH
Confidence            34455567899999999999999999999976  3344455544  3444455555   489999999          22


Q ss_pred             cccchhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-
Q 027918           76 RFRTITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-  151 (217)
Q Consensus        76 ~~~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-  151 (217)
                      ....+...|+.   +..++++++|+..+....+. +.++.+...   ++|++||+||+|.....  .........+... 
T Consensus        92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~~~--~~~k~l~~v~~~l~  165 (200)
T COG0218          92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLKKS--ERNKQLNKVAEELK  165 (200)
T ss_pred             HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCChh--HHHHHHHHHHHHhc
Confidence            23333444553   36778889999776543332 233333433   79999999999975421  1111222333222 


Q ss_pred             ---CCe--EEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          152 ---GIK--FFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       152 ---~~~--~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                         .+.  ++..|+..+.|++++...|.+.+.
T Consensus       166 ~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         166 KPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence               232  788999999999999888877664

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=1.3e-16  Score=117.82  Aligned_cols=161  Identities=15%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee-eE--EEEEEEECCeEEEEEEeeCCCcccccchh-----hhccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI-DF--KIRTIELDGKRIKLQIWDTAGQERFRTIT-----TAYYR   86 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~~~~~   86 (217)
                      .++|+|+|.+|+|||||+|.|.+...........+. ..  ....+.... ...+.+||+||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            379999999999999999999985543221111110 00  101111111 2378999999965432222     22356


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc----------cChHHHHHHHH----HhC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA----------VPTSKGQALAD----EYG  152 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~----------~~~~~~~~~~~----~~~  152 (217)
                      .+|+++++.+. ...  ..-..|+..+...   +.|+++|+||+|+......          ...+.....+.    ..+
T Consensus        80 ~~d~~l~v~~~-~~~--~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST-RFS--SNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC-CCC--HHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78988887432 111  2223455555554   5799999999998321111          11111111221    212


Q ss_pred             ---CeEEEEcCC--CCCCHHHHHHHHHHHHHHHhc
Q 027918          153 ---IKFFETSAK--TNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       153 ---~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~~  182 (217)
                         -++|.+|+.  .+.++..+.+.|+..+..++.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence               378999998  679999999999999887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.74  E-value=4.1e-17  Score=121.87  Aligned_cols=165  Identities=19%  Similarity=0.283  Sum_probs=106.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----hhhhcccCCcE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----ITTAYYRGAMG   90 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~d~   90 (217)
                      ||+++|+.+|||||..+.++++..+ ++..-..+.+.....+.+.+. +.+++||+||+..+..     .....++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            7999999999999999999976543 333333445555555554433 6999999999875533     35678899999


Q ss_pred             EEEEEeCCChhhHHHHHH---HHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccC----hHHHHHHHHHhC---CeEEEEc
Q 027918           91 ILLVYDVTDESSFNNIRN---WIRNIEQHASDNVNKVLVGNKADMDESK-RAVP----TSKGQALADEYG---IKFFETS  159 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~----~~~~~~~~~~~~---~~~~~~S  159 (217)
                      +|||+|+.+.+..+.+..   .+..+.+..+ +..+.|++.|+|+..+. +...    .+.+.+.+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            999999985444444444   4444444444 68899999999985321 1111    222333344445   7899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhccc
Q 027918          160 AKTNLNVEQVFFSIARDIKQRLADT  184 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~~  184 (217)
                      ..+ +.+-+.+..+++.++++.+.-
T Consensus       159 I~D-~Sly~A~S~Ivq~LiP~~~~l  182 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQKLIPNLSTL  182 (232)
T ss_dssp             TTS-THHHHHHHHHHHTTSTTHCCC
T ss_pred             CcC-cHHHHHHHHHHHHHcccHHHH
Confidence            998 588999999999888766543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=3.4e-17  Score=131.84  Aligned_cols=168  Identities=23%  Similarity=0.237  Sum_probs=127.6

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCc
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~   74 (217)
                      +.++.-++.|+-.-.-|||||..+|+.-               ........+.++.-....+.+ ++....++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            4466778999999999999999998651               112224455555555444444 345589999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK  154 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      ..|+....+.+..++++++|+|++..--..++..++..+..    +..+|.|+||+|++.+..+.......+.......+
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~  211 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE  211 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999987666666665555544    78899999999998754444445555555555568


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          155 FFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      .+.+||++|.|+.++++.|++.+.+..-
T Consensus       212 ~i~vSAK~G~~v~~lL~AII~rVPpP~~  239 (650)
T KOG0462|consen  212 VIYVSAKTGLNVEELLEAIIRRVPPPKG  239 (650)
T ss_pred             eEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence            9999999999999999999998865443

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=7.9e-17  Score=130.75  Aligned_cols=146  Identities=19%  Similarity=0.153  Sum_probs=94.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC-------C---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS-------F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      .+.++|+++|..++|||||+++|++..       +         ........+.+...  +.+......+.||||||++.
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~--~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAH--VEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEE--EEEcCCCEEEEEEECCchHH
Confidence            567999999999999999999997420       0         11122344444433  33433336899999999998


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRAV--PTSKGQALADEYG-  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-  152 (217)
                      |..........+|++++|+|+......... ..+..+...   +.|.+ +++||+|+.+.....  ..++++.++...+ 
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~  163 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF  163 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            876666666788999999999874322222 222233332   56655 689999986422111  1234556666554 


Q ss_pred             ----CeEEEEcCCCCC
Q 027918          153 ----IKFFETSAKTNL  164 (217)
Q Consensus       153 ----~~~~~~Sa~~~~  164 (217)
                          ++++++||.+|.
T Consensus       164 ~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       164 PGDDTPIIRGSALKAL  179 (394)
T ss_pred             CccCccEEECcccccc
Confidence                689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.3e-16  Score=121.64  Aligned_cols=157  Identities=19%  Similarity=0.193  Sum_probs=115.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-----ccch----hhhc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-----FRTI----TTAY   84 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~~~~----~~~~   84 (217)
                      ..+.|+|.|.||+|||||++.+..........|.++...+...+..++  ..++++||||.-.     .+..    ....
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            457899999999999999999999988888888888888877777766  6899999999321     1111    1112


Q ss_pred             ccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCC
Q 027918           85 YRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK  161 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (217)
                      -.-.++++|+||.+..  -+.+....++..+...+.  .|+++|+||+|+.+.   ...+++.......+ .....+++.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~---e~~~~~~~~~~~~~~~~~~~~~~~  319 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADE---EKLEEIEASVLEEGGEEPLKISAT  319 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccch---hHHHHHHHHHHhhccccccceeee
Confidence            2346889999998864  457777778888888875  799999999998542   12233333333333 457788898


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDI  177 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (217)
                      .+.+++.+-+.+....
T Consensus       320 ~~~~~d~~~~~v~~~a  335 (346)
T COG1084         320 KGCGLDKLREEVRKTA  335 (346)
T ss_pred             ehhhHHHHHHHHHHHh
Confidence            9999988887776654

>CHL00071 tufA elongation factor Tu

Probab=99.73  E-value=1.3e-16  Score=129.88  Aligned_cols=149  Identities=18%  Similarity=0.125  Sum_probs=97.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ....++|+++|.+++|||||+++|++...                .....++.+.+.....+..++  ..+.|+||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChH
Confidence            35569999999999999999999986411                111223444443333333333  578999999998


Q ss_pred             cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027918           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG  152 (217)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  152 (217)
                      .|.......+..+|++++|+|+.....- .....+..+...   +.| +|+++||+|+.+...  ....+++..+....+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            8877667777899999999999864322 222233333332   577 778899999864221  111234455555443


Q ss_pred             -----CeEEEEcCCCCCCH
Q 027918          153 -----IKFFETSAKTNLNV  166 (217)
Q Consensus       153 -----~~~~~~Sa~~~~~i  166 (217)
                           ++++++|+.+|.++
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        163 FPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCCcceEEEcchhhcccc
Confidence                 68999999998743

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=1.5e-16  Score=128.57  Aligned_cols=159  Identities=21%  Similarity=0.203  Sum_probs=118.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      .+=|+++|.-.-|||||+..+-...+.....-..+.++..+.+..+. ....++|+|||||+.|..+..+-..-+|++|+
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            46799999999999999999999888777777777788777777752 12489999999999999999998899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhC--CeEEEEcCCCCCCHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYG--IKFFETSAKTNLNVEQ  168 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~--~~~~~~Sa~~~~~i~~  168 (217)
                      |+++++.-...+..    .+......+.|++|++||+|.++........+.++.   ...++  ..++++||++|.|+++
T Consensus        85 VVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e  160 (509)
T COG0532          85 VVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE  160 (509)
T ss_pred             EEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence            99999854333222    233333448999999999998753222111111111   12222  5799999999999999


Q ss_pred             HHHHHHHHH
Q 027918          169 VFFSIARDI  177 (217)
Q Consensus       169 l~~~l~~~~  177 (217)
                      |++.+.-..
T Consensus       161 LL~~ill~a  169 (509)
T COG0532         161 LLELILLLA  169 (509)
T ss_pred             HHHHHHHHH
Confidence            998866443

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=2.6e-16  Score=120.99  Aligned_cols=113  Identities=16%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCC----------------------cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTS----------------------FITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      -+|+|+|.+|+|||||+++|+...-...                      .....+.......+.+.+  .++++|||||
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~--~~i~liDTPG   80 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD--CVINLLDTPG   80 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC--EEEEEEECCC
Confidence            3799999999999999999975211000                      011122223333444444  7999999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +..|.......++.+|++|+|+|+++.... ....++.....   .++|+++++||+|+..
T Consensus        81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             chHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            998887777788999999999999875332 22333333332   2689999999999754

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.72  E-value=8.6e-17  Score=131.81  Aligned_cols=150  Identities=19%  Similarity=0.150  Sum_probs=101.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|..++|||||+.+|+...-                               ........+++.....+..+ 
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~-   83 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT-   83 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC-
Confidence            4568999999999999999998864110                               11122333444443333333 


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN-------NIRNWIRNIEQHASDNV-NKVLVGNKADMD  133 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~~-pvivv~nK~Dl~  133 (217)
                       ...++|+|+||+.+|.......+..+|++|+|+|+.+. .++       .....+..+...   ++ ++|+++||+|+.
T Consensus        84 -~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 -KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDAT  158 (447)
T ss_pred             -CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCC
Confidence             37899999999999998888889999999999999873 121       222222222222   56 468889999975


Q ss_pred             CCC-----CccChHHHHHHHHHhC-----CeEEEEcCCCCCCHHH
Q 027918          134 ESK-----RAVPTSKGQALADEYG-----IKFFETSAKTNLNVEQ  168 (217)
Q Consensus       134 ~~~-----~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (217)
                      +..     .....++++.++...+     ++++++||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            211     1112455666666665     6799999999999854

>cd01850 CDC_Septin CDC/Septin

Probab=99.72  E-value=1.1e-16  Score=123.71  Aligned_cols=144  Identities=19%  Similarity=0.254  Sum_probs=93.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----   79 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----   79 (217)
                      ..++|+|+|.+|+|||||+|+|++..+...          ..++.........+..++..+.+.||||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            358999999999999999999999876533          244445555666666778788999999999432210    


Q ss_pred             ----------------------hhhhccc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           80 ----------------------ITTAYYR--GAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        80 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                                            .....+.  .+|+++|+++.+... +... ...+..+.   . ..|+++|+||+|+..
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l~  157 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTLT  157 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcCC
Confidence                                  0112233  467777887766421 1111 22233332   2 589999999999743


Q ss_pred             C-CCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918          135 S-KRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus       135 ~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      . ........+.+.+..+++++|.....+
T Consensus       158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            1 222345556677778888888766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.72  E-value=1.2e-16  Score=122.87  Aligned_cols=112  Identities=20%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      +|+++|.+|+|||||+++|+...-                  ........+++.....+.+++  ..+.++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            589999999999999999974111                  011233444444555556665  789999999998888


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..+...++.+|++++|+|+.+.....+ ..++..+...   +.|+++++||+|+..
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~---~~p~ivviNK~D~~~  130 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY---NVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            888889999999999999987543222 2333333332   689999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.72  E-value=1.2e-16  Score=119.38  Aligned_cols=113  Identities=21%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC--C--------------CcccceeeeEEEEEEEEC--------CeEEEEEEeeCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTIELD--------GKRIKLQIWDTA   72 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~   72 (217)
                      +|+|+|..++|||||+.+|+...-.  .              ......++......+.+.        +....+.|||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6999999999999999999753211  0              011112222222223332        335889999999


Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      |+..|.......++.+|++++|+|+.++........| .....   .+.|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence            9999999899999999999999999887654432222 22222   368999999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.71  E-value=1.8e-16  Score=130.90  Aligned_cols=153  Identities=22%  Similarity=0.155  Sum_probs=96.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------------cccceeeeEEEEEEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTIE   58 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~   58 (217)
                      ....++|+|+|..++|||||+.+|+...-...                                 .....+++.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35569999999999999999999975321100                                 111223444444444


Q ss_pred             ECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA  138 (217)
Q Consensus        59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~  138 (217)
                      .++  ..+.|+||||+..|.......+..+|++++|+|+.......+...+ ..+....  ..|+|+++||+|+......
T Consensus       104 ~~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        104 TEK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             cCC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhH
Confidence            444  6899999999988866555567899999999999765321111111 1122221  2478999999998642211


Q ss_pred             cCh---HHHHHHHHHh----CCeEEEEcCCCCCCHHHH
Q 027918          139 VPT---SKGQALADEY----GIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       139 ~~~---~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l  169 (217)
                      ...   ++...+....    ..+++++||++|.|++++
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            111   2222333332    368999999999999865

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=4.7e-16  Score=119.20  Aligned_cols=164  Identities=18%  Similarity=0.179  Sum_probs=114.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc----ch---hhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TI---TTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~---~~~~~~~~   88 (217)
                      -.|.+||.|++|||||++.+.+.+-.....+.+|....--.+..... -.+.+-|.||.-+-.    .+   ....+.++
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~-~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG-ESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC-CcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            36889999999999999999987665555555555555555555332 479999999954321    11   22345678


Q ss_pred             cEEEEEEeCCChh---hHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-EcCCC
Q 027918           89 MGILLVYDVTDES---SFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE-TSAKT  162 (217)
Q Consensus        89 d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~  162 (217)
                      .++++|+|++..+   ..++...+..++..+..  .+.|.+||+||+|+..+ .+........+.+..++..+. +|+.+
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            9999999998654   36677777777766643  46899999999997542 222223333444444543222 99999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 027918          163 NLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (217)
                      +.|++++...+.+.+....
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9999999999988887765

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.9e-17  Score=112.27  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=111.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      =|++++|..|+|||||++.|.+..... +.||.  ......+.+.+  .+++-+|.+|+..-+..|..++..+|++++++
T Consensus        21 gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTl--HPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   21 GKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTL--HPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             ceEEEEeecCCchhhHHHHHccccccc-cCCCc--CCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            489999999999999999999866442 22221  12333456666  79999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh-----------C---CeEEE
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY-----------G---IKFFE  157 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~-----------~---~~~~~  157 (217)
                      |+-+.+.+.+.+.-+..+.... -.+.|+++.+||+|.+.+.   +.++....   ....           +   ...+.
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~---se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA---SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc---cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            9999988887777666654433 2379999999999986643   22222211   1111           1   24678


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 027918          158 TSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~  176 (217)
                      ||...+.+.-+.|.|+...
T Consensus       173 csi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEccCccceeeeehhhh
Confidence            8888888877888776543

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=4.5e-16  Score=105.28  Aligned_cols=106  Identities=23%  Similarity=0.247  Sum_probs=72.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------cchhhhccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITTAYYR   86 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~   86 (217)
                      +|+|+|.+|+|||||+|.|++... .....+..+.......+..++  ..+.|+||||...-         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN--KKFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT--EEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece--eeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999998643 233334444445445566677  46789999995431         111223348


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK  129 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK  129 (217)
                      .+|++++|+|.+++.. +....+++.+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            8999999999877322 33444445553    36899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=6.3e-16  Score=127.32  Aligned_cols=148  Identities=18%  Similarity=0.128  Sum_probs=98.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC------C----------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS------F----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ....++|+++|..++|||||+++|++..      .          ........+++.....+..++  ..+.|+|+||+.
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--RHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC--cEEEEEECCCHH
Confidence            4567999999999999999999998521      0          112233334444334444444  588999999999


Q ss_pred             cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHh-
Q 027918           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEY-  151 (217)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~-  151 (217)
                      .|.......+..+|++++|+|+.+..... ...++..+...   ++| +|+++||+|+.+...  ....+++..+.... 
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98777777778999999999998754322 23333333333   577 778899999864211  11122444554443 


Q ss_pred             ----CCeEEEEcCCCCCC
Q 027918          152 ----GIKFFETSAKTNLN  165 (217)
Q Consensus       152 ----~~~~~~~Sa~~~~~  165 (217)
                          .++++++|+.+|.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence                46899999988753

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=2e-16  Score=128.72  Aligned_cols=148  Identities=24%  Similarity=0.194  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC---------------------------------CCcccceeeeEEEEEEEECCe
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------------------------------TSFITTIGIDFKIRTIELDGK   62 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~   62 (217)
                      ++|+|+|..++|||||+.+|+...-.                                 +......+.+.....+..++ 
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~-   79 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK-   79 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC-
Confidence            58999999999999999999643211                                 01112233444444444444 


Q ss_pred             EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--
Q 027918           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--  140 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--  140 (217)
                       ..+.|+||||+..|.......+..+|++++|+|+..+....+...| ..+....  ..++++++||+|+........  
T Consensus        80 -~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~~--~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        80 -RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLLG--IRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             -eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHcC--CCcEEEEEEecccccchHHHHHH
Confidence             6899999999998876666678899999999999765332222211 1222221  246889999999864222111  


Q ss_pred             -hHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q 027918          141 -TSKGQALADEYG---IKFFETSAKTNLNVEQ  168 (217)
Q Consensus       141 -~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  168 (217)
                       .++...+....+   ++++++||.+|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122333334433   4799999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=4.3e-16  Score=125.62  Aligned_cols=163  Identities=20%  Similarity=0.176  Sum_probs=120.0

Q ss_pred             CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918            4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (217)
Q Consensus         4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   83 (217)
                      ++..+..-..+.+-|.|+|.-.-|||||+..|-+..+.....-+.+..+-...+.+... -.++|.|||||..|..+..+
T Consensus       142 ~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaR  220 (683)
T KOG1145|consen  142 PEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRAR  220 (683)
T ss_pred             CccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhc
Confidence            33444445556788999999999999999999988776555555555555555555433 58999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-------HHhC--Ce
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-------DEYG--IK  154 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~--~~  154 (217)
                      -..-+|++++|+.++|.-...++    +.+......+.|+||.+||+|.++.    ..+....-.       ..+|  ..
T Consensus       221 GA~vtDIvVLVVAadDGVmpQT~----EaIkhAk~A~VpiVvAinKiDkp~a----~pekv~~eL~~~gi~~E~~GGdVQ  292 (683)
T KOG1145|consen  221 GANVTDIVVLVVAADDGVMPQTL----EAIKHAKSANVPIVVAINKIDKPGA----NPEKVKRELLSQGIVVEDLGGDVQ  292 (683)
T ss_pred             cCccccEEEEEEEccCCccHhHH----HHHHHHHhcCCCEEEEEeccCCCCC----CHHHHHHHHHHcCccHHHcCCcee
Confidence            99999999999999986433332    2344444458999999999997653    223322222       2233  67


Q ss_pred             EEEEcCCCCCCHHHHHHHHHH
Q 027918          155 FFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      ++++||++|.|++.|.+.+.-
T Consensus       293 vipiSAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  293 VIPISALTGENLDLLEEAILL  313 (683)
T ss_pred             EEEeecccCCChHHHHHHHHH
Confidence            999999999999999887553

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.70  E-value=3.4e-16  Score=128.39  Aligned_cols=151  Identities=19%  Similarity=0.109  Sum_probs=99.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|..++|||||+.+|+...  .                             ........+.+.....+..++
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            566899999999999999999987511  0                             111233344444444444444


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---F---NNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  134 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~  134 (217)
                        ..++|+|+||+.+|.......+..+|++++|+|+.....   +   ......+..+...   ++| +|+++||+|...
T Consensus        85 --~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~  159 (446)
T PTZ00141         85 --YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKT  159 (446)
T ss_pred             --eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence              789999999999998877778899999999999986421   0   1222222233333   555 678999999532


Q ss_pred             C--C---CccChHHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q 027918          135 S--K---RAVPTSKGQALADEY-----GIKFFETSAKTNLNVEQ  168 (217)
Q Consensus       135 ~--~---~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  168 (217)
                      .  .   .....+++..+....     .++++++|+.+|+|+.+
T Consensus       160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            1  1   111223344444433     36799999999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.70  E-value=1.7e-16  Score=118.38  Aligned_cols=164  Identities=18%  Similarity=0.248  Sum_probs=112.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEE-EECCeEEEEEEeeCCCccc-------ccchhhh
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER-------FRTITTA   83 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-------~~~~~~~   83 (217)
                      ....++|+++|.+|+|||||||+|+.+...+......+.+.....+ .+++  -.+.|||+||...       |+.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            3456899999999999999999999766655443444444433333 2334  4899999999554       7777888


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHH--------
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALAD--------  149 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~--------  149 (217)
                      ++.+.|.+++++++.++.---+...|..-+ .... +.++++++|.+|.....      .......++.|.+        
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCHHHHHHHH-Hhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999876433333333333 2222 37899999999974331      1111122222221        


Q ss_pred             HhC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          150 EYG--IKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       150 ~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      ...  -|++.++...+.|++++...++..+..
T Consensus       192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         192 LFQEVKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             HHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            111  478888889999999999999988863

>PRK13351 elongation factor G; Reviewed

Probab=99.70  E-value=4.2e-16  Score=134.77  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=84.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC--------CC-----C-----cccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF--------TT-----S-----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~--------~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      +...+|+|+|..|+|||||+++|+...-        ..     .     .....++......+.+++  ..+++|||||+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~   83 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGH   83 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCc
Confidence            4567999999999999999999975311        00     0     012222333334455555  79999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .++...+..+++.+|++++|+|+++.........| ..+..   .++|+++|+||+|+..
T Consensus        84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~  139 (687)
T PRK13351         84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence            99988889999999999999999887665544444 33333   2689999999999864

>PRK00049 elongation factor Tu; Reviewed

Probab=99.69  E-value=1.2e-15  Score=123.87  Aligned_cols=146  Identities=18%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      ...++|+++|..++|||||+++|++...                .....+..+.+.....+..++  ..+.|+||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence            4569999999999999999999986211                011233444444333333333  6789999999988


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCCCc--cChHHHHHHHHHh--
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMDESKRA--VPTSKGQALADEY--  151 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  151 (217)
                      |.......+..+|++++|+|+..+... ....++..+...   +.|++ +++||+|+......  ....++..+....  
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            877666778899999999999875322 222333334333   57876 57999998542111  1122344444433  


Q ss_pred             ---CCeEEEEcCCCCC
Q 027918          152 ---GIKFFETSAKTNL  164 (217)
Q Consensus       152 ---~~~~~~~Sa~~~~  164 (217)
                         +++++++||.+|.
T Consensus       164 ~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        164 PGDDTPIIRGSALKAL  179 (396)
T ss_pred             CccCCcEEEeeccccc
Confidence               3689999999875

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.69  E-value=1.6e-15  Score=118.95  Aligned_cols=81  Identities=20%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEE---------------------ECC-eEEEEEEeeCCCc-
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE---------------------LDG-KRIKLQIWDTAGQ-   74 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~Dt~G~-   74 (217)
                      |+++|.|++|||||+++|.+........+..+.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999999876533333433333322222                     122 2378999999997 


Q ss_pred             ---ccccchhhh---cccCCcEEEEEEeCC
Q 027918           75 ---ERFRTITTA---YYRGAMGILLVYDVT   98 (217)
Q Consensus        75 ---~~~~~~~~~---~~~~~d~~i~v~d~~   98 (217)
                         ..+..+...   .++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               344444444   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.69  E-value=1.7e-15  Score=126.22  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=80.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcC--CCCC--------------------CcccceeeeEEEEEEEECCeEEEEEEe
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQIW   69 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~   69 (217)
                      .+..-+|+|+|.+++|||||+++|+..  ....                    ....+.++......+.+++  ..+++|
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~--~~inli   84 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRD--CLINLL   84 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECC--EEEEEE
Confidence            355679999999999999999999741  1100                    0011112223333444555  789999


Q ss_pred             eCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           70 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ||||+..|.......++.+|++|+|+|+.+.... ....++.....   .++|+++++||+|+..
T Consensus        85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRDG  145 (526)
T ss_pred             ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCcccc
Confidence            9999999888777788999999999999875322 22333333333   3789999999999754

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=2.6e-15  Score=110.85  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=101.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-----------hhh
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-----------ITT   82 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~~   82 (217)
                      ++|+++|.+|+|||||+|.|++.......  .+..+.........+++  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987654322  23334444444555566  5899999999554321           111


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc-----cChHHHHHHHHHhCCeE
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA-----VPTSKGQALADEYGIKF  155 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~  155 (217)
                      .....+|++++|+++.+ -+ ......++.+...++.  -.++++|+|+.|.......     ......+.+....+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FT-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cC-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            23467899999999876 22 2223344445444332  1578899999995432110     11244556666666555


Q ss_pred             EEEc-----CCCCCCHHHHHHHHHHHHHH
Q 027918          156 FETS-----AKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       156 ~~~S-----a~~~~~i~~l~~~l~~~~~~  179 (217)
                      +..+     +..+.++++|++.|.+.+.+
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            5554     34567788888888777765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.68  E-value=4.4e-16  Score=123.74  Aligned_cols=165  Identities=22%  Similarity=0.223  Sum_probs=124.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCcccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   74 (217)
                      ++.-+..|+-.-.-|||||..+|+..               ...-....+.++......+.+   ++..+.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            44457889999999999999998652               122334556666666666555   446689999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCe
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIK  154 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  154 (217)
                      -.|.....+.+..+.++++|+|++..--..++.+.+..+..    +.-+|-|+||+||+.+......+++++..----..
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d  162 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD  162 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcch
Confidence            99998888889999999999999987666777776666655    68899999999997754333333333332222236


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918          155 FFETSAKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      .+.+||++|.|++++++.|++.+....
T Consensus       163 av~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         163 AVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             heeEecccCCCHHHHHHHHHhhCCCCC
Confidence            789999999999999999999886544

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=1.7e-15  Score=117.11  Aligned_cols=144  Identities=20%  Similarity=0.270  Sum_probs=92.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCc------------------ccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF------------------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      +|+++|.+|+|||||+++|+........                  ....+.......+.+++  ..+.+|||||+..+.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999753211000                  01222233334455555  689999999998887


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE-
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE-  157 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-  157 (217)
                      ..+...++.+|++++|+|+++.........| ..+..   .+.|+++|+||+|+...   ...+....+....+.+++. 
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~---~~~~~~~~l~~~~~~~~~~~  151 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA---DFDKTLAALQEAFGRPVVPL  151 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC---CHHHHHHHHHHHhCCCeEEE
Confidence            7788889999999999999886554433333 23333   26899999999998542   1223344444445544333 


Q ss_pred             -EcCCCCCCHHHH
Q 027918          158 -TSAKTNLNVEQV  169 (217)
Q Consensus       158 -~Sa~~~~~i~~l  169 (217)
                       +...++.++..+
T Consensus       152 ~ip~~~~~~~~~~  164 (268)
T cd04170         152 QLPIGEGDDFKGV  164 (268)
T ss_pred             EecccCCCceeEE
Confidence             334454444333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.68  E-value=1.5e-16  Score=113.96  Aligned_cols=116  Identities=23%  Similarity=0.436  Sum_probs=72.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE-CCeEEEEEEeeCCCcccccchhhh---cccCCcE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTA---YYRGAMG   90 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~---~~~~~d~   90 (217)
                      ...|+++|+.|||||+|+.+|.++...++..+.   +... ...+ ......+.++|+|||.+.+.....   +...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~---e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM---ENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S---SEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc---cCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            357999999999999999999998665554443   2221 2222 112247999999999998875444   4788999


Q ss_pred             EEEEEeCCC-hhhHHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCC
Q 027918           91 ILLVYDVTD-ESSFNNIRNWIRNI-EQH--ASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        91 ~i~v~d~~~-~~s~~~~~~~~~~l-~~~--~~~~~pvivv~nK~Dl~~  134 (217)
                      +|||+|++. +..+.++.+++-.+ ...  ....+|++|++||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999974 34455555543333 222  235799999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.67  E-value=4e-15  Score=113.33  Aligned_cols=155  Identities=21%  Similarity=0.192  Sum_probs=112.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY   85 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~   85 (217)
                      +---.|+++|.|++|||||++.|.+........++++.+...-.+.+++  +++++.|+||.-.-.       .......
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3346899999999999999999999888877777778888888888888  899999999843221       2345577


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHH--------------------------------------------HHHHHHHHhc---
Q 027918           86 RGAMGILLVYDVTDESS-FNNIR--------------------------------------------NWIRNIEQHA---  117 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~l~~~~---  117 (217)
                      ++||++++|+|+....+ .+.+.                                            .++++..-+.   
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999986433 21111                                            1111111100   


Q ss_pred             ------------------CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          118 ------------------SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       118 ------------------~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                                        ..-+|.++|.||+|+..      .+....+.+..  .++.+||..+.|++++.+.|-+.+
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                              01378899999999754      23333333333  889999999999999999988776

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.67  E-value=7e-16  Score=132.12  Aligned_cols=153  Identities=22%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC---------------------------------cccceeeeEEEEEE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---------------------------------FITTIGIDFKIRTI   57 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~   57 (217)
                      .....++|+++|.+++|||||+++|+...-...                                 ...+.+.+.....+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            344568999999999999999999986322111                                 01122333333334


Q ss_pred             EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..++  ..+.|+||||++.|.......+..+|++++|+|+..+....+.. .+..+....  ..+++|++||+|+.+...
T Consensus       100 ~~~~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e-~~~~~~~~~--~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506        100 ATPK--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR-HSFIASLLG--IRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             ccCC--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH-HHHHHHHhC--CCeEEEEEEecccccchh
Confidence            4444  57889999999887665555678999999999997653221111 112222221  257889999999854211


Q ss_pred             ccC---hHHHHHHHHHhC---CeEEEEcCCCCCCHHH
Q 027918          138 AVP---TSKGQALADEYG---IKFFETSAKTNLNVEQ  168 (217)
Q Consensus       138 ~~~---~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~  168 (217)
                      ...   ..++..+....+   ++++++||++|.|+++
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            111   122333334444   4699999999999885

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=2.1e-15  Score=125.76  Aligned_cols=117  Identities=18%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcC--CCCC--------------------CcccceeeeEEEEEEEECCeEEEEEE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT--------------------SFITTIGIDFKIRTIELDGKRIKLQI   68 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l   68 (217)
                      +..+..+|+|+|.+++|||||+++|+..  ....                    ......++......+.+++  ..+.|
T Consensus         7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~--~~inl   84 (527)
T TIGR00503         7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD--CLVNL   84 (527)
T ss_pred             hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC--eEEEE
Confidence            3456679999999999999999998631  1100                    0011112222333344444  79999


Q ss_pred             eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      |||||+..|.......++.+|++|+|+|+.+.-. .....++.....   .+.|+++++||+|+.
T Consensus        85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~  145 (527)
T TIGR00503        85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD  145 (527)
T ss_pred             EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence            9999998888777778899999999999987421 122334443333   368999999999984

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.67  E-value=2.8e-15  Score=122.86  Aligned_cols=160  Identities=18%  Similarity=0.101  Sum_probs=98.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcC------CC----------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDG------SF----------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ....++|+++|..++|||||+++|.+.      ..          .+...+..+.+.....+..++  .++.|+||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--RHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--eEEEEEECCCcc
Confidence            356799999999999999999999631      10          112224444454444433333  689999999998


Q ss_pred             cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHh-
Q 027918           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEY-  151 (217)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~--~~~~~~~~~~~~-  151 (217)
                      .|..........+|++++|+|+.+..... ....+..+...   +.| +|+++||+|+.+.....  ...++..+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            87665555667899999999997653222 22223333333   578 47889999986421100  111233333322 


Q ss_pred             ----CCeEEEEcCC---CCCC-------HHHHHHHHHHHH
Q 027918          152 ----GIKFFETSAK---TNLN-------VEQVFFSIARDI  177 (217)
Q Consensus       152 ----~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~  177 (217)
                          .++++++|+.   +|.|       +.++++.|.+.+
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence                2678888875   4544       556666655543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=8e-16  Score=122.78  Aligned_cols=167  Identities=20%  Similarity=0.180  Sum_probs=113.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-cch--------hhh
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-RTI--------TTA   83 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~--------~~~   83 (217)
                      ..++|+|+|.||+|||||+|.|.+.... .++.++++.+.....+.++|  +.+.|.||+|..+- ...        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            3489999999999999999999998765 67788888888888888888  89999999997651 111        133


Q ss_pred             cccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHh-CC
Q 027918           84 YYRGAMGILLVYDVTD--ESSFNNIRNWIRNIEQHAS------DNVNKVLVGNKADMDESKRAVPTSKG-QALADEY-GI  153 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~------~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~~~-~~  153 (217)
                      -+..+|++++|+|+..  -++...+...+.....-..      ...|++++.||.|+...-......-. ..-+... ..
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            5678999999999943  3333333333333322111      23689999999998654222222111 0011111 13


Q ss_pred             -eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          154 -KFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       154 -~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                       ...++|+++++|+++|...|.+.+...-.
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             34569999999999999998887765433

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.5e-15  Score=109.01  Aligned_cols=155  Identities=23%  Similarity=0.297  Sum_probs=105.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc---CCcEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR---GAMGIL   92 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---~~d~~i   92 (217)
                      -.|+++|+.+||||+|+-+|..+.+..+..+   ++.....+...+  -.++++|.|||.+.+.-...+++   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            5799999999999999999998866554443   444555555555  35899999999998876666666   789999


Q ss_pred             EEEeCCC-hhhHHHHHHH-HHHHHHh--cCCCCcEEEEEeCCCCCCCCCc-cChHH----HHHH----------------
Q 027918           93 LVYDVTD-ESSFNNIRNW-IRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSK----GQAL----------------  147 (217)
Q Consensus        93 ~v~d~~~-~~s~~~~~~~-~~~l~~~--~~~~~pvivv~nK~Dl~~~~~~-~~~~~----~~~~----------------  147 (217)
                      ||+|... .....++..+ +..+...  ....+|++|.+||.|+.-+... ...+.    +..+                
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999754 2334445543 3333333  3456899999999998543221 11111    1111                


Q ss_pred             ----------------HHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          148 ----------------ADEYGIKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       148 ----------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                                      +....+.+.++|++++ +++++-+||.+.
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                            0112356888999988 899999998765

>PRK12739 elongation factor G; Reviewed

Probab=99.65  E-value=4.1e-15  Score=128.49  Aligned_cols=117  Identities=18%  Similarity=0.126  Sum_probs=86.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCC--------C----------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF--------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .+...+|+|+|.+++|||||+++|+...-        .          .......+.+.....+.+++  ..+.|+||||
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG   82 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPG   82 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCC
Confidence            45667999999999999999999975210        0          01234455566666666766  6899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +..+...+...++.+|++++|+|+.+.....+. ..+..+..   .+.|+++++||+|+..
T Consensus        83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence            988888888889999999999999876433322 23333333   2689999999999864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.63  E-value=3e-15  Score=122.60  Aligned_cols=162  Identities=15%  Similarity=0.151  Sum_probs=101.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEE---------------EEC-C------------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTI---------------ELD-G------------   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~---------------~~~-~------------   61 (217)
                      ...++|.++|.-..|||||+..|.+...   .+......+.+......               ... +            
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999986322   11112222211111100               000 0            


Q ss_pred             ---eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           62 ---KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        62 ---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                         ....+.|+|+||++.|.......+..+|++++|+|+..+ ..... ...+..+... . -.++|+|+||+|+.+...
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~l-g-i~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEIM-K-LKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHHc-C-CCcEEEEEecccccCHHH
Confidence               013789999999998877767777899999999999864 12111 2222222222 1 246899999999864211


Q ss_pred             c-cChHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          138 A-VPTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       138 ~-~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      . ...+++..+...   .+.+++++||++|.|++.|++.|.+.+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            1 112233333322   247899999999999999998888644

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.63  E-value=7e-15  Score=127.09  Aligned_cols=117  Identities=18%  Similarity=0.113  Sum_probs=85.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------------CcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------------SFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .+...+|+|+|.+++|||||+++|+...-..                  ......+++.....+.+++  ..+.||||||
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG   84 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPG   84 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCC
Confidence            3456799999999999999999997421100                  0123344555556666666  7899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +..+...+...++.+|++++|+|+.+.....+.. ++..+...   +.|+++|+||+|+..
T Consensus        85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~---~~p~ivviNK~D~~~  141 (689)
T TIGR00484        85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY---EVPRIAFVNKMDKTG  141 (689)
T ss_pred             CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc---CCCEEEEEECCCCCC
Confidence            9988888888999999999999998765444332 33333332   689999999999865

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.61  E-value=1.7e-14  Score=109.82  Aligned_cols=162  Identities=15%  Similarity=0.276  Sum_probs=121.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC--eEEEEEEeeCCCcccccchhhhcccCC----c
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRGA----M   89 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~----d   89 (217)
                      -+|+|+|+.++||||||.+|.+..   .+.+..+.+|.+..+.-+.  ...++.+|-..|+.-+..+....+...    .
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            489999999999999999999854   6677778888777765432  236889999999877777666555432    4


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHHHHHh-------------------------c--------------------------
Q 027918           90 GILLVYDVTDES-SFNNIRNWIRNIEQH-------------------------A--------------------------  117 (217)
Q Consensus        90 ~~i~v~d~~~~~-s~~~~~~~~~~l~~~-------------------------~--------------------------  117 (217)
                      ++|++.|.+++- -++.+..|.+-+..+                         .                          
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            688899999983 356666665444311                         0                          


Q ss_pred             ----------CCCCcEEEEEeCCCCCC----------CCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          118 ----------SDNVNKVLVGNKADMDE----------SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       118 ----------~~~~pvivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                                ..++|++||++|+|...          +........++.||..+|..+|.+|+++..|++-+..+|.+.+
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~  289 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS  289 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence                      01589999999999721          1122345668889999999999999999999999999999988


Q ss_pred             HHH
Q 027918          178 KQR  180 (217)
Q Consensus       178 ~~~  180 (217)
                      +..
T Consensus       290 yG~  292 (473)
T KOG3905|consen  290 YGF  292 (473)
T ss_pred             cCc
Confidence            653

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.61  E-value=4.9e-14  Score=113.71  Aligned_cols=83  Identities=23%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEE---------------------C-CeEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL---------------------D-GKRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~l~Dt~G   73 (217)
                      ++|+++|.||+|||||+|+|.+........+..+.+.....+.+                     + ...+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988765444444444444332221                     1 1236799999999


Q ss_pred             cc----cccchhhhc---ccCCcEEEEEEeCC
Q 027918           74 QE----RFRTITTAY---YRGAMGILLVYDVT   98 (217)
Q Consensus        74 ~~----~~~~~~~~~---~~~~d~~i~v~d~~   98 (217)
                      ..    ....+...+   ++.+|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            53    233333344   78999999999996

>PRK00007 elongation factor G; Reviewed

Probab=99.61  E-value=2.5e-14  Score=123.63  Aligned_cols=117  Identities=18%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC--CC----------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FT----------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .+...+|+|+|.+++|||||+++|+...  ..                .......+.+.....+.+.+  ..++|+||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCC
Confidence            4556799999999999999999997411  00                00234445555556666665  6899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +..+.......++.+|++++|+|+...-...+..-| ..+...   +.|+++++||+|+..
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~~---~~p~iv~vNK~D~~~  141 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADKY---KVPRIAFVNKMDRTG  141 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHHc---CCCEEEEEECCCCCC
Confidence            988776677778899999999998776443333323 333333   689999999999853

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=2.4e-14  Score=112.51  Aligned_cols=154  Identities=20%  Similarity=0.160  Sum_probs=102.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++++|+|..++|||||+-+|+..                               ...+....+.+++.....+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            56789999999999999999999651                               11233445556665555555444


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                        ..++|+|+||+..|-.....-...||++|+|+|+.+.+.   +..  ..+....+.+..+ -..+||++||+|+.+-.
T Consensus        85 --~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~wd  161 (428)
T COG5256          85 --YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             --ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccccC
Confidence              689999999999888888888899999999999988631   111  1111222333332 23568888999986411


Q ss_pred             Cc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918          137 RA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV  169 (217)
Q Consensus       137 ~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  169 (217)
                      ..   ....+...+.+..+     ++|+++|+..|.|+.+.
T Consensus       162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            11   11122333444433     57999999999988753

>PRK12740 elongation factor G; Reviewed

Probab=99.59  E-value=2.8e-14  Score=123.34  Aligned_cols=108  Identities=24%  Similarity=0.242  Sum_probs=78.0

Q ss_pred             EcCCCCcHHHHHHHHHcCCCC------------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhh
Q 027918           21 IGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT   82 (217)
Q Consensus        21 ~G~~~~GKttli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   82 (217)
                      +|.+++|||||+++|+...-.                  .....+.++......+.+++  ..+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            699999999999999543111                  01123344455555666666  7899999999988877788


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..+..+|++++|+|++..........| ..+..   .+.|+++|+||+|+..
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence            889999999999999886655443333 23333   2689999999999753

>PRK09866 hypothetical protein; Provisional

Probab=99.58  E-value=1.4e-13  Score=114.46  Aligned_cols=109  Identities=18%  Similarity=0.166  Sum_probs=73.0

Q ss_pred             EEEEEeeCCCcccc-----cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918           64 IKLQIWDTAGQERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA  138 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~  138 (217)
                      ..+.|+||||....     .......+.++|+++||+|.....+..+ ....+.+..... +.|+++|+||+|+.+. ..
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K-~~PVILVVNKIDl~dr-ee  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQ-SVPLYVLVNKFDQQDR-NS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCC-CCCEEEEEEcccCCCc-cc
Confidence            36889999996432     2233457899999999999987433332 223444444321 3599999999998532 22


Q ss_pred             cChHHHHHHHHHh----C---CeEEEEcCCCCCCHHHHHHHHHH
Q 027918          139 VPTSKGQALADEY----G---IKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       139 ~~~~~~~~~~~~~----~---~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      ...+....+....    .   ..+|++||+.|.|++++++.|..
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            2344444443211    2   36999999999999999998876

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.58  E-value=8.7e-14  Score=105.74  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=78.5

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---h---
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---I---   80 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~---   80 (217)
                      .+......++|+|+|.+|+|||||+|.|++...... .....+..........++  ..+.||||||......   .   
T Consensus        24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~  101 (249)
T cd01853          24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRK  101 (249)
T ss_pred             hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHH
Confidence            355667789999999999999999999999765322 222333444444455566  6899999999654421   0   


Q ss_pred             ----hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCC
Q 027918           81 ----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMD  133 (217)
Q Consensus        81 ----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~  133 (217)
                          ...++.  ..|+++||..++....-..-...++.+...++.+  .++++|.||+|..
T Consensus       102 ~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         102 ILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence                122332  5788888876664321112223444454433321  4689999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.54  E-value=4.1e-14  Score=93.06  Aligned_cols=136  Identities=24%  Similarity=0.237  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc----chhhhcccCCcEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TITTAYYRGAMGIL   92 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~~~~~~~~d~~i   92 (217)
                      ||+++|..|+|||||.+.|.+...-  +..|...+       ++.+    -.+||||...-+    +.......++|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQAve-------~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQAVE-------FNDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccceee-------ccCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            7999999999999999999986432  23333322       2111    136999944322    22344557899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~  171 (217)
                      +|-+++++++.     +-..+....  ..|+|-|++|.||++   ....+..+.+..+-|. ++|.+|+.++.|++++++
T Consensus        70 ~v~~and~~s~-----f~p~f~~~~--~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917          70 YVHAANDPESR-----FPPGFLDIG--VKKVIGVVTKADLAE---DADISLVKRWLREAGAEPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             eeecccCcccc-----CCccccccc--ccceEEEEecccccc---hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence            99999998652     111122222  457999999999964   2345666777788885 899999999999999999


Q ss_pred             HHHH
Q 027918          172 SIAR  175 (217)
Q Consensus       172 ~l~~  175 (217)
                      +|..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            8764

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.54  E-value=1.4e-13  Score=109.43  Aligned_cols=163  Identities=17%  Similarity=0.221  Sum_probs=113.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCC--CC------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGS--FT------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      .-+|+|+-.-.-|||||+..|+...  |.            .....--++.+..+...+..+.+.++|+|||||..|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            3479999999999999999997632  11            112222234444444333333389999999999999999


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-------hCC
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-------YGI  153 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~  153 (217)
                      ....++..|++++++|+.+... ...+..+   .+....+.+.|+|+||+|.+++......++..++...       +++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpM-PQTrFVl---kKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPM-PQTRFVL---KKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCC-CchhhhH---HHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            9999999999999999987542 2222222   2222336788999999999876555555555555443       457


Q ss_pred             eEEEEcCCCC----------CCHHHHHHHHHHHHHHHh
Q 027918          154 KFFETSAKTN----------LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       154 ~~~~~Sa~~~----------~~i~~l~~~l~~~~~~~~  181 (217)
                      |++..|+..|          .++..||+.|++++....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            8999999876          467788888888875443

>cd00066 G-alpha G protein alpha subunit

Probab=99.53  E-value=6.2e-13  Score=104.87  Aligned_cols=124  Identities=19%  Similarity=0.191  Sum_probs=84.8

Q ss_pred             EEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHh-cCCCCcEE
Q 027918           56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNVNKV  124 (217)
Q Consensus        56 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~pvi  124 (217)
                      .+.+++  +.+.+||++|+...+..|.+++.++++++||+|+++.          ..+.+....+..+... .-.+.|++
T Consensus       155 ~f~~~~--~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pil  232 (317)
T cd00066         155 KFTIKN--LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSII  232 (317)
T ss_pred             EEEecc--eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEE
Confidence            344444  7899999999999999999999999999999999873          2233322333333221 12468999


Q ss_pred             EEEeCCCCCCC--------------CC-ccChHHHHHHHHH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          125 LVGNKADMDES--------------KR-AVPTSKGQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       125 vv~nK~Dl~~~--------------~~-~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      +++||.|+...              .. ....+.+..|...          ..+..+.++|.+-.+++.+|+.+.+.+..
T Consensus       233 l~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         233 LFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             EEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            99999996321              11 2233444444322          12456788999999999999999888876


Q ss_pred             Hh
Q 027918          180 RL  181 (217)
Q Consensus       180 ~~  181 (217)
                      ..
T Consensus       313 ~~  314 (317)
T cd00066         313 NN  314 (317)
T ss_pred             HH
Confidence            53

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=4.5e-13  Score=103.49  Aligned_cols=123  Identities=19%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-------
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------   80 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------   80 (217)
                      .++....++|+|+|.+|+||||++|+|++...... ...+.+..........++  ..+.|+||||.......       
T Consensus        32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~  109 (313)
T TIGR00991        32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNI  109 (313)
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHH
Confidence            34446778999999999999999999998765321 122222222223333455  68999999996643211       


Q ss_pred             hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 027918           81 TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMD  133 (217)
Q Consensus        81 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~  133 (217)
                      ...++  ...|+++||.+++.....+.-...++.+...++.  -.++|||+|+.|..
T Consensus       110 ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       110 IKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            11112  2689999997665322211222344444444321  24689999999964

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.51  E-value=5.2e-13  Score=99.66  Aligned_cols=161  Identities=19%  Similarity=0.212  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc--ccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-------hh----h
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF--ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------IT----T   82 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~----~   82 (217)
                      ++|+|+|.+|+||||++|.+++.......  ....+..........++  ..+.|+||||......       ..    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987764332  22334445555557777  6899999999432211       11    1


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCCCc--c----ChHHHHHHHHHhCCe
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDESKRA--V----PTSKGQALADEYGIK  154 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~nK~Dl~~~~~~--~----~~~~~~~~~~~~~~~  154 (217)
                      ......|+++||+..... + ......+..+...++.  -..++||+|..|-..+...  .    ....++.+....+-.
T Consensus        79 ~~~~g~ha~llVi~~~r~-t-~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-T-EEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--S-HHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecCcc-h-HHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            134578999999998832 2 1222233344444332  1457888998885332220  0    112355666777777


Q ss_pred             EEEEcCC------CCCCHHHHHHHHHHHHHHH
Q 027918          155 FFETSAK------TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       155 ~~~~Sa~------~~~~i~~l~~~l~~~~~~~  180 (217)
                      |+..+.+      ....+.+|++.+-+.+.+.
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            8777766      2345667777766666554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.51  E-value=1.9e-13  Score=118.61  Aligned_cols=118  Identities=20%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC---------------CCCCC-cccceeeeE--EEEEEEECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG---------------SFTTS-FITTIGIDF--KIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~---------------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      ++..+|+|+|..++|||||+++|+..               .+... .....++..  ....+.+++....+.||||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45679999999999999999999752               11110 011112221  1112234445589999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..|.......++.+|++++|+|+.+.-.......|. .+..   .+.|+++|+||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH---cCCCEEEEEEChhccc
Confidence            998887888899999999999998743322222222 2222   2578899999999754

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00275 G_alpha G protein alpha subunit

Probab=99.51  E-value=1.3e-12  Score=103.96  Aligned_cols=127  Identities=18%  Similarity=0.180  Sum_probs=85.6

Q ss_pred             EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHh-cCCCC
Q 027918           53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQH-ASDNV  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~-~~~~~  121 (217)
                      ....+.+++  +.+.+||.+|+...+..|.+++.+++++|||+|+++-+          .+.+....+..+... .-.+.
T Consensus       175 ~~~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~  252 (342)
T smart00275      175 QETAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANT  252 (342)
T ss_pred             EEEEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCC
Confidence            334455555  68899999999999999999999999999999998732          233333333333221 22468


Q ss_pred             cEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----------hCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          122 NKVLVGNKADMDES--------------KRAVPTSKGQALADE-----------YGIKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       122 pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      |+++++||.|+...              ......+.+..|...           ..+..+.++|.+-.++..+|+.+.+.
T Consensus       253 piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~  332 (342)
T smart00275      253 SIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDI  332 (342)
T ss_pred             cEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHH
Confidence            99999999997321              111223333333221           12456788899999999999998888


Q ss_pred             HHHHh
Q 027918          177 IKQRL  181 (217)
Q Consensus       177 ~~~~~  181 (217)
                      +....
T Consensus       333 I~~~~  337 (342)
T smart00275      333 ILQRN  337 (342)
T ss_pred             HHHHH
Confidence            77653

Subunit of G proteins that contains the guanine nucleotide binding site

>PTZ00258 GTP-binding protein; Provisional

Probab=99.51  E-value=5.5e-13  Score=106.71  Aligned_cols=91  Identities=20%  Similarity=0.165  Sum_probs=65.9

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTA   72 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~   72 (217)
                      ...-....++|.|+|.||+|||||+|.|.+........+.++.+.....+.+.+.+               .++.++|+|
T Consensus        14 ~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtp   93 (390)
T PTZ00258         14 LLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIA   93 (390)
T ss_pred             hhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECC
Confidence            33444667899999999999999999999887766556777766666666554322               358999999


Q ss_pred             Cccccc-------chhhhcccCCcEEEEEEeCC
Q 027918           73 GQERFR-------TITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        73 G~~~~~-------~~~~~~~~~~d~~i~v~d~~   98 (217)
                      |...-.       ......++++|++++|+|..
T Consensus        94 GLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         94 GLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            954211       12233567899999999974

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.50  E-value=5.7e-13  Score=117.69  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=97.0

Q ss_pred             cHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE----------------EEEEEeeCCCcccccchhhhcccCCcE
Q 027918           27 GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR----------------IKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        27 GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      +||||+.+|-+..+......+.|.++....+..+...                -.+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999887766556666666655555443210                128999999999998877778888999


Q ss_pred             EEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC------------hHHHHHH--------
Q 027918           91 ILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------------TSKGQAL--------  147 (217)
Q Consensus        91 ~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~------------~~~~~~~--------  147 (217)
                      +++|+|+++   +.+++.+.    .+...   +.|+++|+||+|+........            .....++        
T Consensus       553 vlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~  625 (1049)
T PRK14845        553 AVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELI  625 (1049)
T ss_pred             EEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence            999999987   33433332    22222   689999999999853211000            0001111        


Q ss_pred             --HHH-------------h--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          148 --ADE-------------Y--GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       148 --~~~-------------~--~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                        ..+             .  .++++++||++|+|+++++.+|....
T Consensus       626 ~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        626 GKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             hHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence              011             1  26899999999999999998776543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.50  E-value=1.3e-13  Score=110.45  Aligned_cols=165  Identities=19%  Similarity=0.144  Sum_probs=118.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc----cchhh-----h
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF----RTITT-----A   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----~~~~~-----~   83 (217)
                      .+.-.++|+|.|++|||||+|.+........+.++++...+...+.+.  ...++++||||.-..    +....     .
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            455689999999999999999999888877777776666665555554  478999999994321    11111     1


Q ss_pred             cccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC--ccChHHHHHHHHHhCCeEEEEc
Q 027918           84 YYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR--AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      ...--.+++|+.|++..  .|.+....++..+...+. +.|+|+|+||+|+...+.  ....+.++.....-+++++.+|
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS  322 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS  322 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence            11223568889998864  567777778888888876 689999999999754222  1222334445555568999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~  180 (217)
                      +.+.+|+-++....++.+..+
T Consensus       323 ~~~eegVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  323 CVQEEGVMDVRTTACEALLAA  343 (620)
T ss_pred             ccchhceeeHHHHHHHHHHHH
Confidence            999999998877777666544

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.49  E-value=1.2e-12  Score=107.21  Aligned_cols=162  Identities=16%  Similarity=0.298  Sum_probs=116.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC--eEEEEEEeeCCCcccccchhhhcccC----Cc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG--KRIKLQIWDTAGQERFRTITTAYYRG----AM   89 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d   89 (217)
                      -.|+|+|..++||||||.+|.+.   +.+.++.+.+|.+..+.-++  ....+.+|-..|...+..+....+..    --
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            58999999999999999999764   34567778888877765432  22578999998877777666554542    24


Q ss_pred             EEEEEEeCCChhh-HHHHHHHHHHHH-------------------------Hhc--------------------------
Q 027918           90 GILLVYDVTDESS-FNNIRNWIRNIE-------------------------QHA--------------------------  117 (217)
Q Consensus        90 ~~i~v~d~~~~~s-~~~~~~~~~~l~-------------------------~~~--------------------------  117 (217)
                      ++|+|+|.+.|.. ++.+..|+..++                         .+.                          
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~  182 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV  182 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence            6888999998754 334444433332                         000                          


Q ss_pred             -----------CCCCcEEEEEeCCCCCC----C------CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          118 -----------SDNVNKVLVGNKADMDE----S------KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       118 -----------~~~~pvivv~nK~Dl~~----~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                                 ..++|++||++|+|...    .      ......+-++.||..+|..+|.+|++...+++.++.+|.+.
T Consensus       183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~  262 (472)
T PF05783_consen  183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR  262 (472)
T ss_pred             cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence                       00479999999999632    0      11133455778888999999999999999999999999988


Q ss_pred             HHHH
Q 027918          177 IKQR  180 (217)
Q Consensus       177 ~~~~  180 (217)
                      +...
T Consensus       263 l~~~  266 (472)
T PF05783_consen  263 LYGF  266 (472)
T ss_pred             hccC
Confidence            8654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.49  E-value=2.9e-13  Score=101.01  Aligned_cols=120  Identities=17%  Similarity=0.152  Sum_probs=68.7

Q ss_pred             EEEEEEeeCCCccccc------chhhhccc--CCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           63 RIKLQIWDTAGQERFR------TITTAYYR--GAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      .+.+.|+||||+-+.-      ..+...+.  ..-++++|+|..+..+ ...+...+-.......-.+|+|+|+||+|+.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS  194 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence            3578999999976421      11222222  2345666777543222 1123333323333334479999999999986


Q ss_pred             CCCCccCh-HHHHHH---HH---------------------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          134 ESKRAVPT-SKGQAL---AD---------------------EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       134 ~~~~~~~~-~~~~~~---~~---------------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      +......+ .+.+.|   .+                     ..++..+-+|+.+|.|++++|..+-..+-+...
T Consensus       195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~  268 (366)
T KOG1532|consen  195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEE  268 (366)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence            64222110 011111   11                     113678899999999999999998877765433

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.48  E-value=7.7e-13  Score=102.01  Aligned_cols=150  Identities=23%  Similarity=0.214  Sum_probs=104.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC---------------------------------CCCCcccceeeeEEEEEEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---------------------------------FTTSFITTIGIDFKIRTIEL   59 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~   59 (217)
                      ...++.+-+|.-.=||||||-+|+...                                 .......+.++++.+..+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            456899999999999999999997621                                 11123344556665555443


Q ss_pred             CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027918           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV  139 (217)
Q Consensus        60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~  139 (217)
                      +  +.+|.+-|||||+.|....-.-...+|++|+++|+.  ...-+...-...+....+- ..+++.+||+||.+-....
T Consensus        84 ~--KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR--~Gvl~QTrRHs~I~sLLGI-rhvvvAVNKmDLvdy~e~~  158 (431)
T COG2895          84 E--KRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR--KGVLEQTRRHSFIASLLGI-RHVVVAVNKMDLVDYSEEV  158 (431)
T ss_pred             c--cceEEEecCCcHHHHhhhhhcccccccEEEEEEecc--hhhHHHhHHHHHHHHHhCC-cEEEEEEeeecccccCHHH
Confidence            3  369999999999999887777788999999999993  3333333333344444432 5678889999997744333


Q ss_pred             Ch---HHHHHHHHHhC---CeEEEEcCCCCCCHH
Q 027918          140 PT---SKGQALADEYG---IKFFETSAKTNLNVE  167 (217)
Q Consensus       140 ~~---~~~~~~~~~~~---~~~~~~Sa~~~~~i~  167 (217)
                      ..   .+-..|+..++   ..++++||..|+|+-
T Consensus       159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            32   33345566666   479999999998875

>PRK13768 GTPase; Provisional

Probab=99.45  E-value=6.7e-13  Score=101.49  Aligned_cols=113  Identities=17%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             EEEEeeCCCcccc---cchhhhcccC-----CcEEEEEEeCCChhhHHHHHH--HHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           65 KLQIWDTAGQERF---RTITTAYYRG-----AMGILLVYDVTDESSFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        65 ~~~l~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~--~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .+.+||+||+.+.   +..+..+++.     .+++++|+|+.......+...  |+...... ..+.|+++|+||+|+..
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~  176 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS  176 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence            6899999997663   3344333322     889999999966443333222  22222211 23689999999999854


Q ss_pred             CCCcc-ChHHHH------------------------HHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          135 SKRAV-PTSKGQ------------------------ALADEYG--IKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       135 ~~~~~-~~~~~~------------------------~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ..... ......                        ...+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            32110 000000                        1122233  47899999999999999999988763

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.44  E-value=1.3e-12  Score=113.71  Aligned_cols=118  Identities=21%  Similarity=0.181  Sum_probs=78.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC--C--------------CcccceeeeEEEEEE--EECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT--T--------------SFITTIGIDFKIRTI--ELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~   74 (217)
                      ++.-+|+|+|..++|||||+.+|+...-.  .              ......++......+  ..++....++|+||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            45568999999999999999999753211  0              001111222222222  22434478999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..|.......++.+|++++|+|+...-.......|. .....   +.|.|+++||+|...
T Consensus        98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~~---~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALRE---RVKPVLFINKVDRLI  153 (731)
T ss_pred             cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHHc---CCCeEEEEECchhhc
Confidence            998888888889999999999988754333333333 22222   467899999999753

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.43  E-value=1.1e-12  Score=89.47  Aligned_cols=114  Identities=31%  Similarity=0.374  Sum_probs=81.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-cceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      +||+++|..|+|||+|+.++....+...+. ++.+                           +......+++.++.++++
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999998777654333 3322                           223344567788999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      |+..+.++++.+  |...+......++|.++++||.|+.+.. ....+..        ..++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~~~~~~~--------~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-QVATEEG--------LEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-cCCHHHH--------HHHHHHhCCCcchhh
Confidence            999999988765  7777665555568899999999984422 3333222        245677888988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.42  E-value=1.1e-12  Score=99.71  Aligned_cols=95  Identities=18%  Similarity=0.256  Sum_probs=76.5

Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  153 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      ++++.+.+.+++++|.+++|+|+.++. ++..+..|+..+..   .++|+++|+||+||.+. .....+..+.+ ...+.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~-~~~~~~~~~~~-~~~g~   98 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDD-EDMEKEQLDIY-RNIGY   98 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCC-HHHHHHHHHHH-HHCCC
Confidence            567778888999999999999999887 89999999887654   36899999999999642 22233344444 35778


Q ss_pred             eEEEEcCCCCCCHHHHHHHHH
Q 027918          154 KFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      +++++||++|.|++++|+.|.
T Consensus        99 ~v~~~SAktg~gi~eLf~~l~  119 (245)
T TIGR00157        99 QVLMTSSKNQDGLKELIEALQ  119 (245)
T ss_pred             eEEEEecCCchhHHHHHhhhc
Confidence            999999999999999998875

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00101 ureG urease accessory protein UreG

Probab=99.42  E-value=4.7e-12  Score=93.37  Aligned_cols=102  Identities=19%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      ....++++.|..-......   .-++.+|.|+|+.+.+....  .+...+.      ..=++++||+|+.+. .....+.
T Consensus        92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~-~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPM-VGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhcccc-ccccHHH
Confidence            4566778877422222221   12678999999987655321  1111221      122899999998631 1223344


Q ss_pred             HHHHHHH--hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          144 GQALADE--YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       144 ~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ..+..+.  .+.+++++|+++|.|+++++++|.+.+
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4444444  347999999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.41  E-value=1.4e-11  Score=100.56  Aligned_cols=164  Identities=19%  Similarity=0.276  Sum_probs=120.1

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      ++......+...|+|+.++|||.|++.++++.+...+..+....+....+...+....+.+.|.+-. ....+...- ..
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~  495 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA  495 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence            4445566789999999999999999999999888766666666666666666666677888887654 333322222 67


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (217)
                      +|+++++||.+++.++......++.-...  ...|+++|++|+|+.+.......+. .++++++++ +.+..|.++.-. 
T Consensus       496 cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-  571 (625)
T KOG1707|consen  496 CDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-  571 (625)
T ss_pred             eeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence            99999999999999998887765555444  3689999999999966443334344 789999997 456667664323 


Q ss_pred             HHHHHHHHHHH
Q 027918          167 EQVFFSIARDI  177 (217)
Q Consensus       167 ~~l~~~l~~~~  177 (217)
                      .++|..|..+.
T Consensus       572 ~~lf~kL~~~A  582 (625)
T KOG1707|consen  572 NELFIKLATMA  582 (625)
T ss_pred             chHHHHHHHhh
Confidence            78888777644

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.40  E-value=3.5e-12  Score=112.39  Aligned_cols=119  Identities=19%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC----------------CCcccceeeeEEEEEEEEC--------------
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------------   60 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------------   60 (217)
                      ..++..+|+|+|..++|||||+.+|+...-.                .......++......+.+.              
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3456679999999999999999999753210                0111122222222222221              


Q ss_pred             CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        61 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      +....++|+||||+..|.......++.+|++|+|+|+..+-...+...|.. +..   .++|+++++||+|..
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CCCCEEEEEECCccc
Confidence            124689999999999998888888899999999999987654443333332 222   368999999999975

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.40  E-value=2.3e-12  Score=95.92  Aligned_cols=151  Identities=19%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC------------C----cccceeeeEEEEEEEECC-------------
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT------------S----FITTIGIDFKIRTIELDG-------------   61 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~------------~----~~~~~~~~~~~~~~~~~~-------------   61 (217)
                      .......|.|+|..|+|||||+++++......            .    .....+.  ....+ .++             
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~--~~~~l-~~gcic~~~~~~~~~~   94 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGA--PAIQI-NTGKECHLDAHMVAHA   94 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCC--cEEEE-cCCCcccCChHHHHHH
Confidence            33457899999999999999999987531100            0    0000000  00000 010             


Q ss_pred             ------eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           62 ------KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        62 ------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                            ....+.|+++.|.-...   ..+....+..+.|+|..+.+..  ....   ...   ...|.++++||+|+.+.
T Consensus        95 l~~~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~---~~~---~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073        95 LEDLPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKY---PGM---FKEADLIVINKADLAEA  163 (207)
T ss_pred             HHHhccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhh---HhH---HhhCCEEEEEHHHcccc
Confidence                  01356667776621110   1111234555667777654321  1111   111   13577999999998642


Q ss_pred             CCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          136 KRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                       ............+...  .+++.+||++|.|++++++++.+.
T Consensus       164 -~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       164 -VGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -chhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence             1122233333344433  789999999999999999999774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.40  E-value=1.4e-11  Score=96.56  Aligned_cols=131  Identities=18%  Similarity=0.233  Sum_probs=92.1

Q ss_pred             eeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHhcC----
Q 027918           50 IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQHAS----  118 (217)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~~~----  118 (217)
                      +.+....+.+.+  ..+.++|.+|+..-+.-|.+++.+++++|||+++++-+       ....+..-+..+...+.    
T Consensus       183 ~GI~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F  260 (354)
T KOG0082|consen  183 TGIVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWF  260 (354)
T ss_pred             CCeeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccc
Confidence            345556666766  79999999999999999999999999999999987632       23444444444443332    


Q ss_pred             CCCcEEEEEeCCCCCCC--------------CCccChHHHHHHHHH-----h-----CCeEEEEcCCCCCCHHHHHHHHH
Q 027918          119 DNVNKVLVGNKADMDES--------------KRAVPTSKGQALADE-----Y-----GIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       119 ~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      .+.++|+++||.||..+              ......+++..+...     +     .+-.+.+.|.+-.+++.+|+.+.
T Consensus       261 ~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  261 ANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             ccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            46899999999998432              111233344333322     1     24567788999999999999999


Q ss_pred             HHHHHHhc
Q 027918          175 RDIKQRLA  182 (217)
Q Consensus       175 ~~~~~~~~  182 (217)
                      +.+....-
T Consensus       341 d~Ii~~nl  348 (354)
T KOG0082|consen  341 DTIIQNNL  348 (354)
T ss_pred             HHHHHHHH
Confidence            98876643

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.40  E-value=1.6e-11  Score=97.29  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCCCccccc--
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR--   78 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~--   78 (217)
                      ++|.++|.||+|||||+|+|.+........+.++.+.....+.+.+.+               ..+.++|+||...-.  
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            689999999999999999999987555555666666665555554321               259999999954311  


Q ss_pred             --c---hhhhcccCCcEEEEEEeCC
Q 027918           79 --T---ITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        79 --~---~~~~~~~~~d~~i~v~d~~   98 (217)
                        .   .....++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence              1   2223467899999999984

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.39  E-value=1.7e-11  Score=97.35  Aligned_cols=141  Identities=16%  Similarity=0.218  Sum_probs=89.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC----CCC------------CCcccc---eeeeEEE-----EEEEE-CCeEEEEEEe
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG----SFT------------TSFITT---IGIDFKI-----RTIEL-DGKRIKLQIW   69 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~----~~~------------~~~~~~---~~~~~~~-----~~~~~-~~~~~~~~l~   69 (217)
                      .+.|.|+|+.++|||||||+|.+.    ...            +...++   ++++...     ..+.. ++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            489999999999999999999886    222            112222   3333333     22322 4455799999


Q ss_pred             eCCCcccc--------cc------h---------------hhhccc-CCcEEEEEE-eCC-----ChhhHHHHHHHHHHH
Q 027918           70 DTAGQERF--------RT------I---------------TTAYYR-GAMGILLVY-DVT-----DESSFNNIRNWIRNI  113 (217)
Q Consensus        70 Dt~G~~~~--------~~------~---------------~~~~~~-~~d~~i~v~-d~~-----~~~s~~~~~~~~~~l  113 (217)
                      ||+|...-        ..      -               ....+. .+++.++|. |.+     .....+.-..|+..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            99993321        11      0               122344 788888887 653     112233344577777


Q ss_pred             HHhcCCCCcEEEEEeCCC-CCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918          114 EQHASDNVNKVLVGNKAD-MDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus       114 ~~~~~~~~pvivv~nK~D-l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ...   +.|+++|+|+.| ...    ...+....+..+++++++.+|+..
T Consensus       177 k~~---~kPfiivlN~~dp~~~----et~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       177 KEL---NKPFIILLNSTHPYHP----ETEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             Hhc---CCCEEEEEECcCCCCc----hhHHHHHHHHHHhCCceEEEEHHH
Confidence            665   799999999999 322    244445566677888888887753

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.4e-11  Score=95.00  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=97.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCC----C---CCCcccceeeeEEEEEEEE-------CCeEEEEEEeeCCCcccccch
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGS----F---TTSFITTIGIDFKIRTIEL-------DGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      ++++.++|.-.+|||||.++|..-.    |   ..+.....+.+.....+..       .+...++.++|+||+...-..
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            3899999999999999999996521    1   2223334444443333333       334478899999999765544


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-CCCCccC-hHHHHHHHHHh-------
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD-ESKRAVP-TSKGQALADEY-------  151 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~-~~~~~~~-~~~~~~~~~~~-------  151 (217)
                      ...-..-.|..++|+|+.-.......+-+  .+.....  ...+||+||+|+. +..+... ........+.+       
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c--~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g  162 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC--KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG  162 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc--cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence            44444567899999998754322222211  1222222  3457888998863 3222211 11222222221       


Q ss_pred             CCeEEEEcCCCC----CCHHHHHHHHHHHHHHH
Q 027918          152 GIKFFETSAKTN----LNVEQVFFSIARDIKQR  180 (217)
Q Consensus       152 ~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~~  180 (217)
                      +.|++++|+..|    +++.++.+.|...+.+.
T Consensus       163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             CCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            279999999999    66777666666665443

>cd01882 BMS1 Bms1

Probab=99.38  E-value=1.6e-11  Score=92.47  Aligned_cols=141  Identities=14%  Similarity=0.166  Sum_probs=83.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      .....|+|+|.+|+|||||++.|.+...........+. +.  .+...+  ..+.++||||..   .......+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i~~~~~--~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--VVTGKK--RRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--EEecCC--ceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            44567999999999999999999875222111111111 11  111223  578999999864   22233467899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCCcc--ChHHHHH-HHHHh--CCeEEEEcCCCCCC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKRAV--PTSKGQA-LADEY--GIKFFETSAKTNLN  165 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK~Dl~~~~~~~--~~~~~~~-~~~~~--~~~~~~~Sa~~~~~  165 (217)
                      +|+|+........ ..++..+...   +.|. ++|+||.|+.+.....  ....++. +..+.  +.+++.+||+++-.
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            9999976443222 2233334332   4674 5599999986422111  1122222 33222  36899999988743

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PTZ00416 elongation factor 2; Provisional

Probab=99.38  E-value=5.2e-12  Score=111.12  Aligned_cols=118  Identities=21%  Similarity=0.180  Sum_probs=79.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCC----------------CCcccceeeeEEEEEEEEC--------CeEEEEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT----------------TSFITTIGIDFKIRTIELD--------GKRIKLQ   67 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~--------~~~~~~~   67 (217)
                      .+...+|+|+|..++|||||+++|+...-.                .......++......+.+.        +....++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345569999999999999999999863210                0011111222222222332        1246799


Q ss_pred             EeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        68 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      |+||||+..+.......++.+|++|+|+|+..+-...+..-| ..+..   .+.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH---cCCCEEEEEEChhhh
Confidence            999999999888788888999999999999875433332223 33333   268999999999985

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.4e-11  Score=100.64  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=103.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHc-------------------------------CCCCCCcccceeeeEEEEEE
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSD-------------------------------GSFTTSFITTIGIDFKIRTI   57 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~-------------------------------~~~~~~~~~~~~~~~~~~~~   57 (217)
                      +......++.+|+|..++|||||+.+|+.                               ....+....+.+++.....+
T Consensus       171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f  250 (603)
T KOG0458|consen  171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF  250 (603)
T ss_pred             ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence            44455779999999999999999999865                               11123345555555554444


Q ss_pred             EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      .  .....++|+|+||+..|......-...+|++++|+|++..+   .|+   ..+.....++...  -..+||++||+|
T Consensus       251 e--s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD  326 (603)
T KOG0458|consen  251 E--SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMD  326 (603)
T ss_pred             e--cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeeccc
Confidence            4  44478999999999988888878888999999999998642   121   1222222223322  245688899999


Q ss_pred             CCCCC---CccChHHHHHHH-HHhC-----CeEEEEcCCCCCCHHHH
Q 027918          132 MDESK---RAVPTSKGQALA-DEYG-----IKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~---~~~~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~l  169 (217)
                      +.+=.   .......+..|. +..+     +.|+++|...|+|+-..
T Consensus       327 ~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  327 LVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            75411   112223344444 3333     57999999999987644

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.38  E-value=9.3e-14  Score=104.96  Aligned_cols=113  Identities=17%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             EEEEeeCCCcccccchhhhcc--------cCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           65 KLQIWDTAGQERFRTITTAYY--------RGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      .+.|+|||||.++...+....        ...-++++++|+..... ...+..++-.+......+.|.|.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            799999999987654443222        34557888888764432 223334444443333337999999999998652


Q ss_pred             CCcc------------------ChHHHHHHHHHh---C-C-eEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          136 KRAV------------------PTSKGQALADEY---G-I-KFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       136 ~~~~------------------~~~~~~~~~~~~---~-~-~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ....                  .....+.++.-.   + . .++.+|+.+++++.+++..+-+++
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            1000                  001111112211   2 3 799999999999999998876654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.37  E-value=6.2e-12  Score=97.27  Aligned_cols=140  Identities=19%  Similarity=0.274  Sum_probs=76.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------   77 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------   77 (217)
                      .++|+|+|.+|+|||||||.|++......          ...+..+......+.-++..+.++|+||||....       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            58999999999999999999998654322          1233344445555666788899999999992210       


Q ss_pred             -----------cch---------hhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-
Q 027918           78 -----------RTI---------TTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-  135 (217)
Q Consensus        78 -----------~~~---------~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-  135 (217)
                                 ...         ....-...|+++|+++.+... .-.++. .+..+..    .+++|-|+.|+|.... 
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~-~mk~Ls~----~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE-FMKRLSK----RVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH-HHHHHTT----TSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH-HHHHhcc----cccEEeEEecccccCHH
Confidence                       000         001114578999999986521 112222 2233332    4789999999996321 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEc
Q 027918          136 KRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      +.......+..-...+++.+|...
T Consensus       159 el~~~k~~i~~~l~~~~I~~f~f~  182 (281)
T PF00735_consen  159 ELQAFKQRIREDLEENNIKIFDFP  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHTT--S----
T ss_pred             HHHHHHHHHHHHHHHcCceeeccc
Confidence            111223334444556677665533

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.35  E-value=6.1e-12  Score=99.73  Aligned_cols=161  Identities=12%  Similarity=0.131  Sum_probs=80.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh-----h
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-----TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT-----T   82 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-----~   82 (217)
                      ...++|+|+|.+|+|||||||.|.+-.-     .++....++.+...+.. .+.  -++.+||.||..--+...     .
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~--pnv~lWDlPG~gt~~f~~~~Yl~~  109 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKF--PNVTLWDLPGIGTPNFPPEEYLKE  109 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS---TTEEEEEE--GGGSS--HHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCC--CCCeEEeCCCCCCCCCCHHHHHHH
Confidence            3468999999999999999999976221     12211112223332222 111  269999999954322222     2


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC--CCC----CCccCh----HHHHHHHHH--
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM--DES----KRAVPT----SKGQALADE--  150 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl--~~~----~~~~~~----~~~~~~~~~--  150 (217)
                      .-+...|.+|++.+..  -+..+ ..+...+.+.   +.|+++|-||+|.  .+.    ......    +.+++.+.+  
T Consensus       110 ~~~~~yD~fiii~s~r--f~~nd-v~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  110 VKFYRYDFFIIISSER--FTEND-VQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             TTGGG-SEEEEEESSS----HHH-HHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             ccccccCEEEEEeCCC--Cchhh-HHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            2345678776665532  11111 2233444444   6899999999995  111    112222    223333322  


Q ss_pred             --hC---CeEEEEcCCC--CCCHHHHHHHHHHHHHHHhc
Q 027918          151 --YG---IKFFETSAKT--NLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       151 --~~---~~~~~~Sa~~--~~~i~~l~~~l~~~~~~~~~  182 (217)
                        .+   -++|.+|+.+  ..++..|.+.|.+.+..++.
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence              23   3788999876  45788888888887766544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.34  E-value=2.5e-11  Score=101.57  Aligned_cols=124  Identities=18%  Similarity=0.179  Sum_probs=78.8

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------ch-
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TI-   80 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~-   80 (217)
                      ..+.+..++|+|+|.+|+||||++|.|++.... .......++.........++  ..+.|+||||.....      .. 
T Consensus       112 ~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeI  189 (763)
T TIGR00993       112 QDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKI  189 (763)
T ss_pred             ccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHH
Confidence            344566789999999999999999999997543 22222223333333334455  689999999966431      11 


Q ss_pred             ---hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918           81 ---TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  134 (217)
Q Consensus        81 ---~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~  134 (217)
                         ...++.  ..|++++|.+++.......-..+++.+...++..  ..+|||+|+.|...
T Consensus       190 Lk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       190 LSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence               112333  4799999988764333222334666666655422  45799999999653

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.33  E-value=8.5e-12  Score=89.75  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=45.3

Q ss_pred             EEEEeeCCCccc----ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918           65 KLQIWDTAGQER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  130 (217)
Q Consensus        65 ~~~l~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~  130 (217)
                      .+.|+||||...    ....+..++..+|++|+|.++++.-+-.+...+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            589999999643    3356777889999999999999866555555555555444   34488889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.31  E-value=1.1e-10  Score=92.05  Aligned_cols=105  Identities=17%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS  142 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~  142 (217)
                      +.+.|+||+|...-..   .....+|.++++.+...++.+..+.   ..+.     ...-++|+||+|+...... ....
T Consensus       149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHHH
Confidence            6889999999762222   2456799999997644444333222   1111     1223899999998542211 1111


Q ss_pred             HHHHHHHH-------hCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          143 KGQALADE-------YGIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       143 ~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      +.......       ...+++.+||+++.|++++++.|.+.+..
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            22222221       11479999999999999999999987653

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.31  E-value=1.3e-11  Score=90.57  Aligned_cols=151  Identities=20%  Similarity=0.239  Sum_probs=90.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------   77 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------   77 (217)
                      .++|+|+|.+|.|||||+|+|+......         ....|..+......+.-++...+++++||||....        
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            3899999999999999999998754322         22334444455555666787889999999992211        


Q ss_pred             ------------------cchhhhccc--CCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCC-CCC
Q 027918           78 ------------------RTITTAYYR--GAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-DES  135 (217)
Q Consensus        78 ------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl-~~~  135 (217)
                                        .......+.  ..|+++|.+..+. .++.-+.- ++..+..    -..|+-|+-|.|- .-+
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeecccccHH
Confidence                              111122333  3566666666543 23222211 2222222    2456777789993 223


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918          136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++....+.++.-...+++.+++-.+.+-..-+..+
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fded~ed~~l  235 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTL  235 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccccchhHHHH
Confidence            44455566666677788888887766544333333

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.5e-11  Score=101.48  Aligned_cols=160  Identities=15%  Similarity=0.155  Sum_probs=106.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC------------Ce----EEEEEEeeCCCcccccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD------------GK----RIKLQIWDTAGQERFRT   79 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~----~~~~~l~Dt~G~~~~~~   79 (217)
                      +-++|+|.-.+|||-|+..+-+..+......+.+..+....+...            ++    ---+.++||||++.|..
T Consensus       476 PIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtn  555 (1064)
T KOG1144|consen  476 PICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTN  555 (1064)
T ss_pred             ceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhh
Confidence            569999999999999999998866654444443333322222221            11    12478899999999999


Q ss_pred             hhhhcccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------ChHH-
Q 027918           80 ITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV------------PTSK-  143 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~------------~~~~-  143 (217)
                      +..+...-+|++|+|+|+...   .+++.    ++.++..   +.|+||.+||+|....-...            ...- 
T Consensus       556 lRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  556 LRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            999999999999999999764   33332    2334443   78999999999953211000            0011 


Q ss_pred             ----------HHHHHHH-h-------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          144 ----------GQALADE-Y-------------GIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       144 ----------~~~~~~~-~-------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                                +.+|+.. +             -+.++++||..|+|+.+|+.+|++.......
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~  691 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMV  691 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHH
Confidence                      1111111 0             1468899999999999999999887655433

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=3.1e-11  Score=103.12  Aligned_cols=129  Identities=17%  Similarity=0.148  Sum_probs=93.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .++.-+|.|+|..++|||||..+|+...-                  ........++......+.+.+ ...++|+||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            46677999999999999999999865210                  011233445555555666664 47999999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ  145 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~  145 (217)
                      |-+|.......++-.|++++|+|+...-....-.-|.+....    ++|.++++||+|..........++++
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~----~vp~i~fiNKmDR~~a~~~~~~~~l~  153 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY----GVPRILFVNKMDRLGADFYLVVEQLK  153 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc----CCCeEEEEECccccccChhhhHHHHH
Confidence            999999999999999999999999886544444445444333    79999999999976544443444433

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.30  E-value=4.8e-11  Score=85.33  Aligned_cols=148  Identities=18%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEE---------------EEEEEC-------------------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------------RTIELD-------------------   60 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~-------------------   60 (217)
                      .+.|.|.|++|||||+|+.+++..-.......-.+.+.+.               ..+...                   
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~   92 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL   92 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence            4799999999999999999986532211111111111111               000000                   


Q ss_pred             -CeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCCCCC
Q 027918           61 -GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDESKR  137 (217)
Q Consensus        61 -~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~~~~  137 (217)
                       .....+.|++..|+-  -. .-.+.-..+.-|+|+|....+..          -+...+.  ..=++|+||.|+.. ..
T Consensus        93 ~~~~~Dll~iEs~GNL--~~-~~sp~L~d~~~v~VidvteGe~~----------P~K~gP~i~~aDllVInK~DLa~-~v  158 (202)
T COG0378          93 DFPDLDLLFIESVGNL--VC-PFSPDLGDHLRVVVIDVTEGEDI----------PRKGGPGIFKADLLVINKTDLAP-YV  158 (202)
T ss_pred             cCCcCCEEEEecCcce--ec-ccCcchhhceEEEEEECCCCCCC----------cccCCCceeEeeEEEEehHHhHH-Hh
Confidence             001345555555521  11 11111233478888888766421          1110000  12289999999965 33


Q ss_pred             ccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          138 AVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      ..+.+.+.+-+++.+  .+++++|+++|+|++++++|+...
T Consensus       159 ~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         159 GADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             CccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            344455555555543  799999999999999999998764

>cd01900 YchF YchF subfamily

Probab=99.29  E-value=3.7e-11  Score=92.29  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=59.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------EEEEEeeCCCccccc----
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR----   78 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~----   78 (217)
                      |+++|.||+|||||+|+|.+........+.++.+.....+.+.+.+               ..+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            5799999999999999999987765556666666666666654421               359999999954311    


Q ss_pred             ch---hhhcccCCcEEEEEEeCC
Q 027918           79 TI---TTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        79 ~~---~~~~~~~~d~~i~v~d~~   98 (217)
                      .+   ....++.+|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            11   223457899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.4e-11  Score=94.09  Aligned_cols=166  Identities=17%  Similarity=0.159  Sum_probs=106.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeeeEEEEE--------------------EEE----CCeEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGIDFKIRT--------------------IEL----DGKRIK   65 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~   65 (217)
                      ...++|..+|.-.-|||||...|.+--   +++......++..-+..                    ...    ......
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            456999999999999999999997711   11111111111100000                    000    012357


Q ss_pred             EEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cC
Q 027918           66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VP  140 (217)
Q Consensus        66 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~  140 (217)
                      +.|+|.|||+-..+....-..-.|++++|++++.+    ++-+++..    +.-..  -..+|+|-||+|+...++. ..
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A----leIig--ik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA----LEIIG--IKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH----Hhhhc--cceEEEEecccceecHHHHHHH
Confidence            99999999987666554445567999999999874    34443332    33332  2467888999999653222 33


Q ss_pred             hHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhccc
Q 027918          141 TSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLADT  184 (217)
Q Consensus       141 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~  184 (217)
                      .+++++|.+.-   +.+++++||..+.|+|-+++.|.+.+.....+.
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~  208 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL  208 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence            45566665533   479999999999999999999988876554443

>smart00053 DYNc Dynamin, GTPase

Probab=99.24  E-value=1e-10  Score=88.11  Aligned_cols=68  Identities=13%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             EEEEEeeCCCcccc-------------cchhhhccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918           64 IKLQIWDTAGQERF-------------RTITTAYYR-GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK  129 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK  129 (217)
                      ..+.|+|+||....             ..+...|++ ..+++++|+|+...-.-.+...+.+.+..   .+.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~---~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP---QGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH---cCCcEEEEEEC
Confidence            57899999996421             123445666 45688899988653332222233333333   36899999999


Q ss_pred             CCCCC
Q 027918          130 ADMDE  134 (217)
Q Consensus       130 ~Dl~~  134 (217)
                      .|...
T Consensus       202 ~D~~~  206 (240)
T smart00053      202 LDLMD  206 (240)
T ss_pred             CCCCC
Confidence            99754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.24  E-value=2e-11  Score=89.05  Aligned_cols=148  Identities=22%  Similarity=0.313  Sum_probs=96.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-----chhhhcccCC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-----TITTAYYRGA   88 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~   88 (217)
                      .-||+++|.+|||||++=..++.+... .+.-.+.++++.-..+++-|. ..+++||.+|++.+-     ......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            348999999999999996666543322 444556666666666666543 689999999998542     2345688999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-CCCccChHH----HHHHHHHhCCeEEEEcCC
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-SKRAVPTSK----GQALADEYGIKFFETSAK  161 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~-~~~~~~~~~----~~~~~~~~~~~~~~~Sa~  161 (217)
                      +++++|||++..+-..++..+-..+....  .+...+.+...|.|+.. +.+....++    ...+....++.++++|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            99999999998876666665544333322  23466888899999853 222222222    222223334567777766


Q ss_pred             CC
Q 027918          162 TN  163 (217)
Q Consensus       162 ~~  163 (217)
                      +.
T Consensus       163 De  164 (295)
T KOG3886|consen  163 DE  164 (295)
T ss_pred             hH
Confidence            53

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.22  E-value=3.9e-10  Score=87.94  Aligned_cols=139  Identities=20%  Similarity=0.275  Sum_probs=86.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC----------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---cch
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS----------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---RTI   80 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~   80 (217)
                      ..++|+++|+.|+|||||+|.|++......          ..++..+..+...+.-++..+.++++||||...+   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            348999999999999999999998633221          2355556666666666888899999999993221   011


Q ss_pred             h-----------hh--------------cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           81 T-----------TA--------------YYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        81 ~-----------~~--------------~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      |           ..              .=...|+++|.+..+.- .+..+. ..+..+..    .+.+|-|+.|+|...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls~----~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLSK----RVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHhc----ccCeeeeeeccccCC
Confidence            1           11              11357888888876542 222221 12233333    356788888999632


Q ss_pred             -CCCccChHHHHHHHHHhCCeEEE
Q 027918          135 -SKRAVPTSKGQALADEYGIKFFE  157 (217)
Q Consensus       135 -~~~~~~~~~~~~~~~~~~~~~~~  157 (217)
                       +......+.+......+++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence             22333445566666777888874

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.21  E-value=1.6e-10  Score=90.70  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TS  142 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~  142 (217)
                      +.+.|+||+|....   .......+|.++++....   +.+++......+.     +.|.++|+||+|+........ ..
T Consensus       127 ~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       127 YDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHH
Confidence            67899999985421   223456678777774433   3344444333332     467899999999864321100 00


Q ss_pred             ----HHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          143 ----KGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       143 ----~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                          ....+...   ...+++.+||+++.|+++++++|.+...
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                00111111   1236899999999999999999988744

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.21  E-value=2.2e-11  Score=93.11  Aligned_cols=154  Identities=16%  Similarity=0.142  Sum_probs=104.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~   83 (217)
                      ..-.-|.|+|..|+||||||+.|......+...-+.+.+........... -.+.+.||-|.-         .|++. ..
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~AT-Le  253 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQAT-LE  253 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHH-HH
Confidence            34468999999999999999999977666665666666666666555433 368889999933         23332 22


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN----KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p----vivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      ....+|+++.|.|+++|..-......+..+....-...|    ++=|=||+|.......         ..+++  -+.+|
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~is  322 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGIS  322 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc---------cccCC--ccccc
Confidence            456899999999999998766555566666555322222    3556688886332111         11222  46889


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (217)
                      +.+|+|++++.+.+-..+..
T Consensus       323 altgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             cccCccHHHHHHHHHHHhhh
Confidence            99999999998887776654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8.6e-10  Score=86.54  Aligned_cols=85  Identities=16%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC----------------CeEEEEEEeeCCCccc--
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----------------GKRIKLQIWDTAGQER--   76 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~Dt~G~~~--   76 (217)
                      -+++.|+|.||+|||||+|.+..........|..|++...-.+.+.                -....+.|+|.+|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            3789999999999999999999988766777888888776665541                1236799999998432  


Q ss_pred             -----ccchhhhcccCCcEEEEEEeCCC
Q 027918           77 -----FRTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        77 -----~~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                           .......-++.+|+++.|+++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence                 22334445689999999999763

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=6.3e-10  Score=87.37  Aligned_cols=143  Identities=20%  Similarity=0.260  Sum_probs=86.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------   77 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------   77 (217)
                      .+.++++|+.|.|||||||.|+...+..         ....+..+......+.-+|..++++++||||....        
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            4899999999999999999998864432         23334455555555666788899999999992211        


Q ss_pred             ----------c-------chhhhcc--cCCcEEEEEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-C
Q 027918           78 ----------R-------TITTAYY--RGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-K  136 (217)
Q Consensus        78 ----------~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~-~  136 (217)
                                .       .+.+.-+  ...|+++|.+..+.- .+..+.- ....+..    .+.+|-|+.|.|.... .
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~~----~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLSK----KVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHhc----cccccceeeccccCCHHH
Confidence                      0       0111122  267888888887542 1211111 2222222    4677888889996331 2


Q ss_pred             CccChHHHHHHHHHhCCeEEEEcCCC
Q 027918          137 RAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      .......+...+...++++|......
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceecCCCCc
Confidence            22334445555666677766554443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=8e-10  Score=88.02  Aligned_cols=152  Identities=22%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC---CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF---TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      -|+-.|.-.-|||||+..+.+..-   .+....+.+++.....+...+  ..+.|+|.||++++-.....-+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d--~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED--GVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC--CceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            577889999999999999988543   345566777777777776665  489999999999887777777788999999


Q ss_pred             EEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH---hCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE---YGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~---~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~  167 (217)
                      |++.++.   ++.+.+.     +.+... ....++|+||+|..++.+  ..+.++.....   ...++|.+|+++|.|++
T Consensus        80 vV~~deGl~~qtgEhL~-----iLdllg-i~~giivltk~D~~d~~r--~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~  151 (447)
T COG3276          80 VVAADEGLMAQTGEHLL-----ILDLLG-IKNGIIVLTKADRVDEAR--IEQKIKQILADLSLANAKIFKTSAKTGRGIE  151 (447)
T ss_pred             EEeCccCcchhhHHHHH-----HHHhcC-CCceEEEEeccccccHHH--HHHHHHHHHhhcccccccccccccccCCCHH
Confidence            9999754   3333332     122222 134589999999866321  12222222222   23688999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          168 QVFFSIARDIK  178 (217)
Q Consensus       168 ~l~~~l~~~~~  178 (217)
                      ++.+.|.+..-
T Consensus       152 ~Lk~~l~~L~~  162 (447)
T COG3276         152 ELKNELIDLLE  162 (447)
T ss_pred             HHHHHHHHhhh
Confidence            99999988874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.14  E-value=1.9e-09  Score=87.77  Aligned_cols=124  Identities=16%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             EEEEEEEE-CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHHh----cCC
Q 027918           52 FKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-------SFNNIRNWIRNIEQH----ASD  119 (217)
Q Consensus        52 ~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~l~~~----~~~  119 (217)
                      +....+.+ ++  ..+.++|++|+..-+.-|.+++.+++++|||+++++-+       ....+..-+..+...    .-.
T Consensus       225 i~e~~f~~~~~--~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~  302 (389)
T PF00503_consen  225 ITEIDFNFSGS--RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK  302 (389)
T ss_dssp             EEEEEEEE-TT--EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred             eeEEEEEeecc--cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence            44455556 55  78999999999999999999999999999999986521       122333333333222    224


Q ss_pred             CCcEEEEEeCCCCC-----CCC----------Cc--cChHHHHHHHHHh------------CCeEEEEcCCCCCCHHHHH
Q 027918          120 NVNKVLVGNKADMD-----ESK----------RA--VPTSKGQALADEY------------GIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       120 ~~pvivv~nK~Dl~-----~~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +.|+||++||.|+.     ...          ..  ...+.+..|....            .+.++.++|.+..++..+|
T Consensus       303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~  382 (389)
T PF00503_consen  303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF  382 (389)
T ss_dssp             TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred             cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence            78999999999962     111          11  2334444443321            1356789999989999999


Q ss_pred             HHHHHHH
Q 027918          171 FSIARDI  177 (217)
Q Consensus       171 ~~l~~~~  177 (217)
                      +.+.+.+
T Consensus       383 ~~v~~~i  389 (389)
T PF00503_consen  383 NAVKDII  389 (389)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCcC
Confidence            8887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=7.6e-10  Score=91.91  Aligned_cols=116  Identities=26%  Similarity=0.274  Sum_probs=84.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------------cccceeeeEEEEEEE---ECCeEEEEEEeeCC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----------------FITTIGIDFKIRTIE---LDGKRIKLQIWDTA   72 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~---~~~~~~~~~l~Dt~   72 (217)
                      +...+|.++|.-+.|||+|+..|........                 ...+.++.....++.   .+++..-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            4567899999999999999999976543221                 111222222222322   25667889999999


Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  132 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl  132 (217)
                      ||..+.......++.+|++++|+|+...-++..-+-+    ......+.|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~i----khaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERII----KHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHH----HHHHhccCcEEEEEehhHH
Confidence            9999999888899999999999999877655443332    3333347999999999995

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.09  E-value=1.2e-09  Score=84.13  Aligned_cols=54  Identities=20%  Similarity=0.137  Sum_probs=38.1

Q ss_pred             CcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          121 VNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       121 ~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      .+-++|+||+|+... .....+......+..  ..+++.+|+++|+|++++++||..
T Consensus       231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            455999999998541 112233333333333  378999999999999999999876

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=6.4e-09  Score=78.88  Aligned_cols=143  Identities=19%  Similarity=0.190  Sum_probs=91.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC----------------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      ...++|..+|.-+-|||||...+..-                ..++....  ++.+....+.+.-....+..+|+||+..
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~r--GITIntahveyet~~rhyahVDcPGHaD   87 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhc--CceeccceeEEecCCceEEeccCCChHH
Confidence            45799999999999999997776431                11122222  3444444454543446889999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCccC--hHHHHHHHHHhC-
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVP--TSKGQALADEYG-  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~-  152 (217)
                      |-.....-..++|+.|+|+++.+......-.-.  .+.+..  +.| +++++||+|+.++..-..  ..+..++..+++ 
T Consensus        88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarqv--Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQV--GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhhc--CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            987776667789999999999985432222211  122222  455 456679999976433222  334556666665 


Q ss_pred             ----CeEEEEcCC
Q 027918          153 ----IKFFETSAK  161 (217)
Q Consensus       153 ----~~~~~~Sa~  161 (217)
                          .|++.-||.
T Consensus       164 ~gd~~Pii~gSal  176 (394)
T COG0050         164 PGDDTPIIRGSAL  176 (394)
T ss_pred             CCCCcceeechhh
Confidence                467777764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.00  E-value=8.4e-10  Score=82.80  Aligned_cols=154  Identities=18%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCC-----------CCCCccc---------------ceeeeEEEEEEEECCe-----
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGS-----------FTTSFIT---------------TIGIDFKIRTIELDGK-----   62 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~~-----   62 (217)
                      +.+.|.|.|+||+|||||++.|...-           ++++...               ......+...+-..+.     
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            35799999999999999999985410           0010000               0011222222222111     


Q ss_pred             -------------EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 027918           63 -------------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK  129 (217)
Q Consensus        63 -------------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK  129 (217)
                                   .+.+.|++|.|.-.   .-.....-+|.+++|......+...-++.-+-++.        =++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence                         14667777766311   11223456899999999877766555554333332        2899999


Q ss_pred             CCCCCCCCccChHHHHHHHHH-----h--CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          130 ADMDESKRAVPTSKGQALADE-----Y--GIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      .|.+...  ....+.+.....     .  ..+++.+||.++.|++++++.|.++....
T Consensus       177 aD~~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  177 ADRPGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             -SHHHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CChHHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            9963311  111222222211     1  14899999999999999999988765443

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01855 YqeH YqeH

Probab=99.00  E-value=3.2e-09  Score=77.99  Aligned_cols=94  Identities=20%  Similarity=0.194  Sum_probs=65.0

Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHh
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEY  151 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~  151 (217)
                      +..++..+++++|++++|+|+.++...     |...+.... .+.|+++|+||+|+...  .........+.     ...
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHhhc
Confidence            567788899999999999999875421     222222222 35899999999998542  22233333333     223


Q ss_pred             CC---eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          152 GI---KFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       152 ~~---~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +.   .++.+||++|.|++++++.|.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            32   6899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.99  E-value=5.2e-09  Score=83.42  Aligned_cols=92  Identities=18%  Similarity=0.249  Sum_probs=66.5

Q ss_pred             chhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027918           79 TITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE  157 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (217)
                      .+.+..+.++|.+++|+|+.++. ....+..|+..+..   .++|+++|+||+||.....   ...........+..++.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~---~~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE---QQQWQDRLQQWGYQPLF  154 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH---HHHHHHHHHhcCCeEEE
Confidence            34455688999999999998775 44456777665533   3689999999999853211   12222333456788999


Q ss_pred             EcCCCCCCHHHHHHHHHHH
Q 027918          158 TSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~  176 (217)
                      +||.++.|++++++.|...
T Consensus       155 iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEcCCCCCHHHHhhhhccc
Confidence            9999999999999888643

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=6.5e-09  Score=82.77  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc--CCC--------------C------CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD--GSF--------------T------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~--~~~--------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      -..+|+-.|.+|||||-.+|+-  +..              .      .....+..+...+..+.+++  ..++|.||||
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~--~~iNLLDTPG   90 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD--CLVNLLDTPG   90 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC--eEEeccCCCC
Confidence            4678999999999999998753  100              0      01222333334444445555  7899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  153 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      |+.|..-..+.+.-+|.++.|+|+.-.--.. ..++++-.+.   .++||+=++||.|...   ....+.+.++.+.+++
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KLfeVcrl---R~iPI~TFiNKlDR~~---rdP~ELLdEiE~~L~i  163 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKLFEVCRL---RDIPIFTFINKLDREG---RDPLELLDEIEEELGI  163 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHH-HHHHHHHHhh---cCCceEEEeecccccc---CChHHHHHHHHHHhCc
Confidence            9999988888888999999999986532211 1222222222   3799999999999632   3345555566666554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.97  E-value=4.1e-09  Score=82.19  Aligned_cols=88  Identities=15%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             hhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC
Q 027918           82 TAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                      ...+.++|.+++|+|+.++. ++..+..|+..+...   +.|+++|+||+|+.+.   ........+....+.+++.+||
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~---~~~~~~~~~~~~~g~~v~~vSA  146 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDD---EEEELELVEALALGYPVLAVSA  146 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCCh---HHHHHHHHHHHhCCCeEEEEEC
Confidence            33578999999999999887 778888888776653   6899999999998542   1112223334456789999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIAR  175 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~  175 (217)
                      +++.|+++++..|..
T Consensus       147 ~~g~gi~~L~~~L~~  161 (287)
T cd01854         147 KTGEGLDELREYLKG  161 (287)
T ss_pred             CCCccHHHHHhhhcc
Confidence            999999999887763

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01859 MJ1464 MJ1464

Probab=98.97  E-value=3.3e-09  Score=75.36  Aligned_cols=94  Identities=21%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEE
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFE  157 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (217)
                      +.++++.++++|++++|+|+.++..... ..+...+..   .+.|+++|+||+|+....   .......+....+.+++.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~---~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~   75 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE---LGKKLLIVLNKADLVPKE---VLEKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh---CCCcEEEEEEhHHhCCHH---HHHHHHHHHHhCCCcEEE
Confidence            4567778889999999999987643222 122222222   257999999999984311   111111233345578999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHH
Q 027918          158 TSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +||+++.|++++++.|.+.+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=4.3e-09  Score=77.68  Aligned_cols=165  Identities=20%  Similarity=0.261  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---hhhhcccCCcEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMGIL   92 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~~i   92 (217)
                      ++|+++|...+||||+-...+....+.. +-..+-......-.+.+.-+.+.+||.||+..+-.   -....++...++|
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            6799999999999999888776543221 11111000111112233448999999999876432   2356789999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccC-hHHH-----HHHHH----HhCCeEEEEcC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVP-TSKG-----QALAD----EYGIKFFETSA  160 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~-~~~~-----~~~~~----~~~~~~~~~Sa  160 (217)
                      ||+|+.+. ..+.+..+...+.+..  ..++.+=+++.|.|...+...+. ...+     .+++.    ...+.++.+|.
T Consensus       107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            99999753 3344444444443332  23567778899999643222222 1111     11111    12357788888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 027918          161 KTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      .+ ..+-|.|..+++.+.++.+.
T Consensus       186 yD-HSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  186 YD-HSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             cc-hHHHHHHHHHHHHHhhhchh
Confidence            76 47889999999888876543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.95  E-value=6.6e-09  Score=82.79  Aligned_cols=88  Identities=18%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      ..++|.+++|++.....++..+..|+..+..   .++|+++|+||+|+...................+.+++.+||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999877888999999876543   3689999999999954221111122223344567899999999999


Q ss_pred             CHHHHHHHHHH
Q 027918          165 NVEQVFFSIAR  175 (217)
Q Consensus       165 ~i~~l~~~l~~  175 (217)
                      |++++++.|..
T Consensus       195 GideL~~~L~~  205 (347)
T PRK12288        195 GLEELEAALTG  205 (347)
T ss_pred             CHHHHHHHHhh
Confidence            99999988865

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.93  E-value=5.1e-09  Score=85.35  Aligned_cols=159  Identities=25%  Similarity=0.443  Sum_probs=114.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+|+.|+|..++|||+|+.+++...+.....+- + ..+...+..++....+.+.|.+|..     ...|-..+|++|||
T Consensus        30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv  102 (749)
T KOG0705|consen   30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-G-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV  102 (749)
T ss_pred             hhheeeeecccCCceeeeeeeccceeccccCCc-C-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence            489999999999999999999988776543332 2 2344555566666788888888732     33455678999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |...+..+++.+..+...+..+. ...+|+++++++.-... ..+.+...+...++..+ .+.+|++.+.+|.++...|.
T Consensus       103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~  182 (749)
T KOG0705|consen  103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ  182 (749)
T ss_pred             EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence            99999999998888766664333 34688888888743321 12334444444444444 47899999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          172 SIARDIKQR  180 (217)
Q Consensus       172 ~l~~~~~~~  180 (217)
                      .+...+...
T Consensus       183 ~~~~k~i~~  191 (749)
T KOG0705|consen  183 EVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHH
Confidence            988877655

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.2e-08  Score=79.71  Aligned_cols=126  Identities=21%  Similarity=0.256  Sum_probs=83.7

Q ss_pred             ccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccc-eeeeEEEEEEEECCe----------------------
Q 027918            6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITT-IGIDFKIRTIELDGK----------------------   62 (217)
Q Consensus         6 ~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------------------   62 (217)
                      +......+..+-|+++|+=..||||+|+.|+...+.....-. .++++....+.-+..                      
T Consensus        49 ~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~F  128 (532)
T KOG1954|consen   49 ALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKF  128 (532)
T ss_pred             cccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhh
Confidence            334556677889999999999999999999998876432211 122333332222111                      


Q ss_pred             -----------------EEEEEEeeCCCccc-----------ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027918           63 -----------------RIKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE  114 (217)
Q Consensus        63 -----------------~~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  114 (217)
                                       --.++|+||||.-+           |......|...+|.+|++||+.--+-..+....+..++
T Consensus       129 G~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk  208 (532)
T KOG1954|consen  129 GNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK  208 (532)
T ss_pred             HHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh
Confidence                             12689999999332           33445668889999999999865544445555555554


Q ss_pred             HhcCCCCcEEEEEeCCCCCC
Q 027918          115 QHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus       115 ~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .+   .-.+-||.||.|..+
T Consensus       209 G~---EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  209 GH---EDKIRVVLNKADQVD  225 (532)
T ss_pred             CC---cceeEEEeccccccC
Confidence            43   456789999999765

>PRK00098 GTPase RsgA; Reviewed

Probab=98.90  E-value=7.4e-09  Score=81.20  Aligned_cols=86  Identities=17%  Similarity=0.181  Sum_probs=63.3

Q ss_pred             cccCCcEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ...++|.+++|+|+.++.... .+..|+..+..   .++|+++|+||+|+.+. . .............+.+++.+||++
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~-~-~~~~~~~~~~~~~g~~v~~vSA~~  151 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDD-L-EEARELLALYRAIGYDVLELSAKE  151 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCC-H-HHHHHHHHHHHHCCCeEEEEeCCC
Confidence            358999999999998876543 34667766654   26899999999998531 1 112233344556678999999999


Q ss_pred             CCCHHHHHHHHH
Q 027918          163 NLNVEQVFFSIA  174 (217)
Q Consensus       163 ~~~i~~l~~~l~  174 (217)
                      +.|++++++.|.
T Consensus       152 g~gi~~L~~~l~  163 (298)
T PRK00098        152 GEGLDELKPLLA  163 (298)
T ss_pred             CccHHHHHhhcc
Confidence            999999988764

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.90  E-value=8.9e-09  Score=78.48  Aligned_cols=109  Identities=21%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--h
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--T  141 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~  141 (217)
                      +.+.|++|.|.-..   --.....+|.+++|.-..-.+...-++.-+-++.        =++|+||.|.........  .
T Consensus       144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~l~  212 (323)
T COG1703         144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARELR  212 (323)
T ss_pred             CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHHHH
Confidence            45667777663211   1223456788887766655555554444333332        289999999643211100  0


Q ss_pred             HHHH---HHHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918          142 SKGQ---ALADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       142 ~~~~---~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      ....   +.....+  .+++.+||.+|+|++++++.+.++.......
T Consensus       213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~s  259 (323)
T COG1703         213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTES  259 (323)
T ss_pred             HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhc
Confidence            0011   1112223  3799999999999999999998887655444

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.89  E-value=5e-09  Score=78.84  Aligned_cols=157  Identities=20%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc-ceeeeEEEEEEEECCeEEEEEEeeCCCcc----------cccch
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTI   80 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~   80 (217)
                      .+..++++++|.+|+|||+|+|.+...+..-.... ..+.......+.++.   .+.++|.||-.          .+..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence            35568999999999999999999987654322222 223222223333333   78899999911          12233


Q ss_pred             hhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---ccChHHHHH----H---
Q 027918           81 TTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR---AVPTSKGQA----L---  147 (217)
Q Consensus        81 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~---~~~~~~~~~----~---  147 (217)
                      ...|+.+   .--+++++|++-+-.-.+.. .++.+.+   .++|+.+|+||+|......   .-....+..    +   
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~-~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVPIQPTDNP-EIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCCCCCCChH-HHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            3334432   23355566665432111111 1122233   3899999999999632211   000111111    1   


Q ss_pred             HHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          148 ADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      ......+|+.+|+.++.|+++++-.+.+
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhh
Confidence            1222357889999999999988655443

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.89  E-value=1e-08  Score=80.30  Aligned_cols=156  Identities=15%  Similarity=0.201  Sum_probs=95.0

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------CcccceeeeEEEEEEEEC------
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-----------------------SFITTIGIDFKIRTIELD------   60 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~------   60 (217)
                      .+.--.++++|+|...+|||||+-.|..+..+.                       ......+.+.....+.+.      
T Consensus       162 ~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taE  241 (591)
T KOG1143|consen  162 SQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAE  241 (591)
T ss_pred             cccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHH
Confidence            333456899999999999999988875532211                       011111222222222221      


Q ss_pred             ----CeEEEEEEeeCCCcccccchhhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           61 ----GKRIKLQIWDTAGQERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        61 ----~~~~~~~l~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                          .....++|+|.+|+.+|.....+-+.  ..|.+++|++++..-++.. ++-+-.+...   ++|++++++|+|+.+
T Consensus       242 Ei~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  242 EIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVD  317 (591)
T ss_pred             HHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeecccc
Confidence                11246899999999999877665554  4688899999887644322 2222233333   799999999999865


Q ss_pred             CCC-----------------------ccChHHHHHHHH----HhCCeEEEEcCCCCCCHHHH
Q 027918          135 SKR-----------------------AVPTSKGQALAD----EYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       135 ~~~-----------------------~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ...                       .-..+++-..+.    .+-.|+|.+|+.+|+|++-+
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence            311                       011222222222    22358999999999998754

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.87  E-value=2.4e-08  Score=78.42  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC--------------CcccceeeeEEEEEEEECCe-----------
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT--------------SFITTIGIDFKIRTIELDGK-----------   62 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-----------   62 (217)
                      ..+.....+.|.+.|.-+.|||||+-.|.-...+.              ......+-+.....+-+++.           
T Consensus       110 ~~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~  189 (527)
T COG5258         110 KTEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDE  189 (527)
T ss_pred             cccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccH
Confidence            34455677999999999999999988875432211              01111111222222222111           


Q ss_pred             ----------EEEEEEeeCCCcccccchhhh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918           63 ----------RIKLQIWDTAGQERFRTITTA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  130 (217)
Q Consensus        63 ----------~~~~~l~Dt~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~  130 (217)
                                ..-+.|+||.|++.|-.....  +-.+.|..++++.+++.-+.- .++-   +--......|+|+++||+
T Consensus       190 aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEH---Lgi~~a~~lPviVvvTK~  265 (527)
T COG5258         190 AEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEH---LGIALAMELPVIVVVTKI  265 (527)
T ss_pred             HHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHh---hhhhhhhcCCEEEEEEec
Confidence                      136889999999987654332  335789999999998865421 1111   111112269999999999


Q ss_pred             CCCCCCC-ccChHHHHHH----------------------HHHhC---CeEEEEcCCCCCCHHHHHHHH
Q 027918          131 DMDESKR-AVPTSKGQAL----------------------ADEYG---IKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus       131 Dl~~~~~-~~~~~~~~~~----------------------~~~~~---~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |+.++.+ .-..+++..+                      +.+.+   .|+|.+|+.+|+|++-+.+.+
T Consensus       266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence            9865421 1111222221                      11111   589999999999987655443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.1e-08  Score=71.53  Aligned_cols=53  Identities=25%  Similarity=0.268  Sum_probs=38.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      +++++|.+|+|||||+|+|.+..... ...+..  +.....+..++   .+.||||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGK--TKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCc--ccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999876542 222222  33334444544   5899999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.81  E-value=3.9e-07  Score=67.92  Aligned_cols=155  Identities=18%  Similarity=0.149  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~   88 (217)
                      -+|+++|.|.+|||||+..+..-.........++.+.-.-.+.+++  ..+++.|.||.-+-.       .......+.+
T Consensus        63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArta  140 (364)
T KOG1486|consen   63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTA  140 (364)
T ss_pred             eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecc
Confidence            6899999999999999999988665554455555666667777887  689999999954322       2334466889


Q ss_pred             cEEEEEEeCCChhhHH-HHHHHHHHHHHhcCCCCcEEEEE-eCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918           89 MGILLVYDVTDESSFN-NIRNWIRNIEQHASDNVNKVLVG-NKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAK  161 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~pvivv~-nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (217)
                      |.++.|.|++..+.-. .+..-+..+--......|-|-+- .|.....     +-.......++....++.+.--++--+
T Consensus       141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R  220 (364)
T KOG1486|consen  141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR  220 (364)
T ss_pred             cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence            9999999998754322 23333444432222334544433 3332211     011233445555555554432222223


Q ss_pred             CCCCHHHHHHH
Q 027918          162 TNLNVEQVFFS  172 (217)
Q Consensus       162 ~~~~i~~l~~~  172 (217)
                      +...++++.+-
T Consensus       221 eD~t~DdfIDv  231 (364)
T KOG1486|consen  221 EDCTVDDFIDV  231 (364)
T ss_pred             cCCChHHHHHH
Confidence            44444554443

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.79  E-value=2e-08  Score=72.37  Aligned_cols=56  Identities=21%  Similarity=0.354  Sum_probs=40.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      ...++|+|+|.||+|||||+|+|.+... .....++.+....  .+..+.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~--~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQ--EVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceE--EEEeCC---CEEEEECcC
Confidence            4458999999999999999999998665 3444555544333  333333   688999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.78  E-value=3.8e-08  Score=79.18  Aligned_cols=95  Identities=23%  Similarity=0.303  Sum_probs=68.6

Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHHH
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALAD  149 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~----~~~~  149 (217)
                      .+.|..+...+++.++++++|+|+.+..     ..|...+.+... +.|+++|+||+|+..  .....+...    .+++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~--k~~~~~~~~~~l~~~~k  121 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLP--KSVNLSKIKEWMKKRAK  121 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCC--CCCCHHHHHHHHHHHHH
Confidence            4567777888889999999999997654     224455554433 579999999999854  222233333    3455


Q ss_pred             HhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918          150 EYGI---KFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       150 ~~~~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      ..++   .++.+||++|.|++++++.|.+.
T Consensus       122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            5665   48999999999999999998654

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.75  E-value=3.8e-08  Score=73.54  Aligned_cols=127  Identities=15%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             eEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh-------hhHHHHHHHHHHHHHhc----CC
Q 027918           51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE-------SSFNNIRNWIRNIEQHA----SD  119 (217)
Q Consensus        51 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~l~~~~----~~  119 (217)
                      .+....+.++.  ++++.+|.+|+..-+.-|...+.+..++|||+..+.-       .+-+.+...++.+...+    -.
T Consensus       191 GIfet~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~  268 (379)
T KOG0099|consen  191 GIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR  268 (379)
T ss_pred             ceeeEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence            34555556655  7899999999999999999999999999999987652       12233333333333222    12


Q ss_pred             CCcEEEEEeCCCCCCCC---------------------------CccCh--HHHHHHHHH-------------hCCeEEE
Q 027918          120 NVNKVLVGNKADMDESK---------------------------RAVPT--SKGQALADE-------------YGIKFFE  157 (217)
Q Consensus       120 ~~pvivv~nK~Dl~~~~---------------------------~~~~~--~~~~~~~~~-------------~~~~~~~  157 (217)
                      -+.+|+++||.|+....                           ....+  ..++.|.+.             +-+-+.+
T Consensus       269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF  348 (379)
T KOG0099|consen  269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  348 (379)
T ss_pred             hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence            46789999999973210                           00000  111112111             0144678


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHH
Q 027918          158 TSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      +.|.+-+++..+|....+.+..
T Consensus       349 TcAvDTenIrrVFnDcrdiIqr  370 (379)
T KOG0099|consen  349 TCAVDTENIRRVFNDCRDIIQR  370 (379)
T ss_pred             eEeechHHHHHHHHHHHHHHHH
Confidence            8899999999999887666543

>cd01858 NGP_1 NGP-1

Probab=98.74  E-value=3.6e-08  Score=70.11  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=37.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .++|+++|.+|+|||||+|+|.+.... ....+..+..  ...+..+.   .+.++||||
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            478999999999999999999986543 3333433322  22233332   478999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.72  E-value=4.7e-08  Score=77.83  Aligned_cols=83  Identities=17%  Similarity=0.031  Sum_probs=61.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccc---
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER---   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~---   76 (217)
                      +++.|+|.|++|||||++.|.+... .....+..+.+.....+.+.+.               ...+.+.|.||...   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999999876 5444566666666666655442               24689999999543   


Q ss_pred             ----ccchhhhcccCCcEEEEEEeCC
Q 027918           77 ----FRTITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        77 ----~~~~~~~~~~~~d~~i~v~d~~   98 (217)
                          ........++.+|++++|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                2223445678999999999985

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.1e-07  Score=78.74  Aligned_cols=116  Identities=19%  Similarity=0.133  Sum_probs=80.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      +..-+|.+.-.-.+||||+-++.+...-                  ........++......+.+.  ...++++|||||
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~--~~~iNiIDTPGH  114 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWR--DYRINIIDTPGH  114 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeec--cceeEEecCCCc
Confidence            3445799999999999999988754210                  01112222333333333344  479999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ..|.-.....++-.|++++|+++..+---.....|.+.- ++   +.|.|.++||+|...
T Consensus       115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-ry---~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-RY---NVPRICFINKMDRMG  170 (721)
T ss_pred             eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-hc---CCCeEEEEehhhhcC
Confidence            999998899999999999999987754444445554433 33   789999999999643

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.69  E-value=1.5e-07  Score=86.18  Aligned_cols=113  Identities=20%  Similarity=0.231  Sum_probs=72.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC------cccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhh
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITT   82 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~   82 (217)
                      =.+|+|++|+||||+|+.- +-.+.-.      ...+.+.+. ...+.+.+   .-.++||+|..        .....|.
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~  187 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWL  187 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHH
Confidence            3799999999999999987 3333211      111111111 23334444   45589999932        1223454


Q ss_pred             hcc---------cCCcEEEEEEeCCCh-----h----hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           83 AYY---------RGAMGILLVYDVTDE-----S----SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        83 ~~~---------~~~d~~i~v~d~~~~-----~----s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .++         +-.+++|+++|+.+-     +    ....++..+.++....+...||+||+||+|+..
T Consensus       188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            443         348999999997542     1    124555667777777777899999999999754

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.68  E-value=8.4e-08  Score=74.26  Aligned_cols=86  Identities=19%  Similarity=0.165  Sum_probs=66.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC---------------eEEEEEEeeCCCcccc-
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG---------------KRIKLQIWDTAGQERF-   77 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~Dt~G~~~~-   77 (217)
                      +.++|.|||.|++|||||+|.|.+........|..+++.....+.+..               ....++++|++|.-.- 
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            668999999999999999999999988888888888888877766522               2468999999984321 


Q ss_pred             ------cchhhhcccCCcEEEEEEeCCC
Q 027918           78 ------RTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        78 ------~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                            ..-....++.+|+++-|+++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                  1223335678999999988654

>cd01856 YlqF YlqF

Probab=98.65  E-value=1.1e-07  Score=68.54  Aligned_cols=57  Identities=23%  Similarity=0.299  Sum_probs=39.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      ...++++++|.+|+|||||+|+|.+..+. ....+..+..  ...+..+   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~--~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKG--IQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEee--eEEEEec---CCEEEEECCCC
Confidence            34579999999999999999999987653 2223333333  3333443   35889999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.65  E-value=1.3e-07  Score=73.84  Aligned_cols=58  Identities=28%  Similarity=0.329  Sum_probs=42.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ...++|+|+|.||+|||||+|+|.+... .....++.+...  ..+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            4568999999999999999999998765 344455554443  3344443   58899999964

>cd01858 NGP_1 NGP-1

Probab=98.65  E-value=1.3e-07  Score=67.23  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      .+.++|++++|+|+.++... ....+...+... ..+.|+++|+||+|+....  ........+........+.+||+.+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~--~~~~~~~~~~~~~~~~~~~iSa~~~   80 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW--VTARWVKILSKEYPTIAFHASINNP   80 (157)
T ss_pred             hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH--HHHHHHHHHhcCCcEEEEEeecccc
Confidence            46789999999999886421 112223333332 2258999999999985321  1111222222222234578999999


Q ss_pred             CCHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDI  177 (217)
Q Consensus       164 ~~i~~l~~~l~~~~  177 (217)
                      .|++++++.|.+..
T Consensus        81 ~~~~~L~~~l~~~~   94 (157)
T cd01858          81 FGKGSLIQLLRQFS   94 (157)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.64  E-value=3.6e-06  Score=58.73  Aligned_cols=147  Identities=18%  Similarity=0.236  Sum_probs=80.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCC-Ccc--------------cc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA-GQE--------------RF   77 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~--------------~~   77 (217)
                      ...++|.|.|+||+|||||+.++.+.--... ..-  ..+....+.-+++.+-|.++|+. |..              +|
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv--gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY   79 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV--GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY   79 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee--eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence            3568999999999999999998875322211 111  23455566677888888888887 311              11


Q ss_pred             c-----------chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH
Q 027918           78 R-----------TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA  146 (217)
Q Consensus        78 ~-----------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~  146 (217)
                      .           ......+..+|++  ++|---+-- -....+...+......+.|+|.++.+.+. +       .-.+.
T Consensus        80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr-~-------P~v~~  148 (179)
T COG1618          80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSR-H-------PLVQR  148 (179)
T ss_pred             EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccC-C-------hHHHH
Confidence            0           1122344556643  445332211 11222444444444456888888876652 1       22223


Q ss_pred             HHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          147 LADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      +.. .+--+++   .+..|=+.++..+.+.+
T Consensus       149 ik~-~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         149 IKK-LGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hhh-cCCEEEE---EccchhhHHHHHHHHHh
Confidence            322 3333333   35555567777777655

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.64  E-value=1e-07  Score=74.00  Aligned_cols=57  Identities=25%  Similarity=0.351  Sum_probs=41.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      ...++|+|+|.||+|||||+|+|.+.... ....++.+...  ..+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence            34689999999999999999999986643 33344444333  3344443   5799999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01855 YqeH YqeH

Probab=98.64  E-value=6.2e-08  Score=71.14  Aligned_cols=53  Identities=28%  Similarity=0.383  Sum_probs=37.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .+++++|.+|+|||||+|.|.+...         .....++++  .....+.++.   .+.|+||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence            5899999999999999999997542         223334433  3334444443   579999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=1.6e-07  Score=79.47  Aligned_cols=117  Identities=18%  Similarity=0.184  Sum_probs=81.5

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTA   72 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   72 (217)
                      +...++.-+|+++-.-.-|||||+..|....-                ......+.++....+.  .-.+...++++|+|
T Consensus         3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is--~~~~~~~~nlidsp   80 (887)
T KOG0467|consen    3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAIS--LLHKDYLINLIDSP   80 (887)
T ss_pred             CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccc--cccCceEEEEecCC
Confidence            34556778999999999999999999865321                1112223333332222  22234789999999


Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ||..|.+......+-+|++++++|+...-...+..-+    ++...++...++|+||+|
T Consensus        81 ghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vl----rq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   81 GHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVL----RQAWIEGLKPILVINKID  135 (887)
T ss_pred             CccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHH----HHHHHccCceEEEEehhh
Confidence            9999999998888899999999999876544433332    222223567899999999

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=8.1e-09  Score=81.86  Aligned_cols=132  Identities=17%  Similarity=0.210  Sum_probs=92.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC--------CCCCC--------cccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS--------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      .-+|.|+..-.+||||.-.+++.-        .++..        ....-++.+....+.++.+...++++||||+..|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            347999999999999999988651        11110        11112344555555555555899999999999999


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  153 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      -....+++-.|+++.|||.+..-....+..|.+    ....++|-+.++||+|.....   ..........+++.
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an---fe~avdsi~ekl~a  184 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN---FENAVDSIEEKLGA  184 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh---hhhHHHHHHHHhCC
Confidence            999999999999999999987655556666643    333478999999999964322   22334444455554

>cd01859 MJ1464 MJ1464

Probab=98.60  E-value=1.7e-07  Score=66.59  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=37.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      ...+++++|.+++|||||+|++.+..... ..++.+.......+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            34789999999999999999999755332 222333333222233333   699999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.59  E-value=3.2e-07  Score=66.21  Aligned_cols=99  Identities=19%  Similarity=0.139  Sum_probs=63.6

Q ss_pred             CCCcc-cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027918           71 TAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  149 (217)
Q Consensus        71 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (217)
                      .||+. +........+.++|++++|+|+.++....+. .+...+     .+.|+++|+||+|+.+. .  ......++..
T Consensus         2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~~-----~~k~~ilVlNK~Dl~~~-~--~~~~~~~~~~   72 (171)
T cd01856           2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKIL-----GNKPRIIVLNKADLADP-K--KTKKWLKYFE   72 (171)
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhHh-----cCCCEEEEEehhhcCCh-H--HHHHHHHHHH
Confidence            35543 3334456678899999999999876432211 122211     14689999999998531 1  1111112223


Q ss_pred             HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          150 EYGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ..+..++.+||+++.|++++.+.|...+.
T Consensus        73 ~~~~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          73 SKGEKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             hcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence            33457899999999999999999888764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.2e-06  Score=73.64  Aligned_cols=93  Identities=16%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             EEEEeeCCCccc---ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918           65 KLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT  141 (217)
Q Consensus        65 ~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~  141 (217)
                      .+.++|.||...   ...-...+..++|++|+|.++.+.-+.... .++......   .+.|+|+.||.|...+ ...-.
T Consensus       207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~~---KpniFIlnnkwDasas-e~ec~  281 (749)
T KOG0448|consen  207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSEE---KPNIFILNNKWDASAS-EPECK  281 (749)
T ss_pred             cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhcc---CCcEEEEechhhhhcc-cHHHH
Confidence            578899999653   334345577899999999999775543332 233333322   3556777789997542 22222


Q ss_pred             HHHHHHHHHhC--------CeEEEEcCCC
Q 027918          142 SKGQALADEYG--------IKFFETSAKT  162 (217)
Q Consensus       142 ~~~~~~~~~~~--------~~~~~~Sa~~  162 (217)
                      +++.....++.        -.+|+||+++
T Consensus       282 e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  282 EDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            22222222222        3578888653

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=6.9e-07  Score=73.74  Aligned_cols=137  Identities=17%  Similarity=0.162  Sum_probs=81.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      .+.+-++|+|+||+||||||+.|...-...+.....+    .++ .+.++...++|..+|..  ... .....+-+|+++
T Consensus        67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVl  138 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVL  138 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHH-HHhHHHhhheeE
Confidence            4557788999999999999999876432221111111    122 24556679999999932  223 334557799999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCccChHHHH----HHHHH--hCCeEEEEcCCC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVPTSKGQ----ALADE--YGIKFFETSAKT  162 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~  162 (217)
                      +++|.+-.=-.+.+. +++.+..+   ++| |+-|+|+.|+..... .....-.    .|..+  .|+.+|.+|-..
T Consensus       139 LlIdgnfGfEMETmE-FLnil~~H---GmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         139 LLIDGNFGFEMETME-FLNILISH---GMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEeccccCceehHHH-HHHHHhhc---CCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999987543333332 33334333   455 667889999865221 1111111    22222  257888888754

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.56  E-value=5.4e-07  Score=63.93  Aligned_cols=85  Identities=22%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |++++|+|+.++.+....  ++.. ......+.|+++|+||+|+...  ....+....+.......++.+||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~--~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPK--EVLRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCH--HHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            689999999887654321  2221 1112236899999999998431  1001111223223345789999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          169 VFFSIARDIK  178 (217)
Q Consensus       169 l~~~l~~~~~  178 (217)
                      +++.+.+...
T Consensus        76 L~~~i~~~~~   85 (155)
T cd01849          76 KESAFTKQTN   85 (155)
T ss_pred             HHHHHHHHhH
Confidence            9999877654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.55  E-value=1.7e-07  Score=74.28  Aligned_cols=57  Identities=30%  Similarity=0.306  Sum_probs=42.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ..++++|+|.||+|||||||+|.+.... ....|+.|  .....+..+.   .+.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~T--k~~q~i~~~~---~i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTT--KGIQWIKLDD---GIYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCcee--cceEEEEcCC---CeEEecCCCcC
Confidence            3478999999999999999999997764 34455444  4444455554   48999999954

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.53  E-value=4.8e-06  Score=66.86  Aligned_cols=141  Identities=17%  Similarity=0.235  Sum_probs=83.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC--------------CCCccc-------ceeee---EEEEEEEE-CCeEEEEEEee
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF--------------TTSFIT-------TIGID---FKIRTIEL-DGKRIKLQIWD   70 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~--------------~~~~~~-------~~~~~---~~~~~~~~-~~~~~~~~l~D   70 (217)
                      +=|.|||+-.+||||||++|...-+              ++-+.+       |+...   .....+.+ ++..+++.++|
T Consensus        18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiD   97 (492)
T PF09547_consen   18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLID   97 (492)
T ss_pred             eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEe
Confidence            7799999999999999999965111              000111       11111   11223333 46678999999


Q ss_pred             CCCcc--------c------ccchhh---------------hccc--CCcEEEEEEeCCC----hhhHHHH-HHHHHHHH
Q 027918           71 TAGQE--------R------FRTITT---------------AYYR--GAMGILLVYDVTD----ESSFNNI-RNWIRNIE  114 (217)
Q Consensus        71 t~G~~--------~------~~~~~~---------------~~~~--~~d~~i~v~d~~~----~~s~~~~-~~~~~~l~  114 (217)
                      +-|-.        +      ...-|-               ..+.  ..-++++.-|.+=    ++.+... .+.+++|.
T Consensus        98 CVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk  177 (492)
T PF09547_consen   98 CVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELK  177 (492)
T ss_pred             ecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHH
Confidence            98711        0      011111               1112  2234555444321    3333333 33566666


Q ss_pred             HhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918          115 QHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus       115 ~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ..   +.|+++++|-.+   +......+...++..+++++.+.+++..
T Consensus       178 ~i---gKPFvillNs~~---P~s~et~~L~~eL~ekY~vpVlpvnc~~  219 (492)
T PF09547_consen  178 EI---GKPFVILLNSTK---PYSEETQELAEELEEKYDVPVLPVNCEQ  219 (492)
T ss_pred             Hh---CCCEEEEEeCCC---CCCHHHHHHHHHHHHHhCCcEEEeehHH
Confidence            55   789999999877   3455566778888889999999988754

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.53  E-value=1.5e-07  Score=69.35  Aligned_cols=120  Identities=18%  Similarity=0.191  Sum_probs=80.9

Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKA  130 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~  130 (217)
                      ..+.+.++|.+|+..-+.-|.+++.+.-.++|++.++.-          ...+.-..++..+-.+ .-.+.+||++.||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            347888999999999999999999998888888776542          1222222333333222 12468999999999


Q ss_pred             CCCCC---------------CCccChHHHHHHHHHh----C------CeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918          131 DMDES---------------KRAVPTSKGQALADEY----G------IKFFETSAKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       131 Dl~~~---------------~~~~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      |+.++               ....+.+.+.+|..+.    +      +.-.++.|.+-+|+.-+|..+.+.+.+..
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~  352 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  352 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence            97542               1233455666665443    1      22356778888999999999988887653

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=8.6e-07  Score=68.84  Aligned_cols=146  Identities=16%  Similarity=0.182  Sum_probs=92.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc---C-------CCCC----CcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD---G-------SFTT----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      ...++|.-+|.-.-|||||-..+..   .       .+.+    .....-++.+....+.+......+.=.|+||+..|-
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI  131 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI  131 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence            4568999999999999999666533   1       1111    012233455555566555444567778999999988


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHHHHHHhC----
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQALADEYG----  152 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~----  152 (217)
                      .....-....|+.|+|+.++|......-+- + .+.+..+ -..+++++||.|+.++..-..  .-+++++..+++    
T Consensus       132 KNMItGaaqMDGaILVVaatDG~MPQTrEH-l-LLArQVG-V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd  208 (449)
T KOG0460|consen  132 KNMITGAAQMDGAILVVAATDGPMPQTREH-L-LLARQVG-VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD  208 (449)
T ss_pred             HHhhcCccccCceEEEEEcCCCCCcchHHH-H-HHHHHcC-CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence            777667778999999999999653222111 1 1223222 135677789999975443322  233556666665    


Q ss_pred             -CeEEEEcCC
Q 027918          153 -IKFFETSAK  161 (217)
Q Consensus       153 -~~~~~~Sa~  161 (217)
                       +|++.-||.
T Consensus       209 ~~PvI~GSAL  218 (449)
T KOG0460|consen  209 NTPVIRGSAL  218 (449)
T ss_pred             CCCeeecchh
Confidence             688877763

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.51  E-value=9.7e-08  Score=67.41  Aligned_cols=58  Identities=26%  Similarity=0.222  Sum_probs=33.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      .++++|++|+|||||+|.|......      .....+..+......+...+   ...|+||||...+
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~  100 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF  100 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence            6899999999999999999986321      11111212222223334433   3578999996543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.50  E-value=3.7e-07  Score=64.76  Aligned_cols=56  Identities=23%  Similarity=0.284  Sum_probs=38.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      ....+|+++|.+|+|||||+|.|.+... .....+..+.....  +..+   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            3457899999999999999999998653 22333343333332  3333   3689999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.49  E-value=6.5e-07  Score=67.67  Aligned_cols=59  Identities=25%  Similarity=0.480  Sum_probs=45.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCC----cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .++|+.+|..|.|||||+..|++-.+...    ..+.+......+.+.-.+..++++|+||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            48999999999999999999999877533    234444444455555577889999999998

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.46  E-value=5.8e-06  Score=62.27  Aligned_cols=88  Identities=15%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcc-cceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccc------hhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFI-TTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRT------ITT   82 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~------~~~   82 (217)
                      .+..-|.|+|++++|||+|+|.|++.  .+..... ...+..+........ +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            44567999999999999999999998  5542221 222222322222221 1236899999999654322      122


Q ss_pred             hcccC--CcEEEEEEeCCCh
Q 027918           83 AYYRG--AMGILLVYDVTDE  100 (217)
Q Consensus        83 ~~~~~--~d~~i~v~d~~~~  100 (217)
                      ..+..  ++++||..+....
T Consensus        85 ~~l~~llss~~i~n~~~~~~  104 (224)
T cd01851          85 FALATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHHHhCEEEEeccCccc
Confidence            23333  7888887776543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.45  E-value=1.2e-06  Score=68.21  Aligned_cols=101  Identities=22%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CCCccc-ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH
Q 027918           71 TAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD  149 (217)
Q Consensus        71 t~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~  149 (217)
                      .|||.. ........+..+|++++|+|+..+.+.... .+...+    . +.|+++|+||+|+.+.  . .......+..
T Consensus         4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-~kp~IiVlNK~DL~~~--~-~~~~~~~~~~   74 (276)
T TIGR03596         4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-NKPRLIVLNKADLADP--A-VTKQWLKYFE   74 (276)
T ss_pred             ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-CCCEEEEEEccccCCH--H-HHHHHHHHHH
Confidence            366552 233456677899999999999776443221 111112    1 5799999999998531  1 0111122223


Q ss_pred             HhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          150 EYGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ..+.+++.+|++++.|++++.+.|.+.+...
T Consensus        75 ~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        75 EKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             HcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            3456789999999999999999988877544

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=4e-06  Score=62.58  Aligned_cols=162  Identities=18%  Similarity=0.244  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCC--cHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           16 IKLLLIGDSGV--GKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        16 ~~I~v~G~~~~--GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +-++|+|-+|+  ||.+|+.+|....+.....+...++++..++.-......+.+.-.+-.+++............++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            56899999998  9999999999988887766666666666555433322333333333222222222223344567899


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-------------------------------------
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-------------------------------------  136 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-------------------------------------  136 (217)
                      +||++....+..+..|+....... .+ -.+.++||.|.....                                     
T Consensus        85 vfdlse~s~l~alqdwl~htdins-fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl  162 (418)
T KOG4273|consen   85 VFDLSEKSGLDALQDWLPHTDINS-FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL  162 (418)
T ss_pred             EEeccchhhhHHHHhhcccccccc-ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence            999999888888888865432211 01 124567888853210                                     


Q ss_pred             ------CccChHHHHHHHHHhCCeEEEEcCCC------------CCCHHHHHHHHHHHHHH
Q 027918          137 ------RAVPTSKGQALADEYGIKFFETSAKT------------NLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       137 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~------------~~~i~~l~~~l~~~~~~  179 (217)
                            .-.......+++.++++.+++.++.+            ..|+..+|..|..++.+
T Consensus       163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp  223 (418)
T KOG4273|consen  163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP  223 (418)
T ss_pred             cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence                  00223456788889999999988842            25788888888776654

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.39  E-value=6.8e-06  Score=67.79  Aligned_cols=135  Identities=17%  Similarity=0.267  Sum_probs=82.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-------------------------------------------------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-------------------------------------------------   42 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-------------------------------------------------   42 (217)
                      .++.++|+|+|+..+||||.+..+.....-+                                                 
T Consensus       305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E  384 (980)
T KOG0447|consen  305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE  384 (980)
T ss_pred             cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence            4678999999999999999999886521100                                                 


Q ss_pred             -----CcccceeeeEEEEEEEECCeE-EEEEEeeCCCcc-------------cccchhhhcccCCcEEEEEEeCCChhhH
Q 027918           43 -----SFITTIGIDFKIRTIELDGKR-IKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSF  103 (217)
Q Consensus        43 -----~~~~~~~~~~~~~~~~~~~~~-~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~  103 (217)
                           +...+.+.....+.+.+.|.. -.+.++|.||.-             ....+..++..+.+++|+|+.-...+.-
T Consensus       385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE  464 (980)
T KOG0447|consen  385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE  464 (980)
T ss_pred             HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence                 000111222233333333322 468899999932             2234567788999999999764332221


Q ss_pred             H-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH
Q 027918          104 N-NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE  150 (217)
Q Consensus       104 ~-~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~  150 (217)
                      . .+..   .+....+.+...|+|.+|.|+.+ ....++..++.+...
T Consensus       465 RSnVTD---LVsq~DP~GrRTIfVLTKVDlAE-knlA~PdRI~kIleG  508 (980)
T KOG0447|consen  465 RSIVTD---LVSQMDPHGRRTIFVLTKVDLAE-KNVASPSRIQQIIEG  508 (980)
T ss_pred             hhhHHH---HHHhcCCCCCeeEEEEeecchhh-hccCCHHHHHHHHhc
Confidence            1 1222   23344455778899999999966 334556666666553

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.38  E-value=1.6e-06  Score=67.82  Aligned_cols=102  Identities=23%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             eCCCccc-ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH
Q 027918           70 DTAGQER-FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALA  148 (217)
Q Consensus        70 Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~  148 (217)
                      -.|||.. ........+..+|++++|+|+..+.+...  .++..+.   . +.|+++|+||+|+.+.  . ..+....+.
T Consensus         6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~-~kp~iiVlNK~DL~~~--~-~~~~~~~~~   76 (287)
T PRK09563          6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G-NKPRLLILNKSDLADP--E-VTKKWIEYF   76 (287)
T ss_pred             CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C-CCCEEEEEEchhcCCH--H-HHHHHHHHH
Confidence            3567653 22345567789999999999977644222  1111111   1 5799999999998531  1 112222223


Q ss_pred             HHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          149 DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ...+.+++.+|++++.|++++.+.|.+.+...
T Consensus        77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             HHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            34457789999999999999999888877554

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.37  E-value=1.2e-06  Score=61.19  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             hhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918           82 TAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      ...+.++|++++|+|+.++.+..  .+..|+...   . .+.|+++|+||+|+... .  .......+....+..++++|
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~-~--~~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTE-E--QRKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCH-H--HHHHHHHHHHhcCCeEEEEE
Confidence            34578899999999998876533  333343322   1 36899999999998431 1  12233444555567899999


Q ss_pred             CCCCCC
Q 027918          160 AKTNLN  165 (217)
Q Consensus       160 a~~~~~  165 (217)
                      |.++.+
T Consensus        79 a~~~~~   84 (141)
T cd01857          79 ALKENA   84 (141)
T ss_pred             ecCCCc
Confidence            998753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.37  E-value=9e-07  Score=70.71  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=34.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCC-cccc-----eeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTS-FITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      ++|+|.+|+|||||||+|++.....+ ..+.     -.++....-+.+.+   ...|+||||...+.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~---~~~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH---GGDLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC---CCEEEECCCCCccc
Confidence            78999999999999999997643211 1111     11112222233332   12489999976543

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.37  E-value=4.3e-06  Score=66.07  Aligned_cols=93  Identities=23%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             EEEEEeeCCCcccccch----hhhc--------ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAY--------YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      +.+.|+||||.......    ...+        -...+..++|+|++...  +.+... ..+....   .+--+|+||.|
T Consensus       197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~~---~~~giIlTKlD  270 (318)
T PRK10416        197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEAV---GLTGIILTKLD  270 (318)
T ss_pred             CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhhC---CCCEEEEECCC
Confidence            57999999996532221    1111        12467789999998543  223221 2222211   24478899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ...     ..-.+...+...+.|+..++  +|++++++
T Consensus       271 ~t~-----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        271 GTA-----KGGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCC-----CccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            432     12334455566789988888  78888776

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=3.1e-06  Score=60.25  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|..|+|||||+++++..
T Consensus         2 ~~~l~G~~GsGKTtl~~~l~~~   23 (158)
T cd03112           2 VTVLTGFLGAGKTTLLNHILTE   23 (158)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3689999999999999998764

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.35  E-value=2.9e-06  Score=68.19  Aligned_cols=84  Identities=14%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKT  162 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~  162 (217)
                      ...++|.+++|+++..+-....+..++..+...   +.+.+||+||+||.++    ..+....+.. ..+.+++.+|+++
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~----~~~~~~~~~~~~~g~~Vi~vSa~~  181 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCED----AEEKIAEVEALAPGVPVLAVSALD  181 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCC----HHHHHHHHHHhCCCCcEEEEECCC
Confidence            357899999999997544455666666655554   6788999999999642    1112222222 3457899999999


Q ss_pred             CCCHHHHHHHHH
Q 027918          163 NLNVEQVFFSIA  174 (217)
Q Consensus       163 ~~~i~~l~~~l~  174 (217)
                      +.|++++..+|.
T Consensus       182 g~gl~~L~~~L~  193 (356)
T PRK01889        182 GEGLDVLAAWLS  193 (356)
T ss_pred             CccHHHHHHHhh
Confidence            999999888774

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.34  E-value=1.2e-06  Score=68.94  Aligned_cols=161  Identities=18%  Similarity=0.149  Sum_probs=88.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCC------------------CCCcccceeeeE--------------------EEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSF------------------TTSFITTIGIDF--------------------KIR   55 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~------------------~~~~~~~~~~~~--------------------~~~   55 (217)
                      ..++|+|+|.-.+|||||+-.|.....                  ..-..+.++.++                    .+.
T Consensus       132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv  211 (641)
T KOG0463|consen  132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV  211 (641)
T ss_pred             eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence            458999999999999999877754221                  111122222111                    111


Q ss_pred             EEEECCeEEEEEEeeCCCcccccchhhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           56 TIELDGKRIKLQIWDTAGQERFRTITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        56 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      .+-.+ ....++|+|..|+++|-.....-  =...|..++++-++..-- .-.++-+.....   ..+|+++|++|+|+-
T Consensus       212 kIce~-saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa---L~VPVfvVVTKIDMC  286 (641)
T KOG0463|consen  212 KICED-SAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA---LHVPVFVVVTKIDMC  286 (641)
T ss_pred             eeccc-cceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh---hcCcEEEEEEeeccC
Confidence            11111 12468999999999986644322  234677777777654311 001111111112   268999999999974


Q ss_pred             CCCCccChHHHHHH-----------------------------HHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          134 ESKRAVPTSKGQAL-----------------------------ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       134 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      .+  .+..+.++.+                             ..+.-+++|.+|-.+|.+++-+ ......+..+.+
T Consensus       287 PA--NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~~  361 (641)
T KOG0463|consen  287 PA--NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRRQ  361 (641)
T ss_pred             cH--HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCcccc
Confidence            32  1222222222                             1222367999999999998654 344444444433

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.34  E-value=7e-06  Score=61.64  Aligned_cols=82  Identities=23%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-------cchhhhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~   88 (217)
                      -++.++|.|.+|||||+..+.+..........++.....-.+.+++  -++++.|.||.-+-       ........+.+
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            4899999999999999999998665533333333333444455666  68999999994321       12334456778


Q ss_pred             cEEEEEEeCCC
Q 027918           89 MGILLVYDVTD   99 (217)
Q Consensus        89 d~~i~v~d~~~   99 (217)
                      +.+++|.|..-
T Consensus       138 nli~~vld~~k  148 (358)
T KOG1487|consen  138 NLIFIVLDVLK  148 (358)
T ss_pred             cEEEEEeeccC
Confidence            88999998654

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.33  E-value=9.9e-08  Score=72.93  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=77.0

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-  138 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-  138 (217)
                      ..+.|+|+||++...+....-..-.|++++++..+.    +++.+.+..    +....  =..++++-||+||..++.. 
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa----veiM~--LkhiiilQNKiDli~e~~A~  198 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA----VEIMK--LKHIIILQNKIDLIKESQAL  198 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH----HHHhh--hceEEEEechhhhhhHHHHH
Confidence            468899999998766654444445677888877765    344554443    22221  1467888999998653322 


Q ss_pred             cChHHHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918          139 VPTSKGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       139 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      ...+.+..|...-   +.|++++||--++|++-+.++|++.+.-...+
T Consensus       199 eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd  246 (466)
T KOG0466|consen  199 EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD  246 (466)
T ss_pred             HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence            2245556665543   46999999999999999999999888654433

>PRK13796 GTPase YqeH; Provisional

Probab=98.33  E-value=4.2e-06  Score=67.57  Aligned_cols=92  Identities=24%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH----HHHHhC
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LADEYG  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~~~~~  152 (217)
                      |...........+.+++|+|+.+..     ..|...+.+... +.|+++|+||+|+..  .....+.+..    ++...+
T Consensus        59 ~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~--~~~~~~~i~~~l~~~~k~~g  130 (365)
T PRK13796         59 FLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLP--KSVKKNKVKNWLRQEAKELG  130 (365)
T ss_pred             HHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCC--CccCHHHHHHHHHHHHHhcC
Confidence            4443333323334899999997743     224445554433 579999999999854  2222333333    344555


Q ss_pred             C---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918          153 I---KFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       153 ~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      +   .++.+||+++.|++++++.|.+.
T Consensus       131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        131 LRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4   68999999999999999998654

>PRK14974 cell division protein FtsY; Provisional

Probab=98.33  E-value=2.1e-06  Score=68.12  Aligned_cols=94  Identities=14%  Similarity=0.104  Sum_probs=55.3

Q ss_pred             EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.......    ...+.  ...|.+++|+|+.....   .......+....   ..--+|+||.|...   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~---~~~giIlTKlD~~~---  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV---GIDGVILTKVDADA---  293 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC---CCCEEEEeeecCCC---
Confidence            46899999996542221    11221  25688899999876432   222222232221   12468899999633   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                        ..-.+..++...+.|+.+++  +|.+++++.
T Consensus       294 --~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        294 --KGGAALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             --CccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence              12233344555688888887  788888774

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.31  E-value=1.7e-05  Score=64.75  Aligned_cols=134  Identities=14%  Similarity=0.084  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc------CCC---CC-Cc-----------ccceeeeEEEEEEEEC-------------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD------GSF---TT-SF-----------ITTIGIDFKIRTIELD-------------   60 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~------~~~---~~-~~-----------~~~~~~~~~~~~~~~~-------------   60 (217)
                      .--|+++|++|+||||++..|..      ..+   .. .+           ....+..++......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            35799999999999999998863      111   00 00           0001111111110001             


Q ss_pred             CeEEEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           61 GKRIKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        61 ~~~~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .....+.|+||+|........    ..+  ....+-+++|+|+.......   .....+...   -.+--+|+||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCC
Confidence            013689999999955332211    111  23467899999987553222   122233322   135578899999632


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEc
Q 027918          135 SKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                           ..=.+.......+.|+.+++
T Consensus       254 -----rgG~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       254 -----KGGGALSAVAATKSPIIFIG  273 (429)
T ss_pred             -----CccHHhhhHHHHCCCeEEEc
Confidence                 11223334445555555443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.29  E-value=1.2e-05  Score=62.28  Aligned_cols=94  Identities=16%  Similarity=0.123  Sum_probs=55.8

Q ss_pred             EEEEEeeCCCcccccchhh----h---c-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTITT----A---Y-----YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~----~---~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.|+||||.........    .   .     -...|.+++|+|++...  +.+.. ...+.+..   .+--+|+||.|
T Consensus       155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKlD  228 (272)
T TIGR00064       155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKLD  228 (272)
T ss_pred             CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEccC
Confidence            5789999999654332211    1   1     12378899999997542  22322 22333222   13478899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      -..     ..-.+..+....+.|+.+++  +|++++++.
T Consensus       229 e~~-----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       229 GTA-----KGGIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCC-----CccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            533     12234445556678888887  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.29  E-value=1.8e-06  Score=69.60  Aligned_cols=56  Identities=29%  Similarity=0.392  Sum_probs=38.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      .+|+|+|.+|+|||||+|+|++...      .....+.++..  ...+..++   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCCCC
Confidence            4899999999999999999997432      22333444433  33444433   367999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK13796 GTPase YqeH; Provisional

Probab=98.28  E-value=1.4e-06  Score=70.34  Aligned_cols=55  Identities=29%  Similarity=0.320  Sum_probs=37.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      .++.|+|.+|+|||||||+|+....      .....+++|.  ....+.+++   ...++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~--~~~~~~l~~---~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTL--DKIEIPLDD---GSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccc--eeEEEEcCC---CcEEEECCCcc
Confidence            3799999999999999999986421      1223344333  334444444   24799999964

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.27  E-value=1.8e-06  Score=65.85  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++++|.+|+|||||+|.|.+..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhh
Confidence            68999999999999999999753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12289 GTPase RsgA; Reviewed

Probab=98.22  E-value=2.4e-06  Score=68.34  Aligned_cols=55  Identities=25%  Similarity=0.256  Sum_probs=33.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCC-Ccccc-----eeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTT-SFITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ++|+|++|+|||||||.|++..... ...+.     -.++....-+...+.   ..|+||||..
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~  235 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFN  235 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcc
Confidence            8999999999999999999754321 11121     011222233333321   2689999974

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=8.8e-06  Score=73.48  Aligned_cols=112  Identities=22%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC-CCCCC----cccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhc
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG-SFTTS----FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAY   84 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~   84 (217)
                      -+|||++|+||||++..---. ++...    .....+  .....+.+.+   .-.++||.|..        .....|..+
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence            589999999999997654221 11111    111111  1222344444   56678988822        223345443


Q ss_pred             ---------ccCCcEEEEEEeCCCh------h---hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           85 ---------YRGAMGILLVYDVTDE------S---SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        85 ---------~~~~d~~i~v~d~~~~------~---s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                               .+-.+++|+.+|+.+-      +   ....++.-+.++....+...||++++||.|+..
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                     2468999999997652      1   123344456667666677899999999999854

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=6.8e-06  Score=65.30  Aligned_cols=156  Identities=17%  Similarity=0.082  Sum_probs=94.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC-------------------------------CCCCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG-------------------------------SFTTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++++|+|.-.+||||+-..+...                               .-.+.....-+.+.....+....
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            45689999999999999996665330                               01112222223333333333333


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHHHHHH--HHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRN--WIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~--~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                        ..+++.|+||+..|-.....-..++|+.++|+++.-.+   .|+.--+  -...+....+ -...|+++||+|-+...
T Consensus       157 --~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  157 --KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-VKHLIVLINKMDDPTVN  233 (501)
T ss_pred             --eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-cceEEEEEEeccCCccC
Confidence              58999999999988877777778899999999884322   1222111  1112222222 24678999999954322


Q ss_pred             Cc-----cChHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q 027918          137 RA-----VPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus       137 ~~-----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ..     ...+.+..|.+..+      ..++++|..+|.++.+..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            11     11233444444333      5789999999999887654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.4e-05  Score=62.87  Aligned_cols=137  Identities=14%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEE------------------EEEEEE---------CCeEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFK------------------IRTIEL---------DGKRIK   65 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~---------~~~~~~   65 (217)
                      -.++++|++|+||||++.+|......   .......+.+.+                  ...+.-         .-....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            47899999999999999998753211   001111111111                  001100         001247


Q ss_pred             EEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC-----CCcEEEEEeCCCCCC
Q 027918           66 LQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-----NVNKVLVGNKADMDE  134 (217)
Q Consensus        66 ~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-----~~pvivv~nK~Dl~~  134 (217)
                      +.|+||+|....+...    ..+  .....-.++|++++...  +.+...+..+......     ..+--+|+||.|-..
T Consensus       218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~  295 (374)
T PRK14722        218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS  295 (374)
T ss_pred             EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence            8999999965433221    111  12234568888887643  2233333333322110     012357789999422


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEc
Q 027918          135 SKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                           ..=.+..+....+.|+.+++
T Consensus       296 -----~~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        296 -----NLGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             -----CccHHHHHHHHHCcCeEEEe
Confidence                 33344556666676655554

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.13  E-value=2.8e-05  Score=60.18  Aligned_cols=93  Identities=17%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             hhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918           80 ITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus        80 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                      +.+--..+.|-+++|+++.+|+ +...+..++-.....   ++..+|++||+||.++..... ++........+.+.+.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEe
Confidence            3344445677788888888876 455566655555443   567788899999976433222 45566677788999999


Q ss_pred             cCCCCCCHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~  176 (217)
                      |++++.+++++.+.+...
T Consensus       148 s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGDGLEELAELLAGK  165 (301)
T ss_pred             cCcCcccHHHHHHHhcCC
Confidence            999999999988776543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.12  E-value=4.5e-06  Score=64.42  Aligned_cols=59  Identities=25%  Similarity=0.285  Sum_probs=37.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      -.+++|.+|+|||||+|+|...      .++.....+-.++....-+.+.+   -=.|+||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~---gG~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG---GGWIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC---CCEEEeCCCCCccC
Confidence            5789999999999999999863      22233323333334445555532   12468999975443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.12  E-value=6.7e-06  Score=64.28  Aligned_cols=59  Identities=27%  Similarity=0.253  Sum_probs=36.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-c-----cceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-I-----TTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      -.++++|++|+|||||+|.|.+....... .     .+..+......+...+   ...++||||...+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence            36999999999999999999985432211 1     1111222223334432   2358999998654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13695 putative NTPase; Provisional

Probab=98.11  E-value=0.00013  Score=52.73  Aligned_cols=22  Identities=36%  Similarity=0.768  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998754

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.09  E-value=0.00019  Score=59.99  Aligned_cols=155  Identities=17%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccc-----------------eeeeEEEEEEEE---------CCeE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITT-----------------IGIDFKIRTIEL---------DGKR   63 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~-----------------~~~~~~~~~~~~---------~~~~   63 (217)
                      -.|+|+|++|+||||++..|...-.      ......+                 .+..+.  ....         .-..
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~  428 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD  428 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence            4789999999999999988864210      0000000                 011111  1000         0013


Q ss_pred             EEEEEeeCCCcccccchhh------hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.........      .... ....++|++...  +..++...+..+...    .+.-+|+||.|-..   
T Consensus       429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~---  498 (559)
T PRK12727        429 YKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG---  498 (559)
T ss_pred             CCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc---
Confidence            6789999999643322111      0111 234567777753  334444444444332    35679999999522   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHHHhcccCC
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQRLADTDS  186 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~~~~~~~~  186 (217)
                        ..-.+..+....+.++.+++  +|..+ +++    -..|++.+.......++
T Consensus       499 --~lG~aLsv~~~~~LPI~yvt--~GQ~VPeDL~~A~~~~Lv~r~~~l~~~~~~  548 (559)
T PRK12727        499 --RFGSALSVVVDHQMPITWVT--DGQRVPDDLHRANAASLVLRLEDLRRAADK  548 (559)
T ss_pred             --chhHHHHHHHHhCCCEEEEe--CCCCchhhhhcCCHHHHHHHHHHHHhhccC
Confidence              22445555666677665554  34444 222    23455555544444333

>PRK00098 GTPase RsgA; Reviewed

Probab=98.09  E-value=7.8e-06  Score=64.26  Aligned_cols=57  Identities=28%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCc-ccc-----eeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITT-----IGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      .++++|++|+|||||+|.|.+.....+. .+.     ..+......+...+   ...++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCc
Confidence            5899999999999999999875432211 111     01112222233333   247899999753

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.6e-05  Score=64.99  Aligned_cols=132  Identities=21%  Similarity=0.210  Sum_probs=85.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC------------CC----CCcccceeeeEEEEEEEE--------------CC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS------------FT----TSFITTIGIDFKIRTIEL--------------DG   61 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~------------~~----~~~~~~~~~~~~~~~~~~--------------~~   61 (217)
                      ..+.-++-|+..-.-|||||-..|....            +.    .......++....+.+.+              ++
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            3455678999999999999998885421            11    112223333322222222              33


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT  141 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~  141 (217)
                      ..+.++++|.||+-.|.+.....++-.|++++|+|..+.-....-..+.+.+..    .+.-++|.||.|..--+.+.+.
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~  171 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQ  171 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCH
Confidence            458899999999999999999999999999999998876443333333344433    3444778999995433445555


Q ss_pred             HHHHHH
Q 027918          142 SKGQAL  147 (217)
Q Consensus       142 ~~~~~~  147 (217)
                      ++....
T Consensus       172 EeLyqt  177 (842)
T KOG0469|consen  172 EELYQT  177 (842)
T ss_pred             HHHHHH
Confidence            555443

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.06  E-value=1.7e-05  Score=56.86  Aligned_cols=134  Identities=21%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeC-CCcc---------------ccc--
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-AGQE---------------RFR--   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~~---------------~~~--   78 (217)
                      ||++.|++|+|||||+++++..-.. ...+..+  ++...+..++.++-+.+.|. .|..               .|.  
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~-~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKK-KGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHH-TCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhc-cCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            6899999999999999998753211 1112222  33344445555566666666 3311               011  


Q ss_pred             -----chhhhcc----cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC-CCCCCCCccChHHHHHHH
Q 027918           79 -----TITTAYY----RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA-DMDESKRAVPTSKGQALA  148 (217)
Q Consensus        79 -----~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~-Dl~~~~~~~~~~~~~~~~  148 (217)
                           ......+    ..++  ++|+|---+-- .....|.+.+......+.|++.++-+. +.         ...+.+.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~---------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN---------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S---------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc---------HHHHHHH
Confidence                 1101111    3344  66667322100 011223444444444568888888765 32         2344566


Q ss_pred             HHhCCeEEEEcCCCCCC
Q 027918          149 DEYGIKFFETSAKTNLN  165 (217)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~  165 (217)
                      ...++.++.++..+-+.
T Consensus       146 ~~~~~~i~~vt~~NRd~  162 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDA  162 (168)
T ss_dssp             TTTTSEEEE--TTTCCC
T ss_pred             hCCCcEEEEeChhHHhh
Confidence            66678888887665443

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.05  E-value=7.7e-06  Score=66.85  Aligned_cols=56  Identities=21%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      .+.|.+||.||+||||+||.|.+.+. +.+.+|+.+..+.  ++.+..   .+.|.|+||.-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQ--Ti~ls~---~v~LCDCPGLV  370 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQ--TIFLSP---SVCLCDCPGLV  370 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeE--EEEcCC---CceecCCCCcc
Confidence            68999999999999999999998754 4666666664444  444444   68899999954

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.02  E-value=0.00011  Score=53.02  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=45.1

Q ss_pred             EEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+|++|...+....    ..+  ....+.+++|++......   ...+...+.+..  + ...+|.||.|....  
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~--  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDAR--  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCC--
Confidence            468889999974322111    111  124889999999865432   223333333322  2 24677899996431  


Q ss_pred             ccChHHHHHHHHHhCCeEEE
Q 027918          138 AVPTSKGQALADEYGIKFFE  157 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~  157 (217)
                         ...+...+...++|+..
T Consensus       155 ---~g~~~~~~~~~~~p~~~  171 (173)
T cd03115         155 ---GGAALSIRAVTGKPIKF  171 (173)
T ss_pred             ---cchhhhhHHHHCcCeEe
Confidence               12222356666666543

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.01  E-value=2.6e-05  Score=56.88  Aligned_cols=122  Identities=16%  Similarity=0.176  Sum_probs=66.9

Q ss_pred             EEEEEeeCCCcccccc-------hhhhccc-C-CcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           64 IKLQIWDTAGQERFRT-------ITTAYYR-G-AMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~-------~~~~~~~-~-~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      -.+.++|.||+-+...       +..+.-+ + --.++|+++..= -++...+.-.+..+.....-.+|-|=|.+|.||.
T Consensus        98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl  177 (273)
T KOG1534|consen   98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL  177 (273)
T ss_pred             CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence            3688999999765321       1111111 1 123455555421 1333344444444544444478999999999985


Q ss_pred             CCCCccChHHHHHH-------------------------------HHHhC-CeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918          134 ESKRAVPTSKGQAL-------------------------------ADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       134 ~~~~~~~~~~~~~~-------------------------------~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      .+   ..+++++.|                               ...++ +.+++....+.+.++.++..|-.++.-..
T Consensus       178 k~---~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~E  254 (273)
T KOG1534|consen  178 KD---KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGE  254 (273)
T ss_pred             hh---hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhcc
Confidence            43   111111111                               11223 46788888888888888888777776554


Q ss_pred             cccCCCC
Q 027918          182 ADTDSRS  188 (217)
Q Consensus       182 ~~~~~~~  188 (217)
                      ....+.+
T Consensus       255 d~E~k~~  261 (273)
T KOG1534|consen  255 DLEPKEP  261 (273)
T ss_pred             ccCccCC
Confidence            4433333

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.95  E-value=1.1e-05  Score=59.43  Aligned_cols=90  Identities=19%  Similarity=0.109  Sum_probs=50.1

Q ss_pred             EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.......    ...++  ...+-+++|.+++...  +.+..+.. ......   +--+++||.|-..   
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~-~~~~~~---~~~lIlTKlDet~---  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALA-FYEAFG---IDGLILTKLDETA---  154 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHH-HHHHSS---TCEEEEESTTSSS---
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHH-Hhhccc---CceEEEEeecCCC---
Confidence            46899999995543221    11111  1467788999987654  33332222 223221   2357799999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                        ..-.+..++...+.|+-.++  +|.++
T Consensus       155 --~~G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  155 --RLGALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             --TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             --CcccceeHHHHhCCCeEEEE--CCCCh
Confidence              33446667777788776664  34444

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.94  E-value=4.8e-05  Score=43.56  Aligned_cols=45  Identities=24%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             cCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           86 RGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      .-.++++|++|++..  .+.+....++.+++..+. +.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            346889999999864  457777778888888886 589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.92  E-value=0.00032  Score=55.56  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=52.7

Q ss_pred             EEEEEeeCCCcccccchhhh-----cc---cCCcEEEEEEeCCChhhHHH-H-HHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITTA-----YY---RGAMGILLVYDVTDESSFNN-I-RNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~~~-~-~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      ....++++.|...=......     .+   -..|+++-|+|+.+-..... . .....++...   +   +||+||.|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D---~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---D---VIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---c---EEEEecccCC
Confidence            45667777775442221111     11   24577999999865433211 1 1222233221   2   8899999997


Q ss_pred             CCCCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHH
Q 027918          134 ESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++.   ..+..+...+..+  .+++.++. .+.+..+++
T Consensus       159 ~~~---~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAE---ELEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHH---HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            643   2445555566655  57777777 333444444

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.91  E-value=6.7e-05  Score=52.74  Aligned_cols=57  Identities=21%  Similarity=0.191  Sum_probs=34.8

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.|+||+|..   .....++..+|.++++...+-.+.+.-++-  ..+..      -=++++||.|
T Consensus        92 ~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~  148 (148)
T cd03114          92 FDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD  148 (148)
T ss_pred             CCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence            678899998853   222347788998888888763333221111  11211      1278899987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.89  E-value=4.1e-05  Score=63.00  Aligned_cols=85  Identities=19%  Similarity=0.121  Sum_probs=47.7

Q ss_pred             EEEEEeeCCCcccccchh----hh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  136 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~  136 (217)
                      ..+.|+||+|........    ..  ....+|.+++|+|++...   +.......+...    .+ .-+|+||.|...  
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~a--  246 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGTA--  246 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCCC--
Confidence            378999999965433211    11  133578899999987642   222222223221    23 357789999532  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEcC
Q 027918          137 RAVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                         ..=.+..+....+.|+.+++.
T Consensus       247 ---~~G~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        247 ---KGGGALSAVAETGAPIKFIGT  267 (437)
T ss_pred             ---cccHHHHHHHHHCcCEEEEec
Confidence               123344556666776665543

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=5.9e-05  Score=60.79  Aligned_cols=132  Identities=20%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC---------CCC------------cccceeeeEEEEEEEE----------C-CeE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF---------TTS------------FITTIGIDFKIRTIEL----------D-GKR   63 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~---------~~~------------~~~~~~~~~~~~~~~~----------~-~~~   63 (217)
                      -.|+|+|++|+||||++..|...-.         ..+            +....+..+.... ..          . ...
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRALTYFKEEAR  320 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHHHHHHhccC
Confidence            5799999999999999999864110         000            0000111111000 00          0 012


Q ss_pred             EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.......    ...++  ...+.+++|+|++...  .++..+...+...    ..--+|+||.|-..   
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~~----~idglI~TKLDET~---  391 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---  391 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcCC----CCCEEEEEcccCCC---
Confidence            57899999996432211    12222  2356778888875432  3344444444331    22367899999432   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEc
Q 027918          138 AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                        ..=.+..++...+.|+..++
T Consensus       392 --k~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        392 --SSGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --CccHHHHHHHHHCcCEEEEe
Confidence              23344556666777665554

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.83  E-value=0.00023  Score=56.46  Aligned_cols=85  Identities=9%  Similarity=0.124  Sum_probs=45.6

Q ss_pred             EEEEEeeCCCcccccchhhhccc--------CCcEEEEEEeCCChhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITTAYYR--------GAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ....++++.|...-......++.        ..+.++.|+|+.+.... ........++..   .+   +||+||+|+..
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~---AD---~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY---AD---RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh---CC---EEEEeccccCC
Confidence            45677888886654333332211        24789999998653221 111112222222   12   88999999865


Q ss_pred             CCCccChHHHHHHHHHhC--CeEEEEc
Q 027918          135 SKRAVPTSKGQALADEYG--IKFFETS  159 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~S  159 (217)
                      +     .+......+..+  .+++.++
T Consensus       165 ~-----~~~~~~~l~~lnp~a~i~~~~  186 (318)
T PRK11537        165 E-----AEKLRERLARINARAPVYTVV  186 (318)
T ss_pred             H-----HHHHHHHHHHhCCCCEEEEec
Confidence            2     134555555544  4666543

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.83  E-value=3.7e-05  Score=59.34  Aligned_cols=61  Identities=18%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCC------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      .+..++++|+|.||+|||||||.+.....      .....++.+..+... +.+... -.+.+.||||.
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC-CceEEecCCCc
Confidence            35668999999999999999998865322      233445555444332 333332 25899999994

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.81  E-value=0.00017  Score=58.97  Aligned_cols=136  Identities=15%  Similarity=0.165  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC---CCccc--------------------ceeeeEEEEE---------EEECCeE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---TSFIT--------------------TIGIDFKIRT---------IELDGKR   63 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~--------------------~~~~~~~~~~---------~~~~~~~   63 (217)
                      -.|+++|++|+||||++..|.+....   .....                    ..+.......         ....  .
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~--~  269 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR--G  269 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--C
Confidence            48999999999999999988653110   00000                    0000000000         0001  2


Q ss_pred             EEEEEeeCCCccccc----chhhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFR----TITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.++||+|.....    .....+.  ...+-.++|+|++...  +.+..++..+...    -.--+|+||.|-..   
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~~----~~~~~I~TKlDEt~---  340 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQGH----GIHGCIITKVDEAA---  340 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence            467899999954321    1122221  2234577888887432  3334433333221    23367899999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                        ..=.+..++...+.++..++  +|.++
T Consensus       341 --~~G~~l~~~~~~~lPi~yvt--~Gq~V  365 (420)
T PRK14721        341 --SLGIALDAVIRRKLVLHYVT--NGQKV  365 (420)
T ss_pred             --CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence              33344556667777765554  45555

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.77  E-value=0.00034  Score=56.34  Aligned_cols=154  Identities=16%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCC--C-CCcccceeeeEEEE-----------------EEEE----------CCeEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSF--T-TSFITTIGIDFKIR-----------------TIEL----------DGKRI   64 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~--~-~~~~~~~~~~~~~~-----------------~~~~----------~~~~~   64 (217)
                      .=.|++|||.|+||||-+-+|...-.  . .......+++.+-+                 .+..          .-...
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            34699999999999999998876433  1 11111112222111                 0000          00135


Q ss_pred             EEEEeeCCCcccccchh----hhcccC--CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCCC
Q 027918           65 KLQIWDTAGQERFRTIT----TAYYRG--AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKADMDESKR  137 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~----~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK~Dl~~~~~  137 (217)
                      .+.|+||.|...++...    ..++..  ..-+.+|++++..  .+++...+..+...     |+ =+++||.|=..   
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~---  352 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETT---  352 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccC---
Confidence            79999999966554332    223322  2335667777643  36666666555432     32 47789999211   


Q ss_pred             ccChHHHHHHHHHhCCe--EEEEcCCCCCCHHHH-HHHHHHHHHHH
Q 027918          138 AVPTSKGQALADEYGIK--FFETSAKTNLNVEQV-FFSIARDIKQR  180 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~--~~~~Sa~~~~~i~~l-~~~l~~~~~~~  180 (217)
                        ..=.+.....+.+.|  |+..-..=.+++... -++|++.+..-
T Consensus       353 --s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~  396 (407)
T COG1419         353 --SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT  396 (407)
T ss_pred             --chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence              222333444444544  443333334444433 35566655443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.76  E-value=0.00024  Score=58.56  Aligned_cols=90  Identities=17%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             EEEEEeeCCCccccc----chhhhccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFR----TITTAYYR---GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      ..+.|+||+|.....    .....++.   ...-+++|++++...  ..+...+..+...   + +--+|+||.|-..  
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~--  371 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS--  371 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence            578999999965432    11222322   234567778875432  3344433333321   1 2368899999422  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918          137 RAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                         ..-.+..+....++|+..++  +|.++
T Consensus       372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        372 ---SLGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence               22356677777888776654  44454

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.73  E-value=3.4e-05  Score=61.33  Aligned_cols=59  Identities=20%  Similarity=0.374  Sum_probs=44.2

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ   74 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~   74 (217)
                      ....-+++.|+|.|++||||+||.|..+... ....++.+  .....+..+.   .+.|.|.||.
T Consensus       248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT--~smqeV~Ldk---~i~llDsPgi  307 (435)
T KOG2484|consen  248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVT--RSMQEVKLDK---KIRLLDSPGI  307 (435)
T ss_pred             ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccch--hhhhheeccC---CceeccCCce
Confidence            3456699999999999999999999987653 44455554  3344455554   7999999994

>TIGR00959 ffh signal recognition particle protein

Probab=97.71  E-value=0.00045  Score=56.82  Aligned_cols=86  Identities=20%  Similarity=0.117  Sum_probs=49.5

Q ss_pred             EEEEEeeCCCcccccchhh----h--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITT----A--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~----~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|........-    .  ..-..+.+++|+|+...   .+...+...+.....   ..-+|.||.|...   
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~---i~giIlTKlD~~~---  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG---LTGVVLTKLDGDA---  253 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC---CCEEEEeCccCcc---
Confidence            5689999999543322111    1  12346788999998754   333333344433221   2367799999522   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcC
Q 027918          138 AVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                        ..-.+..+....+.|+.++..
T Consensus       254 --~~G~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       254 --RGGAALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              112366677777887766554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.71  E-value=0.00021  Score=57.45  Aligned_cols=85  Identities=9%  Similarity=0.086  Sum_probs=46.3

Q ss_pred             EEEEEeeCCCcccccchh----hhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----TAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|........    ..+..  ..+.+++|.++.  ....++..++..+..    -.+--+|+||.|-..   
T Consensus       286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~~----l~i~glI~TKLDET~---  356 (407)
T PRK12726        286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLAE----IPIDGFIITKMDETT---  356 (407)
T ss_pred             CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcCc----CCCCEEEEEcccCCC---
Confidence            588999999975433221    12222  345666776653  223344443333221    123367899999432   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEc
Q 027918          138 AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                        ..=.+..++...+.|+..++
T Consensus       357 --~~G~~Lsv~~~tglPIsylt  376 (407)
T PRK12726        357 --RIGDLYTVMQETNLPVLYMT  376 (407)
T ss_pred             --CccHHHHHHHHHCCCEEEEe
Confidence              23445566677777766654

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.68  E-value=0.00047  Score=44.21  Aligned_cols=69  Identities=16%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-hhhcccCCcEEEEEEe
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYD   96 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d   96 (217)
                      |++.|..|+||||+...+...-... ..+.         ..++    .+.++|+++....... .......+|.++++++
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~-g~~v---------~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR-GKRV---------LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC-CCeE---------EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            6788999999999988886532211 1111         1111    6888999986533221 1345567888888888


Q ss_pred             CCCh
Q 027918           97 VTDE  100 (217)
Q Consensus        97 ~~~~  100 (217)
                      ....
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7653

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.67  E-value=0.00039  Score=57.25  Aligned_cols=86  Identities=19%  Similarity=0.104  Sum_probs=47.9

Q ss_pred             EEEEEeeCCCcccccchh----hhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----TAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|........    ..+  .-..+.+++|+|+....   +.......+....  + ..-+|+||.|...   
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~-i~giIlTKlD~~~---  254 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--G-LTGVILTKLDGDA---  254 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--C-CCEEEEeCccCcc---
Confidence            579999999954322111    111  12467789999986542   2333333333321  1 2357789999532   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcC
Q 027918          138 AVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                        ..-.+.......+.|+.++..
T Consensus       255 --rgG~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        255 --RGGAALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             --cccHHHHHHHHHCcCEEEEeC
Confidence              112255666777787766654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.63  E-value=0.00041  Score=47.90  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -.++|.|++|+|||+|++.+.+.-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.62  E-value=0.00052  Score=55.98  Aligned_cols=143  Identities=20%  Similarity=0.257  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC-CC----C-----Cc------------ccceeeeEEEEE-E-E----ECCeEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS-FT----T-----SF------------ITTIGIDFKIRT-I-E----LDGKRIKLQ   67 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~-~~----~-----~~------------~~~~~~~~~~~~-~-~----~~~~~~~~~   67 (217)
                      .-|+|+|++|+||||++.+|.... ..    .     +.            ....+....... . .    .......+.
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            458899999999999999886421 00    0     00            001111111000 0 0    011125789


Q ss_pred             EeeCCCcccccc----hhhhccc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918           68 IWDTAGQERFRT----ITTAYYR-----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA  138 (217)
Q Consensus        68 l~Dt~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~  138 (217)
                      |+||+|......    .+..++.     ..+-.++|+|++...  +.+......+...    -+--+|+||.|-..    
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~----  373 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD----  373 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC----
Confidence            999999643211    1122221     234578899987653  2333333333221    23368899999422    


Q ss_pred             cChHHHHHHHHHhCCeEEEEcC--CCCCCHHHH
Q 027918          139 VPTSKGQALADEYGIKFFETSA--KTNLNVEQV  169 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~l  169 (217)
                       ..=.+..+....+.|+..++.  .=.+++...
T Consensus       374 -~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A  405 (432)
T PRK12724        374 -FLGSFLELADTYSKSFTYLSVGQEVPFDILNA  405 (432)
T ss_pred             -CccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence             223355566677777655543  333444443

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.57  E-value=0.00047  Score=45.18  Aligned_cols=82  Identities=16%  Similarity=0.174  Sum_probs=49.9

Q ss_pred             EEEEc-CCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           18 LLLIG-DSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        18 I~v~G-~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      |.|.| ..|+||||+...+...-.. ...+.       ..+..+.. ..+.|+|+|+...  ......+..+|.++++++
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            56777 5689999997776542211 11111       11122211 5789999998643  223356778999999888


Q ss_pred             CCChhhHHHHHHHHH
Q 027918           97 VTDESSFNNIRNWIR  111 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~  111 (217)
                      .+ ..++..+..+++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 455666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00029  Score=61.51  Aligned_cols=153  Identities=14%  Similarity=0.117  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC--C-cccceeeeEEE---------------EEEE-E-----------CCeEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFKI---------------RTIE-L-----------DGKRIKL   66 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~--~-~~~~~~~~~~~---------------~~~~-~-----------~~~~~~~   66 (217)
                      -|+++|+.|+||||++.+|.......  . .....+.+.+-               ..+. .           .-....+
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~  266 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL  266 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence            58999999999999999987532100  0 00000011000               0000 0           0012478


Q ss_pred             EEeeCCCccccc----chhhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC
Q 027918           67 QIWDTAGQERFR----TITTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP  140 (217)
Q Consensus        67 ~l~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~  140 (217)
                      .|+||+|.....    .....+  ....+-.++|+|++...  +.+......+...... -+--+|+||.|-..     .
T Consensus       267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~~-~i~glIlTKLDEt~-----~  338 (767)
T PRK14723        267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAGE-DVDGCIITKLDEAT-----H  338 (767)
T ss_pred             EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhcccC-CCCEEEEeccCCCC-----C
Confidence            999999933221    111111  12345678899887532  3333333333322111 13367899999432     2


Q ss_pred             hHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHH
Q 027918          141 TSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQ  179 (217)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~  179 (217)
                      .=.+..+....+.|+.+++  +|.+| +++    -+.+.+.+..
T Consensus       339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~  380 (767)
T PRK14723        339 LGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA  380 (767)
T ss_pred             ccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence            3344556667777766654  45555 343    2445555554

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.53  E-value=7.3e-05  Score=54.14  Aligned_cols=23  Identities=30%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+|+|+|+|||||||+...|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK08118 topology modulation protein; Reviewed

Probab=97.52  E-value=8.1e-05  Score=53.43  Aligned_cols=22  Identities=41%  Similarity=0.720  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +|+|+|++|||||||...|...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999999864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.51  E-value=8.4e-05  Score=50.16  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999874

...

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.50  E-value=0.015  Score=41.44  Aligned_cols=144  Identities=12%  Similarity=0.110  Sum_probs=96.2

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      +.+..+.-.|+++|..+.++..|...+......          +. ..+.... ...     .|.  +...    .-...
T Consensus         9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~-l~Vh~a~-sLP-----Lp~--e~~~----lRprI   65 (176)
T PF11111_consen    9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE----------FK-LKVHLAK-SLP-----LPS--ENNN----LRPRI   65 (176)
T ss_pred             cCCCcceeEEEEecccHHHHHHHHHHHHhhccc----------ee-EEEEEec-cCC-----Ccc--cccC----CCcee
Confidence            445567789999999999999999999863211          11 1111110 000     011  1111    12468


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |.++|++|.....++..++.-+..+...+-.+ .+.++++-.... ..-.+..+++.+++..+.++++.+.....++...
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~fflG-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFLG-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhcc-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            99999999999999998888777775444333 355666555432 2456788999999999999999999888877666


Q ss_pred             HHHHHHHHH
Q 027918          169 VFFSIARDI  177 (217)
Q Consensus       169 l~~~l~~~~  177 (217)
                      +-..|.+.+
T Consensus       144 lAqRLL~~l  152 (176)
T PF11111_consen  144 LAQRLLRML  152 (176)
T ss_pred             HHHHHHHHH
Confidence            666665554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.46  E-value=0.0013  Score=55.53  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      =+++.||+|+||||.++.|...
T Consensus        47 iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.46  E-value=0.00066  Score=50.61  Aligned_cols=47  Identities=19%  Similarity=0.123  Sum_probs=33.2

Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      +.....+|.+|+|+|.+. +++...++.........  -.++.+|+||.|
T Consensus       150 Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg--~k~i~~V~NKv~  196 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG--IKRIFVVLNKVD  196 (255)
T ss_pred             cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC--CceEEEEEeecc
Confidence            345578999999999974 56666655544444442  268999999998

>PRK07261 topology modulation protein; Provisional

Probab=97.45  E-value=0.00012  Score=52.85  Aligned_cols=22  Identities=45%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +|+|+|++|||||||.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.002  Score=52.46  Aligned_cols=90  Identities=13%  Similarity=0.083  Sum_probs=49.9

Q ss_pred             EEEEEeeCCCcccccc----hhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRT----ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      ..+.|+||+|......    ....++..   .+-.++|+|++...  ..+...+......    .+--+++||.|-..  
T Consensus       255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~~----~~~~~I~TKlDet~--  326 (388)
T PRK12723        255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSPF----SYKTVIFTKLDETT--  326 (388)
T ss_pred             CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence            5799999999553322    11122221   22578899987653  3444433333221    23468899999422  


Q ss_pred             CccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918          137 RAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                         ..=.+..++...+.|+..++  +|.++
T Consensus       327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        327 ---CVGNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence               22334455666677665543  45555

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.44  E-value=0.00028  Score=58.73  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=75.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCC--C-cccceeeeEE------------------EEEEEE---------CCeEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTT--S-FITTIGIDFK------------------IRTIEL---------DGKRIK   65 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~--~-~~~~~~~~~~------------------~~~~~~---------~~~~~~   65 (217)
                      --|+++|++|+||||++..|.......  . .......+.+                  ......         +-....
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d  336 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH  336 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence            369999999999999999987521100  0 0000000110                  000000         001136


Q ss_pred             EEEeeCCCcccccc---hhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc
Q 027918           66 LQIWDTAGQERFRT---ITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV  139 (217)
Q Consensus        66 ~~l~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~  139 (217)
                      +.++||+|......   .....+..   ..-.++|+|++...  ..+......+..    ...--+|+||.|-..     
T Consensus       337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~----~~~~g~IlTKlDet~-----  405 (484)
T PRK06995        337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG----PGLAGCILTKLDEAA-----  405 (484)
T ss_pred             eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc----CCCCEEEEeCCCCcc-----
Confidence            78999999332221   11111111   22367888886432  333333222222    123467789999422     


Q ss_pred             ChHHHHHHHHHhCCeEEEEcCCCCCCH-HHH----HHHHHHHHHH
Q 027918          140 PTSKGQALADEYGIKFFETSAKTNLNV-EQV----FFSIARDIKQ  179 (217)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l----~~~l~~~~~~  179 (217)
                      ..-.+..+....+.++.+++  +|.++ +++    -+.|++.+..
T Consensus       406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~  448 (484)
T PRK06995        406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC  448 (484)
T ss_pred             cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence            33445566677777766554  56666 444    2445555554

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.43  E-value=0.00075  Score=46.88  Aligned_cols=105  Identities=17%  Similarity=0.192  Sum_probs=60.7

Q ss_pred             EEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC
Q 027918           19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        19 ~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~   98 (217)
                      +.-|..|+|||++.-.+...-. .......-.+..   .........+.++|+|+..  .......+..+|.++++.+.+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence            3457889999999666543211 000111111110   0001111578999999753  333456788899999998886


Q ss_pred             ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           99 DESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        99 ~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                       ..++..+...++.+..... ..++.+|+|+.+
T Consensus        78 -~~s~~~~~~~l~~l~~~~~-~~~~~lVvN~~~  108 (139)
T cd02038          78 -PTSITDAYALIKKLAKQLR-VLNFRVVVNRAE  108 (139)
T ss_pred             -hhHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence             3445555555555544332 457789999987

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.42  E-value=0.00094  Score=51.62  Aligned_cols=132  Identities=19%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC---------C------------CcccceeeeEEEEEEEE-----------CCeE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT---------T------------SFITTIGIDFKIRTIEL-----------DGKR   63 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~---------~------------~~~~~~~~~~~~~~~~~-----------~~~~   63 (217)
                      -+|+++|++|+||||++..+...-..         .            .+....+..+... ...           ....
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~  154 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR  154 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence            58999999999999998887542100         0            0000011111100 000           0013


Q ss_pred             EEEEEeeCCCcccccch----hhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.......    +..++  ...+-+++|+|++...  +++..++..+...    .+--+++||.|-..   
T Consensus       155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~~----~~~~~I~TKlDet~---  225 (270)
T PRK06731        155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKDI----HIDGIVFTKFDETA---  225 (270)
T ss_pred             CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence            68899999996532211    12222  2345688899986432  3344444444321    23468899999432   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEc
Q 027918          138 AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                        ..-.+..++...+.|+..++
T Consensus       226 --~~G~~l~~~~~~~~Pi~~it  245 (270)
T PRK06731        226 --SSGELLKIPAVSSAPIVLMT  245 (270)
T ss_pred             --CccHHHHHHHHHCcCEEEEe
Confidence              22344455666777765554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.42  E-value=0.0022  Score=46.44  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            78999999999999999999853

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.40  E-value=0.0013  Score=52.69  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.+|.|.-|||||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4788899999999999999753

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.40  E-value=3.8e-05  Score=56.96  Aligned_cols=69  Identities=17%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             EEEEEEeeCCCcccc----cchh--hhcccCCcEEEEEEeCCC------hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918           63 RIKLQIWDTAGQERF----RTIT--TAYYRGAMGILLVYDVTD------ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA  130 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~----~~~~--~~~~~~~d~~i~v~d~~~------~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~  130 (217)
                      +-.+.++|+||+-+.    .+++  -..+.+.+.-+.++.+.|      +..  .+..++..+........|-|=|+.|+
T Consensus        96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~--~iS~lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSK--FISSLLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHH--HHHHHHHHHHHHHhhcccchhhhhHh
Confidence            347889999997653    2222  123334555555555433      433  34444445555554468889999999


Q ss_pred             CCC
Q 027918          131 DMD  133 (217)
Q Consensus       131 Dl~  133 (217)
                      |+.
T Consensus       174 Dl~  176 (290)
T KOG1533|consen  174 DLL  176 (290)
T ss_pred             HHH
Confidence            974

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.39  E-value=0.00087  Score=44.23  Aligned_cols=99  Identities=15%  Similarity=0.110  Sum_probs=58.0

Q ss_pred             cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh
Q 027918           22 GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES  101 (217)
Q Consensus        22 G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~  101 (217)
                      +..|+||||+...|...-.........-.     ....... ..+.|+|+|+...  ......+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~-----d~d~~~~-~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLV-----DLDLQFG-DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEE-----ECCCCCC-CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence            45679999987766542111101111111     1111111 1789999998643  23345667889999888776 45


Q ss_pred             hHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 027918          102 SFNNIRNWIRNIEQHASD-NVNKVLVGNK  129 (217)
Q Consensus       102 s~~~~~~~~~~l~~~~~~-~~pvivv~nK  129 (217)
                      +...+..+++.+...... ...+.+|+|+
T Consensus        78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            667777777777665433 3466777774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.38  E-value=0.00014  Score=50.50  Aligned_cols=20  Identities=40%  Similarity=0.682  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+++|+||||||||++.|..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999985

...

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.29  E-value=0.011  Score=42.65  Aligned_cols=84  Identities=13%  Similarity=-0.001  Sum_probs=51.1

Q ss_pred             EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027918           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  144 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~  144 (217)
                      .+.|+|+|+....  .....+..+|.+|++++.+. .++..+..+++.+....  .....+|+|+.+-..   ....+..
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~---~~~~~~~  135 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDM---VEGGDMV  135 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCcccc---cchhhHH
Confidence            6899999975432  23445678999999988764 44555556666665432  234678899988422   1222223


Q ss_pred             HHHHHHhCCeEE
Q 027918          145 QALADEYGIKFF  156 (217)
Q Consensus       145 ~~~~~~~~~~~~  156 (217)
                      ..+.+..+.+++
T Consensus       136 ~~~~~~~~~~v~  147 (179)
T cd02036         136 EDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHhCCCEE
Confidence            445555666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.28  E-value=0.00028  Score=42.67  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++.|.+|+||||+.+.|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.27  E-value=0.003  Score=45.73  Aligned_cols=85  Identities=21%  Similarity=0.218  Sum_probs=59.4

Q ss_pred             EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027918           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS  142 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~  142 (217)
                      .+.+.|+|+|+...  ......+..+|.+++++..+. .+...+..+++.+...   +.|+.+|+|+.|...    ....
T Consensus        92 ~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~----~~~~  161 (179)
T cd03110          92 GAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLND----EIAE  161 (179)
T ss_pred             CCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCc----chHH
Confidence            36899999997542  233455678999999998874 4566666766666554   567889999998532    2345


Q ss_pred             HHHHHHHHhCCeEEE
Q 027918          143 KGQALADEYGIKFFE  157 (217)
Q Consensus       143 ~~~~~~~~~~~~~~~  157 (217)
                      +..++.+..+++++-
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            667777777877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.27  E-value=0.00014  Score=56.36  Aligned_cols=100  Identities=19%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------------------
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------------------   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------------------   76 (217)
                      .+++|+|++|.|||++++++....-.. .... .            ..+.+..+.+|....                   
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~-~d~~-~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~  127 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQ-SDED-A------------ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR  127 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCC-CCCC-C------------ccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence            589999999999999999998754221 1111 0            112444444543111                   


Q ss_pred             -----ccchhhhcccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcC-CCCcEEEEEeC
Q 027918           77 -----FRTITTAYYRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHAS-DNVNKVLVGNK  129 (217)
Q Consensus        77 -----~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~-~~~pvivv~nK  129 (217)
                           ........++...+-++|+|--..   .+....+..++.++.... -++|+|.||+.
T Consensus       128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence                 112223466778888999985431   233444455555554432 36899999986

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.25  E-value=0.00022  Score=50.89  Aligned_cols=22  Identities=18%  Similarity=0.501  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ||+|+|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999865

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.25  E-value=0.00027  Score=52.07  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|++|||||||++++.+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            68999999999999999998743

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.23  E-value=0.00015  Score=57.85  Aligned_cols=81  Identities=19%  Similarity=0.176  Sum_probs=50.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc--chhhhcccCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--TITTAYYRGAM   89 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~d   89 (217)
                      ..-|-|.++|.||+||||+||+|-...+. ..+.++.+.--.+  +.   ....+.|+|+||.---.  +.....+   -
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY--It---LmkrIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY--IT---LMKRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH--HH---HHhceeEecCCCccCCCCCchHHHHh---h
Confidence            34589999999999999999999887665 4445554311111  11   12478899999953221  2222222   2


Q ss_pred             EEEEEEeCCChh
Q 027918           90 GILLVYDVTDES  101 (217)
Q Consensus        90 ~~i~v~d~~~~~  101 (217)
                      +++=|=.+.+++
T Consensus       377 GvVRVenv~~pe  388 (572)
T KOG2423|consen  377 GVVRVENVKNPE  388 (572)
T ss_pred             ceeeeeecCCHH
Confidence            455666666654

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.23  E-value=0.00038  Score=40.85  Aligned_cols=21  Identities=38%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+|.|+.|+|||||+..+.-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999987754

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.21  E-value=0.00031  Score=52.52  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -|+|+|++|||||||+|.+.+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            58999999999999999998743

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.19  E-value=0.00033  Score=52.74  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      =|.|+|++|+|||||++.+.+-
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.18  E-value=0.00033  Score=48.36  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            6899999999999999999875

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.17  E-value=0.00037  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|+.|+|||||+..|++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999874

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.16  E-value=0.0003  Score=50.60  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .=++|.||+|+|||||++.|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            458999999999999999999866

>PRK06217 hypothetical protein; Validated

Probab=97.15  E-value=0.00043  Score=50.43  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+|+|+|.+|||||||..+|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.14  E-value=0.0004  Score=47.39  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            789999999999999999875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.14  E-value=0.00045  Score=47.25  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTT   42 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~   42 (217)
                      -.++|+|++|+|||+++..+...-...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            379999999999999999998765443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK03839 putative kinase; Provisional

Probab=97.14  E-value=0.00038  Score=50.52  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +|+|+|.|||||||+.+.|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999764

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.00067  Score=54.10  Aligned_cols=95  Identities=16%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC----CCC------CCc-----------ccceeeeEEEEEEEE-------------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG----SFT------TSF-----------ITTIGIDFKIRTIEL-------------   59 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~----~~~------~~~-----------~~~~~~~~~~~~~~~-------------   59 (217)
                      .+--|+++|..|+||||.+-+|...    .+.      .+.           ..-..+.++......             
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            3346899999999999998887541    000      000           000011111110111             


Q ss_pred             CCeEEEEEEeeCCCcccccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHH
Q 027918           60 DGKRIKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRN  108 (217)
Q Consensus        60 ~~~~~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~  108 (217)
                      ....+.+.|+||+|...... +..     .-.-..|-+|+|.|++-..+-+....
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~  234 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR  234 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence            22237899999999433211 111     11235789999999987765444444

>PRK01889 GTPase RsgA; Reviewed

Probab=97.11  E-value=0.00049  Score=55.51  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|.+|+|||||+|.|.+..
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhc
Confidence            79999999999999999998743

>PRK14530 adenylate kinase; Provisional

Probab=97.08  E-value=0.0005  Score=51.45  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+|+|+|+|||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999964

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.08  E-value=0.00051  Score=49.35  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+.|+|++|+|||||+|.+.+
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEEECCCCccHHHHHHHHHh
Confidence            799999999999999999987

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.08  E-value=0.0021  Score=44.09  Aligned_cols=22  Identities=41%  Similarity=0.656  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.08  E-value=0.00053  Score=50.11  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|||||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.06  E-value=0.00055  Score=47.44  Aligned_cols=21  Identities=52%  Similarity=0.775  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999874

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.06  E-value=0.00051  Score=49.79  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4799999999999999998765

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.06  E-value=0.00052  Score=46.61  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

...

>PRK13949 shikimate kinase; Provisional

Probab=97.05  E-value=0.00057  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +|+|+|++||||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999988753

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.04  E-value=0.0033  Score=46.41  Aligned_cols=22  Identities=36%  Similarity=0.472  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~   39 (217)
                      |+|+|++||||||+++.+++..
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00235 udk uridine kinase

Probab=97.04  E-value=0.00083  Score=49.96  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +...-|+|+|++|||||||++.|.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            33467999999999999999999863

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.01  E-value=0.00049  Score=47.64  Aligned_cols=25  Identities=32%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...++|+|.|-||+|||||..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            3457999999999999999999974

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.01  E-value=0.00065  Score=44.70  Aligned_cols=20  Identities=45%  Similarity=0.763  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~   36 (217)
                      -++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            58999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.00  E-value=0.003  Score=50.13  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..+|+|.|.+|||||||++.|+...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999998743

>PRK14532 adenylate kinase; Provisional

Probab=97.00  E-value=0.00065  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++|+++|+|||||||+..+|...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=96.99  E-value=0.00028  Score=61.01  Aligned_cols=121  Identities=14%  Similarity=0.148  Sum_probs=73.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE--------------------------------------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK--------------------------------------   53 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~--------------------------------------   53 (217)
                      .-..+.|+|+|..++||||.++.+.+..+.+......+....                                      
T Consensus        26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~  105 (657)
T KOG0446|consen   26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS  105 (657)
T ss_pred             cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence            355679999999999999999999885543321111110000                                      


Q ss_pred             ---------------EEEEEE-CCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEEEEEEeCCChhhHH
Q 027918           54 ---------------IRTIEL-DGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGILLVYDVTDESSFN  104 (217)
Q Consensus        54 ---------------~~~~~~-~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~  104 (217)
                                     ...+.+ .-.-..++++|.||..             .+..+...|+...+.+|+.+...+.+  -
T Consensus       106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~  183 (657)
T KOG0446|consen  106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--I  183 (657)
T ss_pred             hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--h
Confidence                           111111 1112578889999832             24556677888888888887765522  1


Q ss_pred             HHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918          105 NIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus       105 ~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      ....++.......+.+.-.+.|++|.|+.+
T Consensus       184 ats~alkiarevDp~g~RTigvitK~Dlmd  213 (657)
T KOG0446|consen  184 ATSPALVVAREVDPGGSRTLEVITKFDFMD  213 (657)
T ss_pred             hcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence            122255555555555666777888888643

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.98  E-value=0.0026  Score=49.97  Aligned_cols=142  Identities=18%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCC----CCCC-------------c----ccceeeeEEEEE-------EEE------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGS----FTTS-------------F----ITTIGIDFKIRT-------IEL------   59 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~----~~~~-------------~----~~~~~~~~~~~~-------~~~------   59 (217)
                      .++-|+++|-.|+||||-|-+|...-    ...-             .    -.-.+.++-...       +-+      
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A  217 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA  217 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence            46789999999999999998885510    0000             0    000000110000       001      


Q ss_pred             CCeEEEEEEeeCCCcccccch-------hhhcccC-----CcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEE
Q 027918           60 DGKRIKLQIWDTAGQERFRTI-------TTAYYRG-----AMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLV  126 (217)
Q Consensus        60 ~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~-----~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv  126 (217)
                      ....+.+.|+||+|.......       ..+....     .|=+++++|++.... +...+.+    .....   ---++
T Consensus       218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F----~eav~---l~GiI  290 (340)
T COG0552         218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF----NEAVG---LDGII  290 (340)
T ss_pred             HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH----HHhcC---CceEE
Confidence            112368999999994322111       1112222     233777779887643 4433332    22211   12577


Q ss_pred             EeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       127 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +||.|... ....    +..++...++|+.++-.  |+++++|
T Consensus       291 lTKlDgtA-KGG~----il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         291 LTKLDGTA-KGGI----ILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             EEecccCC-Ccce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence            89999532 2222    22356777888777643  5555655

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.98  E-value=0.00073  Score=51.11  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +..++++|+|.+|||||+|+..|+..
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHh
Confidence            34579999999999999999988764

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.98  E-value=0.00069  Score=49.10  Aligned_cols=22  Identities=36%  Similarity=0.576  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.98  E-value=0.0022  Score=52.12  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=21.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...+..|+++|..||||||..-+|..
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~  122 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAK  122 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHH
Confidence            34557899999999999999887754

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.97  E-value=0.0013  Score=48.99  Aligned_cols=25  Identities=32%  Similarity=0.554  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...-|+|+|++|+|||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3456889999999999999999754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.97  E-value=0.00069  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|+|++||||||+++.|..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.95  E-value=0.00074  Score=46.78  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988763

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=96.95  E-value=0.0091  Score=46.70  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~   36 (217)
                      -|+|.|.+||||||+++.|.
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999995

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.95  E-value=0.00072  Score=51.59  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|+.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999987

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.95  E-value=0.00085  Score=48.57  Aligned_cols=21  Identities=33%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+|+.|+|||||++.++.
T Consensus        23 ~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          23 LVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            799999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=0.00031  Score=52.94  Aligned_cols=84  Identities=14%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhccc----CCc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYR----GAM   89 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~----~~d   89 (217)
                      ...|++.|..+  +|++|++.+.+.-.. ..++...+|.+..-.-.+ ..--.++|+.+|......+..--+.    ..-
T Consensus        45 E~~I~~~Gn~~--~tt~I~~~FdR~e~~-~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~  121 (363)
T KOG3929|consen   45 EFFIGSKGNGG--KTTIILRCFDRDEPP-KPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF  121 (363)
T ss_pred             eeEEEEecCCc--eeEeehhhcCcccCC-CCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh
Confidence            36788888665  599999999865433 355566666554433222 3345789999997655443322221    123


Q ss_pred             EEEEEEeCCChh
Q 027918           90 GILLVYDVTDES  101 (217)
Q Consensus        90 ~~i~v~d~~~~~  101 (217)
                      .+|++.|+++++
T Consensus       122 slIL~LDls~p~  133 (363)
T KOG3929|consen  122 SLILVLDLSKPN  133 (363)
T ss_pred             hheeeeecCChH
Confidence            488999999864

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.0093  Score=48.82  Aligned_cols=30  Identities=30%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ....+..-+|+|||+.|+|||||+..|++.
T Consensus       607 dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk  636 (807)
T KOG0066|consen  607 DFGIDMDSRIAIVGPNGVGKSTLLKLLIGK  636 (807)
T ss_pred             cccccccceeEEECCCCccHHHHHHHHhcC
Confidence            344556679999999999999999999874

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.94  E-value=0.00083  Score=49.10  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|+|++|||||||++.|++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            37999999999999999999874

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK00625 shikimate kinase; Provisional

Probab=96.93  E-value=0.0008  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +|+++|.+||||||+.+.|...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~   23 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKF   23 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998653

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.93  E-value=0.0043  Score=49.54  Aligned_cols=25  Identities=12%  Similarity=0.167  Sum_probs=22.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..+|+|.|++|||||||++.|+..-
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~i  184 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998643

>PRK14531 adenylate kinase; Provisional

Probab=96.93  E-value=0.00088  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+|+++|+|||||||+...|...
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998653

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.92  E-value=0.001  Score=50.22  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+|+|+|||||||+...|..
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999999865

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.92  E-value=0.00076  Score=49.75  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |.|.|++|||||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.92  E-value=0.00076  Score=53.53  Aligned_cols=21  Identities=43%  Similarity=0.612  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++++|++|||||||++.+.+-
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            889999999999999999884

>PRK02496 adk adenylate kinase; Provisional

Probab=96.91  E-value=0.00097  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.549  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+|+|+|+|||||||+.+.|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999753

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=96.90  E-value=0.006  Score=47.19  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -|+|.|++|+||||+++.++...
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            48999999999999999987653

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00085  Score=51.01  Aligned_cols=21  Identities=43%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -+.|+|+.|+|||||++.+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999998

>PRK04195 replication factor C large subunit; Provisional

Probab=96.90  E-value=0.0046  Score=52.11  Aligned_cols=24  Identities=38%  Similarity=0.560  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -.++|.|++|+||||+++.+.+..
T Consensus        40 ~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         40 KALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            469999999999999999998753

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.90  E-value=0.00086  Score=50.08  Aligned_cols=21  Identities=43%  Similarity=0.649  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|+|++|||||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            699999999999999999987

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.90  E-value=0.00093  Score=50.05  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|+|||||++.+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.90  E-value=0.01  Score=44.55  Aligned_cols=102  Identities=8%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT  141 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~  141 (217)
                      +.+.|+|+.|...  ......+..+|.+|+=.-.+..+.-+  ..-.|+..+......++|.-|+.|++.-.  ......
T Consensus        84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~--~~~~~~  159 (231)
T PF07015_consen   84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAA--RLTRAQ  159 (231)
T ss_pred             CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcc--hhhHHH
Confidence            5789999988643  23444566899888866665433322  22234455545455578999999998631  111122


Q ss_pred             HHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918          142 SKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ..+.++..  ++|++.+...+-.-+.+++.
T Consensus       160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  160 RIISEQLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence            23334433  48888888877666666654

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK08233 hypothetical protein; Provisional

Probab=96.88  E-value=0.00091  Score=48.47  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +-|+|.|.+|||||||.+.|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56888999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	217
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		7e-61
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		6e-60
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-54
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		5e-54
4fmc_B	171	Espg-Rab1 Complex Length = 171		7e-54
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-53
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-53
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-53
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-53
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-53
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		7e-53
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		8e-53
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-52
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-51
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-50
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-49
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-48
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		5e-48
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		3e-46
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-46
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		7e-46
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-44
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-42
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-42
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-41
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-41
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-41
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		3e-40
4fmc_F	117	Espg-Rab1 Complex Length = 117		7e-40
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-39
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-39
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-39
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-39
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-38
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-38
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-38
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-38
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-38
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-37
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-37
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		7e-36
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-35
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		4e-35
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-35
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-34
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-34
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-34
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-34
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		2e-34
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-34
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-34
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		4e-34
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-34
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-34
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-34
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		8e-34
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		9e-34
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-33
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-33
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-33
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-33
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		8e-33
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-32
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-32
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-32
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-32
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-32
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		8e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-31
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		5e-31
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-31
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		1e-30
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-30
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-29
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-28
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-27
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-27
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-27
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		5e-27
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		6e-27
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-26
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		3e-26
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-25
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		8e-25
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		3e-24
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-24
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-24
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		5e-24
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-24
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-24
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-23
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		1e-23
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-23
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-23
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		3e-23
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-22
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-22
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-22
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-21
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-21
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		5e-21
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-21
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-21
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		9e-21
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-20
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-20
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-20
4q21_A	189	Molecular Switch For Signal Transduction: Structura		3e-20
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-19
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-19
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		6e-19
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-19
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		8e-19
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		8e-19
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		8e-19
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-19
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-18
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-18
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-18
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-18
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-18
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-18
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-18
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-18
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-18
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-18
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-18
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		3e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-18
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-18
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-18
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-18
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		4e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		4e-18
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-18
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		4e-18
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		5e-18
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		7e-18
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		7e-18
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		7e-18
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-18
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		8e-18
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		9e-18
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-18
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		9e-18
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		9e-18
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-18
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		9e-18
1byu_A	216	Canine Gdp-Ran Length = 216		9e-18
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-17
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-17
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-17
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-17
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-17
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-17
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-17
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-17
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		2e-17
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-17
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		8e-17
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-16
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-16
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-16
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-16
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-16
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-16
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-15
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-15
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		4e-15
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		4e-15
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		4e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-15
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-15
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		5e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		5e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		5e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-15
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		6e-15
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-15
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		7e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-14
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		3e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-14
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		6e-14
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-14
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-14
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		8e-14
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		8e-14
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		8e-14
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		9e-14
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		9e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		9e-14
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-13
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-13
1mh1_A	186	Small G-Protein Length = 186		1e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-13
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-13
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		4e-13
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		5e-13
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		5e-13
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		5e-13
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-13
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-13
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-13
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-12
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		1e-12
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-12
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-12
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-12
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-12
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		8e-11
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		9e-11
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-10
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		2e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		2e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		2e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		2e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		2e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-10
2kb0_A	178	Cdc42(T35a) Length = 178		2e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-10
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-10
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		2e-10
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-10
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		2e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		2e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-09
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-08
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		9e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-07
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		9e-07
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		2e-06
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-06
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-05
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-05
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		3e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-05
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		9e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-04
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		1e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		2e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		3e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		4e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		4e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		4e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		4e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		4e-04

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  229 bits (585), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 133/170 (78%), Gaps = 1/170 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 125 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  226 bits (577), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 132/169 (78%), Gaps = 1/169 (0%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTA
Sbjct: 4   DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           ++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 124 ND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/186 (56%), Positives = 132/186 (70%), Gaps = 3/186 (1%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRS 188
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+    T   +
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGA 190
Query: 189 EPSTIK 194
           E S +K
Sbjct: 191 EKSNVK 196

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  207 bits (526), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 101/171 (59%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  206 bits (524), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/171 (59%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 121
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 122 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/172 (58%), Positives = 126/172 (73%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 140
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+ 
Sbjct: 141 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  205 bits (521), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGK+CLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 12  EYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 71
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 72  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 132 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/171 (57%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 125 DL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/171 (59%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTI L+ K +KLQIWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD  SF+N++ WI+ I+++A +NVNK+LVGNK 
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKC 124
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  SKR V + +G+ LAD +GIKF ETSAK   NVEQ F ++A +IK+R+
Sbjct: 125 DL-VSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  203 bits (516), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 101/170 (59%), Positives = 124/170 (72%), Gaps = 1/170 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 29  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 88
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK 
Sbjct: 89  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F + A +IK+R
Sbjct: 149 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 100/171 (58%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVG K 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 124 DL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  199 bits (507), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 1/165 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTK 119
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           + V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R+
Sbjct: 120 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  197 bits (501), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 91/170 (53%), Positives = 126/170 (74%), Gaps = 2/170 (1%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDT
Sbjct: 17  YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+D
Sbjct: 77  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           M+   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 137 ME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 90/169 (53%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 124/168 (73%), Gaps = 2/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAG
Sbjct: 6   SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+
Sbjct: 66  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 125
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
              R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 126 --TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 171

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQIWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITTAYYRGA GI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  187 bits (474), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 122/169 (72%), Gaps = 2/169 (1%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITTAYYRGA GI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+D 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+ + KR V     +  AD   + F ETSA  + NVE  F ++AR IK+ ++
Sbjct: 124 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+ + KR V     +  AD   + F ETSA  + NVE  F ++AR IK+ ++
Sbjct: 124 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  179 bits (455), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 117/169 (69%), Gaps = 1/169 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK 
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 136
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           D+ + KR V     +  AD   + F ETSA  + NVE  F ++AR IK+
Sbjct: 137 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  174 bits (441), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           ++D + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWD
Sbjct: 19  NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK 
Sbjct: 79  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           DM+E +R VPT KGQ LA++ G  FFE SAK N++V Q F  +   I  +++D+
Sbjct: 139 DMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/160 (52%), Positives = 109/160 (68%), Gaps = 2/160 (1%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V ++LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           D D  ++ V T      A + GI+ FETSAK N+NVE++F
Sbjct: 124 D-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           ++D + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           DM E +R V + +G+ LAD  G +FFE SAK N+NV+Q F
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           Y  L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           + ES+R V   +G+A A E+G+ F ETSAKT  NVE+ F + A++I ++
Sbjct: 127 L-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQ
Sbjct: 21  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 80
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           E FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ E
Sbjct: 81  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-E 139
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           S+R V   +G+A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   +LVGNK D+
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
            E +R VP   G+ LAD+ G +FFE SAK N+NV+QVF
Sbjct: 140 -EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 115/170 (67%), Gaps = 2/170 (1%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXX-XXXKIRTIELDGKRIKLQIWD 70
           YD   K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK 
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R
Sbjct: 127 D-SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  159 bits (403), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 91/115 (79%)
Query: 18  LLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERF 77
           LLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           RTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/189 (42%), Positives = 116/189 (61%), Gaps = 1/189 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           +D   K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AG ER+RTITTAYYRGA G +L YD+T+E SFN +++W   I+ ++ DN   +LVGNK D
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS 191
             E +R V + +G+ LAD  G +FFE SAK N+NV+Q F  +   I ++ +++   ++P+
Sbjct: 125 X-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTADPA 183
Query: 192 TIKINQPDQ 200
                Q  Q
Sbjct: 184 VTGAKQGPQ 192

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 110/172 (63%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD L K++LIGDSGVGKS LL R                    RT+E++GKRIK QIWD
Sbjct: 9   DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWD 68
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+
Sbjct: 69  TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKS 128
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+    RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q+++
Sbjct: 129 DLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  157 bits (398), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+
Sbjct: 85  TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 145 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  157 bits (396), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 136
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 137 L-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/183 (44%), Positives = 114/183 (62%), Gaps = 6/183 (3%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI-----KQRLADTDS 186
           +    RAVPT + +A A++  + F ETSA  + NVE+ F +I  +I     ++++AD  +
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 180
Query: 187 RSE 189
             E
Sbjct: 181 HDE 183

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 25  EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 84
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+
Sbjct: 85  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 144
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 145 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 106/167 (63%), Gaps = 1/167 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 124 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  154 bits (388), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 7   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 66
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+
Sbjct: 67  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 126
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 127 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 1/167 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +YD L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+   LVGNK+
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKS 120
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 121 DL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  152 bits (384), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 111/170 (65%), Gaps = 2/170 (1%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDT
Sbjct: 26  YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTIT +YYR A G +L YD+T  SSF ++ +WI ++ ++A  N+ ++L+GNK+D
Sbjct: 86  AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 132 MDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQR 180
           + E  R V  ++ Q+LA+ Y I    ETSAK + NVE+ F  +A ++  R
Sbjct: 146 LSE-LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWD
Sbjct: 22  DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 81
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  VLVGNK 
Sbjct: 82  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           D+ E +R V   + +  ++   + + ETSAK + NVE++F  +A
Sbjct: 142 DLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  146 bits (369), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +Y  + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWD
Sbjct: 11  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKA
Sbjct: 71  TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           D+ E++R V   + +  A+E G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 131 DL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 102/160 (63%), Gaps = 1/160 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DYD L K++LIGDSGVGKS LL R                    RTIE++ K+IK QIWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DNV   L+GNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKS 125
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           D+    RAVPT + +  A E  + F ETSA  + NV++ F
Sbjct: 126 DL-AHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/171 (42%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           +Y  + K ++IGD GVGKSCLL +                    R IE+ G++IKLQIWD
Sbjct: 26  NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQ RFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKA
Sbjct: 86  TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+ E++R V   + +  A+E G+ F E SAKT  NVE  F   A+ I Q +
Sbjct: 146 DL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 195

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  143 bits (360), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D  +++++IG  GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTA
Sbjct: 24  DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +LVGNK D 
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 133 DESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
            E+ R +   +G+  A +  G++F E SAK N NV+++F  +  DI +++
Sbjct: 144 -ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 6   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 66  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 124
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 4   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 64  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            SKRAV   + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 2   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 61
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 62  QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 120
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            SKRAV   + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++L GD+ VGKS  L+R                  +++T+ +DG+R  LQ+WDTAGQER
Sbjct: 30  KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM---- 132
           FR+I  +Y+R A G+LL+YDVT E SF NIR W+  IE  A + V  +LVGNKAD+    
Sbjct: 90  FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTA 149
Query: 133 -DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             E ++ VP   G+ LA  YG  F ETSAK   N+ +    +AR++K+R
Sbjct: 150 ATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score =  140 bits (354), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/215 (38%), Positives = 125/215 (58%), Gaps = 13/215 (6%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
           DYD LIKLL +GDSGVGK+  L R                  + + +  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63  --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
             ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 180 RLADTDSRSE-PSTIKINQPDQAGGVGQAAQKSAC 213
           R+     +++ P T+      +  G   A +K AC
Sbjct: 186 RMEKCVEKTQVPDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  140 bits (353), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 118/195 (60%), Gaps = 13/195 (6%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-------- 62
           DYD LIKLL +GDSGVGK+  L R                  + + +  + +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 63  --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
             ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 140
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL+GNKAD+ + +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +
Sbjct: 141 NPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 180 RLADTDSRSE-PSTI 193
           R+     +++ P T+
Sbjct: 200 RMEQCVEKTQIPDTV 214

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  139 bits (351), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 6   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 65
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 66  QERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 124
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT+ NV ++F +IA+ + +
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 4   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
            ER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 64  LERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  139 bits (349), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/182 (41%), Positives = 109/182 (59%), Gaps = 12/182 (6%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL----------D 60
           DYD LIK L +GDSGVGK+ +L +                  + + +             
Sbjct: 7   DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGR 66
Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
           G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ HA S+
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL GNK+D+ E +RAV   + + LA++YGI +FETSA    N+      +   I +
Sbjct: 127 NPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185
Query: 180 RL 181
           R+
Sbjct: 186 RM 187

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 1/164 (0%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +T+ LD   +K +IWDTAG
Sbjct: 4   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 63
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
            ER+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+ 
Sbjct: 64  LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL- 122
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            SKRAV   + QA AD+  + F ETSAKT +NV ++F +IA+ +
Sbjct: 123 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 1/170 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 7   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 66
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D
Sbjct: 67  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +D + R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 127 LD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 8   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 67
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D
Sbjct: 68  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 127
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +D + R V   +    A E  + F ETSA T  +VE+ F   AR I
Sbjct: 128 LD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/195 (39%), Positives = 118/195 (60%), Gaps = 13/195 (6%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
           DYD LIKLL +GDSGVGK+  L R                  + + +  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63  --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
             ++ LQ+WDTAG ERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+   ++   I +
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
Query: 180 RLADTDSRSE-PSTI 193
           R+     +++ P T+
Sbjct: 186 RMEKCVEKTQVPDTV 200

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DY+ + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWD
Sbjct: 21  DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 80
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+
Sbjct: 81  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 140
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+ ++ R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 141 DLSQA-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 104/172 (60%), Gaps = 1/172 (0%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWD 70
           DY+ + K++LIG+SGVGK+ LL R                    RT+ L    +K QIWD
Sbjct: 6   DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWD 65
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +LVGNK+
Sbjct: 66  TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKS 125
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           D+ ++ R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 126 DLSQA-REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 176

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/169 (42%), Positives = 96/169 (56%), Gaps = 1/169 (0%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D L K L+IG +G GKSCLL +                    R + + GK +KLQIWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    AS N+  +L GNK D+
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D  +R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 143 D-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  134 bits (336), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 9/180 (5%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LR                    +++ LD   +K +IWDTAG
Sbjct: 7   CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAG 66
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T++ +F   + W++ +++ AS ++   L GNKAD+ 
Sbjct: 67  QERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADL- 125
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTI 193
            +KR V   + QA AD+  + F ETSAKT +NV  +F +IA+ +         +SEP  +
Sbjct: 126 ANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL--------PKSEPQNL 177

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  133 bits (334), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDT 71
           YD L K L+IG++G GKSCLL +                    + I + GK +KLQIWDT
Sbjct: 5   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 64
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AG ERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK D
Sbjct: 65  AGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD 124
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +D + R V   +    A E  + F ETSA T  +VE+ F   AR I
Sbjct: 125 LD-ADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 100/167 (59%), Gaps = 2/167 (1%)
Query: 12  YDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIEL-DGKRIKLQIWD 70
           YD L K++LIGDSGVGKS LL R                    ++I+L + K IK QIWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+R IT+AYYRGA+G LLVYD+T ++SF NI  W++ +  +A  N+  +LVGNK+
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+ +  R +  +     A +  + F ETSA    NVE  F  +  +I
Sbjct: 124 DL-KHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 103/171 (60%), Gaps = 6/171 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132
           ERFR ++   YYR    ++ VYD+T+ +SF+++  WI   +QH  ++++ ++LVGNK D+
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 180
             S   VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K  
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score =  130 bits (327), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 19/204 (9%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
           DYD LIKLL +GDSGVGK+  L R                  + + +  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63  --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
             ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE       + ++ 
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVE-------KSVET 178
Query: 180 RLADTDSRSEPSTIKINQPDQAGG 203
            L     R E    K   PD   G
Sbjct: 179 LLDLIXKRXEKCVEKTQVPDTVNG 202

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 12/169 (7%)
Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD--------GK 62
           DYD LIKLL +GDSGVGK+  L R                  + + +  D        GK
Sbjct: 7   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGK 66
Query: 63  --RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SD 119
             ++ LQ+WDTAG ERFR++TTA++R A G LL +D+T + SF N+RNW   ++ +A  +
Sbjct: 67  AFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCE 126
Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ 168
           N + VL+GNKAD+ + +R V   + + LA++YGI +FETSA T  NVE+
Sbjct: 127 NPDIVLIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 101/171 (59%), Gaps = 6/171 (3%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  R                  + R +++DG+RIK+Q+WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM 132
           ERFR ++   YYR    ++ VYD T+ +SF+++  WI   +QH  ++++ ++LVGNK D+
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIKQR 180
             S   VPT   Q  AD +    FETSAK    N +VE +F ++A  +K  
Sbjct: 149 -RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLKSH 198

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
Query: 11  DYDCL--IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQI 68
           D D L  +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL I
Sbjct: 9   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 68
Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-VNKVLVG 127
           WDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N +   LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           NK  +D+  R V  ++G   A ++   F E SAKT   V+  F  +   I Q
Sbjct: 129 NK--IDKENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/164 (39%), Positives = 93/164 (56%), Gaps = 2/164 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LR                    + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
             +R V   +G+ LA+E G+ FFETSAKT  NV  VF  I   I
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GKS L+LR                    +T+ ++   +K +IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           + ++   YYRGA   ++V+DVT+++SF   + W++ ++   + N+   L GNK+D+ ++ 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA- 132
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           R V     Q  A E G+ F ETSAKT  NV+++F+ IAR +
Sbjct: 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 100/174 (57%), Gaps = 10/174 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIK-LQIWDTAG 73
           ++K++++GDSGVGK+ L+ R                    + + +DG ++  +Q+WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK------VLVG 127
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA  NVN       V++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFPFVILG 125
Query: 128 NKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           NK D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 139
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 184

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 5/169 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            K++L+G+  VGK+ L+LR                    + + + GKR+ L IWDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK D+ E 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL-EK 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           +R V   + ++ A+  G K + TSAK N  +E++F     D+ +R+ +T
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL----DLCKRMIET 170

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T+    +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RF ++   YYRG+   ++VYD+T + SF  ++ W++ +++H  +N+   + GNK D+ + 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            R VP    +  A+  G    ETSAK  +N+E++F  I+R I
Sbjct: 144 -REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            R V     +  AD     F ETSAK  +N+ ++F  I+R I
Sbjct: 126 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           D +   R V T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E
Sbjct: 128 DFE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PSTIKINQPDQAGGVGQAAQKSACC 214
            P  IK+++ D+A    +A+ +S  C
Sbjct: 186 FPEPIKLDKNDRA----KASAESCSC 207

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  114 bits (286), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ R                    +T++   +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            R V     +  AD     F ETSAK  +N+ ++F  I+R I
Sbjct: 127 -REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 118/206 (57%), Gaps = 12/206 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           D++   R V T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PSTIKINQPDQAGGVGQAAQKSACC 214
            P  IK+++ ++A    +A+ +S  C
Sbjct: 186 FPEPIKLDKNERA----KASAESCSC 207

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 117/206 (56%), Gaps = 12/206 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           D++   R V T + QA    +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
Query: 190 -PSTIKINQPDQAGGVGQAAQKSACC 214
            P  IK+++ D+A    +A+ +S  C
Sbjct: 186 FPEPIKLDKNDRA----KASAESCSC 207

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD- 133
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           KR V T +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK 
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           D+ E  R V T + QA   + G   +FETSAK + NV   F    R I
Sbjct: 131 DIKE--RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 97/167 (58%), Gaps = 7/167 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ +                    + + +D + + +QIWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK 
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DMDESKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARD 176
           D++   R V T + QA    +  I +FETSAK  +NVEQ F +IAR+
Sbjct: 128 DLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 2/186 (1%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 132
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIK 194
           KR V   +G+  A E  + F ETSAK   NV+Q+F  +A  +    +  D SR +   IK
Sbjct: 133 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 192
Query: 195 INQPDQ 200
           + +P +
Sbjct: 193 LEKPQE 198

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + I+LQ+WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK 
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           D+  S+R V T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 129 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L K++L+GD GVGKS L+ R                    + +E+DG  + +QIWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
           ERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   V++GNK 
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           D+  S+R V T + QA   + G   +FETSAK   NV   F    R +
Sbjct: 127 DI--SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLAD- 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           KR +   +G+  A E  + F ETSAKT  NV+Q+F  +A
Sbjct: 122 KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVA 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 7/200 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 135
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD-SRSEPSTIK 194
           KR V   +G+  A E  + F ETSAK   NV+Q+F  +A  +    +  D SR +   IK
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSREDMIDIK 195
Query: 195 INQPDQAGGVGQAAQKSACC 214
           + +P +     Q   +  C 
Sbjct: 196 LEKPQE-----QPVSEGGCL 210

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++L+GD GVGKS L+ R                    R +E+DG+ + LQIWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKA 130
           ERF+++ T +YRGA   LL + V D  SF N+ NW +    +A     ++   V++GNK 
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 131 DMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
           D ++  R V T + Q    E G   + ETSAK + NV   F    R +
Sbjct: 127 DKED--RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 89/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 120
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 6   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 64
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKA 130
            E +  I   Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+
Sbjct: 65  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKS 123
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           D++E +R VP  + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 124 DLEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 6/170 (3%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 2   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 60
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKVLVGNKA 130
            E +  I   Y+R   G LLV+ +T+  SF      R  I  ++    D +  ++VGNK+
Sbjct: 61  LEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE-EDKIPLLVVGNKS 119
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           D++E +R VP  + ++ A+E+G+++ ETSAKT  NV++VFF + R+I+ +
Sbjct: 120 DLEE-RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTK 168

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 88/159 (55%), Gaps = 1/159 (0%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G+  VGK+ L+ R                    +T+ L+ + ++LQ+WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD- 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           KR V   +G+  A E  + F ETSAK   NV+Q+F  +A
Sbjct: 126 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ ++ R                    +T+ LD   ++LQ+WDTAGQER
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+  SF N   WI++I      +V   LVGNK D+ +  
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL- 121
Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           R V   +G   A EY   F ETSAK   N++ +F
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 61
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
           QE +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            E KR V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 122 -EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 75
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
           QE +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+
Sbjct: 76  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 136 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 63
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
           QE +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+
Sbjct: 64  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 71
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
           QE +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+
Sbjct: 72  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 132 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+  +
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--A 121
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q 
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 14  CLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAG 73
            L K++++G  GVGKS L L+                  + + + LDG+ +++ I DTAG
Sbjct: 5   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAG 63
Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD-NVNKVLVGNKADM 132
            E +  I   Y+R   G L V+ +T+  SF    ++   I +   D NV  +LVGNK+D+
Sbjct: 64  LEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 123
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R                    R I+++ + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD-MDE 134
            F  IT AYYRGA   +LV+  TD  SF  I +W   +     D +   LV NK D +D+
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALVQNKIDLLDD 124
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           S   +   + + LA    ++F+ TS K +LNV +VF  +A    Q+
Sbjct: 125 S--CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK+D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V T + Q LA  YGI F ETSAKT   V+  F+++ R+I++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL--P 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V T + Q LA  YGI F ETSAKT   V+  F+++ R+I++ 
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 81/149 (54%), Gaps = 13/149 (8%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQRLADTDSRSEPSTIKINQPDQAG 202
            R+I+Q              K+N PD++G
Sbjct: 160 VREIRQH----------KLRKLNPPDESG 178

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +D+V  +LVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 7   KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTEQ 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +D+V  +LVGNK D+ E 
Sbjct: 66  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-ED 124
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK+D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKSDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 49  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 109 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 166
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 167 VREIRQH 173

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 48  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 108 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 165
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 166 VREIRQH 172

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++                  + + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122
Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDI 177
           +R V   +GQ LA ++    F E+SAK+ +NV ++F+ + R I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGN+ D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNRCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+    R V T +   LA  YGI F ETSAKT   VE  F+++
Sbjct: 120 RVKDSDDVPMVLVGNKCDL--PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177
Query: 174 ARDIKQ 179
            R+I+Q
Sbjct: 178 VREIRQ 183

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
           +DG   +L I DTAGQE F  +   Y R   G LLV+ + D  SFN +      I +   
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            D+   VLVGNKAD+ ES+R VP S+  A    + + +FE SAK  LNV++ F  + R +
Sbjct: 112 RDDFPVVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
Query: 178 KQ 179
           ++
Sbjct: 171 RK 172

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   S++V  VLVGNK+D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   S++V  VLVGNK+D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 103 RVKDSEDVPMVLVGNKSDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 161 VREIRKH 167

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+ +Q 
Sbjct: 160 VREFRQH 166

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG+E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 92/169 (54%), Gaps = 9/169 (5%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++R                  + +   +D + + ++I DTAGQE
Sbjct: 29  VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAGQE 87
Query: 76  RFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKVLVGNKADM 132
              TI    + R   G +LVYD+TD  SF  +   ++NI  E     NV  +LVGNKAD+
Sbjct: 88  D--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADL 144
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQR 180
           D S R V T +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 145 DHS-RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAGQE    +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTA QE +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKXDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 47  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 107 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 164
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 165 VREIRQH 171

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 134
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 135 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 59  LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HA 117
           +D +  +L I DTAGQE F  +   Y R   G LLV+ VTD  SF  I  + R I +   
Sbjct: 48  IDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107
Query: 118 SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
            D    +L+GNKAD+D  +R V   +GQ LA +  + + E SAK  +NV+Q F  + R I
Sbjct: 108 RDEFPMILIGNKADLD-HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166
Query: 178 KQ 179
           ++
Sbjct: 167 RK 168

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 122
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 123 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I  +   I+
Sbjct: 42  KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   SD+V  VLVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE  F+++
Sbjct: 102 RVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159
Query: 174 ARDIKQR 180
            R+I+Q 
Sbjct: 160 VREIRQH 166

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + + +DG+   L I DTAG E +  +   Y R   G L V+ + +  SF +I ++   I+
Sbjct: 60  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 115 Q-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           +   S++V  VLVGNK D+    R V T + Q LA  YGI F ETSAKT   V+  F+++
Sbjct: 120 RVKDSEDVPMVLVGNKCDL--PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 177
Query: 174 ARDIKQR 180
            R+I++ 
Sbjct: 178 VREIRKH 184

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++ +DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           ++  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ E 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 131
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 132 KV---KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 129
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 130 KV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ E 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 123
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 124 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 131
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 132 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                     +   +   IK  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ E 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKER 124
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 125 KVK---AKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 4/162 (2%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD G GK+  + R                         +   IK  +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+ + 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 125
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct: 126 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 73/120 (60%), Gaps = 4/120 (3%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
           IK  IWDTAGQER+ +I   YYRGA   ++V+D+++ ++ +  + W+  ++   S N   
Sbjct: 93  IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYII 150
Query: 124 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
           +LV NK  +D++K  V   + Q  A +  + F +TSAKT  N++ +F+ +A +I + + +
Sbjct: 151 ILVANK--IDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  +E+DG+R++L +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLI-VNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQED 70
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y  +  +L+ + +    S  N++  WI  +  H    V  +LVG K D+   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 175
                    E ++ V + +GQ++AD+ G   ++E SAKT   V +VF +  R
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    YRGA   LL + +  ++S+ NI + W+  + +H +  +  VLVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDLR 123
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           + K+         ++ T++G+ L    G +++ E S+KT  NV+ VF
Sbjct: 124 DDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+                    +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQD 93
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   +  H    V  ++VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152
Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
            K             V   +GQ +A   G + + E SA+ + NV  VF
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 122
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 69
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 128
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 129 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 175

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG  + L +WDTAGQ
Sbjct: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQ 64
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + WI  + +H +  V  +LVG K D+ 
Sbjct: 65  EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLR 123
Query: 134 ESKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVF 170
           + K+       AVP  T++G+ L    G   + E S+KT  NV+ VF
Sbjct: 124 DDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 126
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 127 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLI-VFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 125
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 126 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 15/177 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLI-VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + V    S  NI   W+  + +H   NV  +LV NK D+  D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEV-KHFCPNVPIILVANKKDLRSD 144
Query: 134 ESKR---------AVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           E  R          V T  G+A+A       + E SAKT   V +VF +  R   Q+
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 170
           + ++R +   K + +  E G           + E SAKT   V +VF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRQD 124
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 170
           + ++R +   K + +  E G           + E SAKT   V +VF
Sbjct: 125 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    I  IE+DGK+++L +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLI-VFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQED 85
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+   
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKDLRQD 144
Query: 133 DESKRAVPTSKGQALADEYG---------IKFFETSAKTNLNVEQVF 170
           + ++R +   K + +  E G           + E SAKT   V +VF
Sbjct: 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+CLL+                       + ++G  + L +WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + WI  + +H +  V  VLVG K D+ 
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLR 125
Query: 134 ESKR-------AVP--TSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQ 179
           + K+       AVP  T +G+ L    G   + E S+K+  NV+ VF +  R + Q
Sbjct: 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQ 181

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLI-VFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQED 65
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +       Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 124
Query: 134 ES---------KRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E          +  V  ++G+ +A+  G   + E SAKT   V +VF
Sbjct: 125 EHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
            IK + +GD  VGK+C+L+                       + +DG+ + L +WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQ 67
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    YRGA   +L + +  ++S+ N+ + W+  + + A  NV  VLVG K D+ 
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLR 126
Query: 134 ESK-------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           + K         + +++G+ L  + G   + E S+KT  NV+ VF
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD   GK+CLL+                    +  IE+DGK+++L +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLI-VNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 68
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM--D 133
           +  +    Y     IL+ + +    S  NI   W   + +H   NV  +LVGNK D+  D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKDLRND 127
Query: 134 ESKR---------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           E  R          V   +G+ +A+  G   + E SAKT   V +VF
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI---RNWIR 111
           + IE+D     L+I DTAG E+F ++   Y +   G +LVY + ++ SF +I   R+ I 
Sbjct: 42  KEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQII 101
Query: 112 NIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF 171
            ++++  + V  +LVGNK D++  +    +S+G+ALA+E+G  F ETSAK+   V+++F 
Sbjct: 102 RVKRY--EKVPVILVGNKVDLESEREVS-SSEGRALAEEWGCPFMETSAKSKTMVDELFA 158
Query: 172 SIARDI 177
            I R +
Sbjct: 159 EIVRQM 164

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 171
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 56  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 171
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 116 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 175 DLVRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 54  IRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI 113
           ++  E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I
Sbjct: 51  LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 110
Query: 114 EQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFF 171
            +    ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F 
Sbjct: 111 LRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 169
Query: 172 SIARDIKQR 180
            + R I+Q+
Sbjct: 170 DLVRVIRQQ 178

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Query: 58  ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-H 116
           E+D +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +  
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 117 ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIAR 175
             ++   +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R
Sbjct: 120 DRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
Query: 176 DIKQR 180
            I+Q+
Sbjct: 179 VIRQQ 183

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 140
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 131
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 128
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 125
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 7/201 (3%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELD-GKRIKLQIWDTAGQE 75
           K+ LIGD GVGK+  + R                     T   D G  IK  +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           +   +   YY GA G +L +DVT   +  N+  W++  +    +    V+  NK D+   
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132
Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR---LADTDSRSEPST 192
           ++       + L  +   ++FE SAKT  N    F  +AR    R   +  ++   EP+ 
Sbjct: 133 QKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191
Query: 193 IK--INQPDQAGGVGQAAQKS 211
           +    + P+++  +    Q S
Sbjct: 192 VNYDYHSPEESKYIDYMEQAS 212

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI- 113
           + + L      L + DTAGQ+ +  +  ++  G  G +LVY VT   SF  I +  + + 
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122
Query: 114 EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           E H    V  VLVGNKAD+   +R V   +G+ LA+ +G  F E+SA+ N   + +F  +
Sbjct: 123 EGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 174 ARDI 177
            ++I
Sbjct: 182 IQEI 185

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 5/166 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGK-RIKLQIWDTAGQ 74
           +K++++GD   GK+ L                      +R I L G   + LQIWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKAD 131
                +   Y  GA G+LLVYD+T+  SF N+ +W   ++ + + +       LVGNK D
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           + E  R +   K      E G      SAKT  +V   F  +A +I
Sbjct: 127 L-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 121
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   +   +LVG K D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-HTPILLVGTKLDLRD 122
Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                    D+    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 124
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+ +
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 148
Query: 135 ---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           LIK +++GD  VGK+CLL+                       + +DGK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 213
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMD 133
           E +  +    Y      L+ + +   +SF+++R  W   +  H   N   +LVG K D+ 
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLR 272
Query: 134 E---------SKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVF 170
           +          K+  P +  +G A+A E G +K+ E SA T   ++ VF
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           + + K+LL+G  GVGKS L                       R+I +DG+   L ++D  
Sbjct: 5   ESVYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
            Q+  R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  +LVGNK
Sbjct: 63  EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+  S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 121 SDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           + + K+LL+G  GVGKS L                       R+I +DG+   L ++D  
Sbjct: 5   ESVYKVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
            Q+  R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  +LVGNK
Sbjct: 63  EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+  S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 121 SDLVRS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 170

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++                       + +DG+ ++LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQD 79
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDE 134
            F  +    Y      LL + V   SSF N+   W+  I  H       +LVG ++D+ E
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLRE 138
Query: 135 -----------SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVF 170
                       ++ VP    + LA+E     + E SA T  N+++VF
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 8/167 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L                       R+I +DG+   L ++D   Q+ 
Sbjct: 4   KVLLLGAPGVGKSALA--RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
            R +           ++VY VTD+ SF   + +R  +R   Q  +D+V  +LVGNK+D+ 
Sbjct: 62  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSDLV 119
Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            S R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 120 RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           ++K +++GD  VGK+CLL+                    + ++ + GK+  L ++DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQ 76
Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADM- 132
           E +  +    Y      L+ + V + +SF N++  W+  ++++A  NV  +L+G + D+ 
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLR 135
Query: 133 ----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                     D  ++ +   +GQ LA E G   + E SA T   ++ VF
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQE 64
Query: 76  RFRTITTAYYRGAMG-------------------ILLVYDVTDESSFNNIR-NWIRNIEQ 115
            +  +    Y   +G                    L+ + +   +SF N+R  W   +  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 116 HASDNVNKVLVGNKADMDE---------SKRAVPTS--KGQALADEYG-IKFFETSAKTN 163
           H   N   +LVG K D+ +          K+  P +  +G A+A E G +K+ E SA T 
Sbjct: 125 HCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 164 LNVEQVF 170
             ++ VF
Sbjct: 184 RGLKTVF 190

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ +
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 121
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 68
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ +
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 127
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                       + +D K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    Y      L+ + +   +S+ N+R  W   +  H   +   +LVG K D+ +
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP-STPIILVGTKLDLRD 128
Query: 135 ---------SKRAVPTS--KGQALADEY-GIKFFETSAKTNLNVEQVF 170
                     K+  P +  +G ALA E   +K+ E SA T   ++ VF
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           ++ + G  GVGKS L+LR                  + + I  D     LQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGNKADMDE 134
           F  +           +LVY +T   S   ++     I +   D  ++  +LVGNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123
Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           S R V +S+ +ALA  +   F ETSAK N NV+++F
Sbjct: 124 S-REVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  +LVGNK
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 124 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 39  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  +LVGNK
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 154
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 155 SDLVRC-REVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 82
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    VLVG K D+  
Sbjct: 83  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 141
Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           +    V   +G  L  + G + + E S+   + + +VF
Sbjct: 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 55  RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
           + I  D     LQI DT G  +F  +           +LV+ VT + S   +    + I 
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 115 Q--HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           Q   + +++  +LVGNK D  E++R V T + QA+A E+   F ETSAK N NV+++F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K++++GD  VGK+CLLL                       ++   +   L +WDTAGQE
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQE 81
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-D 133
            +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    VLVG K D+  
Sbjct: 82  EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTVLVGLKVDLRK 140
Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
           +    V   +G  L  + G + + E S+   + + +VF
Sbjct: 141 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKVLVGNK 129
           G+  +  +     +     L+VY +TD +SF   + +R  +R   Q  ++++  +LVGNK
Sbjct: 68  GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPIILVGNK 123
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVXIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V KV     LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           +   +R +   +G+ALA+ +   F E+SAK N     VF
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 22/176 (12%)
Query: 17  KLLLIGDSGVGKSCLL-LRXXXXXXXXXXXXXXXXXXKIRTIELDGKR---IKLQIWDTA 72
           +++LIG+ GVGKS L  +                     RT+ +DG+    I L +W+  
Sbjct: 8   RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 73  GQERF-----RTITTAYYRGAMGILLVYDVTDESSF---NNIRNWIRNIEQHASDNVNKV 124
           G+  +       +  AY       L+VY +TD +SF   + +R  +R   Q  ++++  +
Sbjct: 68  GENEWLHDHCMQVGDAY-------LIVYSITDRASFEKASELRIQLRRARQ--TEDIPII 118
Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 119 LVGNKSDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V KV     LVGNK D
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 117
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           +   +R +   +G+ALA+ +   F E+SAK N     VF
Sbjct: 118 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 73  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 131
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 63
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 122
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V KV     LVGNK D
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 120
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           +   +R +   +G+ALA+ +   F E+SAK N     VF
Sbjct: 121 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 65
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 124
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 64
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 123
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K+ ++G   VGKS L ++                    + I ++G+   LQ+ DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-----LVGNKAD 131
           +      Y     G +LVY VT   SF      I+ I     D V KV     LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSF----EVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           +   +R +   +G+ALA+ +   F E+SAK N     VF
Sbjct: 123 L-HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 69
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 128
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           L +++L+GD GVGK+ L                     + RT+ +DG+   L + DT   
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYE-RTLTVDGEDTTLVVVDTWEA 62
Query: 75  ERFRTITT--AYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNVNKVLVGNK 129
           E+     +  +  +G    ++VY + D  SF +   +R  +R    H +D+V  +LVGNK
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT--HQADHVPIILVGNK 120
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
           AD+    R V   +G+A A  +  KF ETSA    NV ++F
Sbjct: 121 ADLARC-REVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLRDTAGQE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 66
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 125
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+                    + T+ + G+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGLE 62
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + V   SSF N++  W+  I  H       +LVG + D+  
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRD 121
Query: 133 ----------DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF 170
                     ++ K   P +  +   D   +K+ E SA T   ++ VF
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 13/175 (7%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKL---QIW 69
           D + K++L+G+SGVGKS L                       R I +D + + L    IW
Sbjct: 21  DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 70  ---DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVL 125
              D  G  R   + T         L+V+ VTD  SF+ +    +R        ++  +L
Sbjct: 81  EQGDAGGWLRDHCLQTGD-----AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 135
Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VGNK+D+  S R V   +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 136 VGNKSDLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 3/170 (1%)
Query: 13  DCLIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTA 72
           D + K++L+G+SGVGKS L                       R I +D + + L ++D  
Sbjct: 10  DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 73  GQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKA 130
            Q +    +     +     L+V+ VTD  SF+ +    +R        ++  +LVGNK+
Sbjct: 70  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           D+  S R V   +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 130 DLARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 3/168 (1%)
Query: 15  LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQ 74
           + K++L+G+SGVGKS L                       R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 75  -ERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADM 132
            +    +     +     L+V+ VTD  SF+ +    +R        ++  +LVGNK+D+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             S R V   +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 122 ARS-REVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR----TIELDGKRIKLQIWDTA 72
           K+ ++G++ VGKS L+                    ++     TI      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN---VNKVLVGNK 129
           G + ++   + Y+ G    +LV+DV+   SF + + W   ++    D    +  VLV NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNLNVEQVFFSIARDIKQRLAD 183
            D+   +  V     Q  A    + FF+ SA     + +  F SIA    +   D
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 30  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147
Query: 134 -------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 9   KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126
Query: 134 -------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           K++++GDS  GK+  LL                      + E+D +RI+L +WDT+G   
Sbjct: 25  KIVVVGDSQCGKT-ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMD-- 133
           +  +    Y  +  +L+ +D++   + +++ + W   I++    N   +LVG K+D+   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTD 142
Query: 134 -------ESKRAVPTS--KGQALADEYG-IKFFETSAKTNLNVEQVFFSIA 174
                   + R  P S  +G  +A + G   + E SA  + N  +  F +A
Sbjct: 143 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           + L ++G  G GKS L ++                        +D + + L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLD 80
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKVLVGNKADM 132
             R     Y   A   L+VY V    SF++  +++  +  HA +   ++  +L+GNK DM
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQ 179
            +  R V  ++G ALA  +G  FFE SA  +  +V+ VF    R+ ++
Sbjct: 140 AQY-RQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 55
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 56  RIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPE 115
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 116 AMSAAEITEKLGL 128

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   + T++   K I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGF---NVETVQY--KNISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           R R++   YYR   G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 12  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 70
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 129
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 178

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 13  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 71
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 130
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 179

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD   GK+  +L+                      +E + +R++L +WDT+G   
Sbjct: 29  KLVLVGDVQCGKT-AMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPY 87
Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADM--- 132
           +  +    Y  +  +LL +D++   + ++ ++ W   I  +   +   +L+G K D+   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTD 146
Query: 133 --------DESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIAR 175
                    + +  +   +G A+A + G + + E SA T+   E+   SI R
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS---EKSIHSIFR 195

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + ++IWD  GQ RFR++   Y RG   I+ + D  D       RN + N +++     + 
Sbjct: 67  VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIP 126
Query: 123 KVLVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 67  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 126
Query: 123 KVLVGNKADM 132
            +++GNK D+
Sbjct: 127 VLVLGNKRDL 136

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI+  AS +   +LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 131 DM-DESKRAVPTSK 143
           D+ DE +R    SK
Sbjct: 121 DVSDEKQRKACXSK 134

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-IEQHASDNVN 122
           + +++WD  GQ RFR++   Y RG   I+ + D  D+      +N + N +++     + 
Sbjct: 76  VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP 135
Query: 123 KVLVGNKADM 132
            +++GNK D+
Sbjct: 136 VLVLGNKRDL 145

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 17  KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIR--TIELDGKR---IKLQIWDT 71
           KL ++G++G GK+ LL +                   ++   I++  KR   + L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           AG+E F +    +       L VYD++  ++  +  + W+ NI+  AS +   +LVG   
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 131 DM-DESKRAVPTSK 143
           D+ DE +R    SK
Sbjct: 123 DVSDEKQRKACXSK 136

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 120 NVNKVLVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 424 AI-ILIFANKQDLPDAMKP 441

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L +                   ++        I   +WD  GQ+
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC-----NISFTVWDVGGQD 72
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           R R++   YY    G++ V D  D S     R  + R + +    N   ++  NK D+ E
Sbjct: 73  RIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPE 132
Query: 135 SKRAVPTSKGQAL 147
           +  A   ++   L
Sbjct: 133 AMSAAEITEKLGL 145

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDN 120
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  + R I      +
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRD 101
Query: 121 VNKVLVGNKADMDESKRA 138
              ++  NK D+ ++ + 
Sbjct: 102 AIILIFANKQDLPDAXKP 119

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 10/165 (6%)
Query: 16  IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R                  K   I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKK--EIVVDGQSYLLLIRDEGGPP 78
Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKVLVGNKADMDE 134
             +     +      ++ V+ + DE SF  + N+ +R      +  V  VLVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 135 S-KRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           +  R +  S+ + L+ D     ++ET A   LNVE+VF  +A+ +
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 54  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 113
Query: 120 NVNKVLVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 114 AI-ILIFANKQDLPDAMKP 131

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKVLVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 55  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 114
Query: 120 NVNKVLVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 115 AI-ILIFANKQDLPDAMKP 132

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASD 119
           K +K  +WD  GQ++ R +   YY G  G++ V D  D    +  R  +  I  ++   D
Sbjct: 42  KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 101
Query: 120 NVNKVLVGNKADMDESKRA 138
            +  ++  NK D+ ++ + 
Sbjct: 102 AI-ILIFANKQDLPDAMKP 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-122
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-122
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-121
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-120
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-120
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-120
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-120
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-120
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-119
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-119
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	1e-119
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-118
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-118
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-118
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-118
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-118
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-117
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-117
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-116
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-116
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-115
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-114
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-114
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-114
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-114
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-113
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-113
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-113
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-113
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-113
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-110
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-109
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-109
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-108
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-108
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-107
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-107
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-107
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-106
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-106
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-103
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-101
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-98
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	6e-98
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	6e-96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-95
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-94
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-90
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-90
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-90
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-90
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-89
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-86
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-86
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	8e-85
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-81
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-81
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-80
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-80
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-74
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	9e-65
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	3e-62
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-56
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-55
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	7e-54
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-52
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	9e-51
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-49
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	9e-49
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-48
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	6e-48
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-48
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-47
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-46
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-45
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	8e-30
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	1e-24
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-17
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-17
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-17
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-16
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-16
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-16
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-16
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-15
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	3e-15
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-14
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	9e-13
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-12
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	9e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	3e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-10
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	7e-06
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	4e-05
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	5e-05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	1e-04
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	6e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  343 bits (883), Expect = e-122
 Identities = 102/204 (50%), Positives = 139/204 (68%), Gaps = 1/204 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +YD L KLLLIG+SGVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK 
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKC 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           D+ + KR V     +  AD   + F ETSA  + NVE  F ++AR IK+ ++  +     
Sbjct: 124 DL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182

Query: 191 STIKINQPDQAGGVGQAAQKSACC 214
              +        G         CC
Sbjct: 183 QKKEDKGNVNLKGQSLTNTGGCCC 206

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  343 bits (883), Expect = e-122
 Identities = 93/203 (45%), Positives = 138/203 (67%), Gaps = 1/203 (0%)

Query: 8   ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
               +D + K+L+IG+S VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQ
Sbjct: 1   GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQ 60

Query: 68  IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG 127
           IWDTAG ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVG
Sbjct: 61  IWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG 120

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSR 187
           NK DM E +R V + +G+ LAD  G +FFE SAK N+NV+Q F  +   I ++++++   
Sbjct: 121 NKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDT 179

Query: 188 SEPSTIKINQPDQAGGVGQAAQK 210
           ++P+     Q  Q         +
Sbjct: 180 ADPAVTGAKQGPQLTDQQAPPHQ 202

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  339 bits (872), Expect = e-121
 Identities = 115/196 (58%), Positives = 149/196 (76%), Gaps = 3/196 (1%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
                +    +YD L KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELD
Sbjct: 2   PLGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 61

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+N
Sbjct: 62  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 121

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R
Sbjct: 122 VNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180

Query: 181 LAD--TDSRSEPSTIK 194
           +    T   +E S +K
Sbjct: 181 MGPGATAGGAEKSNVK 196

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  338 bits (870), Expect = e-120
 Identities = 83/187 (44%), Positives = 122/187 (65%), Gaps = 1/187 (0%)

Query: 5   PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
           P  +  DYD L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++
Sbjct: 16  PRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKV 75

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
           KLQIWDTAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  V
Sbjct: 76  KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 135

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           LVGNK D+   +R V   + +  ++   + + ETSAK + NVE++F  +A  +       
Sbjct: 136 LVGNKIDL-AERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 185 DSRSEPS 191
              +  S
Sbjct: 195 TLVNNVS 201

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  338 bits (868), Expect = e-120
 Identities = 91/179 (50%), Positives = 127/179 (70%), Gaps = 1/179 (0%)

Query: 5   PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
                   D + KLLLIG+S VGK+  L R++D SFT +F++T+GIDFK++T+    KRI
Sbjct: 12  SGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRI 71

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
           KLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   +
Sbjct: 72  KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI 131

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
           LVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV+QVF  +   I +++ +
Sbjct: 132 LVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  337 bits (867), Expect = e-120
 Identities = 122/180 (67%), Positives = 148/180 (82%), Gaps = 1/180 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YD L KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWD
Sbjct: 4   TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK 
Sbjct: 64  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
           D+   KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++      +  
Sbjct: 124 DV-NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATAA 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  337 bits (866), Expect = e-120
 Identities = 92/178 (51%), Positives = 132/178 (74%), Gaps = 1/178 (0%)

Query: 7   RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
             + ++D + KLL+IG+S VGK+  L R++D +FT +F++T+GIDFK++T+    KR+KL
Sbjct: 15  YFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKL 74

Query: 67  QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126
           QIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV
Sbjct: 75  QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILV 134

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           GNK DM E +R VPT KGQ LA++ G  FFE SAK N++V Q F  +   I  +++D+
Sbjct: 135 GNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 191

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  338 bits (868), Expect = e-120
 Identities = 106/211 (50%), Positives = 151/211 (71%), Gaps = 3/211 (1%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
             +  +     YD ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++
Sbjct: 6   TVSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN 65

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D 
Sbjct: 66  GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE 125

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
              +LVGNK+DM+   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I+++
Sbjct: 126 AQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183

Query: 181 LADTDSRSEPSTIKINQPDQAGGVGQAAQKS 211
           +         +  + N    +G  G +++ +
Sbjct: 184 IDSNKLVGVGNGKEGNISINSGS-GNSSKSN 213

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  336 bits (864), Expect = e-119
 Identities = 112/182 (61%), Positives = 144/182 (79%), Gaps = 1/182 (0%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
              P +    +YD L KLLLIGDSGVGKSCLLLRF+D ++T S+I+TIG+DFKIRTIELD
Sbjct: 19  QGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 78

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+N
Sbjct: 79  GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN 138

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           VNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVEQ F ++A +IK+R
Sbjct: 139 VNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197

Query: 181 LA 182
           + 
Sbjct: 198 MG 199

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  335 bits (862), Expect = e-119
 Identities = 81/185 (43%), Positives = 115/185 (62%), Gaps = 6/185 (3%)

Query: 2   AAPPARARA-DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
             P   A++       K++L GD+ VGKS  L+R     F  +   T+G+DF+++T+ +D
Sbjct: 14  LVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD 73

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           G+R  LQ+WDTAGQERFR+I  +Y+R A G+LL+YDVT E SF NIR W+  IE  A + 
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133

Query: 121 VNKVLVGNKADMD-----ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
           V  +LVGNKAD+      E ++ VP   G+ LA  YG  F ETSAK   N+ +    +AR
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193

Query: 176 DIKQR 180
           ++K+R
Sbjct: 194 EVKKR 198

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  334 bits (860), Expect = e-119
 Identities = 96/179 (53%), Positives = 131/179 (73%), Gaps = 2/179 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD L KLL+IGDSGVGKS LLLRF+D +F+ S+ITTIG+DFKIRT+E++G+++KLQIWD
Sbjct: 5   DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWD 64

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V ++LVGNK 
Sbjct: 65  TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKN 123

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           D    ++ V T      A + GI+ FETSAK N+NVE++F  I   + +   D  ++ +
Sbjct: 124 DD-PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  334 bits (858), Expect = e-118
 Identities = 89/175 (50%), Positives = 130/175 (74%), Gaps = 2/175 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 6   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 65

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 125

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
            D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+R    
Sbjct: 126 VDS-AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  334 bits (858), Expect = e-118
 Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 1/177 (0%)

Query: 6   ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
            R   DY+ + K++LIG+SGVGK+ LL RF+   F+    TTIG++F  RT+ L    +K
Sbjct: 16  PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 75

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVL 125
            QIWDTAG ER+R IT+AYYRGA+G LLV+D+T   ++  +  W++ +  HA   +  +L
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA 182
           VGNK+D+    R VPT + +  A+  G+ F ETSA  + NVE  F ++ ++I  +++
Sbjct: 136 VGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVS 191

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  334 bits (858), Expect = e-118
 Identities = 78/178 (43%), Positives = 127/178 (71%), Gaps = 2/178 (1%)

Query: 5   PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI 64
           P  +    D  +++++IG  GVGK+ L+ RF+D +F  +  +T+G+DFKI+T+EL GK+I
Sbjct: 16  PRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKI 75

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
           +LQIWDTAGQERF +IT+AYYR A GI+LVYD+T + +F+++  W++ I+++AS++   +
Sbjct: 76  RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL 135

Query: 125 LVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           LVGNK D  E+ R +   +G+  A +  G++F E SAK N NV+++F  +  DI +++
Sbjct: 136 LVGNKLDC-ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  333 bits (855), Expect = e-118
 Identities = 87/171 (50%), Positives = 124/171 (72%), Gaps = 1/171 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
               L K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWD
Sbjct: 17  RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWD 76

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+
Sbjct: 77  TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           D+ ES+R V   +G+A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 137 DL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  332 bits (854), Expect = e-118
 Identities = 82/195 (42%), Positives = 119/195 (61%), Gaps = 3/195 (1%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           ++  +    D    +K+L+IG+SGVGKS LLLRF+D +F      TIG+DFK++TI +DG
Sbjct: 2   SSGSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDG 61

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN- 120
            + KL IWDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N 
Sbjct: 62  NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +  +LVGNK D +   R V  ++G   A ++ + F E SAKT   V+  F  +   I Q 
Sbjct: 122 IVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 179

Query: 181 LADTDSRSEPSTIKI 195
               +S ++ S    
Sbjct: 180 PGLWESENQNSGPSS 194

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  331 bits (852), Expect = e-117
 Identities = 82/181 (45%), Positives = 123/181 (67%), Gaps = 2/181 (1%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           +          YD L KL+L+GD+ VGK+C++ RF  G+F+    +TIG+DF ++T+E+ 
Sbjct: 15  VPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ 74

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKR+KLQIWDTAGQERFRTIT +YYR A G +L YD+T  SSF ++ +WI ++ ++A  N
Sbjct: 75  GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIK-FFETSAKTNLNVEQVFFSIARDIKQ 179
           + ++L+GNK+D+    R V  ++ Q+LA+ Y I    ETSAK + NVE+ F  +A ++  
Sbjct: 135 IVQLLIGNKSDL-SELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

Query: 180 R 180
           R
Sbjct: 194 R 194

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  329 bits (847), Expect = e-117
 Identities = 87/194 (44%), Positives = 129/194 (66%), Gaps = 12/194 (6%)

Query: 6   ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD----- 60
           + +  DYD LIK L +GDSGVGK+ +L +++DG F + FITT+GIDF+ + +        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 61  -----GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ 115
                G+RI LQ+WDTAG ERFR++TTA++R AMG LL++D+T+E SF N+RNWI  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

Query: 116 HA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           HA S+N + VL GNK+D+ E +RAV   + + LA++YGI +FETSA    N+      + 
Sbjct: 122 HAYSENPDIVLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180

Query: 175 RDIKQRLADTDSRS 188
             I +R+  +  +S
Sbjct: 181 DLIMKRMERSVDKS 194

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  327 bits (841), Expect = e-116
 Identities = 102/171 (59%), Positives = 138/171 (80%), Gaps = 2/171 (1%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM 132
           GQERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
           +   R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++  
Sbjct: 121 E--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  327 bits (841), Expect = e-116
 Identities = 76/181 (41%), Positives = 111/181 (61%), Gaps = 6/181 (3%)

Query: 4   PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
                R     + K+++IGDS VGK+CL  RF  G F      TIG+DF+ R +++DG+R
Sbjct: 9   GSLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER 68

Query: 64  IKLQIWDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN-V 121
           IK+Q+WDTAGQERFR ++   YYR    ++ VYD+T+ +SF+++  WI   +QH   N +
Sbjct: 69  IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128

Query: 122 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQVFFSIARDIK 178
            ++LVGNK D+  S   VPT   Q  AD + +  FETSAK    N +VE +F ++A  +K
Sbjct: 129 PRILVGNKCDL-RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

Query: 179 Q 179
            
Sbjct: 188 S 188

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  325 bits (836), Expect = e-115
 Identities = 78/188 (41%), Positives = 109/188 (57%), Gaps = 1/188 (0%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +    R     D L K L+IG +G GKSCLL +F +  F      TIG++F  R + + G
Sbjct: 12  SGLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGG 71

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           K +KLQIWDTAGQERFR++T +YYRGA G LLVYD+T   ++N++  W+ +    AS N+
Sbjct: 72  KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI 131

Query: 122 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
             +L GNK D+ + +R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 132 VVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

Query: 182 ADTDSRSE 189
              +   E
Sbjct: 191 DSGELDPE 198

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  323 bits (829), Expect = e-114
 Identities = 84/176 (47%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
                    +YD L K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DG
Sbjct: 16  GRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDG 75

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           K IK QIWDTAG ER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+
Sbjct: 76  KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 135

Query: 122 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
             +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct: 136 VIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  323 bits (830), Expect = e-114
 Identities = 85/198 (42%), Positives = 128/198 (64%), Gaps = 12/198 (6%)

Query: 5   PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-- 62
             R   DYD LIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +  + +  
Sbjct: 15  VPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGP 74

Query: 63  --------RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE 114
                   ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++
Sbjct: 75  NGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 134

Query: 115 QHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
            +A  +N + VL+GNKAD+   +R V   + + LAD+YGI +FETSA T  NVE+   ++
Sbjct: 135 ANAYCENPDIVLIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193

Query: 174 ARDIKQRLADTDSRSEPS 191
              I +R+     +++  
Sbjct: 194 LDLIMKRMEQCVEKTQIP 211

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  323 bits (831), Expect = e-114
 Identities = 93/226 (41%), Positives = 133/226 (58%), Gaps = 15/226 (6%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           M++       DYD L K++LIGDSGVGKS LL RF+   F     +TIG++F  RT+E++
Sbjct: 1   MSSE--DYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GKRIK QIWDTAGQER+R IT+AYYRGA+G L+VYD++  SS+ N  +W+  + ++A DN
Sbjct: 59  GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           V   L+GNK+D+    RAVPT + +  A E  + F ETSA  + NV++ F  +   I Q+
Sbjct: 119 VAVGLIGNKSDL-AHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177

Query: 181 LADTDSRSEPSTIKINQPDQAGGVG------------QAAQKSACC 214
           ++        S+   N    +   G            + A  + CC
Sbjct: 178 VSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  322 bits (828), Expect = e-114
 Identities = 72/214 (33%), Positives = 114/214 (53%), Gaps = 7/214 (3%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
                    +     KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ 
Sbjct: 3   GMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 62

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           + ++LQ+WDTAG ERFR++  +Y R +   ++VYD+T+ +SF     WI ++      +V
Sbjct: 63  RTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDV 122

Query: 122 NKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
             +LVGNK D+   KR V   +G+  A E  + F ETSAK   NV+Q+F  +A  +    
Sbjct: 123 IIMLVGNKTDL-ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 182 ADTD-SRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           +  D SR +   IK+ +P +     Q   +  C 
Sbjct: 182 STQDRSREDMIDIKLEKPQE-----QPVSEGGCL 210

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  321 bits (824), Expect = e-113
 Identities = 81/174 (46%), Positives = 115/174 (66%), Gaps = 1/174 (0%)

Query: 6   ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
           A A  +Y  + K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++IK
Sbjct: 6   ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 65

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVL 125
           LQIWDTAGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   +L
Sbjct: 66  LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 125

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           +GNKAD+ E++R V   + +  A+E G+ F E SAKT  NVE  F   A+ I Q
Sbjct: 126 IGNKADL-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  320 bits (823), Expect = e-113
 Identities = 79/179 (44%), Positives = 109/179 (60%), Gaps = 1/179 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
            YD L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWD
Sbjct: 6   TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK 
Sbjct: 66  TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE 189
           D+ ++ R V   +    A E  + F ETSA T  NVE+ F   AR I  ++   +   E
Sbjct: 126 DL-DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPE 183

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  319 bits (820), Expect = e-113
 Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 1/170 (0%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
                  K++L+G+  VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IW
Sbjct: 1   GSRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
           DTAGQERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            D+ E +R V   + ++ A+  G K + TSAK N  +E++F  + + + +
Sbjct: 121 IDL-EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  320 bits (822), Expect = e-113
 Identities = 88/198 (44%), Positives = 125/198 (63%), Gaps = 9/198 (4%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD L K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL--------AD 183
           +    RAVPT + +A A++  + F ETSA  + NVE+ F +I  +I + +        A 
Sbjct: 122 L-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 180

Query: 184 TDSRSEPSTIKINQPDQA 201
            D     + + I+ P   
Sbjct: 181 HDESPGNNVVDISVPPTT 198

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  318 bits (818), Expect = e-113
 Identities = 61/169 (36%), Positives = 96/169 (56%), Gaps = 2/169 (1%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
            +  IK++++G+  VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDT
Sbjct: 2   SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQE F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D
Sbjct: 62  AGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKID 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +      +   + + LA    ++F+ TS K +LNV +VF  +A    Q+
Sbjct: 121 L-LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  311 bits (799), Expect = e-110
 Identities = 69/179 (38%), Positives = 105/179 (58%), Gaps = 6/179 (3%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAA       +     KL+L+GD G GKS L+LRF    F     +TIG  F  +T+ ++
Sbjct: 3   MAAAG-----NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN 57

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
              +K +IWDTAGQER+ ++   YYRGA   ++V+DVT+++SF   + W++ ++   + N
Sbjct: 58  DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN 117

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           +   L GNK+D+    R V     Q  A E G+ F ETSAKT  NV+++F+ IAR + +
Sbjct: 118 MVMALAGNKSDL-LDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  312 bits (801), Expect = e-109
 Identities = 70/209 (33%), Positives = 121/209 (57%), Gaps = 11/209 (5%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
               L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWD
Sbjct: 4   RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLV 126
           TAGQERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 186
           GNK D+ E+++            +  I +FETSAK  +NVEQ F +IAR+  ++  + + 
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182

Query: 187 RSE-PSTIKINQPDQAGGVGQAAQKSACC 214
            +E P  IK+++ ++A          +C 
Sbjct: 183 YNEFPEPIKLDKNERAKA-----SAESCS 206

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  310 bits (797), Expect = e-109
 Identities = 62/178 (34%), Positives = 98/178 (55%), Gaps = 1/178 (0%)

Query: 3   APPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
           +     R      +K+ L+GD+GVGKS ++ RF    F  +   TIG  F  +T+    +
Sbjct: 11  SSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNE 70

Query: 63  RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
             K  IWDTAGQERF ++   YYRG+   ++VYD+T + SF  ++ W++ +++H  +N+ 
Sbjct: 71  LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV 130

Query: 123 KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             + GNK D+    R VP    +  A+  G    ETSAK  +N+E++F  I+R I   
Sbjct: 131 MAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  306 bits (787), Expect = e-108
 Identities = 66/167 (39%), Positives = 103/167 (61%), Gaps = 1/167 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +     KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + ++LQ+WD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR++  +Y R +   ++VYD+T+ +SF+    WI ++      +V  +LVGNK 
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D+   KR V T +G+  A E  + F ETSAK   NV+Q+F  +A  +
Sbjct: 130 DL-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  308 bits (790), Expect = e-108
 Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 5/210 (2%)

Query: 7   RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIG-IDFKIRTIELDGKRIK 65
            +    +   K+ LIGD GVGK+  + R  DG F  ++  T+G ++  +  ++  G  IK
Sbjct: 3   GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVL 125
             +WDTAGQE+   +   YY GA G +L +DVT   +  N+  W++  +    +    V+
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA--- 182
             NK D+ ++++ +       +      ++FE SAKT  N    F  +AR    R     
Sbjct: 123 CANKIDI-KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIF 181

Query: 183 DTDSRSEPSTIKINQPDQAGGVGQAAQKSA 212
            ++   EP+ +  +             + A
Sbjct: 182 VSNVNLEPTEVNYDYHSPEESKYIDYMEQA 211

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  305 bits (783), Expect = e-107
 Identities = 63/166 (37%), Positives = 96/166 (57%), Gaps = 1/166 (0%)

Query: 14  CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
             +K+ L+GD+GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG
Sbjct: 5   RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 64

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
            ERFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ 
Sbjct: 65  LERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL- 123

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
              R V     +  AD     F ETSAK  +N+ ++F  I+R I  
Sbjct: 124 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  304 bits (781), Expect = e-107
 Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 7/176 (3%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIW
Sbjct: 2   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVL 125
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A     ++   V+
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 121

Query: 126 VGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +GNK D+ E  R V T + QA   + G   +FETSAK   NV   F    R +   
Sbjct: 122 LGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  304 bits (781), Expect = e-107
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 5/172 (2%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQI 68
             +   +K++++GD   GK+ L   F+  +F   +  TIG+DF +R I L G   + LQI
Sbjct: 1   GSHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNKVL 125
           WD  GQ     +   Y  GA G+LLVYD+T+  SF N+ +W   +++    +       L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           VGNK D+ E  R +   K      E G      SAKT  +V   F  +A +I
Sbjct: 121 VGNKIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  302 bits (777), Expect = e-106
 Identities = 75/170 (44%), Positives = 113/170 (66%), Gaps = 1/170 (0%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +  C  KL+L+G+S VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IW
Sbjct: 1   GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
           DTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           AD+  +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 121 ADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  302 bits (776), Expect = e-106
 Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 6/176 (3%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR-IKLQIW 69
               ++K++++GDSGVGK+ L+ R+ +  ++  +  TIG DF  + + +DG +   +Q+W
Sbjct: 4   RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVW 63

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVL 125
           DTAGQERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA+    +    V+
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 126 VGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +GNK D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  295 bits (757), Expect = e-103
 Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 8/181 (4%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSD--GSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
                 K+ ++G++ VGKS L+  F+     F   +  T G++  +  + +    + +++
Sbjct: 16  TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVEL 75

Query: 69  W--DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ---HASDNVNK 123
           +  DTAG + ++   + Y+ G    +LV+DV+   SF + + W   ++         +  
Sbjct: 76  FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA 135

Query: 124 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQVFFSIARDIKQRLA 182
           VLV NK D+   +  V     Q  A    + FF+ SA     + +  F SIA    +   
Sbjct: 136 VLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYE 195

Query: 183 D 183
           D
Sbjct: 196 D 196

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  291 bits (748), Expect = e-101
 Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 10/204 (4%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA+    A+ +     KL+L+GD G GK+  + R   G F   ++ T+G++        +
Sbjct: 4   MASA---AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
              IK  +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N
Sbjct: 61  RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EN 119

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +  VL GNK D+ + K     +K      +  +++++ SAK+N N E+ F  +AR +   
Sbjct: 120 IPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 176

Query: 181 LA---DTDSRSEPSTIKINQPDQA 201
                       P  + ++    A
Sbjct: 177 PNLEFVAMPALAPPEVVMDPALAA 200

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  282 bits (724), Expect = 4e-98
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 9   RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           +   D + K++L+G+SGVGKS L   F      ++       D   R I +D + + L +
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76

Query: 69  WDTAGQERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLV 126
           +D   Q      +     +     L+V+ VTD  SF+ +   +  +       ++  +LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           GNK+D+    R V   +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 137 GNKSDL-ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  282 bits (724), Expect = 6e-98
 Identities = 65/215 (30%), Positives = 111/215 (51%), Gaps = 12/215 (5%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MAA   + + +   L K++++G  GVGKS L L+F    F   +  T    ++ + + LD
Sbjct: 1   MAANKPKGQ-NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLD 58

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASD 119
           G+ +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +
Sbjct: 59  GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE 118

Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           NV  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ 
Sbjct: 119 NVPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177

Query: 180 RLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 214
           R  +          + +   +         +  CC
Sbjct: 178 RKMEDSKEKNGKKKRKSLAKR--------IRERCC 204

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  276 bits (709), Expect = 6e-96
 Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 3/180 (1%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
            +       +   L K++++G  GVGKS L L+F    F   +  T    ++ + + LDG
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDN 120
           + +++ I DTAGQE +  I   Y+R   G L V+ +T+  SF    ++   I +    +N
Sbjct: 64  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 123

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           V  +LVGNK+D+ E KR V   + +  A+++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 124 VPFLLVGNKSDL-EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  274 bits (702), Expect = 3e-95
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 3/168 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K++L+G+SGVGKS L   F       +       D   R I +D + + L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 75  ERFR-TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADM 132
                 +     +     L+V+ VTD  SF+ +   +  +       ++  +LVGNK+D+
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
               R V   +G+ LA     K  ETSA  + N  ++F    R I+ R
Sbjct: 122 -ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  272 bits (698), Expect = 2e-94
 Identities = 62/171 (36%), Positives = 89/171 (52%), Gaps = 3/171 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
                 KL+++G  GVGKS L ++F    F + +  TI  D   +   +DG   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNK 129
           TAGQE F  +   Y R   G LLV+ + D  SFN +      I      D+   VLVGNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           AD+ ES+R VP S+  A    + + +FE SAK  LNV++ F  + R +++ 
Sbjct: 124 ADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  269 bits (689), Expect = 5e-93
 Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 4/181 (2%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +   +   ++     KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D 
Sbjct: 5   SMATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDN 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDN 120
           +   L + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I +    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQ 179
              +LV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q
Sbjct: 124 FPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182

Query: 180 R 180
           +
Sbjct: 183 Q 183

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  267 bits (686), Expect = 9e-93
 Identities = 61/167 (36%), Positives = 98/167 (58%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F    F   +  T    ++ + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I +    +NV  +LVGNK+D+ 
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL- 121

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           E KR V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  265 bits (680), Expect = 1e-91
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 3/166 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K+ ++G   VGKS L ++F +G F  S+  TI   F  + I ++G+   LQ+ DTAGQ+
Sbjct: 7   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQD 65

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDE 134
            +      Y     G +LVY VT   SF  I+     + +      +  +LVGNK D+  
Sbjct: 66  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-H 124

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            +R +   +G+ALA+ +   F E+SAK N     VF  I  + ++ 
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  266 bits (681), Expect = 1e-91
 Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 14/207 (6%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
            +     ++++ G  GVGKS L+LRF  G+F  ++I TI   ++ + I  D     LQI 
Sbjct: 3   PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQIT 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ--HASDNVNKVLVG 127
           DT G  +F  +           +LV+ VT + S   +    + I Q   + +++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSR 187
           NK D  +  R V T + QA+A E+   F ETSAK N NV+++F  +     +R    +  
Sbjct: 122 NKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNID 179

Query: 188 SEPSTIKINQPDQAGGVGQAAQKSACC 214
            + S  +               K  C 
Sbjct: 180 GKRSGKQKRTDR---------VKGKCT 197

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  263 bits (674), Expect = 6e-91
 Identities = 63/163 (38%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E+
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES 135
           F ++   Y +   G +LVY + ++ SF +I+     I      + V  +LVGNK D+ ES
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL-ES 122

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
           +R V +S+G+ALA+E+G  F ETSAK+   V+++F  I R + 
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  264 bits (677), Expect = 7e-91
 Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K++++G   VGK+ L  +F +G F+  +  T+   +  + + L      L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES 135
           +  +  ++  G  G +LVY VT   SF  I +  + + E H    V  VLVGNKAD+   
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-SP 143

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V   +G+ LA+ +G  F E+SA+ N   + +F  + ++I + 
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  262 bits (671), Expect = 2e-90
 Identities = 61/164 (37%), Positives = 92/164 (56%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F      TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK+D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA- 122

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            R V + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  262 bits (673), Expect = 2e-90
 Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 23  KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 81

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  VLVGNK D+   
Sbjct: 82  YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT- 140

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V T +   LA  YGI F ETSAKT   VE  F+++ R+I+Q 
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  260 bits (668), Expect = 6e-90
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 4/166 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++ + G  GVGKS L+LRF  G+F  S+I T+   ++ + I  D     LQI DT G  +
Sbjct: 5   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE 134
           F  +           +LVY +T   S   ++     I +     +++  +LVGNK D   
Sbjct: 64  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE-S 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             R V +S+ +ALA  +   F ETSAK N NV+++F  +    K+R
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  262 bits (670), Expect = 8e-90
 Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 41/210 (19%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK----- 65
           +     K +L+G+S VGKS ++LR +  +F  +  TTIG  F    + L+   IK     
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 66  --------------------------------LQIWDTAGQERFRTITTAYYRGAMGILL 93
                                             IWDTAGQER+ +I   YYRGA   ++
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 94  VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI 153
           V+D+++ ++ +  + W+  +    S N   +LV NK D +  K  V   + Q  A +  +
Sbjct: 123 VFDISNSNTLDRAKTWVNQL--KISSNYIIILVANKIDKN--KFQVDILEVQKYAQDNNL 178

Query: 154 KFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
            F +TSAKT  N++ +F+ +A +I + + +
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  260 bits (666), Expect = 1e-89
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+LL+G  GVGKS L   F  G          G  +  R+I +DG+   L ++D   Q
Sbjct: 2   VYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQ 59

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMD 133
           +  R +           ++VY VTD+ SF         + +   +D+V  +LVGNK+D+ 
Sbjct: 60  DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL- 118

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
              R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  260 bits (666), Expect = 2e-89
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 4/179 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI   ++ + + +DG+   L I DTAGQE 
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  VLVGNK D+   
Sbjct: 65  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS- 123

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIK 194
            R V T + Q LA  YGI F ETSAKT   V+  F+++ R+I++         +    K
Sbjct: 124 -RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKK 181

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  257 bits (658), Expect = 2e-88
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 14  CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
            L +++L+GD GVGK+ L   F+              D   RT+ +DG+   L + DT  
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG-EDVYERTLTVDGEDTTLVVVDTWE 61

Query: 74  QERFRTITT--AYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKA 130
            E+     +  +  +G    ++VY + D  SF +       +   H +D+V  +LVGNKA
Sbjct: 62  AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADT 184
           D+    R V   +G+A A  +  KF ETSA    NV ++F  + R ++ R  D+
Sbjct: 122 DL-ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  255 bits (654), Expect = 7e-88
 Identities = 58/165 (35%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++F  G F   +  TI   ++ + +E+D ++  L+I DTAG E+
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDES 135
           F  +   Y +   G  LVY +T +S+FN++++    I +   +++V  +LVGNK D+ E 
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-ED 122

Query: 136 KRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           +R V   +GQ LA ++    F E+SAK+ +NV ++F+ + R I +
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  252 bits (645), Expect = 2e-86
 Identities = 71/169 (42%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 14  CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
             IKL+L+G++ VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD-- 131
           QERF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D  
Sbjct: 62  QERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL 121

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            +  +R V   +G+ LA+E G+ FFETSAKT  NV  VF  I   I  +
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  252 bits (645), Expect = 5e-86
 Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 8/185 (4%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIEL 59
           M+     +    +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +
Sbjct: 23  MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV 82

Query: 60  DGKR---IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQ 115
           DG+    I L +W+  G+  +  +     +     L+VY +TD +SF         +   
Sbjct: 83  DGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA 140

Query: 116 HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
             ++++  +LVGNK+D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R
Sbjct: 141 RQTEDIPIILVGNKSDL-VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

Query: 176 DIKQR 180
            ++ R
Sbjct: 200 QVRLR 204

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  248 bits (636), Expect = 8e-85
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 5/171 (2%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
               +KL + G +GVGKS L++RF    F   +  T+   ++     +D + + ++I DT
Sbjct: 25  KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDT 83

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKA 130
           AGQE        + R   G +LVYD+TD  SF  +      +++     NV  +LVGNKA
Sbjct: 84  AGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQR 180
           D+ +  R V T +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 143 DL-DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  240 bits (614), Expect = 1e-81
 Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 14/177 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTT--SFITTIGIDFKIRTIELDGKR---IKLQIWD 70
           +KL+++G++G GK+ LL +      +       T+GID K   I++  KR   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
            AG+E F +    +       L VYD++  ++  + ++ W+ NI+  AS +   +LVG  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVGTH 121

Query: 130 ADMDESK--RAVPTSKGQALADEYGI-----KFFETSAKTNLNVEQVFFSIARDIKQ 179
            D+ + K  +A  +   + L ++ G        F  + + +  + ++  +I  +   
Sbjct: 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  239 bits (612), Expect = 3e-81
 Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 10/168 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ ++G+   GKS L+ R+  G++        G  FK + I +DG+   L I D  G  
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFK-KEIVVDGQSYLLLIRDEGGPP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMD- 133
             +     +      ++ V+ + DE SF  + N+   +     +  V  VLVG +  +  
Sbjct: 79  ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 134 ESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
            + R +  S+ + L+ +     ++ET A   LNVE+VF  +A+ +   
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  236 bits (604), Expect = 6e-80
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 7/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           + L ++G  G GKS L ++F    F + +   +   +      +D + + L++ DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLD 80

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD---NVNKVLVGNKADM 132
             R     Y   A   L+VY V    SF++  +++  +  HA +   ++  +L+GNK DM
Sbjct: 81  TPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFSIARDIKQ 179
               R V  ++G ALA  +G  FFE SA  +  +V+ VF    R+ ++
Sbjct: 140 -AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  236 bits (603), Expect = 7e-80
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKR---IKLQIWD 70
             +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+    I L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNK 129
             G+  +  +     +     L+VY +TD +SF         +     ++++  +LVGNK
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+    R V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 124 SDL-VRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  220 bits (563), Expect = 6e-74
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 12/172 (6%)

Query: 14  CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
             ++L ++GD+  GKS L+ RF  GS+      T    +K + + +DG+   + I + AG
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYK-KEMLVDGQTHLVLIREEAG 63

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW---IRNIEQHASDNVNKVLVGNKA 130
               +     +   A  ++ V+ + DE+SF  +      + ++       +   LVG + 
Sbjct: 64  APDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118

Query: 131 DMD-ESKRAVPTSKGQAL-ADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            +   S R V  ++ +AL AD     ++ET A   LNV++VF  +A+ +   
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  208 bits (530), Expect = 9e-65
 Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 13/187 (6%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL- 59
             A        +   IK+ LIGD   GK+ LL +    +F      T G++   +     
Sbjct: 27  EEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNI 86

Query: 60  -------DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN 112
                  + K      WD  GQE        +   +   +L+ D     + +N   W+R+
Sbjct: 87  KGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRH 143

Query: 113 IEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS 172
           IE++   +   ++V NK D +     +   K          +F   S K    VE +  S
Sbjct: 144 IEKYGGKSP-VIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKS 201

Query: 173 IARDIKQ 179
           +   +  
Sbjct: 202 LKSAVLH 208

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  191 bits (487), Expect = 3e-62
 Identities = 51/173 (29%), Positives = 86/173 (49%), Gaps = 5/173 (2%)

Query: 6   ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
           A    +    +K++++GD  VGK+CLLL FS G   T+++ T+  +F    ++   +   
Sbjct: 14  AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFI 72

Query: 66  LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKV 124
           L +WDTAGQE +  +    Y  +  +LL + V + +SF+NI   W   I +H  D    V
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDTAKTV 131

Query: 125 LVGNKADM-DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
           LVG K D+  +    V   +G  L  + G + + E S+   + + +VF     
Sbjct: 132 LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  176 bits (447), Expect = 6e-56
 Identities = 58/173 (33%), Positives = 93/173 (53%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K++L+GD G GK+ LL+ F+DG+F  S+  T+   + +  +++ GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +   +Y  A  +LL +DVT  +SF+NI N W   +  H    V  ++VG K D+ +
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRK 152

Query: 135 SK-----------RAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
            K             V   +GQ +A   G + + E SA+ + NV  VF   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  174 bits (443), Expect = 1e-55
 Identities = 53/171 (30%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+CLL+ ++  +F T ++ T+  +F    + ++G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQE 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDE 134
            +  +    YRGA   +L + +  ++S+ N+   WI  + +H +  V  VLVG K D+ +
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRD 126

Query: 135 SKRA---------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
            K+          + T +G+ L    G   + E S+K+  NV+ VF +  R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  170 bits (432), Expect = 7e-54
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 15/187 (8%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           +    R         KL+++GD   GK+CLL+ FS   F   ++ T+  +  I  IE+DG
Sbjct: 12  SGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDG 70

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 120
           K+++L +WDTAGQE +  +    Y     IL+ + +    S  NI   W   ++     N
Sbjct: 71  KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N 129

Query: 121 VNKVLVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ 168
           V  +LVGNK D+              +  V + +G+ +A+      + E SAKT   V +
Sbjct: 130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVRE 189

Query: 169 VFFSIAR 175
           VF    R
Sbjct: 190 VFEMATR 196

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  166 bits (423), Expect = 2e-52
 Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+ FS   F   ++ T+  ++ +  IE+DGK+++L +WDTAGQE
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y     IL+ + V    S  NI   W+  ++     NV  +LV NK D+  
Sbjct: 85  DYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRS 143

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
                       +  V T  G+A+A       + E SAKT   V +VF +  R
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  162 bits (412), Expect = 9e-51
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   + +H   N   +LVG K D+  
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLRD 148

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                    ++    +   +G A+A E G +K+ E SA T   ++ VF
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  159 bits (404), Expect = 2e-49
 Identities = 51/171 (29%), Positives = 92/171 (53%), Gaps = 11/171 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK + +GD  VGK+C+L+ ++   F T +I T+  D     + +DG+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    YRGA   +L + +  ++S+ N+   W+  + +  + NV  VLVG K D+  
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPEL-RRFAPNVPIVLVGTKLDLRD 127

Query: 133 -----DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDI 177
                 +    + +++G+ L  + G   + E S+KT  NV+ VF +  + +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  159 bits (403), Expect = 9e-49
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 67/223 (30%)

Query: 22  GDSGVGKSCLLLRF---SDGSFTTSFITTIG-IDFKIRTIELD--------------GKR 63
           G  G+GKSCL  RF   S   F     + +   DF  R +  D                 
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 64  IKLQIW-------DTAGQERFRTITTAYYRGAM--------------------------- 89
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 90  ----------GILLVYDVT--DESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESK 136
                     G LL  DV+     +F++   ++ N+    +      V+V  K D    +
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE-GVE 213

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           R +  +   AL+ +  ++  ETSA++N+NV+  F ++ + I +
Sbjct: 214 RYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLIDK 255

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  156 bits (395), Expect = 2e-48
 Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y      L+ + +   +SF N+R  W   +  H   N   +LVG K D+  
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRD 123

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIAR 175
                    ++    +   +G A+A E G +K+ E SA T   ++ VF    R
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  155 bits (393), Expect = 6e-48
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 16/174 (9%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           + +   K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WD
Sbjct: 24  NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWD 82

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNK 129
           T+G   +  +    Y  +  +L+ +D++   + +++   W   I++    N   +LVG K
Sbjct: 83  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCK 141

Query: 130 ADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEQVF 170
           +D+           +  +  V   +G  +A + G   + E SA  + N V  +F
Sbjct: 142 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  154 bits (391), Expect = 7e-48
 Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+   F  +++ T+  ++   + E+D +RI+L +WDT+G  
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP 66

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y  +  +L+ +D++   + +++   W   I++    N   +LVG K+D+  
Sbjct: 67  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRT 125

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLN-VEQVF 170
                    +  +  V   +G  +A + G   + E SA  + N V  +F
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  153 bits (389), Expect = 2e-47
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 15/168 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K +L+GD  VGK+ L++ ++   + T +I T   D     + +DG+ ++LQ+ DTAGQ+
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQD 79

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            F  +    Y      LL + V   SSF N+   W+  I +        +LVG ++D+  
Sbjct: 80  EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGTQSDLRE 138

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVF 170
                       ++ VP    + LA+E     + E SA T  N+++VF
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  150 bits (381), Expect = 5e-46
 Identities = 36/187 (19%), Positives = 86/187 (45%), Gaps = 16/187 (8%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+L+GD   GK+ +L   +   +  +++ T+  ++    +E + +R++L +WDT+G  
Sbjct: 28  CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSP 86

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADM-- 132
            +  +    Y  +  +LL +D++   + ++    W   I  +   +   +L+G K D+  
Sbjct: 87  YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRT 145

Query: 133 ---------DESKRAVPTSKGQALADEYG-IKFFETSAKTN-LNVEQVFFSIARDIKQRL 181
                     + +  +   +G A+A + G   + E SA T+  ++  +F + +     + 
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205

Query: 182 ADTDSRS 188
           +    +S
Sbjct: 206 SPLPQKS 212

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  148 bits (374), Expect = 3e-45
 Identities = 48/187 (25%), Positives = 94/187 (50%), Gaps = 15/187 (8%)

Query: 2   AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
           A   + A      ++K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + G
Sbjct: 5   AGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGG 63

Query: 62  KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDN 120
           K+  L ++DTAGQE +  +    Y      L+ + V + +SF N++  W+  ++++ + N
Sbjct: 64  KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN 122

Query: 121 VNKVLVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQ 168
           V  +L+G + D+           D  ++ +   +GQ LA E G   + E SA T   ++ 
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182

Query: 169 VFFSIAR 175
           VF     
Sbjct: 183 VFDEAII 189

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  112 bits (280), Expect = 8e-30
 Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 15/183 (8%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           +             LIK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +D
Sbjct: 141 IKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD 199

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD 119
           GK + L +WDTAG E +  +    Y      L+ + +   +SF+++R  W   +  H   
Sbjct: 200 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP- 258

Query: 120 NVNKVLVGNKADM-----------DESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE 167
           N   +LVG K D+           ++    +   +G A+A E G +K+ E SA T   ++
Sbjct: 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

Query: 168 QVF 170
            VF
Sbjct: 319 TVF 321

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 95.2 bits (237), Expect = 1e-24
 Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 20/184 (10%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDG----------SFTTSFITTIGIDFKIRTIE-LDGKRI 64
            K++  G    GK+  L                S  T    T+  DF    I  + G + 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN---IRNWIRNIEQHASDNV 121
           +  ++   GQ  +        RG  GI+ V D        N   +RN   N+ ++     
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 122 NKVLV--GNKADMDESKRAVPTSK-GQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
           +  +V   NK D+     A+P       +  E      E  A     V +    ++R + 
Sbjct: 135 DVPIVIQVNKRDL---PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191

Query: 179 QRLA 182
            R+A
Sbjct: 192 ARVA 195

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+ I TIG  F + T+    K +K Q+WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVETVTY--KNLKFQVWDLGGLT 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +        ++V  NK DM++
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +  +        +A+  G         + F+TSA     +++    +   +K R
Sbjct: 123 AMTS------SEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 75.8 bits (186), Expect = 2e-17
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 22/164 (13%)

Query: 16  IKLLLIGDSGVGKSCLL-LRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
            ++LL+G    GKS +  + F   S   T    +T         I      +  QIWD  
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK--IYKDDISNSSF-VNFQIWDFP 77

Query: 73  GQERFRTIT---TAYYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVG 127
           GQ  F   T      +RG   ++ V D  D+   +   +   +    +   D   +V + 
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI- 136

Query: 128 NKADM------DESKRAVPTSKGQALADE----YGIKFFETSAK 161
           +K D        E++R +       LAD       + F+ TS  
Sbjct: 137 HKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIY 180

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 75.0 bits (185), Expect = 4e-17
 Identities = 42/168 (25%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+   TIG  F + T+    K +KL +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSY--KNLKLNVWDLGGQT 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q        +LV  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 133

Query: 135 SKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +  A   SK   L +  +       +SA     + +    +   IK+ 
Sbjct: 134 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 74.3 bits (183), Expect = 7e-17
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNICFTVWDVGGQD 84

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
           + R +   Y++   G++ V D  D        + ++ + Q        +LV  NK DM  
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM-- 142

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 180
              A+P S+   L D+ G             T A     +      ++ ++ +R
Sbjct: 143 -PNAMPVSE---LTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 13/171 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   + G F    I T+G  F +R I      + +++WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITK--GNVTIKLWDIGGQP 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+          VLV GNK D+  
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 135 SKRAVPTSKGQALADEYGIK-----FFETSAKTNLNVEQVFFSIARDIKQR 180
           +       +   L+    I+      +  S K   N++     + +  K R
Sbjct: 139 ALDEKELIEKMNLSA---IQDREICCYSISCKEKDNIDITLQWLIQHSKSR 186

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+     T    T+G  F I+T+E   +  KL IWD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKTLEH--RGFKLNIWDVGGQK 73

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++          +L+  NK D+  
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133

Query: 135 SKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD 185
           +       +   L     +  +    SA T  ++      +  DI  R+   D
Sbjct: 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRVFTAD 186

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 73.8 bits (182), Expect = 1e-16
 Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           I++L++G    GK+ +L R   G   T+ + T+G    + T++   K I  ++WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLETLQY--KNISFEVWDLGGQT 77

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
             R     Y+     ++ V D TD       ++ +  +        + +L+  NK D+  
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL-- 135

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 180
              A   ++   +A++ G            ++S+KT   + +    +   ++++
Sbjct: 136 -PDAASEAE---IAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 24/177 (13%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKADM 132
             R+    YY     +++V D TD    +  R  +  +  H  +++ K  +    NK D+
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAGLLIFANKQDV 129

Query: 133 DESKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQRL 181
              K  +  ++   ++                   A T   + Q    +   +K RL
Sbjct: 130 ---KECMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRL 180

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 38/174 (21%), Positives = 74/174 (42%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV  NK D+  
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL-- 113

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 180
              A+  ++   + D+ G             T A +   + +    ++  ++ +
Sbjct: 114 -PNAMNAAE---ITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 73.9 bits (181), Expect = 7e-16
 Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 22/179 (12%)

Query: 17  KLLLIGDSGVGKSCLL-LRFSDGSF--TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           KLLL+G SG GKS +  + FS+ S   T     TI ++     +   G  + L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLGN-MTLNLWDCGG 61

Query: 74  QERF-----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLV- 126
           Q+ F            ++    ++ V+DV       +I  + + ++Q    + + K+ V 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 127 GNKADM--DESKRAVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFFSIARDI 177
            +K D+   + +  +     + L++         +  F TS     ++ + +  I   +
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDE-SLYKAWSQIVCSL 179

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 30/171 (17%), Positives = 68/171 (39%), Gaps = 10/171 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + +L +G    GK+ ++ +    +  +  I  TIG  F I   +     +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKAD 131
            R+R +   YY+    I+ V D +D       +  +  +  H      ++ +    NK D
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMD 137

Query: 132 MDESKRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           + ++  +V  S+   L +  +       + A     +++    +   I+  
Sbjct: 138 LRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 69.9 bits (172), Expect = 3e-15
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 20/174 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ LL + +    +     T G  F I++++   +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKSVQS--QGFKLNVWDIGGQR 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDE 134
           + R    +Y+     ++ V D  D   F      +  + +    +   VL+  NK D+  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 135 SKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +  A        +A+            +    SA T   V+     + +++  +
Sbjct: 132 AAPA------SEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +   TIG    +  I +     +  +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEEIVI--NNTRFLMWDIGGQE 76

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV---GNKADM 132
             R+    YY     +++V D TD    +  R  +  +  H  +++ K  +    NK D+
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAGLLIFANKQDV 134

Query: 133 DESKRAVPTSKGQALADEYG--------IKFFETSAKTNLNVEQVF 170
              K  +  ++   ++                   A T   + Q  
Sbjct: 135 ---KECMTVAE---ISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 63.4 bits (155), Expect = 9e-13
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G    GK+ LL    D       + T+        + +    +    +D  G  
Sbjct: 26  GKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEELTI--AGMTFTTFDLGGHI 80

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADM 132
           + R +   Y     GI+ + D  D       +  + ++    +     +L+ GNK D 
Sbjct: 81  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KLL +G    GK+ LL    +    T    T         + +    IK   +D  G  
Sbjct: 24  GKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEELAI--GNIKFTTFDLGGHI 78

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADM 132
           + R +   Y+    GI+ + D  D   F+  R  +  +   A       ++ GNK D 
Sbjct: 79  QARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           ++L++G    GK+ +L +   G   T+ I TIG  F + T+E   K I   +WD  GQ++
Sbjct: 167 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 221

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV-GNKADMDES 135
            R +   Y++   G++ V D  D    N  R  +  +          +LV  NK D+  +
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281

Query: 136 KRAVPTSKGQALAD--EYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             A   +    L            T A +   + +    ++  ++ +
Sbjct: 282 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 9/126 (7%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 75
            +L +G    GK+ L +R   G +  +  T+I         ++ + +   L + D  G E
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPGHE 65

Query: 76  RFR-TITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNI--EQHASDNVNKVLV-GNKA 130
             R  +   +   A  ++ V D    +    ++  ++  +  +  A  N   +L+  NK 
Sbjct: 66  SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQ 125

Query: 131 DMDESK 136
           D+  +K
Sbjct: 126 DIAMAK 131

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 15/129 (11%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +++ G    GK+ LL   +  S   + + +            D     + + D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVK 103

Query: 77  FRTITTAYYRGAM----GILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKVLV-G 127
            R   + Y +       G++ + D   D         ++ +I    + + +N   +L+  
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 163

Query: 128 NKADMDESK 136
           NK+++  ++
Sbjct: 164 NKSELFTAR 172

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 15/128 (11%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +++ G    GK+ LL   +  S   + + +            D     + + D  G  + 
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE-----PLSAADYDGSGVTLVDFPGHVKL 68

Query: 78  RTITTAYY----RGAMGILLVYD-VTDESSFNNIRNWIRNI---EQHASDNVNKVLV-GN 128
           R   + Y     +   G++ + D   D         ++ +I    + + +N   +L+  N
Sbjct: 69  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128

Query: 129 KADMDESK 136
           K+++  ++
Sbjct: 129 KSELFTAR 136

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.6 bits (136), Expect = 9e-10
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 20/159 (12%)

Query: 18  LLLIGDSGVGKSCLL-LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +LL+G    GKS +  + F +     +    +               I L + +  GQ  
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTL--YLESTSNPSLEHFSTL-IDLAVMELPGQLN 58

Query: 77  FR---TITTAYYRGAMGILLVYDVTD--ESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           +      +   ++    ++ V D  D   ++  N+   I    +  + ++N  ++ +K D
Sbjct: 59  YFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVD 117

Query: 132 M------DESKRAVPTSKGQALAD----EYGIKFFETSA 160
                   +++R +    G+ L +       + F+ TS 
Sbjct: 118 GLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 33/181 (18%)

Query: 18  LLLIGDSGVGKSCLLLRFSDG-------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           +++ G   VGKS LL   +          FTT  I  +G          +    + QI D
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGI-NVGQ--------FEDGYFRYQIID 220

Query: 71  TAG------QER----FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           T G       ER     + I    Y G + I+ ++D + E     +   I   E+   + 
Sbjct: 221 TPGLLDRPISERNEIEKQAILALRYLGNL-IIYIFDPS-EHCGFPLEEQIHLFEEVHGEF 278

Query: 121 VNK--VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
            +   ++V NK D+ + +      + +    E G+   + SA     ++ V   I + ++
Sbjct: 279 KDLPFLVVINKIDVADEENI---KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335

Query: 179 Q 179
            
Sbjct: 336 P 336

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 10/172 (5%)

Query: 16  IKLLLIGDSGVGKSCLL--LRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           + + + G++G GKS  +  LR        +  T +      R          +  WD  G
Sbjct: 70  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 129

Query: 74  --QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
                F   T               ++      N  +  + I            V  K D
Sbjct: 130 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 186

Query: 132 MD---ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            D   E+     T   + +  +  +    T  +  +    +F    +++   
Sbjct: 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 30/216 (13%), Positives = 66/216 (30%), Gaps = 60/216 (27%)

Query: 13  DCLIKL------LLIGDSGVGKSCL---LLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
             L++L      L+ G  G GK+ +   +                  DFKI         
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKM------DFKI--------- 184

Query: 64  IKLQIWDTAGQER-----FRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNI--- 113
                W               +    Y+          +    +   ++I+  +R +   
Sbjct: 185 ----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 114 EQHAS-----DNVN--KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 166
           + + +      NV   K      A  + S + + T++ + + D     F   +  T++++
Sbjct: 241 KPYENCLLVLLNVQNAKAW---NA-FNLSCKILLTTRFKQVTD-----FLSAATTTHISL 291

Query: 167 EQVFFSIARD-IKQRLA---DTDSRSEPSTIKINQP 198
           +    ++  D +K  L    D   +  P  +    P
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 22/135 (16%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           + +L++G  GVGKS     L+    G      S     G+   + +  + G  I   I D
Sbjct: 37  MTVLVLGKGGVGKSSTVNSLI----GEQVVRVSPFQAEGLRPVMVSRTMGGFTIN--IID 90

Query: 71  TAG--------QERFRTITTAYYRGAMGILLVYDVTDESSF-NNIRNWIRNIEQHASDNV 121
           T G         +    I        + +LL  D  D  +     +  +  I Q     +
Sbjct: 91  TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEI 150

Query: 122 NK--VLVGNKADMDE 134
               +LV   A    
Sbjct: 151 WCKTLLVLTHAQFSP 165

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 24/152 (15%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
               D      ++ DTAG        E     R+        A  IL + D+  E   + 
Sbjct: 275 CFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM--AEADLILYLLDLGTERLDDE 330

Query: 106 IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165
           +         H       + V NK D      A   +  +A+AD  G +    SA     
Sbjct: 331 LTEIRELKAAHP--AAKFLTVANKLDRA----ANADALIRAIADGTGTEVIGISALNGDG 384

Query: 166 VEQVFFSIARDIKQRLADTDSRSEPSTIKINQ 197
           ++     + + +   + + D   E S +  + 
Sbjct: 385 IDT----LKQHMGDLVKNLDKLHEASVLVTSL 412

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 23/123 (18%)

Query: 56  TIELDGKRIKLQIWDTAGQ-------ERF---RTITTAYYRGAMGILLVYDVTDESSFNN 105
            I +DG  + L I DTAG        ER    R         A  +L + D T   +  +
Sbjct: 46  HIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI--EQADRVLFMVDGTTTDA-VD 100

Query: 106 IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN 165
                          +   +V NKAD+        T +   +++  G      SA+T   
Sbjct: 101 PAEIWPEFIARLPAKLPITVVRNKADI--------TGETLGMSEVNGHALIRLSARTGEG 152

Query: 166 VEQ 168
           V+ 
Sbjct: 153 VDV 155

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 41/203 (20%), Positives = 68/203 (33%), Gaps = 36/203 (17%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++L G   VGKS  +   S  +       FTT        +  +   +    +   QI D
Sbjct: 32  IILSGAPNVGKSSFMNIVSRANVDVQSYSFTT-------KNLYVGHFDHKLNKY--QIID 82

Query: 71  TAG-----------QERFRTITTAYYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHA 117
           T G            E       A+  G   IL + D++++   +     N   +I+   
Sbjct: 83  TPGLLDRAFENRNTIEMTTITALAHINGV--ILFIIDISEQCGLTIKEQINLFYSIKSVF 140

Query: 118 SDNVNKVLVGNKADM----DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI 173
           S N + V+  NK D       S       K      +  IKF   S  T + VEQ   + 
Sbjct: 141 S-NKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITA 199

Query: 174 ARDIKQRLADTDSRSEPSTIKIN 196
              +K   A++    +   +   
Sbjct: 200 CELLKNDQAESILLDQEQLLNTK 222

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 22/135 (16%)

Query: 16  IKLLLIGDSGVGKSCL---LLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           + +L++G  GVGKS     ++   +   + S   + G    + +    G    L I DT 
Sbjct: 40  LTILVMGKGGVGKSSTVNSIIG--ERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTP 95

Query: 73  G-----------QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV 121
           G               ++      +    +L V  +      N  +   + I       +
Sbjct: 96  GLIEGGYINDMALNIIKSFLLD--KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI 153

Query: 122 NK--VLVGNKADMDE 134
               ++    A    
Sbjct: 154 WNKAIVALTHAQFSP 168

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 18  LLLIGDSGVGKSCLL--LRFSDGSFTTSFITTIGIDFKIRTIEL--DGKRIKLQIWDTAG 73
           +L +G++G+GKS L+  L  +      +  T  G+  +  T +L     R+KL I  T G
Sbjct: 45  ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVG 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.98
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.98
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.95
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.95
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.93
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.91
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.91
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.9
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.9
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.9
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.89
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.89
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.88
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.88
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.87
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.87
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.87
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.87
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.85
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.85
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.8
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.79
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.78
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.68
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.67
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.64
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.62
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.61
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.58
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.58
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.58
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.57
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.51
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.43
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.37
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.37
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.27
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.02
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.99
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.95
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.89
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.86
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.81
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.58
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.49
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.45
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.33
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.3
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.3
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.21
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.15
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.15
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.15
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.0
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.91
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.55
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.39
2xxa_A	433	Signal recognition particle protein; protein trans	97.39
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.36
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.27
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.27
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.26
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.22
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.21
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.2
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.19
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.16
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.15
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.13
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.12
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.11
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.1
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.09
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.08
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.06
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.04
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.04
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.02
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.01
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.01
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.0
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.0
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.99
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.99
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.98
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.98
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.98
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.98
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.97
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.96
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.96
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.96
1g6h_A	257	High-affinity branched-chain amino acid transport	96.95
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.95
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.93
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.93
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.93
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.92
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.92
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.92
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.91
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.91
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.91
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.89
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.88
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.88
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.88
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.87
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.87
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.87
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.87
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.87
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.86
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.86
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.86
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.86
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.86
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.84
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.83
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.82
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.81
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.81
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.81
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.8
3co5_A	143	Putative two-component system transcriptional RES	96.79
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.79
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.78
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.76
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.76
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.76
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.76
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.75
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.74
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.74
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.74
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.73
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.72
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.72
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.71
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.7
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.7
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.69
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.67
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.67
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.67
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.66
1via_A	175	Shikimate kinase; structural genomics, transferase	96.65
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.64
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.64
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.63
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.63
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.63
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.63
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.63
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.6
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.6
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.6
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.6
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.6
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.59
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.59
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.57
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.57
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.57
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.56
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.55
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.55
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.54
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.54
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.52
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.52
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.52
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.51
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.51
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.5
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.49
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.49
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.49
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.48
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.47
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.47
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.46
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.46
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.46
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.45
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.45
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.45
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.45
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.45
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.42
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.4
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.4
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.39
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.39
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.39
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.39
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.39
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.38
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.38
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.37
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.37
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.37
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.36
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.35
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.35
2og2_A	359	Putative signal recognition particle receptor; nuc	96.35
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.32
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.28
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.28
3uc9_A	233	Increased recombination centers protein 6; rossman	96.28
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.27
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.27
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.25
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.22
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.22
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.21
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.21
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.2
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.2
3bos_A	242	Putative DNA replication factor; P-loop containing	96.19
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.19
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.16
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.16
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.16
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.15
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.15
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.15
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.07
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.02
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.99
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.98
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.98
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.91
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.91
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.9
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.89
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.88
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.86
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.86
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.85
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.83
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.8
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.79
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.79
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.7
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.69
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.68
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.66
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.66
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.65
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.65
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.65
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.65
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.64
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.61
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.6
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.59
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.56
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.56
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.54
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.53
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.51
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.51
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.5
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.48
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.48
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.48
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.47
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.46
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.45
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.43
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.41
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.41
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.4
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.37
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.37
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.36
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.34
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.31
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.3
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.28
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.24
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.23
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.19
2qgz_A	308	Helicase loader, putative primosome component; str	95.16
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.14
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.13
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.12
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.12
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.12
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.11
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.1
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.09
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.09
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.07
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.06
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.06
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.04
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.04
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.01
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.01
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.0

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.2e-44  Score=265.08  Aligned_cols=169  Identities=38%  Similarity=0.678  Sum_probs=144.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      -+.+||+|+|++|+|||||+++|..+.+...+.+|.+.++....+..++..+.+.||||+|+++|..++..+++.+++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            34589999999999999999999999999999999999999888989999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++++|+.+..|+..+......++|++||+||+|+.+ .+.+..++++.+++.++++|++|||++|.||+++|+.
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~  169 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR  169 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHh-cCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence            999999999999999999999888777899999999999965 5778999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 027918          173 IARDIKQRLA  182 (217)
Q Consensus       173 l~~~~~~~~~  182 (217)
                      |++.+.....
T Consensus       170 i~~~i~~~~~  179 (216)
T 4dkx_A          170 VAAALPGMES  179 (216)
T ss_dssp             HHHHC-----
T ss_pred             HHHHHHhhhc
Confidence            9988865443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=8e-38  Score=231.70  Aligned_cols=171  Identities=58%  Similarity=1.007  Sum_probs=155.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            46789999999999999999999999998888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |+|||++++.++..+..|+..+......+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|+
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887766799999999999965 345677888889999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027918          172 SIARDIKQRLAD  183 (217)
Q Consensus       172 ~l~~~~~~~~~~  183 (217)
                      +|.+.+......
T Consensus       164 ~l~~~i~~~~~~  175 (206)
T 2bcg_Y          164 TMARQIKESMSQ  175 (206)
T ss_dssp             HHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhh
Confidence            999998876443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=5.7e-36  Score=221.44  Aligned_cols=171  Identities=35%  Similarity=0.629  Sum_probs=148.4

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||+||++.+...+..+++.+|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999999888777777766444 4566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +++|||+++++++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccc-cccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999887653 4789999999999865 3456778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027918          170 FFSIARDIKQRLAD  183 (217)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (217)
                      |++|.+.+......
T Consensus       168 ~~~l~~~i~~~~~~  181 (206)
T 2bov_A          168 FFDLMREIRARKME  181 (206)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccc
Confidence            99999998876543

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.1e-36  Score=225.50  Aligned_cols=169  Identities=40%  Similarity=0.715  Sum_probs=148.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            35679999999999999999999999988888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV  166 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  166 (217)
                      |+|||++++.++..+..|+..+.....    .+.|+++|+||+|+.  .+....+....++. ..+++++++||++|.|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  162 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINV  162 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999998876543    368999999999986  34456677777877 56789999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 027918          167 EQVFFSIARDIKQRLA  182 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (217)
                      +++|++|.+.+.....
T Consensus       163 ~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          163 EQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999877654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-36  Score=226.69  Aligned_cols=174  Identities=49%  Similarity=0.836  Sum_probs=145.2

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus         8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   87 (223)
T 3cpj_B            8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV   87 (223)
T ss_dssp             --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred             CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence            34577899999999999999999999999988888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++
T Consensus        88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B           88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH-LRAVPTEESKTFAQENQLLFTETSALNSENVDKA  166 (223)
T ss_dssp             EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG-GCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887666799999999999864 3456677888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 027918          170 FFSIARDIKQRLADT  184 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (217)
                      |++|.+.+.......
T Consensus       167 ~~~l~~~i~~~~~~~  181 (223)
T 3cpj_B          167 FEELINTIYQKVSKH  181 (223)
T ss_dssp             HHHHHHHHTTCC---
T ss_pred             HHHHHHHHHHHhhhc
Confidence            999999987654443

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=7.3e-35  Score=212.98  Aligned_cols=177  Identities=51%  Similarity=0.902  Sum_probs=156.3

Q ss_pred             CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918            4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (217)
Q Consensus         4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   83 (217)
                      ++..+....++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..
T Consensus        11 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   90 (189)
T 2gf9_A           11 SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTA   90 (189)
T ss_dssp             ---CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGG
T ss_pred             ccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHH
Confidence            34445666788899999999999999999999999888777888888888788888888899999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      +++.+|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|
T Consensus        91 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  169 (189)
T 2gf9_A           91 YYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED-ERVVPAEDGRRLADDLGFEFFEASAKEN  169 (189)
T ss_dssp             GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred             hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence            999999999999999999999999999999887656799999999999864 3456677888999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      .|++++|++|.+.+.++.
T Consensus       170 ~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          170 INVKQVFERLVDVICEKM  187 (189)
T ss_dssp             BSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999887654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=217.75  Aligned_cols=176  Identities=47%  Similarity=0.843  Sum_probs=145.6

Q ss_pred             cccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918            5 PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY   84 (217)
Q Consensus         5 ~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   84 (217)
                      ...++...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+
T Consensus        19 ~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   98 (201)
T 2hup_A           19 SGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY   98 (201)
T ss_dssp             -------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHH
T ss_pred             CCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH
Confidence            34456777888999999999999999999999998887778888888888888888888999999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (217)
                      ++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...++ +++++||++|
T Consensus        99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g  177 (201)
T 2hup_A           99 YRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE-LREVSLAEAQSLAEHYDILCAIETSAKDS  177 (201)
T ss_dssp             HTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred             HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc-ccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            99999999999999999999999999999887766799999999999864 345677888999999998 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      .|++++|++|.+.+....
T Consensus       178 ~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          178 SNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             BSHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999887654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=7.6e-35  Score=213.28  Aligned_cols=178  Identities=48%  Similarity=0.849  Sum_probs=154.6

Q ss_pred             cccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918            5 PARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY   84 (217)
Q Consensus         5 ~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   84 (217)
                      ...+.....+.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+
T Consensus        11 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   90 (191)
T 2a5j_A           11 SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY   90 (191)
T ss_dssp             CCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH
T ss_pred             ccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH
Confidence            33446666788999999999999999999999998888778888888888888888888999999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      ++.+|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.
T Consensus        91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~  169 (191)
T 2a5j_A           91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTAC  169 (191)
T ss_dssp             HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC-ccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999999999887666799999999999854 34567788889999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhcc
Q 027918          165 NVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~~  183 (217)
                      |++++|++|.+.+.++..+
T Consensus       170 gi~~l~~~l~~~i~~~~~~  188 (191)
T 2a5j_A          170 NVEEAFINTAKEIYRKIQQ  188 (191)
T ss_dssp             THHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHh
Confidence            9999999999998876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-35  Score=215.80  Aligned_cols=174  Identities=47%  Similarity=0.838  Sum_probs=155.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            44567789999999999999999999999988888888888888888888998889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|+++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  178 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK  178 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887766799999999999864 355677888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 027918          169 VFFSIARDIKQRLAD  183 (217)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (217)
                      +|++|.+.+......
T Consensus       179 l~~~l~~~i~~~~~~  193 (201)
T 2ew1_A          179 LFLDLACRLISEARQ  193 (201)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998876543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=3.6e-35  Score=213.34  Aligned_cols=171  Identities=71%  Similarity=1.201  Sum_probs=126.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            46789999999999999999999999888878888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++..++++++++||++|.|++++|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999887666799999999999965 355677888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027918          172 SIARDIKQRLAD  183 (217)
Q Consensus       172 ~l~~~~~~~~~~  183 (217)
                      +|.+.+......
T Consensus       164 ~l~~~i~~~~~~  175 (183)
T 2fu5_C          164 TLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999998876554

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=2.2e-34  Score=211.37  Aligned_cols=173  Identities=64%  Similarity=1.074  Sum_probs=157.2

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            34467899999999999999999999999988888888888898888999998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+....++..++++++++||++|.|++++
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  169 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  169 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999999999888777899999999999965 4566778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027918          170 FFSIARDIKQRLAD  183 (217)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (217)
                      |++|.+.+......
T Consensus       170 ~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          170 FMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999877554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=2.4e-34  Score=209.47  Aligned_cols=174  Identities=45%  Similarity=0.789  Sum_probs=156.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            45778999999999999999999999998888888888888888888888888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++++|
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  164 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAF  164 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            99999999999999999999998887666899999999999854 34567788888999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccC
Q 027918          171 FSIARDIKQRLADTD  185 (217)
Q Consensus       171 ~~l~~~~~~~~~~~~  185 (217)
                      ++|.+.+........
T Consensus       165 ~~l~~~~~~~~~~~~  179 (186)
T 2bme_A          165 VQCARKILNKIESGE  179 (186)
T ss_dssp             HHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhhcC
Confidence            999999987766543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=210.67  Aligned_cols=175  Identities=43%  Similarity=0.783  Sum_probs=154.7

Q ss_pred             cCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918            7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (217)
Q Consensus         7 ~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   86 (217)
                      ...+..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++
T Consensus        17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   96 (193)
T 2oil_A           17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR   96 (193)
T ss_dssp             ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence            34566788899999999999999999999999888877888888888788888888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      .+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.. .+.+..++++.++...+++++++||++|.|+
T Consensus        97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (193)
T 2oil_A           97 GAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQ-AREVPTEEARMFAENNGLLFLETSALDSTNV  175 (193)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            999999999999999999999999999877666799999999999865 3456678888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 027918          167 EQVFFSIARDIKQRLA  182 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (217)
                      +++|++|.+.+.++..
T Consensus       176 ~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          176 ELAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998877654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=5.3e-34  Score=210.61  Aligned_cols=174  Identities=51%  Similarity=0.924  Sum_probs=156.3

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   82 (203)
T 1zbd_A            3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM   82 (203)
T ss_dssp             CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence            34567899999999999999999999999888877888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+.+..++..++++++++||++|.|++++
T Consensus        83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  161 (203)
T 1zbd_A           83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQT  161 (203)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT-SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc-ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence            999999999999999999999999887656799999999999965 4556778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 027918          170 FFSIARDIKQRLADT  184 (217)
Q Consensus       170 ~~~l~~~~~~~~~~~  184 (217)
                      |++|.+.+.++....
T Consensus       162 ~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          162 FERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999988776554

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=207.30  Aligned_cols=172  Identities=56%  Similarity=0.961  Sum_probs=152.8

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ..++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            45678999999999999999999999998888888888888888888899988999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +++|||++++.++..+..|+..+..... +.|+++|+||+|+.+ ......++...++...+++++++||++|.|++++|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPE-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF  162 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCch-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            9999999999999999999999987654 689999999999865 45567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 027918          171 FSIARDIKQRLADT  184 (217)
Q Consensus       171 ~~l~~~~~~~~~~~  184 (217)
                      ++|.+.+.....+.
T Consensus       163 ~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          163 NCITELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999988776543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=212.16  Aligned_cols=175  Identities=44%  Similarity=0.750  Sum_probs=145.1

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .+..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   98 (200)
T 2o52_A           19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   98 (200)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence            44457789999999999999999999999988887888888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+...++..++...+++++++||++|.|+++
T Consensus        99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  177 (200)
T 2o52_A           99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP-EREVTFLEASRFAQENELMFLETSALTGENVEE  177 (200)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887666799999999999854 345667788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc
Q 027918          169 VFFSIARDIKQRLADT  184 (217)
Q Consensus       169 l~~~l~~~~~~~~~~~  184 (217)
                      +|++|.+.+.......
T Consensus       178 l~~~l~~~i~~~~~~~  193 (200)
T 2o52_A          178 AFLKCARTILNKIDSG  193 (200)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999998776543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.8e-34  Score=205.90  Aligned_cols=166  Identities=61%  Similarity=1.096  Sum_probs=144.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            56899999999999999999999998888888888888888888888878899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+.  .+....+....++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  159 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  159 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999988776679999999999993  35567788889999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 027918          174 ARDIKQRL  181 (217)
Q Consensus       174 ~~~~~~~~  181 (217)
                      .+.+.++.
T Consensus       160 ~~~~~~~~  167 (170)
T 1g16_A          160 AKLIQEKI  167 (170)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99887643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-35  Score=215.99  Aligned_cols=174  Identities=52%  Similarity=0.944  Sum_probs=156.5

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .+...++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.|||+||++.+..++..+++.
T Consensus        16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (191)
T 3dz8_A           16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG   95 (191)
T ss_dssp             ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred             cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence            35556788999999999999999999999998888888888888888888887777899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      +|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+....++.+.++...+++++++||++|.|++
T Consensus        96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (191)
T 3dz8_A           96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVR  174 (191)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence            99999999999999999999999999887766899999999999865 45677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 027918          168 QVFFSIARDIKQRLA  182 (217)
Q Consensus       168 ~l~~~l~~~~~~~~~  182 (217)
                      ++|++|.+.+.++..
T Consensus       175 ~l~~~l~~~i~~~~~  189 (191)
T 3dz8_A          175 QAFERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=2.8e-34  Score=206.00  Aligned_cols=166  Identities=37%  Similarity=0.763  Sum_probs=142.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46779999999999999999999999988887888888888878888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|+|++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            9999999999999999999998776655789999999999865 345677888899999999999999999999999999


Q ss_pred             HHHHHHH
Q 027918          172 SIARDIK  178 (217)
Q Consensus       172 ~l~~~~~  178 (217)
                      +|.+.+.
T Consensus       162 ~l~~~~~  168 (170)
T 1z08_A          162 DLCKRMI  168 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998775

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=6.3e-34  Score=206.29  Aligned_cols=169  Identities=39%  Similarity=0.705  Sum_probs=150.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            35679999999999999999999999988887788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++|.|++++|+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD-ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999999999999887766799999999999965 355677888899999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027918          172 SIARDIKQRL  181 (217)
Q Consensus       172 ~l~~~~~~~~  181 (217)
                      +|.+.+....
T Consensus       168 ~l~~~~~~~~  177 (181)
T 2efe_B          168 EIARRLPRVQ  177 (181)
T ss_dssp             HHHHTCC---
T ss_pred             HHHHHHHhcC
Confidence            9998775443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=7.6e-34  Score=205.31  Aligned_cols=168  Identities=46%  Similarity=0.846  Sum_probs=151.3

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            34567899999999999999999999999888777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++++
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887766899999999999854 3456778888999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          170 FFSIARDIK  178 (217)
Q Consensus       170 ~~~l~~~~~  178 (217)
                      |++|.+.+.
T Consensus       169 ~~~l~~~i~  177 (179)
T 1z0f_A          169 FLEAAKKIY  177 (179)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999998774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=210.64  Aligned_cols=170  Identities=45%  Similarity=0.869  Sum_probs=144.3

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ..+.+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            44457789999999999999999999999888877788888888888888888889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE  167 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  167 (217)
                      |++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++... +++++++||++|.|++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  178 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET-DREITRQQGEKFAQQITGMRFCEASAKDNFNVD  178 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence            9999999999999999999999999887766899999999999854 3456677788888874 7899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          168 QVFFSIARDIKQ  179 (217)
Q Consensus       168 ~l~~~l~~~~~~  179 (217)
                      ++|++|.+.+.+
T Consensus       179 ~l~~~l~~~i~~  190 (192)
T 2il1_A          179 EIFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-33  Score=203.37  Aligned_cols=169  Identities=53%  Similarity=0.969  Sum_probs=142.6

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ..+..++|+|+|++|+|||||+++|.+..+. ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3467899999999999999999999998875 466777788887777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA  164 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887766799999999999965 4556777888899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          170 FFSIARDIKQR  180 (217)
Q Consensus       170 ~~~l~~~~~~~  180 (217)
                      |++|.+.+.++
T Consensus       165 ~~~l~~~~~~~  175 (180)
T 2g6b_A          165 FTAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999888643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.1e-33  Score=204.82  Aligned_cols=169  Identities=36%  Similarity=0.619  Sum_probs=144.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+ +.....+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3568999999999999999999999887776666654 444566778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      +|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.  ......+....++...+++++++||++|.|++++|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  158 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY  158 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999887754 3478999999999986  355677888999999999999999999999999999


Q ss_pred             HHHHHHHHHhccc
Q 027918          172 SIARDIKQRLADT  184 (217)
Q Consensus       172 ~l~~~~~~~~~~~  184 (217)
                      +|.+.+.......
T Consensus       159 ~l~~~~~~~~~~~  171 (189)
T 4dsu_A          159 TLVREIRKHKEKM  171 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhc
Confidence            9999998776543

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=8e-34  Score=208.81  Aligned_cols=164  Identities=33%  Similarity=0.509  Sum_probs=140.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            45699999999999999999999998887766666654443 44567777889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +|||++++.+++.+..|+..+.....  .+.|+++|+||+|+..  ..+..++...++...+++++++||++|.|++++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            99999999999999988887766543  3689999999999864  4556778888889999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          171 FSIARDIKQ  179 (217)
Q Consensus       171 ~~l~~~~~~  179 (217)
                      ++|.+.+..
T Consensus       163 ~~l~~~~~~  171 (199)
T 2gf0_A          163 QELLTLETR  171 (199)
T ss_dssp             HHHHHHCSS
T ss_pred             HHHHHHHhh
Confidence            999887643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=3.1e-33  Score=207.84  Aligned_cols=173  Identities=60%  Similarity=1.073  Sum_probs=152.0

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ....+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+
T Consensus        14 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (213)
T 3cph_A           14 GKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA   93 (213)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence            44456779999999999999999999999988888888888888888888898888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |++++|||++++.+++.+..|+..+......+.|+++|+||+|+.  .+....++...++...+++++++||++|.|+++
T Consensus        94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  171 (213)
T 3cph_A           94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNE  171 (213)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999999988776679999999999993  455677888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc
Q 027918          169 VFFSIARDIKQRLAD  183 (217)
Q Consensus       169 l~~~l~~~~~~~~~~  183 (217)
                      +|++|.+.+.+....
T Consensus       172 l~~~l~~~~~~~~~~  186 (213)
T 3cph_A          172 IFFTLAKLIQEKIDS  186 (213)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998876643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=3.9e-34  Score=213.46  Aligned_cols=176  Identities=48%  Similarity=0.879  Sum_probs=150.8

Q ss_pred             cCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe----------EEEEEEeeCCCccc
Q 027918            7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK----------RIKLQIWDTAGQER   76 (217)
Q Consensus         7 ~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~   76 (217)
                      ......++.+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++.          .+.+.||||||++.
T Consensus        17 ~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~   96 (217)
T 2f7s_A           17 RGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER   96 (217)
T ss_dssp             ----CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH
T ss_pred             CcCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh
Confidence            34566688899999999999999999999999888777888887777777777655          68999999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeE
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKF  155 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  155 (217)
                      +...+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...++++
T Consensus        97 ~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~  175 (217)
T 2f7s_A           97 FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPY  175 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCE
T ss_pred             HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc-ccccCHHHHHHHHHHCCCcE
Confidence            999999999999999999999999999999999887765443 4789999999999864 34566788889999999999


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918          156 FETSAKTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      +++||++|.|++++|++|.+.+.++...
T Consensus       176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          176 FETSAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999998876554

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.8e-34  Score=208.75  Aligned_cols=171  Identities=36%  Similarity=0.697  Sum_probs=149.4

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      +.+..+..+||+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.
T Consensus        16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   95 (192)
T 2fg5_A           16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG   95 (192)
T ss_dssp             -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred             cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence            34556778999999999999999999999998877778888888877778888778999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      +|++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++
T Consensus        96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  174 (192)
T 2fg5_A           96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD-IREVPLKDAKEYAESIGAIVVETSAKNAINIE  174 (192)
T ss_dssp             CSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence            99999999999999999999999999887766799999999999854 35567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          168 QVFFSIARDIKQ  179 (217)
Q Consensus       168 ~l~~~l~~~~~~  179 (217)
                      ++|++|.+.+.+
T Consensus       175 ~l~~~l~~~i~~  186 (192)
T 2fg5_A          175 ELFQGISRQIPP  186 (192)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999887643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=202.00  Aligned_cols=163  Identities=44%  Similarity=0.750  Sum_probs=147.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999988877888888888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC--CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK--RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|++++.++..+..|+..+......+.|+++|+||+|+....  ..+..+..+.++...+++++++||++|.|++++|++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988776679999999999985432  556778888899999999999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |.+.+
T Consensus       163 l~~~i  167 (170)
T 1ek0_A          163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHH
Confidence            88654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.6e-33  Score=200.85  Aligned_cols=165  Identities=38%  Similarity=0.716  Sum_probs=149.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ..+.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999988887888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..+....++...+++++++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  161 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFI  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999999999887666799999999999865 345667888889999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          172 SIARDI  177 (217)
Q Consensus       172 ~l~~~~  177 (217)
                      +|.+.+
T Consensus       162 ~i~~~i  167 (170)
T 1z0j_A          162 EISRRI  167 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.5e-33  Score=202.00  Aligned_cols=164  Identities=46%  Similarity=0.811  Sum_probs=147.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999998888777788888887788888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+....++...++...+++++++||++|.|++++|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887666799999999999864 3456677888899999999999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |.+.+
T Consensus       163 i~~~~  167 (170)
T 1r2q_A          163 IAKKL  167 (170)
T ss_dssp             HHHTS
T ss_pred             HHHHH
Confidence            98765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.6e-33  Score=204.33  Aligned_cols=172  Identities=49%  Similarity=0.881  Sum_probs=151.2

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE-EEEEEECCe---------EEEEEEeeCCCcccccch
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK-IRTIELDGK---------RIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~   80 (217)
                      ..+..++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+..++.         .+.+.|||+||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            4577899999999999999999999998888777888877776 556666654         689999999999999999


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      +..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...+++++++|
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLED-QRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCCEEEEE
Confidence            99999999999999999999999999999999887664 5789999999999864 345667888899999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcc
Q 027918          160 AKTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      |++|.|++++|++|.+.+.++...
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999998876654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=210.38  Aligned_cols=171  Identities=45%  Similarity=0.770  Sum_probs=138.4

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .+...+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.
T Consensus        21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  100 (199)
T 2p5s_A           21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK  100 (199)
T ss_dssp             -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred             CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence            34555677999999999999999999999998877777888878877888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC-----CCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE-----SKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      +|++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.+     ..+.+..+..+.++...+++++++||++
T Consensus       101 ~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~  180 (199)
T 2p5s_A          101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD  180 (199)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred             CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence            99999999999999999999999999877666799999999999852     2456677888899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDIK  178 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (217)
                      |.|++++|++|.+.+.
T Consensus       181 g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          181 GSNIVEAVLHLAREVK  196 (199)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998774

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=1.5e-33  Score=201.81  Aligned_cols=164  Identities=37%  Similarity=0.700  Sum_probs=147.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            56799999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+ .+....++++.++...+++++++||++|.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999887765 4689999999999864 3456678888899999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |.+.+.
T Consensus       161 l~~~~~  166 (168)
T 1z2a_A          161 LAEKHL  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998775

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.8e-33  Score=202.99  Aligned_cols=168  Identities=32%  Similarity=0.486  Sum_probs=147.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4579999999999999999999998888877777777666 666778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++++.++...+++++++||++|.|++++|+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  161 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR  161 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh-cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence            99999999999999999998866543 4789999999999965 566788899999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 027918          172 SIARDIKQRLA  182 (217)
Q Consensus       172 ~l~~~~~~~~~  182 (217)
                      +|.+.+.....
T Consensus       162 ~l~~~~~~~~~  172 (181)
T 3t5g_A          162 RIILEAEKMDG  172 (181)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHhcC
Confidence            99998865543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1.6e-33  Score=205.90  Aligned_cols=170  Identities=43%  Similarity=0.820  Sum_probs=145.5

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-chhhhccc
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYR   86 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~   86 (217)
                      +.......+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+. .++..+++
T Consensus        13 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (189)
T 1z06_A           13 PRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR   92 (189)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT
T ss_pred             CCCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc
Confidence            45555678999999999999999999999998888888888888888888888888999999999999988 78889999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC--
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN--  163 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--  163 (217)
                      .+|++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|  
T Consensus        93 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  171 (189)
T 1z06_A           93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPND  171 (189)
T ss_dssp             TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGG
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cceeCHHHHHHHHHHcCCEEEEEeCCcCCc
Confidence            9999999999999999999999999998765 45799999999999854 3456778888999999999999999999  


Q ss_pred             -CCHHHHHHHHHHHHH
Q 027918          164 -LNVEQVFFSIARDIK  178 (217)
Q Consensus       164 -~~i~~l~~~l~~~~~  178 (217)
                       .|++++|++|.+.+.
T Consensus       172 ~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          172 NDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             GSCHHHHHHHHC----
T ss_pred             ccCHHHHHHHHHHHHh
Confidence             999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=7e-33  Score=201.24  Aligned_cols=167  Identities=35%  Similarity=0.589  Sum_probs=148.6

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .....+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345679999999999999999999999888877778777666 6677788888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC-CCCCHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEQ  168 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~  168 (217)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++++.++..++++++++||+ +|.|+++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~  171 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDK  171 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHH
Confidence            999999999999999999999886643 35789999999999965 56678888999999999999999999 9999999


Q ss_pred             HHHHHHHHHHH
Q 027918          169 VFFSIARDIKQ  179 (217)
Q Consensus       169 l~~~l~~~~~~  179 (217)
                      +|++|.+.+.+
T Consensus       172 l~~~l~~~i~~  182 (183)
T 3kkq_A          172 TFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=5.9e-33  Score=200.46  Aligned_cols=166  Identities=40%  Similarity=0.696  Sum_probs=144.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            35679999999999999999999999988888888888888888888898889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCCH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLNV  166 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i  166 (217)
                      ++|||++++.++..+..|+..+.....    .+.|+++|+||+|+.  .+....+++..++. ..+++++++||++|.|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999999877653    578999999999986  35567778888887 55689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+..
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=207.20  Aligned_cols=171  Identities=27%  Similarity=0.377  Sum_probs=141.8

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-hhhhccc
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYR   86 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~   86 (217)
                      .+...+..++|+|+|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            344557789999999999999999999976544434445556666677778888889999999999987765 7778899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      .+|++|+|||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.|
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~  174 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHN  174 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc-cCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence            99999999999999999999999998877653 4789999999999965 455677888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQ  179 (217)
Q Consensus       166 i~~l~~~l~~~~~~  179 (217)
                      ++++|++|++.+..
T Consensus       175 v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          175 TRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=5.7e-33  Score=201.06  Aligned_cols=168  Identities=35%  Similarity=0.600  Sum_probs=147.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.|||+||++.+...+..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            45699999999999999999999999887777777776655 66778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      +|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  164 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  164 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            999999999999999999888543 345789999999999865 345677888889999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 027918          172 SIARDIKQRLA  182 (217)
Q Consensus       172 ~l~~~~~~~~~  182 (217)
                      +|.+.+.+...
T Consensus       165 ~l~~~~~~~~~  175 (181)
T 2fn4_A          165 QLVRAVRKYQE  175 (181)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhhc
Confidence            99999876654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.3e-33  Score=203.31  Aligned_cols=170  Identities=42%  Similarity=0.703  Sum_probs=135.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3567999999999999999999999998888888888878877777776 455899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-HhCCeEEEEcCCCCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALAD-EYGIKFFETSAKTNLN  165 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~  165 (217)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+....+.+..++...++. ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999998877653    5789999999999965555667788888887 4568999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027918          166 VEQVFFSIARDIKQRL  181 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (217)
                      ++++|++|.+.+.++.
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=2.1e-33  Score=209.29  Aligned_cols=171  Identities=20%  Similarity=0.455  Sum_probs=144.6

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++.+|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3445679999999999999999999999998888888877665 355667777799999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEE
Q 027918           90 GILLVYDVTDESSFNN-IRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFF  156 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~  156 (217)
                      ++|+|||++++.++.. +..|+..+..... +.|+++|+||+|+.++           .+.+..+++..++..+++ +++
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999998 6889999988764 6899999999998653           356788899999999998 999


Q ss_pred             EEcCCCCCC-HHHHHHHHHHHHHHHhc
Q 027918          157 ETSAKTNLN-VEQVFFSIARDIKQRLA  182 (217)
Q Consensus       157 ~~Sa~~~~~-i~~l~~~l~~~~~~~~~  182 (217)
                      ++||++|.| ++++|++|.+.+.....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998875543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.3e-33  Score=204.04  Aligned_cols=166  Identities=34%  Similarity=0.545  Sum_probs=144.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-eEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-KRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4579999999999999999999999888777778887788888888876 568999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ++|||++++.+++.+..|+..+.....   ..+|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH-MRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc-ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999988876432   2344899999999864 345667888899999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          169 VFFSIARDIKQ  179 (217)
Q Consensus       169 l~~~l~~~~~~  179 (217)
                      +|++|.+.+..
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=3.9e-33  Score=199.95  Aligned_cols=165  Identities=28%  Similarity=0.395  Sum_probs=132.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-hhhhcccCCcEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGILL   93 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i~   93 (217)
                      .+||+|+|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999999999998777666666666777888888899889999999999998876 77778899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence            9999999999999999999887654 4689999999999864 4667888899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027918          173 IARDIKQR  180 (217)
Q Consensus       173 l~~~~~~~  180 (217)
                      |.+.+..+
T Consensus       161 l~~~i~~~  168 (169)
T 3q85_A          161 AVRQIRLR  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=1.6e-32  Score=202.50  Aligned_cols=168  Identities=33%  Similarity=0.614  Sum_probs=147.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeE---------------------------
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR---------------------------   63 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   63 (217)
                      ..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+..++..                           
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence            34567999999999999999999999998888888888888887777777655                           


Q ss_pred             ----------EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           64 ----------IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        64 ----------~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                                +.+.||||||++.+...+..+++.+|++++|||++++.++..+..|+..+.....  .|+++|+||+|+ 
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D~-  159 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKIDK-  159 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTTC-
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCCc-
Confidence                      7999999999999999999999999999999999999999999999999887653  899999999993 


Q ss_pred             CCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                       .......+++..++...+++++++||++|.|++++|++|.+.+..+.+
T Consensus       160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  207 (208)
T 3clv_A          160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII  207 (208)
T ss_dssp             -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence             345677888999999999999999999999999999999998876643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=8.6e-33  Score=201.29  Aligned_cols=166  Identities=24%  Similarity=0.382  Sum_probs=141.7

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .......+||+|+|++|+|||||+++|++..+...+.++.+  .+...+.+++..+.+.||||+|++.+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            44556679999999999999999999999988876666632  344777889988999999999998766     77889


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC-CCCCccChHHHHHHHHHhC-CeEEEEcCCCCCC
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMD-ESKRAVPTSKGQALADEYG-IKFFETSAKTNLN  165 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~  165 (217)
                      |++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ...+.+..+++..++..++ ++++++||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            999999999999999999999999987653 468999999999985 2345677888999999987 8999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027918          166 VEQVFFSIARDIKQRL  181 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (217)
                      ++++|++|.+.+...+
T Consensus       167 v~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          167 VERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999887664

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.1e-33  Score=202.09  Aligned_cols=165  Identities=40%  Similarity=0.715  Sum_probs=148.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            35699999999999999999999999888888888888888888888988889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|.|++++|++
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSD-KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccc-cCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999877666799999999999865 3456677888888999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |.+.+.
T Consensus       171 l~~~~~  176 (179)
T 2y8e_A          171 VAAALP  176 (179)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=198.50  Aligned_cols=168  Identities=30%  Similarity=0.452  Sum_probs=134.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--ccchhhhcccCCcE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--FRTITTAYYRGAMG   90 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~   90 (217)
                      ++.++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            457999999999999999999999987764433 455566667778888888999999999987  56677788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  159 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR-CREVSVEEGRACAVVFDCKFIETSATLQHNVAEL  159 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence            999999999999999999998887653 34689999999999965 3556677888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhc
Q 027918          170 FFSIARDIKQRLA  182 (217)
Q Consensus       170 ~~~l~~~~~~~~~  182 (217)
                      |++|.+.+..+..
T Consensus       160 ~~~l~~~~~~~~~  172 (175)
T 2nzj_A          160 FEGVVRQLRLRRR  172 (175)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999876654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-33  Score=209.28  Aligned_cols=168  Identities=32%  Similarity=0.622  Sum_probs=142.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            35679999999999999999999999888777777776544 45566777779999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-------ccChHHHHHHHHHhCC-eEEEEcCCC
Q 027918           92 LLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR-------AVPTSKGQALADEYGI-KFFETSAKT  162 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~~Sa~~  162 (217)
                      |+|||++++++++.+. .|+..+..... +.|+++|+||+|+.+...       .+..+++..++..++. +++++||++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            9999999999999987 79998887654 689999999999855321       2367788889998885 999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 027918          163 NLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~~~~  181 (217)
                      |.|++++|++|.+.+....
T Consensus       164 g~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             CTTHHHHHHHHHHHHHCC-
T ss_pred             CCCHHHHHHHHHHHHhhhh
Confidence            9999999999999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=9e-33  Score=202.65  Aligned_cols=171  Identities=29%  Similarity=0.550  Sum_probs=146.9

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .......+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   95 (194)
T 3reg_A           17 IENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS   95 (194)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             ccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence            344567799999999999999999999999888777777776655 4567788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHHhCCe-EEEEcCCCCCC
Q 027918           89 MGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-KRAVPTSKGQALADEYGIK-FFETSAKTNLN  165 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~  165 (217)
                      |++++|||++++.++..+ ..|+..+..... +.|+++|+||+|+.++ .+.+..+++..++..+++. ++++||++|.|
T Consensus        96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A           96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            999999999999999997 668888876653 6899999999998653 3567788899999999987 99999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027918          166 VEQVFFSIARDIKQRL  181 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (217)
                      ++++|++|.+.+..+.
T Consensus       175 i~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          175 LNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999886543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=207.34  Aligned_cols=173  Identities=28%  Similarity=0.494  Sum_probs=142.1

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ..+....+||+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   96 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV   96 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence            45556789999999999999999999999998877777776655 45556666668999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      |++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  175 (201)
T 3oes_A           97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP-EREVQAVEGKKLAESWGATFMESSARENQLTQ  175 (201)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcc-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            999999999999999999999999876532 4689999999999865 45677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 027918          168 QVFFSIARDIKQRLAD  183 (217)
Q Consensus       168 ~l~~~l~~~~~~~~~~  183 (217)
                      ++|++|.+.+......
T Consensus       176 ~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          176 GIFTKVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            9999999998766543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=203.62  Aligned_cols=167  Identities=28%  Similarity=0.461  Sum_probs=139.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .......+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||+|++.+... ..+++.+
T Consensus        15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~   92 (187)
T 3c5c_A           15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA   92 (187)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred             HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence            44456779999999999999999999999988877777777555 355677888899999999999988874 6789999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC-CCCC
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA-KTNL  164 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~  164 (217)
                      |++++|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+ .+.+..+++..++..++++++++|| ++|.
T Consensus        93 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~  171 (187)
T 3c5c_A           93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ-YRQVTKAEGVALAGRFGCLFFEVSACLDFE  171 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-cCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence            99999999999999999999999987764   24789999999999854 4567788899999999999999999 8999


Q ss_pred             CHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIK  178 (217)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (217)
                      |++++|++|.+.+.
T Consensus       172 gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          172 HVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999998774

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=201.72  Aligned_cols=169  Identities=47%  Similarity=0.810  Sum_probs=150.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            33457999999999999999999999998888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.  ...+..++...++...+++++++||++|.|++++
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  168 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA  168 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence            9999999999999999999998876542 468999999999984  3456678888999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027918          170 FFSIARDIKQRL  181 (217)
Q Consensus       170 ~~~l~~~~~~~~  181 (217)
                      |++|.+.+....
T Consensus       169 ~~~l~~~~~~~~  180 (195)
T 1x3s_A          169 FEELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHHTSG
T ss_pred             HHHHHHHHHhhh
Confidence            999999887543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=202.51  Aligned_cols=172  Identities=30%  Similarity=0.506  Sum_probs=138.7

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      .......++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+..++..+++++
T Consensus        14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (201)
T 2q3h_A           14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT   92 (201)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred             CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence            34456789999999999999999999999887766667665444 45667788888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eE
Q 027918           89 MGILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KF  155 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~  155 (217)
                      |++++|||++++.++..+. .|+..+..... +.|+++|+||+|+...           .+.+..++...++...+. ++
T Consensus        93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (201)
T 2q3h_A           93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY  171 (201)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence            9999999999999999997 69988887654 6899999999998652           345677888899998887 99


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          156 FETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      +++||++|.|++++|++|.+.+.....
T Consensus       172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          172 IECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            999999999999999999998876654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-32  Score=200.68  Aligned_cols=167  Identities=28%  Similarity=0.537  Sum_probs=144.7

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      .+....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d   91 (194)
T 2atx_A           13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD   91 (194)
T ss_dssp             CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence            4445779999999999999999999999888777777766554 455667777789999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEE
Q 027918           90 GILLVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFF  156 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~  156 (217)
                      ++++|||+++++++..+. .|+..+..... +.|+++|+||+|+.+..           +.+..++...++...+. +++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (194)
T 2atx_A           92 VFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYV  170 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEE
Confidence            999999999999999987 79988887654 68999999999996532           45677888899999887 999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHH
Q 027918          157 ETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ++||++|.|++++|++|.+.+.
T Consensus       171 ~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          171 ECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=1.3e-33  Score=208.91  Aligned_cols=170  Identities=25%  Similarity=0.476  Sum_probs=112.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEECCe--EEEEEEeeCCCcccccchhhhcccCC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIELDGK--RIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ...++|+|+|++|+|||||+++|.+.  .+...+.++.+.++....+.+++.  .+.+.||||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999999998  676677777777777778888876  78999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC-CC
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT-NL  164 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~  164 (217)
                      |++|+|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+..+.+..+++..++..++++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988765   57999999999998652355677889999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q 027918          165 NVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~~~  182 (217)
                      |++++|++|.+.+.....
T Consensus       178 gi~~l~~~i~~~~~~~~~  195 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYE  195 (208)
T ss_dssp             --CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.6e-32  Score=202.48  Aligned_cols=172  Identities=28%  Similarity=0.401  Sum_probs=137.8

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhccc
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYR   86 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~   86 (217)
                      .......+||+|+|++|+|||||+++|.+.... ....++.+.+++...+.+++..+.+.+|||+|.+. +..+...+++
T Consensus        31 ~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~  110 (211)
T 2g3y_A           31 SESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ  110 (211)
T ss_dssp             ----CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred             cccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence            345567799999999999999999999964432 22233455666667778888888999999999876 4556677889


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      .++++|+|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++.+.++...+++++++||++|.|
T Consensus       111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~-~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~  189 (211)
T 2g3y_A          111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHN  189 (211)
T ss_dssp             CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc-CceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999999988887542 34689999999999964 355667777888888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 027918          166 VEQVFFSIARDIKQRL  181 (217)
Q Consensus       166 i~~l~~~l~~~~~~~~  181 (217)
                      ++++|++|.+.+....
T Consensus       190 v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          190 VKELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999886543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=4.2e-32  Score=197.43  Aligned_cols=169  Identities=35%  Similarity=0.626  Sum_probs=146.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            34579999999999999999999999888777666665444 45567788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++..++++++++||++|.|++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            999999999999999999998877654 4789999999999865 34567788889999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 027918          171 FSIARDIKQRLA  182 (217)
Q Consensus       171 ~~l~~~~~~~~~  182 (217)
                      ++|.+.+..++.
T Consensus       173 ~~l~~~i~~~~~  184 (187)
T 2a9k_A          173 FDLMREIRARKM  184 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999998876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.3e-32  Score=194.56  Aligned_cols=163  Identities=36%  Similarity=0.662  Sum_probs=139.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999888776666665444 3556778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+ .+....+++..++...+++++++||++|.|++++|++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc-cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999998877654 4789999999999865 3456778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |.+.+.
T Consensus       161 l~~~i~  166 (168)
T 1u8z_A          161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.6e-32  Score=196.10  Aligned_cols=164  Identities=24%  Similarity=0.389  Sum_probs=136.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|++|+|||||+++|.++.+.. +.++.+.. +...+.+++..+.+.+|||||++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            456999999999999999999999988876 55665533 456677888889999999999875     45778899999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC-CCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDE-SKRAVPTSKGQALADEY-GIKFFETSAKTNLNVE  167 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~  167 (217)
                      +|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+ ..+.+..++++.++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876665543   24789999999999852 24567778888888876 5899999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 027918          168 QVFFSIARDIKQRLAD  183 (217)
Q Consensus       168 ~l~~~l~~~~~~~~~~  183 (217)
                      ++|++|.+.+......
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999988776543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.1e-32  Score=194.06  Aligned_cols=163  Identities=32%  Similarity=0.460  Sum_probs=121.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.+...... .++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999997665432 23333333 45567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++.+.++...+++++++||++|.|++++|++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS-SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc-ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999999999887653 35789999999999965 46677888889999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027918          174 ARDIKQR  180 (217)
Q Consensus       174 ~~~~~~~  180 (217)
                      .+.+..+
T Consensus       159 ~~~~~~~  165 (166)
T 3q72_A          159 VRQIRLR  165 (166)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.5e-32  Score=193.41  Aligned_cols=161  Identities=35%  Similarity=0.683  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            589999999999999999999998887777777665543 5566777778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      ||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+ .+....++...++... +.+++++||++|.|++++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc-cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            99999999999999998887653 34789999999999865 3556678888888887 789999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |.+.+
T Consensus       161 l~~~i  165 (167)
T 1c1y_A          161 LVRQI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=4.9e-32  Score=193.47  Aligned_cols=163  Identities=36%  Similarity=0.615  Sum_probs=142.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+|+|++|+|||||+++|.++.+...+.++.+.. ....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            5899999999999999999999988877666666533 356677888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++.+++.+..|+..+..... .+.|+++|+||+|+.. .+....++.+.++...+++++++||++|.|++++|++|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc-cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988876543 4789999999999854 35566778888999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          174 ARDIKQ  179 (217)
Q Consensus       174 ~~~~~~  179 (217)
                      .+.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            987743

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.2e-32  Score=198.17  Aligned_cols=168  Identities=34%  Similarity=0.567  Sum_probs=144.4

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .....++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.|||+||++. ...+..+++.+|+
T Consensus        24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            345679999999999999999999999988877777776554 45567788889999999999988 7788889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQ  168 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~  168 (217)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+ .+.+..++...++...+++++++||++|. |+++
T Consensus       102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~  180 (196)
T 2atv_A          102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITE  180 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccc-ccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence            999999999999999999999887754 35789999999999865 35567788889999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHh
Q 027918          169 VFFSIARDIKQRL  181 (217)
Q Consensus       169 l~~~l~~~~~~~~  181 (217)
                      +|++|.+.+.+..
T Consensus       181 l~~~l~~~i~~~~  193 (196)
T 2atv_A          181 IFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=1.9e-31  Score=194.86  Aligned_cols=171  Identities=36%  Similarity=0.581  Sum_probs=134.3

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      +.+.-..++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.|||+||++.+...+..+++.+
T Consensus        15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (190)
T 3con_A           15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   93 (190)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred             cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence            44445669999999999999999999999887766666655443 45667788888999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      |++++|||++++.++..+..|+..+..... .+.|+++|+||+|+..  .....++++.++...+++++++||++|.|++
T Consensus        94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  171 (190)
T 3con_A           94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVE  171 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            999999999999999999999988877653 4689999999999865  4566788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 027918          168 QVFFSIARDIKQRLA  182 (217)
Q Consensus       168 ~l~~~l~~~~~~~~~  182 (217)
                      ++|++|.+.+.+.+.
T Consensus       172 ~l~~~l~~~~~~~~~  186 (190)
T 3con_A          172 DAFYTLVREIRQYRM  186 (190)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998876543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=2.7e-32  Score=198.52  Aligned_cols=165  Identities=24%  Similarity=0.539  Sum_probs=141.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+..++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            35679999999999999999999999988777777776555 34566777789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027918           92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET  158 (217)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  158 (217)
                      ++|||++++++++.+ ..|+..+..... +.|+++|+||+|+.++           .+.+..+++..++..++ ++++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 679888877654 6899999999998642           24567788899999887 799999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHH
Q 027918          159 SAK-TNLNVEQVFFSIARDIK  178 (217)
Q Consensus       159 Sa~-~~~~i~~l~~~l~~~~~  178 (217)
                      ||+ ++.|++++|+.|.+.+.
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHHHHh
Confidence            999 68999999999998775

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=4.8e-32  Score=200.59  Aligned_cols=166  Identities=24%  Similarity=0.537  Sum_probs=142.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .+..+||+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            46679999999999999999999999988877777776555 34566777779999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEE
Q 027918           92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFET  158 (217)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~  158 (217)
                      |+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.++           .+.+..++++.++..++ ++++++
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999998 679988877654 6899999999998642           24567788889998887 699999


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHH
Q 027918          159 SAK-TNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       159 Sa~-~~~~i~~l~~~l~~~~~~  179 (217)
                      ||+ ++.|++++|+.|.+.+..
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=2.6e-31  Score=196.02  Aligned_cols=165  Identities=32%  Similarity=0.596  Sum_probs=142.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            467799999999999999999999998888777777766654 3467788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEE
Q 027918           92 LLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFET  158 (217)
Q Consensus        92 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~  158 (217)
                      ++|||+++++++..+ ..|+..+..... +.|+++|+||+|+....           +.+..++...++...+. +++++
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999999998 578888877654 68999999999986531           34667788888888887 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ||++|.|++++|++|.+.+.
T Consensus       180 SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.3e-31  Score=194.78  Aligned_cols=163  Identities=32%  Similarity=0.615  Sum_probs=141.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+|+|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999888776666665444 4556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEcC
Q 027918           94 VYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETSA  160 (217)
Q Consensus        94 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~Sa  160 (217)
                      |||++++.++..+. .|+..+..... +.|+++|+||+|+.+..           +.+..++...++...+. +++++||
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            99999999999987 69888887655 68999999999986531           45667788888988886 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~  178 (217)
                      ++|.|++++|++|.+.+.
T Consensus       162 ~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHh
Confidence            999999999999998874

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4.6e-32  Score=202.35  Aligned_cols=171  Identities=31%  Similarity=0.510  Sum_probs=145.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .+..+||+|+|.+|+|||||+++|++..+...+.++.+.......+... +..+.+.||||||++.+...+..++..+|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            4567999999999999999999999888877777777766666665554 334889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +|+|||++++.++..+..|+..+......+.|+++|+||+|+.+ ...+..+....++...+++++++||++|.|++++|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999888776799999999999865 45677788888888889999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 027918          171 FSIARDIKQRLAD  183 (217)
Q Consensus       171 ~~l~~~~~~~~~~  183 (217)
                      ++|.+.+......
T Consensus       167 ~~l~~~~~~~~~~  179 (218)
T 4djt_A          167 LHLARIFTGRPDL  179 (218)
T ss_dssp             HHHHHHHHCCTTC
T ss_pred             HHHHHHHhccccc
Confidence            9999988665443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=212.61  Aligned_cols=168  Identities=65%  Similarity=1.089  Sum_probs=141.5

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      ...++.+||+|+|.+|+|||||+++|.+..+...+.++.+.++....+..++..+.+.||||||++.+...+..+++.+|
T Consensus        28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d  107 (199)
T 3l0i_B           28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH  107 (199)
T ss_dssp             CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence            34467899999999999999999999999888888888888888888889998899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ++|+|||++++.+++.+..|+..+......+.|+++|+||+|+.. .+.+..++.+.++..++++++++||++|.|++++
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l  186 (199)
T 3l0i_B          108 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT-KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS  186 (199)
T ss_dssp             EEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc-cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999999999999887766899999999999965 3445556677888889999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          170 FFSIARDIK  178 (217)
Q Consensus       170 ~~~l~~~~~  178 (217)
                      |++|.+.+.
T Consensus       187 ~~~l~~~l~  195 (199)
T 3l0i_B          187 FMTMAAEIK  195 (199)
T ss_dssp             HHHHTTTTT
T ss_pred             HHHHHHHHH
Confidence            999987653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=199.16  Aligned_cols=167  Identities=34%  Similarity=0.610  Sum_probs=123.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3569999999999999999999999887766666665433 456677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+....           +.+..++...++...+. +++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999987 69888877653 68999999999986532           25667788889998887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Q 027918          160 AKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~~~  181 (217)
                      |++|.|++++|++|.+.+.+..
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.5e-31  Score=196.68  Aligned_cols=173  Identities=16%  Similarity=0.299  Sum_probs=129.3

Q ss_pred             ccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhc
Q 027918            6 ARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY   84 (217)
Q Consensus         6 ~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   84 (217)
                      +.+..+....++|+|+|.+|+|||||+++|.+..+.. .+.++.+.  ....+...+  +.+.||||||++.+..++..+
T Consensus         8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~   83 (199)
T 4bas_A            8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGR--VAFTVFDMGGAKKFRGLWETY   83 (199)
T ss_dssp             --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETT--EEEEEEEECCSGGGGGGGGGG
T ss_pred             cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCC--EEEEEEECCCCHhHHHHHHHH
Confidence            3445666788999999999999999999999998877 66777663  334445555  799999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCCCccChHH---HHHHHHHhCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--------DNVNKVLVGNKADMDESKRAVPTSK---GQALADEYGI  153 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--------~~~pvivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~  153 (217)
                      ++.+|++|+|||+++++++..+..|+..+.....        .+.|+++|+||+|+...........   ...++...++
T Consensus        84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred             HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence            9999999999999999999999998888765421        2689999999999965321111111   1111244567


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          154 KFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      +++++||++|.|++++|++|.+.+.....
T Consensus       164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          164 VIFASNGLKGTGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             EEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999877644

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=7.9e-31  Score=186.87  Aligned_cols=161  Identities=37%  Similarity=0.638  Sum_probs=140.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..++..+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            47999999999999999999999887766666655433 45567788788999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++.++..+..|+..+..... .+.|+++|+||+|+..  .....+....++...+++++++||++|.|+++++++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998877653 3689999999999865  4566788888999999999999999999999999999


Q ss_pred             HHHHH
Q 027918          174 ARDIK  178 (217)
Q Consensus       174 ~~~~~  178 (217)
                      .+.+.
T Consensus       160 ~~~~~  164 (166)
T 2ce2_X          160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98774

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-31  Score=190.90  Aligned_cols=162  Identities=32%  Similarity=0.498  Sum_probs=138.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999998877666666654443 445667777899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |||++++.+++.+..|+..+.....  .+.|+++|+||+|+.. .+.+...+.+.++...+++++++||++|.|++++|+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  159 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence            9999999999999999888876542  3689999999999854 345666778888888999999999999999999999


Q ss_pred             HHHHHH
Q 027918          172 SIARDI  177 (217)
Q Consensus       172 ~l~~~~  177 (217)
                      +|.+.+
T Consensus       160 ~l~~~~  165 (172)
T 2erx_A          160 ELLNLE  165 (172)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            998755

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=5.4e-32  Score=198.59  Aligned_cols=168  Identities=23%  Similarity=0.308  Sum_probs=135.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----------cccceeeeEEEEEE-EECCeEEEEEEeeCCCccccc
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----------FITTIGIDFKIRTI-ELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      ..+..+||+|+|++|+|||||++.+.+. +...           ..++.+.++....+ ..++..+.+.||||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            4467899999999999999999777654 3333           23344444444434 456677899999999999999


Q ss_pred             chhhhcccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC
Q 027918           79 TITTAYYRGAMGILLVYDVT------DESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG  152 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~  152 (217)
                      ..+..+++.+|++|+|||++      +.+++..+..|+..+.. ...+.|+++|+||+|+.+   ....++++.++...+
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~  164 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG  164 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcC
Confidence            99999999999999999999      45677777778777632 234799999999999855   367788899999999


Q ss_pred             C-eEEEEcCCCCCCHHHHHHHHHHHHHHHhcc
Q 027918          153 I-KFFETSAKTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       153 ~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      + +++++||++|.|++++|++|.+.+..+..+
T Consensus       165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          165 KFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             CSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             CceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            8 999999999999999999999999877653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.7e-31  Score=195.04  Aligned_cols=165  Identities=34%  Similarity=0.602  Sum_probs=136.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|.+|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34689999999999999999999998887777777665554 34677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNI-RNWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.++..+ ..|+..+..... +.|+++|+||+|+....           +.+..++...++...+. +++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 568888877553 68999999999986531           34566778888888887 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (217)
                      |++|.|++++|++|.+.+..
T Consensus       181 A~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=5.7e-32  Score=202.34  Aligned_cols=170  Identities=31%  Similarity=0.609  Sum_probs=147.6

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .+......+||+|+|.+|+|||||+++|+.+.+...+.++.+.+.....+..++..+.+.||||||++.+..++..+++.
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34556778999999999999999999977776666777777788888888888888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      +|++++|||++++.++..+..|+..+..... +.|+++|+||+|+.+...   ..+...++...+++++++||++|.|++
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~gi~  163 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFE  163 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSS---CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCccccccc---cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999988764 689999999999865322   235556788889999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027918          168 QVFFSIARDIKQRL  181 (217)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (217)
                      ++|++|.+.+....
T Consensus       164 ~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          164 KPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHhCc
Confidence            99999999887654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.98  E-value=5.5e-32  Score=196.20  Aligned_cols=164  Identities=32%  Similarity=0.638  Sum_probs=125.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            45689999999999999999999998877666666553332 23445566688899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC---------ccChHHHHHHHHHhCC-eEEEEcCC
Q 027918           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR---------AVPTSKGQALADEYGI-KFFETSAK  161 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~~Sa~  161 (217)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+...         .+..++...++...+. +++++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            999999999999997 69988887654 689999999999855322         2466778889988886 99999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIK  178 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (217)
                      +|.|++++|++|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999988763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.98  E-value=2.5e-30  Score=189.44  Aligned_cols=167  Identities=29%  Similarity=0.433  Sum_probs=134.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC--CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-ccchhhhcccCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-FRTITTAYYRGAM   89 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d   89 (217)
                      ...+||+|+|++|+|||||+++|.+..  +... .++.+.++....+.+++..+.+.+|||+|.+. +..++..+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcc-ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456999999999999999999999633  2332 23455566667778888888999999999776 4556777889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.. .+.+..++...++...+++++++||++|.|+++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc-cccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            9999999999999999999988887653 34689999999999864 345666777788888889999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027918          169 VFFSIARDIKQRL  181 (217)
Q Consensus       169 l~~~l~~~~~~~~  181 (217)
                      +|++|.+.+....
T Consensus       162 lf~~l~~~~~~~~  174 (192)
T 2cjw_A          162 LFEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999886543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=8.2e-30  Score=187.69  Aligned_cols=169  Identities=49%  Similarity=0.849  Sum_probs=147.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.++..+..+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            56799999999999999999999999888777788888888888889998899999999999999888888999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|+|+.+..+++.+..|+..+......+.|+++|+||+|+.+ ......+++..++...++.++++|++++.|++++|++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc-ccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999998998888766555689999999999864 3455667788899999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 027918          173 IARDIKQRLA  182 (217)
Q Consensus       173 l~~~~~~~~~  182 (217)
                      |.+.+.....
T Consensus       162 l~~~~~~~~~  171 (199)
T 2f9l_A          162 ILTEIYRIVS  171 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998877654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=9.1e-31  Score=193.57  Aligned_cols=163  Identities=32%  Similarity=0.606  Sum_probs=137.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|.+|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4569999999999999999999999888776666664 444566677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+....           +.+..++...++...+. +++++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  185 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence            999999999999997 6988888776 468999999999986532           23667788888888885 699999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~  177 (217)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTTCTTHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.4e-31  Score=195.47  Aligned_cols=169  Identities=21%  Similarity=0.379  Sum_probs=129.1

Q ss_pred             CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhh
Q 027918            4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   83 (217)
Q Consensus         4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   83 (217)
                      +.+++.......++|+|+|++|+|||||+++|.+..+...+.++.+..+.  .+...+  +.+.|||+||++.+...+..
T Consensus        11 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~   86 (188)
T 1zd9_A           11 SSGLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGN--VTIKLWDIGGQPRFRSMWER   86 (188)
T ss_dssp             --------CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETT--EEEEEEEECCSHHHHTTHHH
T ss_pred             cccccccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCC--EEEEEEECCCCHhHHHHHHH
Confidence            34444555567899999999999999999999998887767777665554  344555  78999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEE
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFE  157 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (217)
                      +++.+|++++|||+++++++..+..|+..+.... ..+.|+++|+||+|+....   ..++......     ..++++++
T Consensus        87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~  163 (188)
T 1zd9_A           87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYS  163 (188)
T ss_dssp             HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEE
T ss_pred             HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEE
Confidence            9999999999999999999999999888876542 2478999999999986521   2222222111     23468999


Q ss_pred             EcCCCCCCHHHHHHHHHHHHHH
Q 027918          158 TSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       158 ~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      +||++|.|++++|++|.+.+..
T Consensus       164 ~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          164 ISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999999999887643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.9e-30  Score=189.61  Aligned_cols=164  Identities=18%  Similarity=0.327  Sum_probs=129.0

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      .......++|+|+|.+|+|||||+++|.+.. +...+.++.+  .....+.+++  +.+.||||||++.+...+..+++.
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence            3444567999999999999999999999877 4555555554  4555666666  789999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEc
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHAS---DNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETS  159 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~S  159 (217)
                      +|++++|||++++.++..+..|+..+.....   .+.|+++|+||+|+..   ....+++..+..     ..+++++++|
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~S  167 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASD  167 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEcc
Confidence            9999999999999999999999888876543   4789999999999854   233455555543     2356899999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (217)
                      |++|.|++++|++|.+.+..
T Consensus       168 a~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          168 AIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999887643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=3.6e-30  Score=184.68  Aligned_cols=159  Identities=23%  Similarity=0.414  Sum_probs=126.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.++.+.. +.++.+  .....+.+++  ..+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG--FNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS--EEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc--cceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            345899999999999999999999887653 344444  4445556665  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i  166 (217)
                      +|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+..   ...+....     +...+++++++||++|.|+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGL  156 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence            9999999999999988887776543 2468999999999986532   12222221     2233568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+.+
T Consensus       157 ~~l~~~l~~~i~~  169 (171)
T 1upt_A          157 DEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.97  E-value=6.6e-29  Score=181.75  Aligned_cols=168  Identities=50%  Similarity=0.878  Sum_probs=147.7

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCC
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA   88 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (217)
                      ....+..++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            44557789999999999999999999999988888888888888888889999888899999999999998899999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           89 MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      +++++|+|..+..+++.+..|+..+......+.|+++|+||+|+.+ ........+..++...++.++++|++++.++++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~-~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~  181 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNGLSFIETSALDSTNVEA  181 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999988898887765555689999999999864 344566778889999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          169 VFFSIARDI  177 (217)
Q Consensus       169 l~~~l~~~~  177 (217)
                      +|++|.+.+
T Consensus       182 l~~~l~~~i  190 (191)
T 1oix_A          182 AFQTILTEI  190 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.1e-29  Score=183.40  Aligned_cols=159  Identities=23%  Similarity=0.394  Sum_probs=127.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.+.. ...+.++.+  .....+..++  ..+.+|||||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            466999999999999999999999887 555566655  3344555665  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.   ...++......     ..+++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA---LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDL  167 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC---CCHHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence            9999999999999999888876542 246899999999998653   22233332221     23568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+.+
T Consensus       168 ~~l~~~l~~~i~~  180 (186)
T 1ksh_A          168 LPGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=8.4e-31  Score=186.86  Aligned_cols=156  Identities=21%  Similarity=0.410  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.++.+.. +.++.+  .....+..++  +.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS--CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc--eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999877654 345544  3334444544  78999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      |+++++++..+..|+..+... ...+.|+++|+||+|+.+.   ....+.....     ...+++++++||++|.|++++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  152 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  152 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence            999999999999988887653 2346899999999998652   1222222211     123457999999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          170 FFSIARDIKQ  179 (217)
Q Consensus       170 ~~~l~~~~~~  179 (217)
                      |++|.+.+..
T Consensus       153 ~~~l~~~i~~  162 (164)
T 1r8s_A          153 LDWLSNQLRN  162 (164)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHhh
Confidence            9999987753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=3.8e-30  Score=186.70  Aligned_cols=161  Identities=20%  Similarity=0.285  Sum_probs=123.9

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG   87 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   87 (217)
                      +.......++|+|+|.+|+|||||+++|.+..+ ..+.++.+...  ..+.+++  +.+.|||+||++.+...+..+++.
T Consensus        14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~   88 (181)
T 2h17_A           14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTN   88 (181)
T ss_dssp             -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred             ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence            345556679999999999999999999999877 44445544333  4455566  799999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCC
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAK  161 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~  161 (217)
                      +|++++|||++++++++.+..|+..+.... ..+.|+++|+||+|+...   ...+++....     ...+++++++||+
T Consensus        89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~  165 (181)
T 2h17_A           89 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCAL  165 (181)
T ss_dssp             CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCC
Confidence            999999999999999999999888876542 246899999999998542   2333333332     1234689999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARD  176 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~  176 (217)
                      +|.|++++|++|.+.
T Consensus       166 ~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          166 TGEGLCQGLEWMMSR  180 (181)
T ss_dssp             TTBTHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHhh
Confidence            999999999998753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=7e-30  Score=187.96  Aligned_cols=155  Identities=19%  Similarity=0.290  Sum_probs=120.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+++|++|+|||||+++|.+..+.. +.++.+..  ...+.+++  +.+.+|||||++.++..+..+++.+|++++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999877643 34444433  34566777  799999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCeE
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIKF  155 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~  155 (217)
                      |||+++++++..+..|+..+.... ..+.|+++|+||+|+..   ....+++..++..                 .++++
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            999999999999999988886542 34789999999999854   4556666666542                 23589


Q ss_pred             EEEcCCCCCCHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      +++||++|.|++++|++|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.4e-30  Score=188.62  Aligned_cols=160  Identities=21%  Similarity=0.326  Sum_probs=124.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||+++|.++.+. .+.++.+..  ...+.+++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999987765 445554433  34455666  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (217)
                      +|+|++++++++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++.....     ..+++++++||++|.|+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  165 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence            9999999999999999988887653 246899999999998642   23344433332     23568999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQR  180 (217)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (217)
                      +++|++|.+.+...
T Consensus       166 ~~l~~~l~~~~~~~  179 (187)
T 1zj6_A          166 CQGLEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999877443

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=1.9e-29  Score=184.49  Aligned_cols=155  Identities=22%  Similarity=0.292  Sum_probs=125.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+|+|++|+|||||+++|.++.+.. +.++.+.  ....+.+++  +.+.+|||||++.++..+..+++.+|++++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHP--TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSC--EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCC--CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            45799999999999999999999887653 3444443  345666777  799999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH------------hCCeEEEEcC
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE------------YGIKFFETSA  160 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa  160 (217)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+..   ....+++..+...            .+++++++||
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            999999999999999988886542 24689999999999864   3445555555432            3468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARD  176 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (217)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=4.2e-30  Score=186.55  Aligned_cols=159  Identities=22%  Similarity=0.383  Sum_probs=124.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..++|+++|++|+|||||+++|.+..+. .+.++.+  .....+..++  +.+.+|||||++.++..+..+++.+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCC--eEEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999999987543 3344444  3344556665  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  166 (217)
                      +|||+++++++..+..|+..+... ...+.|+++|+||+|+.+..   ..++.....     ...+++++++||++|.|+
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            999999999999998888777543 22468999999999986532   222222221     123468999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+.+
T Consensus       166 ~~l~~~l~~~~~~  178 (181)
T 1fzq_A          166 QDGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=2.7e-30  Score=189.33  Aligned_cols=159  Identities=21%  Similarity=0.395  Sum_probs=120.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....++|+|+|++|+|||||+++|.++.+.. +.++.+  +....+..++  +.+.+|||||++.+...+..+++.+|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            3566999999999999999999999877653 344444  4445556665  7999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-H----HHhCCeEEEEcCCCCCC
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-A----DEYGIKFFETSAKTNLN  165 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~~~  165 (217)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++... .    ...+++++++||++|.|
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g  177 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTG  177 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence            99999999999999999888876532 246899999999998552   122222211 1    12235799999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIK  178 (217)
Q Consensus       166 i~~l~~~l~~~~~  178 (217)
                      ++++|++|.+.+.
T Consensus       178 i~~l~~~l~~~i~  190 (192)
T 2b6h_A          178 LYDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=5.8e-30  Score=188.07  Aligned_cols=167  Identities=19%  Similarity=0.253  Sum_probs=121.5

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchh---hh
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTIT---TA   83 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~---~~   83 (217)
                      ...+.+..+||+|+|++|+|||||++++.+. +......+...........+. +..+.+.||||+|++.|....   ..
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            3455667899999999999999999988875 333222222222222233332 445799999999999987765   78


Q ss_pred             cccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------CCccChHHHHHHHH----Hh
Q 027918           84 YYRGAMGILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES------KRAVPTSKGQALAD----EY  151 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~------~~~~~~~~~~~~~~----~~  151 (217)
                      +++.+|++|+|||++++  +++..+..|+..+.... .+.|+++|+||+|+..+      .+.+..+..+.++.    ..
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999999997  67777777777765443 37999999999998542      12344455667777    66


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          152 GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      +++++++||++ .|++++|+.|++.+
T Consensus       171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          171 HLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CcceEEEEech-hhHHHHHHHHHHHh
Confidence            78999999999 99999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.9e-28  Score=193.61  Aligned_cols=164  Identities=30%  Similarity=0.604  Sum_probs=142.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3458999999999999999999999888777666665444 456677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.           .+.+..++...++...+. +++++|
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            999999999999987 68888877655 7899999999998543           245677888899999987 999999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (217)
                      |++|.|++++|++|.+.+.
T Consensus       311 a~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999998775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=2.6e-29  Score=182.31  Aligned_cols=160  Identities=21%  Similarity=0.359  Sum_probs=123.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.++.+ ..+.++.+.  ....+.+++  ..+.+||+||++.+...+..+++.+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~--~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCcc--ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4569999999999999999999998766 334444443  334455665  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----hCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----YGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i  166 (217)
                      +|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.   ...+++......     .+++++++||++|.|+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi  167 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGI  167 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            9999999999999999888876543 347899999999998652   233333333221     2357999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQR  180 (217)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (217)
                      +++|++|.+.+.++
T Consensus       168 ~~l~~~l~~~~~~~  181 (183)
T 1moz_A          168 TEGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.1e-30  Score=186.55  Aligned_cols=163  Identities=24%  Similarity=0.431  Sum_probs=120.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC--CCCCCcccceeeeEEEEEEEE---CCeEEEEEEeeCCCcccccchhhhcccCCc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG--SFTTSFITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQERFRTITTAYYRGAM   89 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (217)
                      .+||+|+|++|+|||||+++|.+.  .+...+.++.+.++....+..   ++..+.+.+|||+|++.+..++..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999984  455556677776666555443   234578999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC---hHHHHHHHHHhCCe----EEEEcCC
Q 027918           90 GILLVYDVTDE-SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP---TSKGQALADEYGIK----FFETSAK  161 (217)
Q Consensus        90 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~  161 (217)
                      ++++|||++++ .+++.+..|+..+..... +.|+++|+||+|+.+. ....   .+..+.++...+++    ++++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTHLDVSDE-KQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEECGGGCCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEECCCcccc-hhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999987 578999999998876543 6899999999998542 2211   23345555556765    9999999


Q ss_pred             CCC-CHHHHHHHHHHHHHH
Q 027918          162 TNL-NVEQVFFSIARDIKQ  179 (217)
Q Consensus       162 ~~~-~i~~l~~~l~~~~~~  179 (217)
                      +|. +++++++.|.+.+..
T Consensus       160 ~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          160 EESDALAKLRKTIINESLN  178 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHC
T ss_pred             cCchhHHHHHHHHHHHHhc
Confidence            997 999999998877654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=9.7e-30  Score=185.67  Aligned_cols=160  Identities=19%  Similarity=0.342  Sum_probs=126.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|++|+|||||+++|.++.+.. +.++.+  .....+..++  +.+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG--VNLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT--CCEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc--eEEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 344444  3334455665  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHH-----HHHhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQAL-----ADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i  166 (217)
                      +|+|+++++++..+..|+..+.... ..+.|+++|+||+|+.+..   ..++....     +...+++++++||++|.|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  171 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA---SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL  171 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence            9999999999999988887776543 2468999999999986531   12222221     1223468999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQR  180 (217)
Q Consensus       167 ~~l~~~l~~~~~~~  180 (217)
                      +++|++|.+.+.++
T Consensus       172 ~~l~~~l~~~i~~~  185 (189)
T 2x77_A          172 VEGMDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999988654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=2.1e-31  Score=196.88  Aligned_cols=163  Identities=32%  Similarity=0.626  Sum_probs=135.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+..++..+.+.||||||++.+...+..+++.+|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4569999999999999999999998887766666654333 344556666688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----------CccChHHHHHHHHHhCC-eEEEEc
Q 027918           93 LVYDVTDESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK-----------RAVPTSKGQALADEYGI-KFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~S  159 (217)
                      +|||++++.+++.+. .|+..+..... +.|+++|+||+|+.+..           +.+..++...++...+. +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999887 78888776544 68999999999986532           14455667777888887 899999


Q ss_pred             CCCCCCHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~  177 (217)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=3.9e-28  Score=175.25  Aligned_cols=159  Identities=21%  Similarity=0.206  Sum_probs=121.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..++|+|+|++|+|||||+++|.+..+...+.++.+.+.....+..++  ..+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4568999999999999999999999888776666666666666677777  57889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-------C--CeEEEEcCCCC
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-------G--IKFFETSAKTN  163 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  163 (217)
                      +|+|++++.......    .+......+.|+++|+||+|+...    ..+.........       +  ++++++||++|
T Consensus        84 ~v~d~~~~~~~~~~~----~l~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           84 LVVAADDGVMPQTVE----AINHAKAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             EEEETTCCCCHHHHH----HHHHHGGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             EEEECCCCCcHHHHH----HHHHHHhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            999998843222221    222222236899999999998652    222333322222       1  48999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 027918          164 LNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~~  181 (217)
                      .|++++|++|.+.+...+
T Consensus       156 ~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhhhhhc
Confidence            999999999998876543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=4e-28  Score=173.49  Aligned_cols=153  Identities=20%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc--
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR--   86 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--   86 (217)
                      .++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++  ..+.+|||||+..+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998776555555555555556666666  689999999988775      23355554  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      +++++++|+|+++.+.   ...|+..+...   +.|+++|+||+|+... ..+.. +.+.++..++++++++||++|.|+
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKS-LGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHH-TTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccc-cChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence            8999999999988643   34576666553   6899999999998532 22222 356788888899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          167 EQVFFSIARDI  177 (217)
Q Consensus       167 ~~l~~~l~~~~  177 (217)
                      +++|++|.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=2.5e-27  Score=177.96  Aligned_cols=166  Identities=23%  Similarity=0.191  Sum_probs=119.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc------cc---cchhhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE------RF---RTITTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------~~---~~~~~~   83 (217)
                      +..++|+|+|.+|+|||||+++|++..+.....+..+.+.....+..++  ..+.||||||..      ..   ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            4569999999999999999999999877544444444455555555565  789999999983      21   112234


Q ss_pred             cccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH---HHHHHHHHhC--CeEE
Q 027918           84 YYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS---KGQALADEYG--IKFF  156 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~~~  156 (217)
                      ++..+|++++|||++++.++.  ....|+..+.... .+.|+++|+||+|+.+. ..+..+   ....++...+  ++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM-DSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc-hhhHHHHHHHHHHHHHhcCCCceEE
Confidence            567889999999999987754  2334555555432 26899999999998653 333332   4566677776  8999


Q ss_pred             EEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          157 ETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      ++||++|.|++++|++|.+.+.....
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2.8e-28  Score=181.30  Aligned_cols=161  Identities=17%  Similarity=0.257  Sum_probs=112.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe-EEEEEEeeCCCcccccc-hhhhcccCCcE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK-RIKLQIWDTAGQERFRT-ITTAYYRGAMG   90 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~   90 (217)
                      ...++|+|+|++|+|||||+++|.+..+...+.++ +.+...  +.+++. .+.+.||||||++.+.. ++..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            34689999999999999999999998877665543 333333  555532 47899999999999988 78889999999


Q ss_pred             EEEEEeCCChh-hHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCCCCCCCCc-cChHHHHH-------------------
Q 027918           91 ILLVYDVTDES-SFNNIRN-WIRNIEQH--ASDNVNKVLVGNKADMDESKRA-VPTSKGQA-------------------  146 (217)
Q Consensus        91 ~i~v~d~~~~~-s~~~~~~-~~~~l~~~--~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~-------------------  146 (217)
                      +++|||+++.. ++..+.. |...+...  ...+.|+++|+||+|+...... ...+.+..                   
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4555555 44444332  2346899999999998653211 00111111                   


Q ss_pred             -------------HHHHh---CCeEEEEcCCCC------CCHHHHHHHHHHH
Q 027918          147 -------------LADEY---GIKFFETSAKTN------LNVEQVFFSIARD  176 (217)
Q Consensus       147 -------------~~~~~---~~~~~~~Sa~~~------~~i~~l~~~l~~~  176 (217)
                                   |+...   +++|++|||++|      .|++++|++|.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                         11111   568999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=5.1e-29  Score=190.16  Aligned_cols=166  Identities=25%  Similarity=0.358  Sum_probs=122.4

Q ss_pred             CCCCCceeEEEEEcCC---------CCcHHHHHHHHHc---CCCCCCcccce-eeeEEEEE--------------EEECC
Q 027918            9 RADYDCLIKLLLIGDS---------GVGKSCLLLRFSD---GSFTTSFITTI-GIDFKIRT--------------IELDG   61 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~---------~~GKttli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~   61 (217)
                      .......+||+|+|.+         |+|||||+++|.+   ..+...+.++. +.++....              ...++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3345667999999999         9999999999998   45555555543 22222111              11355


Q ss_pred             eEEEEEEee-----------------------CCCcccccchhhhccc---------------------CCcEEEEEEeC
Q 027918           62 KRIKLQIWD-----------------------TAGQERFRTITTAYYR---------------------GAMGILLVYDV   97 (217)
Q Consensus        62 ~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~   97 (217)
                      ..+.+.|||                       ++|++.|..++..+++                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            668999999                       6677777777777777                     79999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCCHHHHHHHH
Q 027918           98 TDE--SSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        98 ~~~--~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      +++  .+++.+..|+..+... ...+.|+++|+||+|+... +.+  ++.+.++.. .+++++++||++|.|++++|++|
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~-~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l  249 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVE-RYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL  249 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCH-HHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccccc-HHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence            998  8999999999988765 3346899999999998542 222  466677765 47899999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      .+.+
T Consensus       250 ~~~l  253 (255)
T 3c5h_A          250 VQLI  253 (255)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.1e-28  Score=193.07  Aligned_cols=159  Identities=20%  Similarity=0.393  Sum_probs=119.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...++|+|+|.+|+|||||+++|.+..+... .+|.+  .....+...+  +.+.||||||++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~--~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETT--EEEEEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccc--eEEEEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4568999999999999999999998876543 34433  4444555665  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHH-----HhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALAD-----EYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  166 (217)
                      +|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+..   ..+++.....     ..+++++++||++|.|+
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi  314 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGL  314 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc---CHHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence            9999999999999988777665433 3478999999999986532   2222222211     12357999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++|++|.+.+..
T Consensus       315 ~el~~~l~~~l~~  327 (329)
T 3o47_A          315 YEGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987743

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=4.4e-27  Score=183.94  Aligned_cols=160  Identities=22%  Similarity=0.320  Sum_probs=124.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-----cchhhhcc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-----RTITTAYY   85 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~   85 (217)
                      ..+||+++|++|+|||||+++|+++...   ..+.+|.+  .....+.+++ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~--~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCS--EEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccc--eEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            3589999999999999999999987332   23344444  4444455544 379999999999988     67888899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCC-CCc----cChHHHHHHHHHhC---CeE
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDES-KRA----VPTSKGQALADEYG---IKF  155 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~  155 (217)
                      +++|++|+|||++++++++.+..|...+....  ..+.|+++|+||+|+.+. .+.    ...+++..++..++   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999887765554432  346999999999998642 122    44577788888887   799


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      +++||++ .++.++|..+++.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTT
T ss_pred             EEeeecC-ChHHHHHHHHHHHH
Confidence            9999999 89999998887654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.95  E-value=2e-27  Score=173.20  Aligned_cols=157  Identities=22%  Similarity=0.282  Sum_probs=118.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC-----------cccccchhhhc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-----------QERFRTITTAY   84 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G-----------~~~~~~~~~~~   84 (217)
                      ++|+|+|++|+|||||+++|.+..+...+.++.+......  ...    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999999888776666655444333  333    689999999           56677777777


Q ss_pred             ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC
Q 027918           85 YRG-AMGILLVYDVTDESSFNNI-RNWIRN--------I-EQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI  153 (217)
Q Consensus        85 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l-~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  153 (217)
                      ++. ++++++++++.+..++..+ ..|...        + ......+.|+++|+||+|+....    .+..+.++..++.
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~  151 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV----QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH----HHHHHHHHHHHTC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH----HHHHHHHHHHhhh
Confidence            777 7777777777777777666 456542        2 22222468999999999986532    5667788888876


Q ss_pred             e-------EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          154 K-------FFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       154 ~-------~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      +       ++++||++|.|++++|++|.+.+.+...
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            4       7999999999999999999998866443

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.95  E-value=4e-27  Score=169.46  Aligned_cols=153  Identities=21%  Similarity=0.236  Sum_probs=115.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------hhhcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------TTAYY   85 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~   85 (217)
                      .++|+|+|++|+|||||+++|.+.... ....++.+.++....+.+++  ..+.+|||||...+...        ...++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            479999999999999999999987643 33344555666667777887  46899999998653221        12357


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      +.+|++++|+|++++.+++ ...|+..+......+.|+++|+||+|+.+....        ++...+.+++++||++|.|
T Consensus        82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTCTT
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCCCC
Confidence            8999999999999988765 346777777665557999999999998542111        1222457899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIK  178 (217)
Q Consensus       166 i~~l~~~l~~~~~  178 (217)
                      ++++|++|.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=7.1e-27  Score=170.18  Aligned_cols=157  Identities=20%  Similarity=0.249  Sum_probs=123.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc-
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   86 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   86 (217)
                      ..++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||+..+.      .++..++. 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            458999999999999999999998766555566666677777777777  789999999988774      34555664 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                       .++++++|+|.++   ++....|+..+..   .+.|+++|+||+|+... .... ...+.++...+++++++||++|.|
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence             5999999999975   4555667766655   36899999999998532 1222 356778888899999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQR  180 (217)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (217)
                      ++++|++|.+.+...
T Consensus       156 v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          156 IEELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.94  E-value=1.1e-26  Score=164.94  Aligned_cols=150  Identities=19%  Similarity=0.202  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------ccchhhhcccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FRTITTAYYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~   87 (217)
                      ++|+|+|++|+|||||+++|.+..+. ....++.+.+.....+..++  ..+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999987754 33344555566666677777  5889999999886       34456678899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCCH
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLNV  166 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i  166 (217)
                      +|++++|+|++++.+... ..+...+..   .+.|+++|+||+|+.+.     .++...++ ..++ +++++||++|.|+
T Consensus        80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~-----~~~~~~~~-~~~~~~~~~~Sa~~~~gv  149 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKH-----ELYLGPLY-GLGFGDPIPTSSEHARGL  149 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGG-----GGGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred             CCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccc-----hHhHHHHH-hCCCCCeEEEecccCCCh
Confidence            999999999988543322 112222222   26899999999998653     13333444 5666 8999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          167 EQVFFSIARDI  177 (217)
Q Consensus       167 ~~l~~~l~~~~  177 (217)
                      +++|++|.+.+
T Consensus       150 ~~l~~~l~~~l  160 (161)
T 2dyk_A          150 EELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            99999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=4.9e-27  Score=172.00  Aligned_cols=161  Identities=15%  Similarity=0.182  Sum_probs=108.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------ccccc
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR   78 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   78 (217)
                      +.+.+..++|+|+|.+|+|||||+++|.+..+.....++.+..........++   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            44456779999999999999999999998875443334333333333334444   699999999          66677


Q ss_pred             chhhhcccCC---cEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC--hHHHHH-HHHHhC
Q 027918           79 TITTAYYRGA---MGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP--TSKGQA-LADEYG  152 (217)
Q Consensus        79 ~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~--~~~~~~-~~~~~~  152 (217)
                      ..+..+++.+   |++++|+|++++.+..... ++..+..   .+.|+++|+||+|+... ....  .+++.. +....+
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~  168 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPK-GKWDKHAKVVRQTLNIDPE  168 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCG-GGHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh-HHHHHHHHHHHHHHcccCC
Confidence            7777777766   9999999999877665543 2222332   36899999999998652 2111  122222 222345


Q ss_pred             CeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          153 IKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       153 ~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ++++++||++|.|++++|++|.+.+
T Consensus       169 ~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          169 DELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEccCCCCHHHHHHHHHHHh
Confidence            7999999999999999999998765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=3e-26  Score=174.92  Aligned_cols=156  Identities=17%  Similarity=0.173  Sum_probs=122.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch------hhhcc-
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------TTAYY-   85 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~~~~~-   85 (217)
                      ...++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+..++  ..+.||||||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999999876655566667777666676666  78999999999877653      24555 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           86 -RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        86 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                       ..+|++++|+|+++.++.   ..|...+...   +.|+++|+||+|+... .... .....++..++++++++||++|.
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~-~~i~-~~~~~l~~~lg~~vi~~SA~~g~  152 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKK-TGMK-IDRYELQKHLGIPVVFTSSVTGE  152 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHH-TTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCc-cchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence             589999999999986543   3355555443   6899999999998532 2222 23677888899999999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIK  178 (217)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (217)
                      |++++|++|.+.+.
T Consensus       153 gi~el~~~i~~~~~  166 (258)
T 3a1s_A          153 GLEELKEKIVEYAQ  166 (258)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999988653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=8.4e-28  Score=186.81  Aligned_cols=157  Identities=18%  Similarity=0.223  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc---hhhhcccCCcE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT---ITTAYYRGAMG   90 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~   90 (217)
                      ||+++|+.|+|||||++++.++....   ...+|.+.++..  +  + ..++++||||+|+++|+.   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v--~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F--S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E--C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E--c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999988764432   245666655542  2  2 237999999999999974   46889999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC------CccChHHHHHHHHH----hCCeEEEE
Q 027918           91 ILLVYDVTDE--SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK------RAVPTSKGQALADE----YGIKFFET  158 (217)
Q Consensus        91 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~~  158 (217)
                      +|+|||++++  ++...+..|+..+.... .+.|+++|+||+|+..+.      +.+..++.+++++.    +++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999987  33444444555554443 379999999999996532      34556667777775    57899999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ||++ .++.++|..|++.+.++
T Consensus       155 SAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSSTT
T ss_pred             ccCC-CcHHHHHHHHHHHHHhh
Confidence            9998 58999999998876544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=4e-26  Score=166.90  Aligned_cols=160  Identities=19%  Similarity=0.238  Sum_probs=112.0

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------ccccc
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFR   78 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~   78 (217)
                      +.+....++|+|+|++|+|||||+++|++..... ..++.+..........+.   .+.+|||||          ...+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            4445667899999999999999999999887432 222222222222333333   588999999          56667


Q ss_pred             chhhhcccCC---cEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC
Q 027918           79 TITTAYYRGA---MGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG  152 (217)
Q Consensus        79 ~~~~~~~~~~---d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~  152 (217)
                      .++..+++.+   +++++|+|+++..+..  .+..|+.   ..   +.|+++|+||+|+.+.. .....+.+..++...+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            7777777665   9999999988754332  2333332   22   68999999999986422 2233344555555534


Q ss_pred             -CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          153 -IKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       153 -~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                       ++++++||++|.|++++|++|.+.+.
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHhh
Confidence             79999999999999999999998774

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.93  E-value=2.4e-26  Score=175.18  Aligned_cols=151  Identities=17%  Similarity=0.152  Sum_probs=118.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----------hhhhcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAYY   85 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~   85 (217)
                      .+|+|+|.+|+|||||+|+|.+........++.+.+.....+..++  ..+.||||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999999876666677777788888888887  5899999999887664          445566


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           86 --RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        86 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                        ..+|++++|+|+++.+....+..+   +..   .+.|+++|+||+|+.... . .......+...++++++++||++|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~---~~~pvilv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~vi~~SA~~g  151 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE---LGKPVVVALNMMDIAEHR-G-ISIDTEKLESLLGCSVIPIQAHKN  151 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT---SCSCEEEEEECHHHHHHT-T-CEECHHHHHHHHCSCEEECBGGGT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHH---cCCCEEEEEEChhcCCcC-C-cHHHHHHHHHHcCCCEEEEECCCC
Confidence              889999999999986554433332   322   378999999999975321 1 112345577888999999999999


Q ss_pred             CCHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARD  176 (217)
Q Consensus       164 ~~i~~l~~~l~~~  176 (217)
                      .|++++|++|.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999775

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=5.1e-25  Score=172.24  Aligned_cols=160  Identities=17%  Similarity=0.095  Sum_probs=125.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEEC-CeEEEEEEeeCCCccccc----------ch
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFR----------TI   80 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~----------~~   80 (217)
                      ...-.|+|+|.+|+|||||+|+|++..+.. ...+..+..........+ +  ..+.||||||+....          ..
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHHHH
Confidence            445689999999999999999999988763 333334444444444555 5  789999999986543          45


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEE
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFET  158 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (217)
                      +..+++.+|++++|+|++++.+..+...|+..+...   +.|+++|+||+|+.. ......+....+....+  .+++++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIG-PAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSS-SGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCC-CHHHHHHHHHHHHHhccCCCeEEEE
Confidence            667889999999999999988888877777777663   689999999999863 23445566677777765  789999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ||++|.|++++|++|.+.+.
T Consensus       162 SA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999988774

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.93  E-value=1.9e-26  Score=193.02  Aligned_cols=164  Identities=23%  Similarity=0.308  Sum_probs=123.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEE------EEE--CCeEEEEEEeeCCCcccccchhhh
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT------IEL--DGKRIKLQIWDTAGQERFRTITTA   83 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~Dt~G~~~~~~~~~~   83 (217)
                      ....+||+++|.+|+|||||+++|.+..+...+.++.+.++....      +.+  ++..+.+.+||+||++.+...+..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            466799999999999999999999999888777787776666442      112  223478999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN  163 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (217)
                      +++.+|++|+|+|+++.   +.+..|+..+..+.. +.|+++|+||+|+.. ...+..+..+.++...+.+++++||++|
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENP-SYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCT-TCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCccc-ccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            99999999999999765   556778888887764 589999999999965 4556677788888888899999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDIKQR  180 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~~~  180 (217)
                      .|++++++.|.+.+...
T Consensus       193 ~gi~eL~~~l~~~~~~~  209 (535)
T 3dpu_A          193 DGVESIAKSLKSAVLHP  209 (535)
T ss_dssp             --CTTHHHHHHHHHTCT
T ss_pred             cCHHHHHHHHHHHHhcc
Confidence            99999999999887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=5.8e-26  Score=174.32  Aligned_cols=153  Identities=19%  Similarity=0.203  Sum_probs=115.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------chhhhccc-
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------TITTAYYR-   86 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~-   86 (217)
                      +.++|+++|.+|+|||||+|+|.+........++.+.+.....+  +. ...+.+|||||...+.      ..+..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            35899999999999999999999876544445555554443333  33 3689999999998775      34556665 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           87 -GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        87 -~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                       .+|++++|+|+++.+..   ..|...+...   +.|+++|+||+|+... .... .....++..++++++++||++|.|
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~~---~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~g  150 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIET---GIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQTG  150 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHHT---CSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHhc---CCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence             69999999999886543   4455555542   6899999999998532 1222 345678888899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDI  177 (217)
Q Consensus       166 i~~l~~~l~~~~  177 (217)
                      ++++|++|.+.+
T Consensus       151 i~el~~~i~~~~  162 (272)
T 3b1v_A          151 VDQVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999999997754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.93  E-value=4.1e-25  Score=170.01  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=122.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc------hhhhcc--c
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT------ITTAYY--R   86 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~   86 (217)
                      .++|+|+|++|+|||||+++|.+..+.....++.+.+.....+..++  ..+.+|||||...+..      .+..++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            58999999999999999999999877666677777788777788877  5799999999887765      455565  6


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      .+|++++|+|+++.+   ....|...+....  ..|+++|+||+|+... ..... ....+...++++++++||++|.|+
T Consensus        81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~-~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           81 NADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKK-KGAKI-DIKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             CCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHH-HTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred             CCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcc-cccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence            899999999998753   2333444444431  2899999999997431 11121 266778888999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIKQ  179 (217)
Q Consensus       167 ~~l~~~l~~~~~~  179 (217)
                      +++++.|.+.+..
T Consensus       154 ~~l~~~i~~~~~~  166 (271)
T 3k53_A          154 EELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.93  E-value=8.2e-26  Score=174.02  Aligned_cols=153  Identities=16%  Similarity=0.170  Sum_probs=117.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc----------hhhhc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTAY   84 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   84 (217)
                      .++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+...+  ..+.+|||||...+..          .+..+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999876666677777777777777766  4788999999887662          12333


Q ss_pred             c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           85 Y--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        85 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      +  ..+|++++|+|+++.+....   |...+...   +.|+++|+||+|+.... . .......+...++++++++||++
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~-~-~~~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQ-N-IRIEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHT-T-EEECHHHHHHHHTSCEEECCCGG
T ss_pred             HhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhh-h-HHHHHHHHHHhcCCCEEEEEcCC
Confidence            3  68999999999988654433   34444443   68999999999985321 1 12234667788899999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|+++++++|.+.+
T Consensus       153 g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          153 GRGIEALKLAIDRYK  167 (274)
T ss_dssp             GHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=2.9e-25  Score=165.94  Aligned_cols=165  Identities=13%  Similarity=0.058  Sum_probs=109.5

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCC--CCCcccceeeeEEEEEEE-ECCeEEEEEEeeCCCc----------cc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF--TTSFITTIGIDFKIRTIE-LDGKRIKLQIWDTAGQ----------ER   76 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~----------~~   76 (217)
                      ......++|+|+|.+|+|||||+++|++...  .....++.+.+.....+. .++  ..+.||||||.          +.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAE--PVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTS--CSEEEEECCCCCSSCCCSTHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCC--CcEEEEcCCCCCcccCChhhHHH
Confidence            3445678999999999999999999998762  233333334343333333 223  68999999994          33


Q ss_pred             ccchhhhcccC---CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHH--
Q 027918           77 FRTITTAYYRG---AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADE--  150 (217)
Q Consensus        77 ~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~--  150 (217)
                      +...+..+++.   +|++++|+|++++.+. ....|+..+..   .+.|+++|+||+|+...... ...+........  
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            44555566655   7889999999875432 22334444444   36899999999998542110 011222222222  


Q ss_pred             -----hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          151 -----YGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       151 -----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                           ...+++++||++|.|++++|++|.+.+...
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence                 446899999999999999999999887544

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=4.6e-24  Score=175.12  Aligned_cols=156  Identities=19%  Similarity=0.150  Sum_probs=100.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAYY   85 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~   85 (217)
                      .++|+|+|.+|+|||||+|+|.+... .....++++.+.....+.+++  ..+.||||||...+...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            48999999999999999999998754 345566666777777778888  689999999987765433        3477


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      +.+|++++|+|++++.++..+..+...+....  +.|+++|+||+|+..... .   ..+.+......+++++||++|.|
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg~G  384 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNGDG  384 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCCCC
Confidence            89999999999999877654434333333332  689999999999865321 1   22334443347899999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIK  178 (217)
Q Consensus       166 i~~l~~~l~~~~~  178 (217)
                      +++++++|.+.+.
T Consensus       385 I~eL~~~i~~~~~  397 (476)
T 3gee_A          385 IDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.91  E-value=1.9e-24  Score=176.68  Aligned_cols=161  Identities=18%  Similarity=0.149  Sum_probs=114.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCc----------ccccchh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTIT   81 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~   81 (217)
                      +..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+..++  ..+.||||||+          +.|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence            46799999999999999999999987654 44455566666666677777  46999999997          3343333


Q ss_pred             h-hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHH----HhCCeE
Q 027918           82 T-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALAD----EYGIKF  155 (217)
Q Consensus        82 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~  155 (217)
                      . .+++.+|++++|+|++++.+..+. .|+..+...   +.|+++|+||+|+.+.. ....++. +.+..    ..++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~---~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~l~~~~~~~~  325 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA---GKAVVIVVNKWDAVDKD-ESTMKEFEENIRDHFQFLDYAPI  325 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCEEEEEEECGGGSCCC-TTHHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc---CCcEEEEEECccCCCcc-hHHHHHHHHHHHHhcccCCCCCE
Confidence            2 477889999999999998877665 466666543   68999999999986532 2222222 22222    235799


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      +++||++|.|++++|+.+.+.+...
T Consensus       326 ~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          326 LFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEEecccCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999887654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.91  E-value=2.1e-23  Score=166.41  Aligned_cols=162  Identities=16%  Similarity=0.176  Sum_probs=122.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc---------chhhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~   83 (217)
                      ...++|+++|.+|+|||||+++|.+........+..+.......+...+  ..+.+|||||.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            4568999999999999999999998765433333444445555555555  689999999975432         11223


Q ss_pred             cccCCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918           84 YYRGAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (217)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+....   ..++...++...+++++++||+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~  318 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE---NIKRLEKFVKEKGLNPIKISAL  318 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH---HHHHHHHHHHHTTCCCEECBTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH---HHHHHHHHHHhcCCCeEEEeCC
Confidence            445799999999998876  67777888888877654 68999999999985421   1244555666778899999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (217)
                      +|+|+++++++|.+.+...
T Consensus       319 ~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          319 KGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TTBTHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHH
Confidence            9999999999999888654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=3.9e-25  Score=164.73  Aligned_cols=144  Identities=17%  Similarity=0.266  Sum_probs=105.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC-
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-   87 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   87 (217)
                      ....++|+|+|++|+|||||+++|.+..+..   .+.++.+.++         ....+.+|||||++.++..+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            3556899999999999999999999987654   2333333222         22689999999999999888888877 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHHHHhCC
Q 027918           88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDESKRAVP------TSKGQALADEYGI  153 (217)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~pvivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~  153 (217)
                         +|++|+|+|++ +++++..+..|+..+...    ...+.|+++|+||+|+.... ...      .+++..++...+.
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR-PPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC-CHHHHHHHHHHHHHHHHHHHhc
Confidence               89999999999 888888888888777654    33579999999999996532 222      3456667777778


Q ss_pred             eEEEEcCCCCCC
Q 027918          154 KFFETSAKTNLN  165 (217)
Q Consensus       154 ~~~~~Sa~~~~~  165 (217)
                      .++++|+++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.90  E-value=1.3e-23  Score=172.56  Aligned_cols=164  Identities=17%  Similarity=0.135  Sum_probs=118.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCeEEEEEEeeCCC----------cccccch
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG----------QERFRTI   80 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~   80 (217)
                      .+..++|+++|.+|+|||||+++|.+... .....++.+.+.....+..++  ..+.||||||          ++.|...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHH
Confidence            45679999999999999999999997652 334455555555555666777  4899999999          5666555


Q ss_pred             hh-hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-----CCe
Q 027918           81 TT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-----GIK  154 (217)
Q Consensus        81 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~  154 (217)
                      .. .+++.+|++++|+|++++-+ +....|...+..   .+.|+++|+||+|+.+. .....++..+.+...     +++
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  344 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP  344 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCC-CSSHHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCC-chHHHHHHHHHHHHhcccCCCCC
Confidence            44 37789999999999987543 223345555544   36899999999998652 334445555555544     479


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          155 FFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      ++++||++|.|++++|++|.+.+.....
T Consensus       345 ~~~~SA~~g~gv~~l~~~i~~~~~~~~~  372 (456)
T 4dcu_A          345 ILFMSALTKKRIHTLMPAIIKASENHSL  372 (456)
T ss_dssp             EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988766543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.90  E-value=2e-23  Score=162.49  Aligned_cols=153  Identities=16%  Similarity=0.110  Sum_probs=107.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCccc--------ccchhhhcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--------FRTITTAYY   85 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~   85 (217)
                      ..+|+|+|.+|+|||||+|+|++..+.. +..+.++.......+..++  .++.||||||...        +......++
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            4679999999999999999999987753 2333333333223334444  7899999999775        344556788


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-C-CeEEEEcCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-G-IKFFETSAKT  162 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~  162 (217)
                      +.+|++++|+|++++.+..  ..|+ ..+.... .+.|+++|+||+|+......     .......+ . .+++++||++
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iSA~~  156 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLSALD  156 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECCTTC
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEeCCC
Confidence            9999999999998764433  2343 4444432 36899999999998542110     22223322 2 5789999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|++++++.|.+.+
T Consensus       157 g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          157 ERQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999988765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.90  E-value=6.8e-24  Score=167.40  Aligned_cols=157  Identities=18%  Similarity=0.233  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhhcc---cCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTAYY---RGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~---~~~   88 (217)
                      .+|+|+|.+|||||||+++|.+........+..+.......+.+++. ..+.||||||...    +..+...++   ..+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            46899999999999999999987543222233333333444555532 4799999999643    333444444   459


Q ss_pred             cEEEEEEeCCC---hhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCC
Q 027918           89 MGILLVYDVTD---ESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAK  161 (217)
Q Consensus        89 d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~  161 (217)
                      +++|+|+|+++   +++++.+..|+..+..+..  .+.|+++|+||+|+...     .+..+.+...+.  .+++++||+
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~  312 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  312 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECC
Confidence            99999999998   7889999999999987653  36899999999998541     234566666666  689999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIK  178 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (217)
                      ++.|+++++++|.+.+.
T Consensus       313 tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          313 TREGLRELLFEVANQLE  329 (342)
T ss_dssp             CSSTTHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            99999999999998874

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.90  E-value=2.1e-23  Score=171.40  Aligned_cols=153  Identities=24%  Similarity=0.251  Sum_probs=116.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc-cccc--------hhhhcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE-RFRT--------ITTAYY   85 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~~   85 (217)
                      ++|+|+|.+|+|||||+|+|.+.... ....++++.++....+.+++  ..+.||||||.. .+..        ....++
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            89999999999999999999987643 44556666677667777887  679999999987 5432        234578


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      +.+|++++|+|++++.++++.. ++..+     .+.|+++|+||+|+...   ...+++..++. .+.+++++||++|.|
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~---~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK---INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC---CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc---cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            8999999999999887766543 22332     26899999999999642   23344444332 336899999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIKQR  180 (217)
Q Consensus       166 i~~l~~~l~~~~~~~  180 (217)
                      +++++++|.+.+...
T Consensus       392 i~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          392 LEKLEESIYRETQEI  406 (482)
T ss_dssp             HHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999976643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=1.9e-24  Score=174.75  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=116.4

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-------hh
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-------TT   82 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~   82 (217)
                      +....++|+|+|..|+|||||+++|++..+. ....++.+.+.....+...+. ..+.||||||+..+..+       +.
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence            3456789999999999999999999988763 344555566666677777654 38999999999877654       34


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      .++..+|++++|+|+...   .....|+..+...   +.|+++|+||+|+......   +..+.++..++++++++||++
T Consensus       109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAkt  179 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQ  179 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSCC
T ss_pred             HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECCC
Confidence            578899999999999333   3345577666665   6899999999998653322   556667777789999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~~  179 (217)
                      |.|++++|++|.+.+.+
T Consensus       180 g~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          180 KKGFDDIGKTISEILPG  196 (423)
T ss_dssp             TTSTTTHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHhhhh
Confidence            99999999999988743

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=5.9e-23  Score=167.97  Aligned_cols=152  Identities=22%  Similarity=0.314  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccchhhhcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYY   85 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~   85 (217)
                      .+|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||||...         +...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            48999999999999999999987654 34566666677777778887  5789999999664         234566788


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH-HHHHHHhCC-eEEEEcCC
Q 027918           86 RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG-QALADEYGI-KFFETSAK  161 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~  161 (217)
                      +.+|++++|+|+.++.+..+  +..|+   ...   +.|+++|+||+|+...   . .... .++. ..+. +++++||+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l---~~~---~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~  148 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFL---RKS---TVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAE  148 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHH---HHH---TCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHH---HHc---CCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEecc
Confidence            99999999999987654332  33333   222   6899999999997421   1 1222 3443 4565 78999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (217)
                      +|.|+++++++|.+.+.+.
T Consensus       149 ~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          149 HNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             TTBSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhcccc
Confidence            9999999999999888643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.89  E-value=3e-22  Score=159.43  Aligned_cols=162  Identities=17%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccchhhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   86 (217)
                      ..|+|+|++|+|||||+|+|.+..+.....+..+.+.....+.+++  ..+.+|||+|...         +...+ ..+.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~  256 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK  256 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence            3499999999999999999999876544445555566667778887  5789999999622         22222 3578


Q ss_pred             CCcEEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh---CCeEEEEcCC
Q 027918           87 GAMGILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY---GIKFFETSAK  161 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~  161 (217)
                      .+|++++|+|++++.  ..+.+..|...+......+.|+++|+||+|+...........+..++...   +.+++++||+
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~  336 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISAL  336 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTT
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            899999999998876  55666666666666544568999999999985422100112233344554   2478999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (217)
                      +|.|+++++++|.+.+...
T Consensus       337 ~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          337 KRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhccc
Confidence            9999999999998877554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.89  E-value=9.1e-23  Score=161.53  Aligned_cols=127  Identities=18%  Similarity=0.219  Sum_probs=102.5

Q ss_pred             EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCC
Q 027918           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDN  120 (217)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~  120 (217)
                      +....+.+++  +.+.+||++|++.++..|..++++++++|||||+++          ..++.....|+..+.... ..+
T Consensus       183 i~~~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~  260 (353)
T 1cip_A          183 IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD  260 (353)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence            3345556665  899999999999999999999999999999999998          456888888888776532 246


Q ss_pred             CcEEEEEeCCCCCCCC--------------CccChHHHHHHHH-----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          121 VNKVLVGNKADMDESK--------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       121 ~pvivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      .|+++|+||+|+....              .....+++..++.           ..++.+++|||+++.|++++|+++.+
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            9999999999984211              1356677777776           24578999999999999999999999


Q ss_pred             HHHHH
Q 027918          176 DIKQR  180 (217)
Q Consensus       176 ~~~~~  180 (217)
                      .+...
T Consensus       341 ~i~~~  345 (353)
T 1cip_A          341 VIIKN  345 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.89  E-value=1.4e-22  Score=165.48  Aligned_cols=160  Identities=16%  Similarity=0.080  Sum_probs=109.3

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEE
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIE   58 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   58 (217)
                      ......++|+++|.+++|||||+++|++...                               .....++.+.+.....+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3445679999999999999999999965311                               112224556666656666


Q ss_pred             ECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918           59 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  134 (217)
Q Consensus        59 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~  134 (217)
                      .++  ..+.||||||++.|...+...++.+|++++|+|+++...   ++...++...+......+.| +++|+||+|+..
T Consensus        92 ~~~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           92 TEK--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT  169 (439)
T ss_pred             cCC--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence            555  689999999999999988899999999999999988532   11111122222211122566 899999999853


Q ss_pred             CCC-----ccChHHHHHHHHHhC------CeEEEEcCCCCCCHHHHHH
Q 027918          135 SKR-----AVPTSKGQALADEYG------IKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus       135 ~~~-----~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ...     ....++...++...+      ++++++||++|.|++++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            211     112233444554444      5799999999999999765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.89  E-value=2e-22  Score=166.22  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=111.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCC-------CCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGS-------FTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   86 (217)
                      ..++|+++|..++|||||+++|.+..       ......++.+.+.....+..++  ..+.||||||++.|...+...+.
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence            46899999999999999999999866       2233344444454444555666  68999999999999888888999


Q ss_pred             CCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHh----CCeEEEE
Q 027918           87 GAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEY----GIKFFET  158 (217)
Q Consensus        87 ~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~----~~~~~~~  158 (217)
                      .+|++++|+|+++   +.+.+.+.    .+...   +.|+++|+||+|+.+.. .....+++..++...    +++++++
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v  168 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI  168 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence            9999999999987   34433332    23332   68889999999986421 111234455555544    5789999


Q ss_pred             cCCCCCCHHHHHHHHHHHHH
Q 027918          159 SAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       159 Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ||++|.|+++++++|.+.+.
T Consensus       169 SA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          169 SAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999998775

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=5.6e-22  Score=160.48  Aligned_cols=164  Identities=14%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEE---------EEE-------EE---CCeEEEEEEeeCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKI---------RTI-------EL---DGKRIKLQIWDTA   72 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~---------~~~-------~~---~~~~~~~~l~Dt~   72 (217)
                      ....++|+++|.+++|||||+++|.+........... .....         ...       ..   ......+.|||||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            4566899999999999999999999854332110000 00000         000       00   1122689999999


Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHh
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEY  151 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~  151 (217)
                      |++.|...+...+..+|++++|+|++++.+......|+..+....  ..|+++|+||+|+.+.... ...+++..+....
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999998766666777776666553  2589999999998652111 1112223333222


Q ss_pred             ---CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          152 ---GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       152 ---~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                         +++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence               478999999999999999999987653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=2.9e-22  Score=168.17  Aligned_cols=159  Identities=26%  Similarity=0.319  Sum_probs=111.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC--CCC-----C--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS--FTT-----S--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~--~~~-----~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   74 (217)
                      ++..+|+|+|..++|||||+++|+...  +..     .        ...+.++......+.+   ++..+.++||||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            456899999999999999999998621  110     0        0111222222222322   455689999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-  153 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (217)
                      ..|...+...++.+|++|+|+|++++........|...+..    ++|+++|+||+|+.+..   .......+...++. 
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~----~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~  154 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM----DLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID  154 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT----TCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC----CCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence            99999999999999999999999988777777777655532    68999999999986532   23334556666665 


Q ss_pred             --eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          154 --KFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                        .++++||++|.|+++++++|.+.+.
T Consensus       155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          155 ATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             CTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             cceEEEeecccCCCchhHHHHHhhcCC
Confidence              4899999999999999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.88  E-value=6.7e-22  Score=149.35  Aligned_cols=165  Identities=17%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc--ceeeeEEEEEEEECCeEEEEEEeeCCCcc-----------c
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT--TIGIDFKIRTIELDGKRIKLQIWDTAGQE-----------R   76 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~-----------~   76 (217)
                      ......++|+|+|.+|+|||||+|+|++..+.....+  +.+.......+.+++  ..+.||||||..           .
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence            3445679999999999999999999999877655444  455566666677777  589999999943           3


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhh--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC------hHHHHHHH
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESS--FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP------TSKGQALA  148 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~------~~~~~~~~  148 (217)
                      +...+..+++.+|++++|+|+++...  ...+..+...+....  ..|+++|+||+|+.... .+.      .+.++.++
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC-------------CHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHH
Confidence            44445556678999999999875433  222222222222211  35999999999975422 111      24677888


Q ss_pred             HHhCCeEEEEcCCCC-----CCHHHHHHHHHHHHHH
Q 027918          149 DEYGIKFFETSAKTN-----LNVEQVFFSIARDIKQ  179 (217)
Q Consensus       149 ~~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~  179 (217)
                      ...+..++.++...+     .++.++|+.+...+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            888888888887754     5788888887776644

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.88  E-value=6.4e-22  Score=165.86  Aligned_cols=159  Identities=20%  Similarity=0.295  Sum_probs=114.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCC-----C--------cccceeeeEEEEEEEE---CCeEEEEEEeeCCCc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----S--------FITTIGIDFKIRTIEL---DGKRIKLQIWDTAGQ   74 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~-----~--------~~~~~~~~~~~~~~~~---~~~~~~~~l~Dt~G~   74 (217)
                      ++..+|+|+|..++|||||+++|+..  .+..     .        ...+.++......+.+   ++..+.++||||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            56789999999999999999999762  1110     0        0111111111122222   455689999999999


Q ss_pred             ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-
Q 027918           75 ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-  153 (217)
Q Consensus        75 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-  153 (217)
                      ..|...+...++.+|++|+|+|++++........|.....    .++|+++|+||+|+....   ......++...+++ 
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~  156 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD  156 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence            9999988899999999999999999877777777765543    268999999999986532   22334455555565 


Q ss_pred             --eEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          154 --KFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       154 --~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                        .++++||++|.|+++++++|.+.+.
T Consensus       157 ~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          157 PEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cccEEEEEeecCCCchHHHHHHHHhcc
Confidence              4899999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.88  E-value=1.3e-21  Score=158.62  Aligned_cols=160  Identities=16%  Similarity=0.159  Sum_probs=103.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceee--eEEEEEEEE-------------C--C----eEEEEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGI--DFKIRTIEL-------------D--G----KRIKLQI   68 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~l   68 (217)
                      ...++|+++|..++|||||+++|.+..   +.....+..+.  .+....+..             +  +    ....+.|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            356999999999999999999998543   22333342233  232222211             1  1    1368999


Q ss_pred             eeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHH
Q 027918           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSK  143 (217)
Q Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~  143 (217)
                      |||||++.|...+...+..+|++|+|+|++++    ++.+.+..    +....  ..|+++|+||+|+.+.... ...++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHHHHH
Confidence            99999999988888888899999999999853    44444332    22221  2589999999999654322 23455


Q ss_pred             HHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          144 GQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       144 ~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +..++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666654   2578999999999999999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=8.2e-23  Score=167.14  Aligned_cols=153  Identities=20%  Similarity=0.209  Sum_probs=104.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchh--------hhc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT--------TAY   84 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~   84 (217)
                      ..++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.||||||...+...+        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3479999999999999999999986543 34445555556555667777  678999999986654332        336


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL  164 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (217)
                      +..+|++++|+|++++.+... ..|+..+.     ..|+++|+||+|+..... ..  ..+.+.  ...+++++||++|.
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~-~~--~~~~~~--~~~~~i~iSAktg~  369 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQL-IT--SLEYPE--NITQIVHTAAAQKQ  369 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGG-ST--TCCCCT--TCCCEEEEBTTTTB
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchh-hH--HHHHhc--cCCcEEEEECCCCC
Confidence            789999999999998766543 34444442     369999999999865321 11  111111  34689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIKQ  179 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~  179 (217)
                      |+++++++|.+.+..
T Consensus       370 Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          370 GIDSLETAILEIVQT  384 (462)
T ss_dssp             SHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999987753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=4.3e-22  Score=152.22  Aligned_cols=163  Identities=13%  Similarity=0.152  Sum_probs=108.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC-CCCCcccc-eeeeEEEEEEEECCeEEEEEEeeCCCcccccch---------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS-FTTSFITT-IGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI---------   80 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------   80 (217)
                      ....++|+|+|.+|+|||||+++|++.. +.....++ .+.......+..++  ..+.||||||+..+...         
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            3456899999999999999999999876 33333333 44455555566676  68999999998665322         


Q ss_pred             --hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC--CCcEEEEEe-CCCCCCCCCccCh-------HHHHHHH
Q 027918           81 --TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD--NVNKVLVGN-KADMDESKRAVPT-------SKGQALA  148 (217)
Q Consensus        81 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~--~~pvivv~n-K~Dl~~~~~~~~~-------~~~~~~~  148 (217)
                        ...+++.+|++++|+|+++....  ...++..+......  ..|+++|+| |+|+...  ....       ..+..+.
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~  172 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLV  172 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHH
Confidence              22367889999999999862221  11222333333221  346666666 9998642  1111       2344455


Q ss_pred             HHhCCe---E--EEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          149 DEYGIK---F--FETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       149 ~~~~~~---~--~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ...+..   +  +++||++|.|++++|++|.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            655532   2  7899999999999999999988654

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.87  E-value=5.8e-22  Score=157.44  Aligned_cols=127  Identities=19%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             EEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHh-cCCCC
Q 027918           53 KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQH-ASDNV  121 (217)
Q Consensus        53 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~-~~~~~  121 (217)
                      ....+.+++  +.+.+|||+|++.++..|..++++++++|||||+++          ..++.....|+..+... ...+.
T Consensus       192 ~~~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~  269 (362)
T 1zcb_A          192 HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNV  269 (362)
T ss_dssp             EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTS
T ss_pred             EEEEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCC
Confidence            334555665  899999999999999999999999999999999999          67888888888888654 23469


Q ss_pred             cEEEEEeCCCCCCCC---------------CccChHHHHHHHH-----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          122 NKVLVGNKADMDESK---------------RAVPTSKGQALAD-----------EYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       122 pvivv~nK~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |+|+|+||+|+....               .....+++..++.           ...+.+++|||+++.|++++|+++.+
T Consensus       270 piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          270 SIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             EEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            999999999984211               1245666666652           34578999999999999999999999


Q ss_pred             HHHHHh
Q 027918          176 DIKQRL  181 (217)
Q Consensus       176 ~~~~~~  181 (217)
                      .+....
T Consensus       350 ~i~~~~  355 (362)
T 1zcb_A          350 TILHDN  355 (362)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=8.3e-22  Score=159.87  Aligned_cols=164  Identities=16%  Similarity=0.176  Sum_probs=111.3

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcCC---CCCCcccceeee--EEEEEEEE-------------C--C----eEE
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDGS---FTTSFITTIGID--FKIRTIEL-------------D--G----KRI   64 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~~---~~~~~~~~~~~~--~~~~~~~~-------------~--~----~~~   64 (217)
                      +......++|+++|..++|||||+++|.+..   +.....+..+++  +....+..             .  +    ...
T Consensus         4 ~~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   83 (410)
T 1kk1_A            4 RKSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVR   83 (410)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEE
T ss_pred             cccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCccccccc
Confidence            3445677999999999999999999998543   233333433332  22222211             0  1    126


Q ss_pred             EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-cc
Q 027918           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE----SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-AV  139 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-~~  139 (217)
                      .+.||||||++.|.......+..+|++|+|+|+++.    ++.+.+..    +....  ..|+++|+||+|+.+... ..
T Consensus        84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHH
Confidence            899999999999888777788899999999999853    34444332    22222  257999999999865221 11


Q ss_pred             ChHHHHHHHHH---hCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          140 PTSKGQALADE---YGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       140 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ..+++..++..   .+++++++||++|.|+++++++|.+.+.
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            22344455443   3579999999999999999999887653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.87  E-value=3e-24  Score=177.82  Aligned_cols=160  Identities=18%  Similarity=0.151  Sum_probs=116.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..++|+|+|.+++|||||+++|.+..+.....++.+.++....+..++. ..++||||||++.|..++..+++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            4579999999999999999999886655445555555554444444221 379999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHh--CCeEEEEcCCCCCCHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEY--GIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~  168 (217)
                      |+|+++.........|    ......+.|+++|+||+|+.+............+   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~e~l----~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTVESI----QHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHHHHH----HHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHHHHH----HHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986554433322    2222347899999999998654333333333222   1112  25899999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          169 VFFSIARDIK  178 (217)
Q Consensus       169 l~~~l~~~~~  178 (217)
                      ++++|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999887653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.87  E-value=7.4e-22  Score=154.23  Aligned_cols=127  Identities=19%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027918           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN  120 (217)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~  120 (217)
                      +....+..++  +.+.+||++|++.++..|.+++++++++|+|||++          +..++.....|+..+.... ..+
T Consensus       157 i~~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~  234 (327)
T 3ohm_A          157 IIEYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN  234 (327)
T ss_dssp             EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT
T ss_pred             EEEEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC
Confidence            4445566666  89999999999999999999999999999999765          5566777777777775432 247


Q ss_pred             CcEEEEEeCCCCCCCC---------------CccChHHHHHHHH----------HhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          121 VNKVLVGNKADMDESK---------------RAVPTSKGQALAD----------EYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       121 ~pvivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      .|+++++||+|+....               ...+.+++..|+.          ..++.+++|||+++.|++++|..+.+
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            9999999999984311               1356677777743          34577899999999999999999999


Q ss_pred             HHHHH
Q 027918          176 DIKQR  180 (217)
Q Consensus       176 ~~~~~  180 (217)
                      .+...
T Consensus       315 ~Il~~  319 (327)
T 3ohm_A          315 TILQL  319 (327)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=2.5e-21  Score=158.30  Aligned_cols=161  Identities=21%  Similarity=0.153  Sum_probs=107.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-----------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----------   80 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------   80 (217)
                      +..++|+|+|++|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHHH
Confidence            45699999999999999999999987642 33344555555556677787  47899999997433221           


Q ss_pred             -hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH-HHHH----HhCCe
Q 027918           81 -TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ-ALAD----EYGIK  154 (217)
Q Consensus        81 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~  154 (217)
                       ...++..+|++++++|+.++.+..+. .+...+..   .+.|+++|+||+|+.+. .....++.. .+..    ..+.+
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~  330 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSP  330 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCc
Confidence             12356789999999999876655442 23333333   26899999999998652 222222222 2222    23478


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          155 FFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ++++||++|.|++++|+.+.+.+...
T Consensus       331 ~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          331 LIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999998877654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=9.9e-23  Score=166.48  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=100.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--------cccchhhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--------RFRTITTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~   86 (217)
                      ++|+|+|.+|+|||||+|+|.+.... ....++.+.+.....+.+++  ..+.||||||..        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999987654 33345555555555555555  579999999985        56667778899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCCCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTNLN  165 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~  165 (217)
                      .+|++++|+|+.++.+..+  .|+..+.+  ..+.|+++|+||+|+......     ..++. ..+. .++++||++|.|
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~-----~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN-----IYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C-----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh-----HHHHH-HcCCCCeEEEeCcCCCC
Confidence            9999999999988765443  23322222  236899999999998542211     11122 3454 789999999999


Q ss_pred             HHHHHHHHHHHHH
Q 027918          166 VEQVFFSIARDIK  178 (217)
Q Consensus       166 i~~l~~~l~~~~~  178 (217)
                      +++++++|.+.+.
T Consensus       152 v~~L~~~i~~~l~  164 (436)
T 2hjg_A          152 LGDLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHHHTGG
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999988764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.87  E-value=5.3e-22  Score=157.08  Aligned_cols=120  Identities=14%  Similarity=0.215  Sum_probs=93.0

Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKA  130 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~  130 (217)
                      ..+.+.+|||+|++.++..|..++++++++|+|||++          +..+++....|+..+.... ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7788999888888886542 2468999999999


Q ss_pred             CCCCCCC--------------------ccChHHHHHHHHH----------------hCCeEEEEcCCCCCCHHHHHHHHH
Q 027918          131 DMDESKR--------------------AVPTSKGQALADE----------------YGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       131 Dl~~~~~--------------------~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      |+.....                    ....+++..++..                ..+.+++|||+++.|++++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843110                    0113555555432                123568999999999999999999


Q ss_pred             HHHHHHh
Q 027918          175 RDIKQRL  181 (217)
Q Consensus       175 ~~~~~~~  181 (217)
                      +.+....
T Consensus       341 ~~I~~~~  347 (354)
T 2xtz_A          341 ETLRRRN  347 (354)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9886543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.87  E-value=2e-21  Score=151.35  Aligned_cols=156  Identities=18%  Similarity=0.140  Sum_probs=107.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcc---------cccchhhhc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE---------RFRTITTAY   84 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---------~~~~~~~~~   84 (217)
                      ..+|+|+|.+|+|||||+|+|++..+.. +..+..+.......+..++  ..+.+|||||..         .+......+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            3589999999999999999999976542 2222222222223344455  689999999986         233445667


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCC-eEEEEcCCCC
Q 027918           85 YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGI-KFFETSAKTN  163 (217)
Q Consensus        85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~  163 (217)
                      ++.+|++++|+|+++ -  .....|+.....  ..+.|+++|+||+|+.. ......+.+..+....++ .++++||++|
T Consensus        86 l~~~D~vl~Vvd~~~-~--~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-W--TPDDEMVLNKLR--EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             CCCEEEEEEEEETTC-C--CHHHHHHHHHHH--SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HhcCCEEEEEEeCCC-C--CHHHHHHHHHHH--hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            889999999999976 2  222233322221  23689999999999854 122233445555555665 7999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 027918          164 LNVEQVFFSIARDIK  178 (217)
Q Consensus       164 ~~i~~l~~~l~~~~~  178 (217)
                      .|++++++.|...+.
T Consensus       160 ~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          160 LNVDTIAAIVRKHLP  174 (301)
T ss_dssp             TTHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999887653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=2.1e-22  Score=155.08  Aligned_cols=160  Identities=18%  Similarity=0.220  Sum_probs=92.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCC-Cc-------ccceeeeEEEEEEEECCeEEEEEEeeCCCccc-------cc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQER-------FR   78 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~   78 (217)
                      ..++|+|+|.+|+|||||+|+|++..... .+       .++.+.+.....+..++..+.+.||||||...       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            46999999999999999999988765443 22       45556666656665566667999999999732       22


Q ss_pred             chh-------hhccc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC-
Q 027918           79 TIT-------TAYYR-------------GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR-  137 (217)
Q Consensus        79 ~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~-  137 (217)
                      .+.       ..++.             .+|+++++++.........-..++..+..    +.|+++|+||+|+..... 
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHH
Confidence            221       22222             37789999877652211222234444433    689999999999743111 


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ....+.+.......+++++.+|+.++.|+++++++|.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1112334455556789999999999999999999887755

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.4e-21  Score=158.21  Aligned_cols=155  Identities=19%  Similarity=0.133  Sum_probs=105.9

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCC---CCC---------cc---------------------cceeeeEEEEEE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSF---TTS---------FI---------------------TTIGIDFKIRTI   57 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~---~~~---------~~---------------------~~~~~~~~~~~~   57 (217)
                      .....++|+++|.+++|||||+++|++...   ...         ..                     .+.+++.....+
T Consensus        20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~   99 (434)
T 1zun_B           20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   99 (434)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence            335679999999999999999999986431   100         00                     112223233333


Q ss_pred             EECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           58 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        58 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..++  ..+.||||||++.|...+..++..+|++|+|+|++++... ....++..+....  ..|+++|+||+|+.+...
T Consensus       100 ~~~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~  174 (434)
T 1zun_B          100 STAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDE  174 (434)
T ss_dssp             ECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCH
T ss_pred             ecCC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccH
Confidence            4444  6899999999999988888889999999999999886432 2333444443331  236899999999865211


Q ss_pred             c---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHH
Q 027918          138 A---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~  170 (217)
                      .   ...++...++...+     ++++++||++|.|+++++
T Consensus       175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence            1   12344556666666     689999999999999854

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=5.5e-21  Score=157.94  Aligned_cols=151  Identities=15%  Similarity=0.076  Sum_probs=99.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-------------------------------CCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-------------------------------TSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...+||+++|.+++|||||+++|++....                               ....++.+.+.....+...+
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            35699999999999999999999764111                               11122334444444444444


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNN------IRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                        ..+.||||||++.|...+..+++.+|++|+|+|++++.+...      ....+..+... . ..|+|+|+||+|+.+.
T Consensus       111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~-~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G-IHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T-CCCEEEEEECGGGGTT
T ss_pred             --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C-CCcEEEEEECcCcccc
Confidence              689999999999999999999999999999999998654321      12222222222 1 2569999999998652


Q ss_pred             CCccCh----HHHHHHHHHh-----CCeEEEEcCCCCCCHHH
Q 027918          136 KRAVPT----SKGQALADEY-----GIKFFETSAKTNLNVEQ  168 (217)
Q Consensus       136 ~~~~~~----~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~  168 (217)
                       .....    +++..+....     +++++++||++|.|+++
T Consensus       187 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          187 -SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             -hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             12222    2233333333     36899999999999985

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=2.6e-21  Score=160.76  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=86.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC------------------CCC----CcccceeeeEEEEEEEECCeEEEEEEee
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS------------------FTT----SFITTIGIDFKIRTIELDGKRIKLQIWD   70 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~------------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D   70 (217)
                      +...+|+|+|.+|+|||||+++|+...                  ...    ....+.+.......+...+  ..++|||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liD   88 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLD   88 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEEC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEE
Confidence            456899999999999999999996211                  000    0012233334445555666  7899999


Q ss_pred             CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      |||+..|...+..+++.+|++|+|+|++++........|. .+..   .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999876666555543 3333   2689999999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.2e-21  Score=143.10  Aligned_cols=114  Identities=18%  Similarity=0.299  Sum_probs=87.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccC-
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG-   87 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~-   87 (217)
                      ....++|+|+|++|+|||||+++|.+..+..   ...++.+.+       +.  .+.+.+|||||+..+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YD--GSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CC--CTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ec--CCeEEEEECCCCchHHHHHHHHHHhh
Confidence            3567899999999999999999999887544   222222211       12  2689999999999988888777766 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCC
Q 027918           88 ---AMGILLVYDVT-DESSFNNIRNWIRNIEQH----ASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        88 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~----~~~~~pvivv~nK~Dl~~  134 (217)
                         +|++++|||++ +.+++..+..|+..+...    ...+.|+++|+||+|+..
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~  170 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT  170 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence               89999999999 888999888888777554    234799999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=2.5e-22  Score=163.98  Aligned_cols=156  Identities=17%  Similarity=0.185  Sum_probs=104.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCCc-----------------------------ccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTSF-----------------------------ITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|.+++|||||+++|++.  .+....                             ..+.+++.....+...+
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            45689999999999999999999864  232110                             12233344333444444


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc----CCC-CcEEEEEeCCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDN-VNKVLVGNKADMDESK  136 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~-~pvivv~nK~Dl~~~~  136 (217)
                        ..+.||||||++.|...+..+++.+|++|+|+|+++ .+++....|......+.    ..+ .|+++|+||+|+.+..
T Consensus        84 --~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           84 --YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             --CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             --eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence              689999999999999989999999999999999998 56664433222221111    113 4689999999986521


Q ss_pred             C-----ccChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHHHH
Q 027918          137 R-----AVPTSKGQALADEYG-----IKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus       137 ~-----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  171 (217)
                      .     ....+++..++...+     ++++++||++|.|+.++++
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1     122345666666665     6899999999999986543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=3.9e-21  Score=155.21  Aligned_cols=158  Identities=18%  Similarity=0.134  Sum_probs=107.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC-------CCCC---------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG-------SFTT---------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      ..++|+++|.+++|||||+++|.+.       .+..         ......+++.....+..++  ..+.||||||++.|
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~~~iiDtpG~~~f   79 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC--eEEEEEECCChHHH
Confidence            3589999999999999999999873       1110         0122233333333333333  68999999999999


Q ss_pred             cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC--
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG--  152 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~--  152 (217)
                      .......++.+|++|+|+|+++.........| ..+...   ++| +++|+||+|+.++..  ....+++..++...+  
T Consensus        80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88888899999999999999985443333333 333332   578 689999999864211  112245556666655  


Q ss_pred             ---CeEEEEcCCCCCC----------HHHHHHHHHHHH
Q 027918          153 ---IKFFETSAKTNLN----------VEQVFFSIARDI  177 (217)
Q Consensus       153 ---~~~~~~Sa~~~~~----------i~~l~~~l~~~~  177 (217)
                         ++++++||++|.|          +.++++.|.+.+
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence               5899999998764          777777776654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.85  E-value=2.3e-21  Score=157.04  Aligned_cols=147  Identities=19%  Similarity=0.137  Sum_probs=103.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--------CCCCC---------cccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--------SFTTS---------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ...++|+++|.+++|||||+++|.+.        .+...         ...+.+.+.....+..++  ..+.||||||++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~~~iiDtpG~~   86 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHA   86 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC--eEEEEEECCChH
Confidence            45689999999999999999999873        11111         122333344333344343  689999999999


Q ss_pred             cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC--ccChHHHHHHHHHhC
Q 027918           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR--AVPTSKGQALADEYG  152 (217)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  152 (217)
                      .|.......++.+|++|+|+|++++... ....|+..+...   +.| +++|+||+|+.++..  ....+++..++...+
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            9988888899999999999999886543 334555555443   577 889999999864211  111234555666654


Q ss_pred             -----CeEEEEcCCCCCC
Q 027918          153 -----IKFFETSAKTNLN  165 (217)
Q Consensus       153 -----~~~~~~Sa~~~~~  165 (217)
                           ++++++||++|.|
T Consensus       163 ~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             SCTTTSCEEECCHHHHHH
T ss_pred             ccccCCCEEEccHHHhhh
Confidence                 6899999999876

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.85  E-value=6.4e-22  Score=157.73  Aligned_cols=164  Identities=22%  Similarity=0.301  Sum_probs=88.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc--------ccceeeeEEEEEEEECCeEEEEEEeeCCCc-------cc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   76 (217)
                      ...++|+|+|++|+|||||+++|++.... ..+        .++.+.......+..++..+.+++|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            34589999999999999999998765332 222        134444444444445666679999999998       55


Q ss_pred             ccchhh-------hcccCCc-----------EEEEEEeCCC-hhhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           77 FRTITT-------AYYRGAM-----------GILLVYDVTD-ESSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        77 ~~~~~~-------~~~~~~d-----------~~i~v~d~~~-~~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      +..++.       .+++.++           +.+++|++++ ..++..+. .|+..+    ..+.|+|+|+||+|+... 
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~-  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL-  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH-
Confidence            655554       4444332           2234444443 33343333 243333    246899999999998642 


Q ss_pred             CccCh--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          137 RAVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       137 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                      ..+..  +.+..++..++++++++||+++.+ ++.|.++.+.+....+
T Consensus       190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            22222  456666677789999999999999 8889888888876554

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=5.4e-23  Score=169.01  Aligned_cols=156  Identities=20%  Similarity=0.242  Sum_probs=107.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.++|+++|.+++|||||+++|.+..+.....++.+.+.....+..++  ..++||||||++.|..++...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457999999999999999999987655443333333333333344455  478999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChH--HHHHHHHHhC--CeEEEEcCCCCCCHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTS--KGQALADEYG--IKFFETSAKTNLNVEQ  168 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~  168 (217)
                      |+|++++........ +..+..   .+.|+++++||+|+.+.... +..+  ....++..++  ++++++||++|.|+++
T Consensus        81 VVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           81 VVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            999988422221222 222222   36899999999998643211 1110  0001112222  6899999999999999


Q ss_pred             HHHHHHH
Q 027918          169 VFFSIAR  175 (217)
Q Consensus       169 l~~~l~~  175 (217)
                      +|++|..
T Consensus       157 Lle~I~~  163 (501)
T 1zo1_I          157 LLDAILL  163 (501)
T ss_dssp             HHHHTTT
T ss_pred             hhhhhhh
Confidence            9999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.85  E-value=4.3e-21  Score=153.23  Aligned_cols=147  Identities=10%  Similarity=0.073  Sum_probs=108.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      +|+++|.+++|||||+++|.        ....+++.....+..++  ..+.||||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999998        23333444444444444  579999999999998877788899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCCCccC--hHHHHHHHHHhC---CeEEE--EcCCC---CC
Q 027918           97 VTDESSFNNIRNWIRNIEQHASDNVNK-VLVGN-KADMDESKRAVP--TSKGQALADEYG---IKFFE--TSAKT---NL  164 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--~Sa~~---~~  164 (217)
                       +. ........++..+...   +.|. ++++| |+|+ + .....  .++++.++...+   +++++  +||++   +.
T Consensus        93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~-~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~  165 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-H-MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE  165 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C-HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred             -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C-HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence             53 3344455565555544   5677 88899 9998 4 21111  134455554433   68999  99999   99


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIKQR  180 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (217)
                      |++++++.|.+.+...
T Consensus       166 gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          166 GVDELKARINEVAEKI  181 (370)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhcccc
Confidence            9999999999887643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.84  E-value=3.8e-20  Score=145.09  Aligned_cols=126  Identities=16%  Similarity=0.201  Sum_probs=98.0

Q ss_pred             EEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHHhc-CCC
Q 027918           52 FKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVT----------DESSFNNIRNWIRNIEQHA-SDN  120 (217)
Q Consensus        52 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~~-~~~  120 (217)
                      +....+.+++  +.+.+||++|++.++..|..++++++++|||||++          +..++.+...|+..+.... ..+
T Consensus       151 i~~~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~  228 (340)
T 4fid_A          151 IHEYDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG  228 (340)
T ss_dssp             CEEEEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT
T ss_pred             eEEEEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC
Confidence            3344455555  89999999999999999999999999999999998          6778888888887776543 357


Q ss_pred             CcEEEEEeCCCCCCC--------------CCccChHHHHHHHH-Hh--------------------------CCeEEEEc
Q 027918          121 VNKVLVGNKADMDES--------------KRAVPTSKGQALAD-EY--------------------------GIKFFETS  159 (217)
Q Consensus       121 ~pvivv~nK~Dl~~~--------------~~~~~~~~~~~~~~-~~--------------------------~~~~~~~S  159 (217)
                      .|+++|+||+|+...              ......+++..++. ..                          .+.++++|
T Consensus       229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts  308 (340)
T 4fid_A          229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN  308 (340)
T ss_dssp             SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred             CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence            999999999997431              01123445544432 22                          36789999


Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~~  179 (217)
                      |+++.+++.+|..+.+.+..
T Consensus       309 A~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          309 ATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             eeCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999887

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.84  E-value=5.2e-22  Score=163.27  Aligned_cols=156  Identities=17%  Similarity=0.103  Sum_probs=92.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCC-----------------------------CcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTT-----------------------------SFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|..++|||||+++|+..  .+..                             ....+.+++.....+..++
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            55689999999999999999999752  1110                             0012223333333444454


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKR  137 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~  137 (217)
                        ..+.||||||++.|...+...+..+|++|+|+|+++..   +|+...+|...+......++| +++|+||+|+.....
T Consensus       121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence              68999999999999988888899999999999999863   232222233333222223577 999999999854211


Q ss_pred             -----ccChHHHHHHHHHh-------CCeEEEEcCCCCCCHHHHH
Q 027918          138 -----AVPTSKGQALADEY-------GIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       138 -----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~  170 (217)
                           ....++...++...       +++++++||++|.|+++++
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 11223455666555       3679999999999998765

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=2.4e-20  Score=149.33  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=98.3

Q ss_pred             EEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHHhc-CCCCcE
Q 027918           55 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTD----------ESSFNNIRNWIRNIEQHA-SDNVNK  123 (217)
Q Consensus        55 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~~-~~~~pv  123 (217)
                      ..+.+++  +.+.||||+|++.++..|..++++++++|||||+++          ..++.....|+..+.... ..+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            4455665  899999999999999999999999999999999999          889999999999887653 357899


Q ss_pred             EEEEeCCCCCCCCC--cc---------------------------ChHHHHHHH-----HH--------hCCeEEEEcCC
Q 027918          124 VLVGNKADMDESKR--AV---------------------------PTSKGQALA-----DE--------YGIKFFETSAK  161 (217)
Q Consensus       124 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~  161 (217)
                      +||+||+|+.....  ..                           ..+++..|+     ..        ..+.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999843110  01                           134455553     22        24567899999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~~  180 (217)
                      ++.||+++|.++.+.+...
T Consensus       368 d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHH
Confidence            9999999999998887654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.84  E-value=2.4e-20  Score=156.71  Aligned_cols=159  Identities=16%  Similarity=0.105  Sum_probs=105.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeee--EEEEEEEE---------CC-----eEEEEEEeeCCCccccc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--FKIRTIEL---------DG-----KRIKLQIWDTAGQERFR   78 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~--~~~~~~~~---------~~-----~~~~~~l~Dt~G~~~~~   78 (217)
                      .++|+|+|.+++|||||+++|.+..+........+.+  ........         ++     ....++||||||++.|.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~   84 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT   84 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHH
Confidence            4799999999999999999998754432111111111  11111100         00     01259999999999999


Q ss_pred             chhhhcccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc------------Ch--
Q 027918           79 TITTAYYRGAMGILLVYDVTD---ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV------------PT--  141 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~------------~~--  141 (217)
                      .++...++.+|++|+|+|+++   +.+++.+..    +..   .+.|+++|+||+|+.......            ..  
T Consensus        85 ~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           85 TLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            999999999999999999998   555544432    222   268999999999985421110            00  


Q ss_pred             -H-------HHHHHHHHh---------------CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          142 -S-------KGQALADEY---------------GIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       142 -~-------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                       +       +......+.               .++++++||++|.|+++++++|...+...
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence             0       011111111               13899999999999999999999877643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=6.7e-21  Score=160.88  Aligned_cols=155  Identities=16%  Similarity=0.108  Sum_probs=103.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-------------------------------ccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-------------------------------ITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|.+|+|||||+++|++.......                               .++.+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45689999999999999999999875332111                               12334444444455554


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhh---HHHHHHHHHHHHHhcCCC-CcEEEEEeCCCCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESS---FNNIRNWIRNIEQHASDN-VNKVLVGNKADMDESKR  137 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~-~pvivv~nK~Dl~~~~~  137 (217)
                        ..+.||||||++.|...+..+++.+|++|+|+|++++..   +.....+...+......+ .|+|+|+||+|+.+...
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence              689999999999999989999999999999999987421   101112222222211223 45999999999865211


Q ss_pred             c---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918          138 A---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV  169 (217)
Q Consensus       138 ~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  169 (217)
                      .   ...+....++...+     ++++++||++|.|+.++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1   11233344444443     58999999999999876

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=2.3e-21  Score=159.23  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=99.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCC--------cccccchhhhcc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG--------QERFRTITTAYY   85 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~   85 (217)
                      .++|+|+|.+|+|||||+|+|.+..+. ....++.+.+.....+...+  ..+.+|||||        ++.+...+..++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            579999999999999999999987654 23344444444444444444  6899999999        667777788899


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNL  164 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~  164 (217)
                      +.+|++++|+|..+.-+..  ..|+..+.+.  .+.|+++|+||+|+....     ....++. ..+ ..++++||++|.
T Consensus       101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~~--~~~pvilV~NK~D~~~~~-----~~~~e~~-~lg~~~~~~iSA~~g~  170 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAA--DEEVAKILYR--TKKPVVLAVNKLDNTEMR-----ANIYDFY-SLGFGEPYPISGTHGL  170 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHH--HHHHHHHHTT--CCSCEEEEEECC--------------CCSG-GGSSSSEEECCTTTCT
T ss_pred             hhCCEEEEEEeCCCCCChH--HHHHHHHHHH--cCCCEEEEEECccchhhh-----hhHHHHH-HcCCCceEEeeccccc
Confidence            9999999999987643322  2333233222  378999999999985421     1111121 223 356799999999


Q ss_pred             CHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIK  178 (217)
Q Consensus       165 ~i~~l~~~l~~~~~  178 (217)
                      |+.++++.+.+.+.
T Consensus       171 gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          171 GLGDLLDAVAEHFK  184 (456)
T ss_dssp             THHHHHHHHHTTGG
T ss_pred             chHHHHHHHHhhcc
Confidence            99999999887653

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=7.4e-22  Score=161.96  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=103.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CCCCC-----------------------------cccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SFTTS-----------------------------FITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|.+++|||||+++|++.  .+...                             ...+.+++.....+..++
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            35689999999999999999999864  22110                             012333333334444444


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SFN---NIRNWIRNIEQHASDNVN-KVLVGNKADMDE  134 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~  134 (217)
                        ..+.||||||++.|.......+..+|++|+|+|+++..   +|+   ....++..+...   +.| +++|+||+|+.+
T Consensus        85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred             --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence              68999999999999998889999999999999998753   221   222222222222   455 899999999863


Q ss_pred             CCCc---cChHHHHHHHHHhC-----CeEEEEcCCCCCCHHHH
Q 027918          135 SKRA---VPTSKGQALADEYG-----IKFFETSAKTNLNVEQV  169 (217)
Q Consensus       135 ~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  169 (217)
                      ....   ...+++..++...+     ++++++||++|.|+.++
T Consensus       160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1111   12334555666655     68999999999998754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.83  E-value=9e-22  Score=165.72  Aligned_cols=152  Identities=20%  Similarity=0.178  Sum_probs=82.4

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCC-------------------------------CCCCcccceeeeEEEEEEEE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGS-------------------------------FTTSFITTIGIDFKIRTIEL   59 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   59 (217)
                      .....++|+|+|.+++|||||+++|++..                               ......++.+.+.....+..
T Consensus       173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~  252 (592)
T 3mca_A          173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES  252 (592)
T ss_dssp             CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence            34567899999999999999999996421                               01111334444444444444


Q ss_pred             CCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 027918           60 DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES---SF---NNIRNWIRNIEQHASDNVN-KVLVGNKADM  132 (217)
Q Consensus        60 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl  132 (217)
                      ++  ..+.||||||+..|.......+..+|++|+|+|++++.   .+   ......+..+...   +.| +|+|+||+|+
T Consensus       253 ~~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl  327 (592)
T 3mca_A          253 DK--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDL  327 (592)
T ss_dssp             --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGG
T ss_pred             CC--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccc
Confidence            43  68999999999999988888999999999999998532   11   1111122222222   455 8999999998


Q ss_pred             CCCCCcc---ChHHHHHHH-HHhC-----CeEEEEcCCCCCCHH
Q 027918          133 DESKRAV---PTSKGQALA-DEYG-----IKFFETSAKTNLNVE  167 (217)
Q Consensus       133 ~~~~~~~---~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~  167 (217)
                      .+.....   ...++..+. ...+     ++++++||++|.|+.
T Consensus       328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            6421111   122333343 3334     379999999999998

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.82  E-value=1.7e-20  Score=146.02  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=102.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC------cccce----------------------eee------------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTI----------------------GID------------   51 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~------~~~~~----------------------~~~------------   51 (217)
                      ....++|+|+|.+|+|||||+|+|++..+.+.      ..++.                      +.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            34568999999999999999999999876421      11210                      000            


Q ss_pred             -----------EEEEEEEECCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEEE-EEEeCCChhhHHHH
Q 027918           52 -----------FKIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGIL-LVYDVTDESSFNNI  106 (217)
Q Consensus        52 -----------~~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~  106 (217)
                                 .....+...+ ...+.||||||..             .+...+..+++.++.++ +|+|+++..+..+.
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~  181 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  181 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred             hcccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence                       0000111110 1579999999964             34455667888888776 69999875443333


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH--hC-CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          107 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--YG-IKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       107 ~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      ..|+..+.   ..+.|+++|+||+|+.+... ...+.++.....  .+ .+++++||++|.|+++++++|.+...
T Consensus       182 ~~~~~~~~---~~~~~~i~V~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          182 LKIAKEVD---PQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             HHHHHHHC---TTCSSEEEEEECGGGSCTTC-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHhC---CCCCeEEEEEEccccCCCCc-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            33444332   34689999999999865322 122222110001  12 36789999999999999999887443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=5.3e-19  Score=135.20  Aligned_cols=120  Identities=18%  Similarity=0.169  Sum_probs=87.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc-----
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR-----   86 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-----   86 (217)
                      ...++|+|+|.+|+|||||+++|++.... ....++.+.......+..++  ..+.||||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35699999999999999999999987753 23334444555556666777  68999999999877655444333     


Q ss_pred             ----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918           87 ----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  134 (217)
Q Consensus        87 ----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~  134 (217)
                          .+|++++|++++..........|+..+......+  .|+++|+||+|+..
T Consensus       112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence                7899999999876542223345777776655433  48999999999854

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=1.3e-19  Score=159.21  Aligned_cols=162  Identities=18%  Similarity=0.124  Sum_probs=106.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC-------CCC-------CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS-------FTT-------SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      ....++|+++|.+++|||||+++|.+..       +..       ......++++....+.++.....+.||||||++.|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3567999999999999999999998631       000       00111122111112223222368999999999999


Q ss_pred             cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCc--cChHHHHHHHHHhC--
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRA--VPTSKGQALADEYG--  152 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~--  152 (217)
                      .......++.+|++|+|+|++++... ....++..+...   ++| +|+|+||+|+.++...  ...+++..++...+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            88888899999999999999886432 233344444443   577 7899999998652111  12244556666655  


Q ss_pred             ---CeEEEEcCCCC--------CCHHHHHHHHHHHH
Q 027918          153 ---IKFFETSAKTN--------LNVEQVFFSIARDI  177 (217)
Q Consensus       153 ---~~~~~~Sa~~~--------~~i~~l~~~l~~~~  177 (217)
                         ++++++||++|        .|+.++++.|.+.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence               68999999999        35677777666543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.80  E-value=1.6e-19  Score=133.45  Aligned_cols=160  Identities=16%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             CCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----------ccc
Q 027918           10 ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----------FRT   79 (217)
Q Consensus        10 ~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~   79 (217)
                      .......+|+|+|++|+|||||+++|.+..+.....++.+.......+.+++   .+.+||+||...          +..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            3445568999999999999999999998763322233333333222333333   578999999742          222


Q ss_pred             hhhhcc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-CccChHHHHHHHHHhC-
Q 027918           80 ITTAYY---RGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESK-RAVPTSKGQALADEYG-  152 (217)
Q Consensus        80 ~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-  152 (217)
                      ....++   ..++++++++|+.++.+..+  +..|+   ..   .+.|+++|+||+|+.... .......+..++.... 
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~  171 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG  171 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence            222333   57899999999987654432  22232   22   268999999999974321 1111234445555554 


Q ss_pred             -CeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          153 -IKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       153 -~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                       +.++++|++++.++++++++|.+.+.
T Consensus       172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          172 DVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             CEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCceEEEeecCCCCHHHHHHHHHHHHh
Confidence             57889999999999999999887753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.79  E-value=1.7e-18  Score=148.29  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=85.6

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcC--CC------CC----------CcccceeeeEEEEEEEECCeEEEEEEeeCC
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDG--SF------TT----------SFITTIGIDFKIRTIELDGKRIKLQIWDTA   72 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~--~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~   72 (217)
                      ..++..+|+|+|.+|+|||||+++|+..  .+      ..          ......++......+...+  ..++|||||
T Consensus         8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTP   85 (691)
T 1dar_A            8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTP   85 (691)
T ss_dssp             CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCC
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECc
Confidence            3467799999999999999999999841  11      00          0011222333334445555  789999999


Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      |+..|...+..+++.+|++|+|+|+++..+......|.. +...   +.|+++|+||+|+..
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            999999999999999999999999998877776666653 3332   689999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.78  E-value=1.5e-18  Score=140.01  Aligned_cols=160  Identities=13%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc----ccchhhh---cccCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER----FRTITTA---YYRGAM   89 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~---~~~~~d   89 (217)
                      .|+|+|++|||||||++.|.+........+..+.......+..++ ...+.+||+||...    +..+...   .+..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999998643211122222333334444443 14789999999743    2222222   245789


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      .+++++|++ ...+..+..|...+..+..  ...|.++|+||+|+...   ...+.+.......+++++.+||+++.|++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            999999998 6667777777777765431  24789999999998542   22333444455557899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027918          168 QVFFSIARDIKQRL  181 (217)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (217)
                      +++++|.+.+....
T Consensus       314 eL~~~i~~~l~~~~  327 (416)
T 1udx_A          314 ALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999886543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=5.3e-18  Score=144.77  Aligned_cols=116  Identities=14%  Similarity=0.172  Sum_probs=83.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-------------c-----ccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-------------F-----ITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-------------~-----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .+...+|+|+|+.|+|||||+++|++......             .     ....+.......+....  +.++||||||
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG   83 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPG   83 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCC
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCC
Confidence            34567999999999999999999984321100             0     11223333444445555  7899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      +..+...+..+++.+|++++|+|+++.-.... ..++..+...   +.|+++|+||+|+.
T Consensus        84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           84 YGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             ccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence            99999889999999999999999877544332 2444444443   68999999999985

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.78  E-value=1.6e-18  Score=148.53  Aligned_cols=163  Identities=17%  Similarity=0.216  Sum_probs=106.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-cccceee--eE--------------------------------------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-FITTIGI--DF--------------------------------------   52 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~-~~~~~~~--~~--------------------------------------   52 (217)
                      ..++|+|+|.+|+|||||+|+|++..+.+. ..+++..  .+                                      
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            458999999999999999999998765432 2222210  00                                      


Q ss_pred             -------------EEEEEEECCeE--EEEEEeeCCCccc---ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 027918           53 -------------KIRTIELDGKR--IKLQIWDTAGQER---FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE  114 (217)
Q Consensus        53 -------------~~~~~~~~~~~--~~~~l~Dt~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~  114 (217)
                                   ....+......  ..+.||||||...   ....+..+++.+|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                         00000010000  2589999999654   34456678899999999999998877777666654443


Q ss_pred             HhcCCCCcEEEEEeCCCCCCCCC--ccChH-------HHHH-----HHHH--------hCCeEEEEcCC-----------
Q 027918          115 QHASDNVNKVLVGNKADMDESKR--AVPTS-------KGQA-----LADE--------YGIKFFETSAK-----------  161 (217)
Q Consensus       115 ~~~~~~~pvivv~nK~Dl~~~~~--~~~~~-------~~~~-----~~~~--------~~~~~~~~Sa~-----------  161 (217)
                      .   .+.|+++|+||+|+.....  ....+       ....     +...        ...+++++||+           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   2578999999999854210  01100       1111     1111        12478999999           


Q ss_pred             ---CCCCHHHHHHHHHHHHHH
Q 027918          162 ---TNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       162 ---~~~~i~~l~~~l~~~~~~  179 (217)
                         ++.|++++++.|.+.+..
T Consensus       305 ~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CCCTTSSHHHHHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHHHHHH
Confidence               999999999999887754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.77  E-value=2.8e-19  Score=142.69  Aligned_cols=156  Identities=12%  Similarity=0.106  Sum_probs=103.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE----------------------------------------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK----------------------------------------   53 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~----------------------------------------   53 (217)
                      ..++|+|+|++|||||||+++|.+..+.+......+....                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            4569999999999999999999997763332222110000                                        


Q ss_pred             --------------EEEEEECCeEEEEEEeeCCCcccc-------------cchhhhcccCCcEEEEEEeCCChhhHHHH
Q 027918           54 --------------IRTIELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDVTDESSFNNI  106 (217)
Q Consensus        54 --------------~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~  106 (217)
                                    ...+.... ...+.||||||...+             ......+++++|++|++++..+.+...  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--
T ss_pred             HhcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--
Confidence                          00111111 136899999998765             456677899999999999876543221  


Q ss_pred             HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918          107 RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus       107 ~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ..|+..+......+.|+++|+||+|+... .....+..+.+....+.+|+.++++.+.++++.+..+
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence            33455555555557899999999998653 2333343444444556789999999988877765543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=8.3e-18  Score=139.86  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=80.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-------------C---------cccceeeeEEEEEEEECCeEEEEEEee
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-------------S---------FITTIGIDFKIRTIELDGKRIKLQIWD   70 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-------------~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D   70 (217)
                      ....+|+|+|.+|+|||||+++|+......             .         ...+.+.......+..++  ..+.|||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liD   88 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLD   88 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEEC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEE
Confidence            456899999999999999999998631100             0         011111122223344455  7899999


Q ss_pred             CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      |||+..|...+..+++.+|++|+|+|+++...... ..++..+.   ..++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            99999999888889999999999999987643222 22222222   23789999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=4.3e-18  Score=145.86  Aligned_cols=117  Identities=19%  Similarity=0.185  Sum_probs=85.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHc--CCCCC-----------C-----cccceeeeEEEEEEEECCeEEEEEEeeCCC
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSD--GSFTT-----------S-----FITTIGIDFKIRTIELDGKRIKLQIWDTAG   73 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~--~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G   73 (217)
                      .++..+|+|+|.+|+|||||+++|+.  ..+..           .     ..+..+.......+.+++  ..++||||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            45678999999999999999999984  22110           0     011222222233455555  7899999999


Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +..+...+..+++.+|++++|+|+++..+......|.. +...   +.|+++|+||+|+..
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECTTSTT
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEECCCccc
Confidence            99999989999999999999999998777666655543 3332   689999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.77  E-value=5.8e-18  Score=130.01  Aligned_cols=119  Identities=18%  Similarity=0.155  Sum_probs=82.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhh-------h-
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT-------A-   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~-   83 (217)
                      ...++|+|+|.+|+|||||+|+|++..+. ....++.+.+.....+..++  ..+.||||||...+.....       . 
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            34699999999999999999999987753 22223333334444455565  7899999999876643222       1 


Q ss_pred             -cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918           84 -YYRGAMGILLVYDVTDESSFNN-IRNWIRNIEQHASDN--VNKVLVGNKADMDE  134 (217)
Q Consensus        84 -~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~  134 (217)
                       ..+.+|+++||+|++... +.. ...|+..+......+  .|+++|+||+|+..
T Consensus       115 ~~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hhcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence             134799999999987532 322 335777776654433  69999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.77  E-value=1.1e-17  Score=143.40  Aligned_cols=119  Identities=17%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCC--CCCC----------------cccceeeeEEEEEEEEC-----CeEEEEEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGS--FTTS----------------FITTIGIDFKIRTIELD-----GKRIKLQI   68 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~--~~~~----------------~~~~~~~~~~~~~~~~~-----~~~~~~~l   68 (217)
                      .++..+|+|+|..|+|||||+++|+...  +...                .....++......+.++     +....++|
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3567899999999999999999997531  1100                01122222232333332     23378999


Q ss_pred             eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      |||||+..|...+..+++.+|++|+|+|+++.........|. .+..   .++|+++|+||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH---cCCCEEEEEeCCCccc
Confidence            999999999988999999999999999999876555444443 2222   2689999999999854

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=2.2e-19  Score=139.81  Aligned_cols=164  Identities=22%  Similarity=0.290  Sum_probs=86.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC-CCCCCc--------ccceeeeEEEEEEEECCeEEEEEEeeCCCc-------cc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG-SFTTSF--------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQ-------ER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~   76 (217)
                      ...++|+|+|++|+|||||+++|++. .+....        .++.........+..++....+++||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            44589999999999999999999875 333222        112111111222222444578999999997       44


Q ss_pred             ccchhh-------hcccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           77 FRTITT-------AYYRG-------------AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        77 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      +..+..       .+++.             +++++|+.+.+. .+++.+.  ...+.... .+.|+++|+||.|+....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~  171 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK  171 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence            444433       33322             334555554332 1222222  12233332 357999999999985421


Q ss_pred             -CccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHHh
Q 027918          137 -RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  181 (217)
                       .....+++..++..++++++++||+++ +++++|..+.+.+....
T Consensus       172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence             112345677888889999999999999 99999999998886543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=6.9e-18  Score=132.27  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=96.8

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc------cceeeeEE--------------------------------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI------TTIGIDFK--------------------------------   53 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~------~~~~~~~~--------------------------------   53 (217)
                      ....++|+|+|.+|+|||||+|+|++..+.+...      ++......                                
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE  100 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence            3456899999999999999999999987632211      10000000                                


Q ss_pred             ---------------------EEEEEECCeEEEEEEeeCCCccc-------------ccchhhhcccCCcEEEEEEeCCC
Q 027918           54 ---------------------IRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        54 ---------------------~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                                           ...+...+ ...+.||||||...             +...+..++..+|++++|+|..+
T Consensus       101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~  179 (315)
T 1jwy_B          101 EIIRDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN  179 (315)
T ss_dssp             HHHHHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred             HHHHHHHHhcCCCCCccCccEEEEEecCC-CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence                                 00001111 14799999999753             34556678899999999999743


Q ss_pred             hhhH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC------CCCHHHHHHH
Q 027918          100 ESSF-NNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT------NLNVEQVFFS  172 (217)
Q Consensus       100 ~~s~-~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~  172 (217)
                      .... .....+...+   ...+.|+++|+||+|+..... ...+.+.......+..++++++..      +.|+.++++.
T Consensus       180 ~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~  255 (315)
T 1jwy_B          180 TDLANSDALQLAKEV---DPEGKRTIGVITKLDLMDKGT-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS  255 (315)
T ss_dssp             SCSTTCSHHHHHHHH---CSSCSSEEEEEECTTSSCSSC-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred             cchhhhHHHHHHHHh---CCCCCcEEEEEcCcccCCcch-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence            3211 1111222222   234689999999999865322 122222210011225666766653      6889999988


Q ss_pred             HHHHHHH
Q 027918          173 IARDIKQ  179 (217)
Q Consensus       173 l~~~~~~  179 (217)
                      +.+.+..
T Consensus       256 ~~~~~~~  262 (315)
T 1jwy_B          256 EILYFKN  262 (315)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhC
Confidence            8777643

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.74  E-value=1.9e-18  Score=138.97  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEE--E-------------------EECC-eEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--I-------------------ELDG-KRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~l~Dt~G   73 (217)
                      ++|+|+|.+|+|||||+|+|.+........+..+.+.....  +                   .+++ ..+.+.||||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987643333333332222221  1                   1122 247899999999


Q ss_pred             ccc----ccchhh---hcccCCcEEEEEEeCCCh
Q 027918           74 QER----FRTITT---AYYRGAMGILLVYDVTDE  100 (217)
Q Consensus        74 ~~~----~~~~~~---~~~~~~d~~i~v~d~~~~  100 (217)
                      ...    ...+..   ..++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    222222   456899999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.73  E-value=6.6e-18  Score=136.30  Aligned_cols=161  Identities=17%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc-------ccceeeeEEEEEEEECCeEEEEEEeeCCCccccc------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSF-------ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR------   78 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------   78 (217)
                      ...++|+|+|++|+|||||++.|++..+. ...       .++.........+...+....+++||++|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34478999999999999999999987652 111       1222212211222223434589999999975431      


Q ss_pred             -c------------------hhhhcccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           79 -T------------------ITTAYYRGAMGILLVYDVTDE-SSFNNIR-NWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        79 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                       .                  +...++.++++.+++|..... .++.... .|+..+.    .+.|+|+|+||+|+.. ..
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~-~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT-PE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc-HH
Confidence             1                  113345555554444444332 2333333 4555553    2689999999999854 22


Q ss_pred             ccCh--HHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          138 AVPT--SKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       138 ~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      .+..  +.+..++..++++++++|++++.++.++|..|...+.
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            2222  5667777888999999999999999988877776543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=2e-18  Score=134.48  Aligned_cols=133  Identities=22%  Similarity=0.216  Sum_probs=107.3

Q ss_pred             HHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChh-hHHHHH
Q 027918           30 CLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDES-SFNNIR  107 (217)
Q Consensus        30 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  107 (217)
                      +|+.++..+.+. ..+.+|.+..+. ..+..++   .+.+||+  +++++.+++.+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577888888887 778888884443 3332233   7899999  8999999999999999999999999987 688899


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC--CeEEEEcCCCCCCHHHHHHHHH
Q 027918          108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG--IKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       108 ~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      .|+..+...   +.|+++|+||+|+.+. ..  .++.+.++..++  ++++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~~---~~piilv~NK~DL~~~-~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEKN---ELETVMVINKMDLYDE-DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHHT---TCEEEEEECCGGGCCH-HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHHC---CCCEEEEEeHHHcCCc-hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            999877652   6899999999998642 11  144667777777  8999999999999999998765

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=2.2e-16  Score=131.89  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=85.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC----------------------CCCCcccceeeeEEEEEEEECCeEEEEEEee
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS----------------------FTTSFITTIGIDFKIRTIELDGKRIKLQIWD   70 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D   70 (217)
                      .+.=+|+|+|..++|||||..+|+...                      .........++......+.+++  ..++|+|
T Consensus        29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlID  106 (548)
T 3vqt_A           29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLD  106 (548)
T ss_dssp             HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEEC
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEe
Confidence            345689999999999999999996310                      0112233334444455666777  7899999


Q ss_pred             CCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      |||+..|.......++-+|++|+|+|+...-...+...|... ..+   ++|+++++||+|....
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a-~~~---~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVC-RMR---ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHH-HHT---TCCEEEEEECTTSCCC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHH-HHh---CCceEEEEecccchhc
Confidence            999999999999999999999999999987655555556433 333   7999999999997543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.68  E-value=1.1e-15  Score=120.79  Aligned_cols=145  Identities=14%  Similarity=0.113  Sum_probs=91.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccccc--
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERFR--   78 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~--   78 (217)
                      ++|+|+|.+|+|||||+|+|.+..+.....+..+.+.....+.+.+.               ...+.||||||...+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            68999999999999999999987654333333333333333444432               1479999999987643  


Q ss_pred             --ch---hhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------------
Q 027918           79 --TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI------------------------------  113 (217)
Q Consensus        79 --~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l------------------------------  113 (217)
                        .+   ...+++.+|++++|+|+++.          +.++++..+..++                              
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~  162 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL  162 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence              22   23357899999999999862          2233322211111                              


Q ss_pred             ----------HH-------------------h-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCC
Q 027918          114 ----------EQ-------------------H-ASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK  161 (217)
Q Consensus       114 ----------~~-------------------~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (217)
                                ..                   + .....|+++++|+.|... ........++.++...+.+++++||+
T Consensus       163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~  239 (363)
T 1jal_A          163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAA  239 (363)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechH
Confidence                      10                   0 012489999999998532 12234566777887888999999965

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=2.2e-18  Score=137.10  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=92.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCc------cccee--------------------------------------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF------ITTIG--------------------------------------   49 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~------~~~~~--------------------------------------   49 (217)
                      ..++|+|+|.+|+|||||+|+|.+..+.+..      .++..                                      
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            4579999999999999999999998764211      12100                                      


Q ss_pred             -----eeE--EEEEEEECCeEEEEEEeeCCCcc-------------cccchhhhcccCCcEE-EEEEeCCChhhHHHHHH
Q 027918           50 -----IDF--KIRTIELDGKRIKLQIWDTAGQE-------------RFRTITTAYYRGAMGI-LLVYDVTDESSFNNIRN  108 (217)
Q Consensus        50 -----~~~--~~~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~-i~v~d~~~~~s~~~~~~  108 (217)
                           +..  ....+...+ ...+.||||||..             .+..+...++...+.+ ++|++++..-.-.+   
T Consensus       110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                 000  001111110 2579999999963             2344556677665544 44566654222112   


Q ss_pred             HHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH--HHHHhC-CeEEEEcCCCCCCHHHHHHHHHH
Q 027918          109 WIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA--LADEYG-IKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       109 ~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |...+......+.|+++|+||+|+.+.... ..+..+.  +....+ .+++.+||+++.|++++++.+.+
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            222333334457899999999998653221 1111110  001123 25678999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.67  E-value=6.1e-17  Score=120.53  Aligned_cols=155  Identities=18%  Similarity=0.135  Sum_probs=93.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeee--------------EEEEEEEEC----------------CeE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGID--------------FKIRTIELD----------------GKR   63 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~----------------~~~   63 (217)
                      ...+|+|+|.+|+|||||+++|++.............+              .....+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            35799999999999999999998642111111110000              011111110                012


Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      ..+.+|||+|.....   ..+....+.+++|+|+.+...  ....+...   .   +.|+++|+||+|+... .....++
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~-~~~~~~~  176 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEA-VGADVEK  176 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHH-HTCCHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcc-hhhHHHH
Confidence            468889988851111   111135688999999876532  11111111   1   4688999999998431 1234455


Q ss_pred             HHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          144 GQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       144 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ...++...  .++++++||++|.|+++++++|.+.+...
T Consensus       177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            55555554  37899999999999999999998877543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.66  E-value=2.8e-16  Score=137.22  Aligned_cols=118  Identities=22%  Similarity=0.246  Sum_probs=85.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCC------------CCC----CcccceeeeEEEEEEEE--------------CCe
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGS------------FTT----SFITTIGIDFKIRTIEL--------------DGK   62 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~------------~~~----~~~~~~~~~~~~~~~~~--------------~~~   62 (217)
                      ++..+|+|+|..++|||||+++|+...            +..    ...+..++......+.+              ++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            567899999999999999999998631            100    01111122111122222              334


Q ss_pred             EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .+.++||||||+.+|...+..+++.+|++|+|+|++++.++.....|.....    .+.|+++|+||+|+..
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcch
Confidence            5899999999999999999999999999999999999877777666654332    2689999999999853

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.64  E-value=2.9e-16  Score=124.93  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=68.9

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      ..+.||||||..   ......+..+|++++|+|....+....+...        -.+.|+++|+||+|+... .. ....
T Consensus       172 ~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~-~~-~~~~  238 (355)
T 3p32_A          172 FDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHH-KE-ARLA  238 (355)
T ss_dssp             CCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGH-HH-HHHH
T ss_pred             CCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcCh-hH-HHHH
Confidence            579999999943   2233445889999999998765443222110        113689999999998431 01 1111


Q ss_pred             HHHHHHH---h-------CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          144 GQALADE---Y-------GIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       144 ~~~~~~~---~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      ...+...   .       +.+++.+||++|.|+++++++|.+.+..
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1222221   1       4689999999999999999999988765

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.62  E-value=8.1e-18  Score=125.72  Aligned_cols=154  Identities=19%  Similarity=0.223  Sum_probs=90.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEE------------EEEEEEC-CeE-----------------
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFK------------IRTIELD-GKR-----------------   63 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~~-----------------   63 (217)
                      ..++|+|+|.+|+|||||+++|+...+...+..+...++.            ...+.++ +..                 
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999976554433344333321            1111111 100                 


Q ss_pred             --EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh
Q 027918           64 --IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT  141 (217)
Q Consensus        64 --~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~  141 (217)
                        ..+.++|++|.-...   ..+-...+..+.++|.........  .....   .   +.|+++|+||+|+.+ ......
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~-~~~~~~  184 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLAD-AVGADI  184 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHH-HHTCCH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCc-hhHHHH
Confidence              135555555521110   011122344566666432211100  00111   1   468899999999853 122345


Q ss_pred             HHHHHHHHHh--CCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          142 SKGQALADEY--GIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       142 ~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      ++...++...  +.+++++||++|.|++++|++|.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          185 KKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5666666654  4799999999999999999999887653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.61  E-value=1.3e-15  Score=127.24  Aligned_cols=119  Identities=19%  Similarity=0.178  Sum_probs=80.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCC---CCcccceeeeEEEEEEE------EC----------------------
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT---TSFITTIGIDFKIRTIE------LD----------------------   60 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~---~~~~~~~~~~~~~~~~~------~~----------------------   60 (217)
                      .+..++|+|+|.+|+|||||+|+|++..+.   ....++++. .......      .+                      
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~-~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~  140 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC-FVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL  140 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS-EEEEECCSSSEEECCC------------------CCC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce-EEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence            456789999999999999999999998763   222222211 1100000      00                      


Q ss_pred             -CeE---------EEEEEeeCCCccc-----------ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCC
Q 027918           61 -GKR---------IKLQIWDTAGQER-----------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASD  119 (217)
Q Consensus        61 -~~~---------~~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~  119 (217)
                       +..         ..+.||||||...           +...+..++..+|++++|+|+++.........|+..+..   .
T Consensus       141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~  217 (550)
T 2qpt_A          141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---H  217 (550)
T ss_dssp             TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---C
T ss_pred             ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---c
Confidence             000         2589999999764           345566778899999999999875444555566555543   3


Q ss_pred             CCcEEEEEeCCCCCC
Q 027918          120 NVNKVLVGNKADMDE  134 (217)
Q Consensus       120 ~~pvivv~nK~Dl~~  134 (217)
                      +.|+++|+||+|+..
T Consensus       218 ~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 EDKIRVVLNKADMVE  232 (550)
T ss_dssp             GGGEEEEEECGGGSC
T ss_pred             CCCEEEEEECCCccC
Confidence            579999999999854

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=1.7e-15  Score=120.47  Aligned_cols=155  Identities=15%  Similarity=0.156  Sum_probs=93.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC-------------------eEEEEEEeeCCCccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG-------------------KRIKLQIWDTAGQER   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~Dt~G~~~   76 (217)
                      ++|+++|.+|+|||||+|+|.+........+..+.+.......+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5899999999999999999987643222122222222212222221                   225799999999875


Q ss_pred             cc----ch---hhhcccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH--------------------------
Q 027918           77 FR----TI---TTAYYRGAMGILLVYDVTDE----------SSFNNIRNWIRNI--------------------------  113 (217)
Q Consensus        77 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l--------------------------  113 (217)
                      ..    .+   ....++.+|++++|+|+++.          +..+++..+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            42    12   23357899999999999752          1122221111111                          


Q ss_pred             -------------HH-------------------hc-CCCCcEEEEEeCCCC--CCCCCccChHHHHHHHHHhCCeEEEE
Q 027918          114 -------------EQ-------------------HA-SDNVNKVLVGNKADM--DESKRAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus       114 -------------~~-------------------~~-~~~~pvivv~nK~Dl--~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                                   ..                   +. -...|+++++||.|.  .+.......+.++.++...+.+++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                         00                   00 013799999999983  22111334566778888888999999


Q ss_pred             cCCCCCCHHHHH
Q 027918          159 SAKTNLNVEQVF  170 (217)
Q Consensus       159 Sa~~~~~i~~l~  170 (217)
                      ||+...++.++.
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998765555544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.58  E-value=4.7e-16  Score=132.25  Aligned_cols=113  Identities=17%  Similarity=0.173  Sum_probs=81.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC--CC------C----------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG--SF------T----------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~--~~------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      -||+|+|..++|||||..+|+..  ..      .          .......++......+.+++  ..++|+|||||..|
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~DF   80 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMDF   80 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSST
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHHH
Confidence            47999999999999999998631  11      0          01112233333334445555  68999999999999


Q ss_pred             cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .......++-+|++|+|+|+...-...+...|... ..+   ++|.++++||+|...
T Consensus        81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a-~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHAL-RKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHH-HHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHH-HHc---CCCeEEEEecccccc
Confidence            99999999999999999999876544444444433 333   689999999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.58  E-value=2.3e-14  Score=123.36  Aligned_cols=119  Identities=17%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcC--------CCC----------CCcccceeeeEEEEEEEECC-----eEEEEEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDG--------SFT----------TSFITTIGIDFKIRTIELDG-----KRIKLQI   68 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~l   68 (217)
                      .++.-||+|+|..++|||||..+|+..        ...          .......++......+.+.+     ..+.++|
T Consensus        10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl   89 (709)
T 4fn5_A           10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV   89 (709)
T ss_dssp             GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred             hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence            466678999999999999999998631        111          11222333333344444431     2478999


Q ss_pred             eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      +|||||..|.......++-+|++|+|+|+...-...+...|......    ++|.++|+||+|...
T Consensus        90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY----GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred             EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc----CCCeEEEEccccccC
Confidence            99999999999999999999999999999886555555555554444    799999999999754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.4e-14  Score=111.78  Aligned_cols=155  Identities=16%  Similarity=0.152  Sum_probs=102.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-------chhhhcc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-------TITTAYY   85 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~   85 (217)
                      +...+|.++|.||+|||||+|+|.+........+.+|.+.....+.+.+  .++.|+||||...-.       ......+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            4457999999999999999999999887767778888888888888888  689999999964321       1123356


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC-------CCCccChHHHHHHHHHhCCeEE
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDE-------SKRAVPTSKGQALADEYGIKFF  156 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~  156 (217)
                      +.+|++++|+|++++.  .+...+..++....  -...|.++++||.|...       .......++...+...+.+.--
T Consensus       148 ~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k  225 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA  225 (376)
T ss_dssp             HHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred             HhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence            7899999999999864  33333334443322  12467889999999632       1123445556666555554222


Q ss_pred             EEcCCCCCCHHHHHH
Q 027918          157 ETSAKTNLNVEQVFF  171 (217)
Q Consensus       157 ~~Sa~~~~~i~~l~~  171 (217)
                      ++-...+...+++.+
T Consensus       226 pv~~~~nv~eddl~d  240 (376)
T 4a9a_A          226 EIAFRCDATVDDLID  240 (376)
T ss_dssp             EEEECSCCCHHHHHH
T ss_pred             CeeecccCCHHHHHH
Confidence            222223344455443

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.57  E-value=5.5e-14  Score=111.44  Aligned_cols=103  Identities=12%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      ..+.|+||+|....   .......+|++++|+|+..+.....+..   .+     ...|.++|+||+|+.+.. . ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~-~-~~~~  233 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIV-P-ARRI  233 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHH-H-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCch-h-HHHH
Confidence            57899999995321   2334678999999999986543221211   11     146889999999984310 0 0011


Q ss_pred             HHHHHH----------HhCCeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          144 GQALAD----------EYGIKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       144 ~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      ...+..          ....+++.+||++|.|+++++++|.+.+..
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            222211          113578999999999999999999887643

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.53  E-value=6.7e-15  Score=125.96  Aligned_cols=159  Identities=15%  Similarity=0.130  Sum_probs=95.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceee------------------------------------------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGI------------------------------------------   50 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~------------------------------------------   50 (217)
                      -..++|+|+|.+++|||||+|.|++..+-+......+.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            34579999999999999999999997763211111110                                          


Q ss_pred             ---------eEEEEEEEECCeEEEEEEeeCCCccc-------------ccchhhhcc-cCCcEEEEEEeCCChhhHHHHH
Q 027918           51 ---------DFKIRTIELDGKRIKLQIWDTAGQER-------------FRTITTAYY-RGAMGILLVYDVTDESSFNNIR  107 (217)
Q Consensus        51 ---------~~~~~~~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  107 (217)
                               +.....+...+. ..+.|+||||...             .......++ ..+|++++|+|++......+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                     001111111111 3588999999543             112233344 5789999999998753322322


Q ss_pred             HHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH-H-HHHhC-CeEEEEcCCCCCCHHHHHHHHHHH
Q 027918          108 NWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA-L-ADEYG-IKFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       108 ~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      .++..+   ...+.|+++|+||+|+..... ........ + ....+ .+++.+||++|.|++++++.+.+.
T Consensus       208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~-~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          208 KIAKEV---DPQGQRTIGVITKLDLMDEGT-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHH---CTTCSSEEEEEECTTSSCTTC-CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHH---HhcCCCEEEEEeCcccCCcch-hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            233333   334689999999999865322 11111110 0 00112 367789999999999999988763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.52  E-value=6.2e-15  Score=116.65  Aligned_cols=103  Identities=16%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccCh--
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPT--  141 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~--  141 (217)
                      ..+.||||||......   .....+|++++|+|+...+.+..+..   ..  .   +.|+++|+||+|+... .....  
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~-~~~~~~~  216 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNH-TNVAIAR  216 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCH-HHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCCh-HHHHHHH
Confidence            5799999999654332   24588999999999976543221111   11  1   3578999999998541 11110  


Q ss_pred             HHHHHHHHHh-------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          142 SKGQALADEY-------GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       142 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +.........       ..+++++||++|.|+++++++|.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1122211121       357899999999999999999988765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.51  E-value=1.5e-13  Score=104.79  Aligned_cols=112  Identities=13%  Similarity=-0.016  Sum_probs=67.8

Q ss_pred             EEEEEeeCCCcccccchhh------hcccCCcEEEEEEeCCChhhHHHHHHHHH-HHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITT------AYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~-~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                      +.+.||||||.........      ..+.. +++++++|............... ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4799999999876433211      24456 88888998754332222221111 1111111257999999999985421


Q ss_pred             CccChHHHHH----------------------------HHHHhC--CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          137 RAVPTSKGQA----------------------------LADEYG--IKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       137 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                       .  .++...                            ++..++  .+++++||+++.|+++++++|.+.+..
T Consensus       188 -~--~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          188 -E--KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             -H--HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -c--HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence             1  111111                            123333  489999999999999999999887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.44  E-value=2.9e-13  Score=105.31  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             cccccchhhhcccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHHHHHHHHHh
Q 027918           74 QERFRTITTAYYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADEY  151 (217)
Q Consensus        74 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~~  151 (217)
                      +++++.+.+.+++++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+. ..+. .++...++...
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~-~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNE-EEKKELERWISIYRDA  141 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCH-HHHHHHHHHHHHHHHT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCc-cccHHHHHHHHHHHHC
Confidence            6677788888999999999999999986 78888899887765   36899999999998642 1111 34455666677


Q ss_pred             CCeEEEEcCCCCCCHHHHHHHHH
Q 027918          152 GIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      +.+++++||++|.|++++++.+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            88999999999999999987763

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.43  E-value=4e-13  Score=105.97  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=62.8

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      ..+.|+||+|...-.   ......+|.+++++|....+....+..+   +.     ..+.++++||+|+... .......
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~-~~~s~~~  215 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDG-ERRASAA  215 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCc-hhHHHHH
Confidence            589999999964321   2234689999999998654322111111   11     2355778899996431 1112222


Q ss_pred             HHHHHHHh----------CCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          144 GQALADEY----------GIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       144 ~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      .+.+....          ..+++.+|+.++.|++++++.|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            23332211          357899999999999999999988654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.37  E-value=7.1e-12  Score=100.25  Aligned_cols=87  Identities=18%  Similarity=0.207  Sum_probs=63.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~   76 (217)
                      ....+|+|+|++|+|||||+|.|.+... .....++.+.+.....+.+.+.               ...+.+||+||...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999999766 4455555555555555555541               13689999999543


Q ss_pred             -------ccchhhhcccCCcEEEEEEeCCC
Q 027918           77 -------FRTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        77 -------~~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                             +...+...++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234456688999999999864

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.37  E-value=9.3e-14  Score=100.53  Aligned_cols=103  Identities=9%  Similarity=-0.022  Sum_probs=67.5

Q ss_pred             CCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHH----HHhc-CCCCcEEEEEeCC-CCCCCCCccChHHHH
Q 027918           72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI----EQHA-SDNVNKVLVGNKA-DMDESKRAVPTSKGQ  145 (217)
Q Consensus        72 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l----~~~~-~~~~pvivv~nK~-Dl~~~~~~~~~~~~~  145 (217)
                      +|+..++.+|++||.++|++|||+|++|.+.++ .+.-+..+    .... ..+.|++|++||. |++.   ..+..++.
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~---Ams~~EI~  185 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA  185 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC---BCCHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC---CCCHHHHH
Confidence            378899999999999999999999999875433 22222222    2211 1468999999995 6643   33444433


Q ss_pred             HHHH----HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          146 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +...    ...|.+..|||.+|+|+.+.++||.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            3321    23478899999999999999999987663

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.36  E-value=6.3e-13  Score=106.13  Aligned_cols=88  Identities=16%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCcccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   77 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   77 (217)
                      ...++|+|+|.+|+|||||+|+|.+..+.....++.+.+.....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            45589999999999999999999998765555555555555555555432               135999999997764


Q ss_pred             cc-------hhhhcccCCcEEEEEEeCCCh
Q 027918           78 RT-------ITTAYYRGAMGILLVYDVTDE  100 (217)
Q Consensus        78 ~~-------~~~~~~~~~d~~i~v~d~~~~  100 (217)
                      .+       .+..+++.+|++++|+|+.+.
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            43       456678999999999998764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.27  E-value=3.6e-12  Score=96.64  Aligned_cols=105  Identities=8%  Similarity=-0.037  Sum_probs=72.9

Q ss_pred             CCCcccccchhhhcccCCcEEEEEEeCCChhhHH---HHHHHHHHHHHhc-CCCCcEEEEEeC-CCCCCCCCccChHHHH
Q 027918           71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHA-SDNVNKVLVGNK-ADMDESKRAVPTSKGQ  145 (217)
Q Consensus        71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~l~~~~-~~~~pvivv~nK-~Dl~~~~~~~~~~~~~  145 (217)
                      .+|+..++.+|++|+.++|++|||+|++|++.++   ++..+...+.... ..+.|++|++|| .|++.   ..+..++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~---Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK---RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC---BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC---CCCHHHHH
Confidence            3578899999999999999999999999986433   2222222332221 237899999996 68754   33434333


Q ss_pred             HHHH----HhCCeEEEEcCCCCCCHHHHHHHHHHHHH
Q 027918          146 ALAD----EYGIKFFETSAKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       146 ~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  178 (217)
                      +...    ...+.+..|||.+|+|+.+.++||.+.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            3221    13478899999999999999999998763

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.06  E-value=1e-11  Score=99.16  Aligned_cols=140  Identities=16%  Similarity=0.158  Sum_probs=83.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hh
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------IT   81 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~   81 (217)
                      .+|+++|.+|+|||||+|+|++.      .......++++.+.  ..+.++.   .+.++||||......        ..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHH
Confidence            47999999999999999999985      23233344444333  3344443   389999999543221        11


Q ss_pred             hhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918           82 TAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus        82 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      ..++  +..+.++++++....-.+..+..    +......+.|+++++||.|..+  ........+.+.+..+..+...+
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCCCC
Confidence            2222  67889999998843211101110    1122234689999999999754  23334455556666676665555


Q ss_pred             CCCCCCH
Q 027918          160 AKTNLNV  166 (217)
Q Consensus       160 a~~~~~i  166 (217)
                      +.+..++
T Consensus       312 ~~~~~~~  318 (369)
T 3ec1_A          312 KRYAAEF  318 (369)
T ss_dssp             GGGTTTC
T ss_pred             chhhhhc
Confidence            5544443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.06  E-value=2.8e-10  Score=91.67  Aligned_cols=60  Identities=23%  Similarity=0.379  Sum_probs=35.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc----ccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF----ITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ++++|+|++|+|||||++.|++..+....    .+..............+....++++|++|..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            57999999999999999999987543211    1121222111222222333478999999853

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.02  E-value=4.6e-10  Score=89.49  Aligned_cols=96  Identities=22%  Similarity=0.312  Sum_probs=72.5

Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHH----HHH
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQ----ALA  148 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~----~~~  148 (217)
                      ..+.|..++..+++.++++++|+|+.++.     ..|...+.+... +.|+++|+||+|+.+.  ....+...    .++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~--~~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPK--SVKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCT--TSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCc--ccCHHHHHHHHHHHH
Confidence            35778888999999999999999998864     446666666554 6899999999998542  22233333    335


Q ss_pred             HHhCC---eEEEEcCCCCCCHHHHHHHHHHH
Q 027918          149 DEYGI---KFFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      ...+.   .++.+||++|.|++++++.|.+.
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            66676   79999999999999999988653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.99  E-value=3.8e-10  Score=93.04  Aligned_cols=150  Identities=13%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHH------cCCCC---C-Ccccc-----------eeeeEEEEEE--------------
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFS------DGSFT---T-SFITT-----------IGIDFKIRTI--------------   57 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~------~~~~~---~-~~~~~-----------~~~~~~~~~~--------------   57 (217)
                      .....|+|+|.+|+||||+++.|.      +....   . .+.+.           .+..++....              
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            345689999999999999999998      33211   0 00000           0111111000              


Q ss_pred             -EECCeEEEEEEeeCCCcccccc-hhh---hc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeC
Q 027918           58 -ELDGKRIKLQIWDTAGQERFRT-ITT---AY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNK  129 (217)
Q Consensus        58 -~~~~~~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK  129 (217)
                       ...+  ..+.|+||||...... ++.   ..  ...+|.+++|+|+......   ......+...    .|+ ++|+||
T Consensus       179 ~~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~----~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK----VDVASVIVTK  249 (504)
T ss_dssp             HHHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH----HCCCCEEEEC
T ss_pred             HHHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh----cCceEEEEeC
Confidence             0023  5799999999754221 111   11  2278999999999875431   1222223321    464 889999


Q ss_pred             CCCCCCCCccChHHHHHHHHHhCCeE------------------EEEcCCCCCC-HHHHHHHHHHH
Q 027918          130 ADMDESKRAVPTSKGQALADEYGIKF------------------FETSAKTNLN-VEQVFFSIARD  176 (217)
Q Consensus       130 ~Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~l~~~  176 (217)
                      .|.... .    ..........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       250 ~D~~~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          250 LDGHAK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             TTSCCC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             Cccccc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            997431 1    11222333444443                  3468888988 98888888665

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.96  E-value=1.1e-11  Score=98.92  Aligned_cols=133  Identities=13%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC------C-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch--------
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF------T-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI--------   80 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------   80 (217)
                      .+|+++|.+|+|||||+|+|++...      . ....+.++.  ....+.++.   .+.++||||......+        
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~--~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL--DLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec--ceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHH
Confidence            4799999999999999999988521      1 122233332  223344443   3889999996432211        


Q ss_pred             hhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEE
Q 027918           81 TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus        81 ~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                      ...+  ....+.++++++....-....+..    +......+.|+++++||.|..+  ........+.+.+..+..+.+.
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCSS
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCCC
Confidence            1111  356788888888743211111100    1112234689999999999754  2223344445555556544444


Q ss_pred             c
Q 027918          159 S  159 (217)
Q Consensus       159 S  159 (217)
                      +
T Consensus       310 ~  310 (368)
T 3h2y_A          310 T  310 (368)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.95  E-value=7.9e-10  Score=84.47  Aligned_cols=137  Identities=20%  Similarity=0.241  Sum_probs=69.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCC--------cccceeeeEEEEEEEEC--CeEEEEEEeeCCCcccccc-----
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTS--------FITTIGIDFKIRTIELD--GKRIKLQIWDTAGQERFRT-----   79 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~l~Dt~G~~~~~~-----   79 (217)
                      .++++|+|++|||||||++.|++......        ..+. ........+.+.  +....++++|++|......     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~-~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK-TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCC-CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc-ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            47999999999999999999987322111        0000 000111111122  2223789999998321100     


Q ss_pred             --h-------h--------------hhcccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           80 --I-------T--------------TAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        80 --~-------~--------------~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                        .       +              .-.+..+++.++++|... +-...+ ...+..+.   .. .++|+|++|.|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence              0       0              012234688888888542 212122 22333333   23 799999999996431


Q ss_pred             C-CccChHHHHHHHHHhCCeEEE
Q 027918          136 K-RAVPTSKGQALADEYGIKFFE  157 (217)
Q Consensus       136 ~-~~~~~~~~~~~~~~~~~~~~~  157 (217)
                      . .......+.......++.++.
T Consensus       156 ~e~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          156 EEKSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHHHcCccccC
Confidence            1 111122333334555666553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.89  E-value=1.5e-09  Score=86.67  Aligned_cols=97  Identities=23%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             CcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHH----HH
Q 027918           73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQA----LA  148 (217)
Q Consensus        73 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~----~~  148 (217)
                      .++.|++.+..++..++++++|+|+.++.+     .|...+.+... +.|+++|+||+|+.+.  ....+...+    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~--~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPR--SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCT--TCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCC--ccCHHHHHHHHHHHH
Confidence            467888889889899999999999998763     34444554444 6899999999998642  222233333    34


Q ss_pred             HHhCC---eEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          149 DEYGI---KFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       149 ~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ...+.   .++.+||++|.|++++++.|.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55565   789999999999999999886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.86  E-value=4.5e-09  Score=80.77  Aligned_cols=102  Identities=16%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             EeeCCCcc-cccchhhhcccCCcEEEEEEeCCChhhHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH
Q 027918           68 IWDTAGQE-RFRTITTAYYRGAMGILLVYDVTDESSFN--NIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG  144 (217)
Q Consensus        68 l~Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~  144 (217)
                      |-..||+. .........+..+|++++|+|+.++.+..  .+..|+        .+.|+++|+||+|+.+.   ...+..
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~---~~~~~~   71 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA---AVTQQW   71 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH---HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH---HHHHHH
Confidence            45678876 34455666789999999999999887654  233332        26899999999998641   112233


Q ss_pred             HHHHHHhCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          145 QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      .++....+.+++.+||+++.|++++++.+.+.+...
T Consensus        72 ~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           72 KEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            344445578999999999999999999888877644

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.81  E-value=5.7e-08  Score=78.26  Aligned_cols=159  Identities=13%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCc-ccceeeeE--EEEEEEECCeEEEEEEeeCCCcccccchhhh-----cccC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDF--KIRTIELDGKRIKLQIWDTAGQERFRTITTA-----YYRG   87 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~-----~~~~   87 (217)
                      ..|+|+|++|||||||+|.|.+....... ....+.+.  ........ ..-.+.++|++|..........     -+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            48999999999999999999984221110 00001000  01111111 1125889999985421111111     2233


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC--C----CCCccChH----HHHHHHH----HhC-
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD--E----SKRAVPTS----KGQALAD----EYG-  152 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~--~----~~~~~~~~----~~~~~~~----~~~-  152 (217)
                      .+..++ ++...... .+ ..+...+...   +.|+++|.||.|+.  +    .-......    .+..+..    +.+ 
T Consensus       149 ~~~~~~-lS~G~~~k-qr-v~la~aL~~~---~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~  222 (413)
T 1tq4_A          149 YDFFII-ISATRFKK-ND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI  222 (413)
T ss_dssp             CSEEEE-EESSCCCH-HH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cCCeEE-eCCCCccH-HH-HHHHHHHHhc---CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            454544 77652111 11 1122223332   57999999999952  1    01111222    2333321    222 


Q ss_pred             --CeEEEEcC--CCCCCHHHHHHHHHHHHHHHh
Q 027918          153 --IKFFETSA--KTNLNVEQVFFSIARDIKQRL  181 (217)
Q Consensus       153 --~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~~  181 (217)
                        ..++.+|+  .++.|++++.+.|.+.+.+..
T Consensus       223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence              36788899  667789999999887775444

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.63  E-value=3.6e-08  Score=75.74  Aligned_cols=58  Identities=28%  Similarity=0.351  Sum_probs=36.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      ...++|+++|.||+|||||+|+|.+.... ....+..+....  .+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            45689999999999999999999987643 333333333322  233333   68999999964

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.58  E-value=2.8e-07  Score=74.65  Aligned_cols=91  Identities=14%  Similarity=0.080  Sum_probs=54.3

Q ss_pred             EEEEEeeCCCcccccchh----h--hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|........    .  .....+|.+++|+|+......   ......+...   -.+..+|+||.|...   
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~---~~i~gVIlTKlD~~~---  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA---TPIGSIIVTKLDGSA---  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS---CTTEEEEEECCSSCS---
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh---CCCeEEEEECCCCcc---
Confidence            578899999954322111    1  122357899999999765432   2222333332   234578999999643   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918          138 AVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                        ..-.+..+....+.|+.+++.  |++++
T Consensus       254 --~gG~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 --KGGGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             --SHHHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             --cccHHHHHHHHHCCCEEEEEc--CCChH
Confidence              223445556667888887775  55554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.49  E-value=4.1e-08  Score=74.62  Aligned_cols=56  Identities=20%  Similarity=0.308  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      ++|+++|.+|+|||||+|+|.+.... ....+..+...  ..+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGI--QWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCS--CEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccce--EEEEeCC---CEEEEECCCccc
Confidence            69999999999999999999987653 22223222222  2222332   689999999764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.45  E-value=4.8e-07  Score=73.44  Aligned_cols=84  Identities=17%  Similarity=0.094  Sum_probs=48.8

Q ss_pred             EEEEEeeCCCcccccc-hh---h--hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRT-IT---T--AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-N-KVLVGNKADMDES  135 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~-~~---~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-p-vivv~nK~Dl~~~  135 (217)
                      ..+.|+||||...... +.   .  ..+..+|.+++|+|+.....   .......+..    .. | ..+|+||.|... 
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~~i~gvVlnK~D~~~-  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE----AVGEIGSIIVTKLDGSA-  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT----TSCSCEEEEEECSSSCS-
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh----cccCCeEEEEeCCCCcc-
Confidence            5789999999654221 11   1  12236899999999875532   2222222221    34 5 788999999632 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEc
Q 027918          136 KRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                          ....+..+....+.++.+++
T Consensus       253 ----~~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 ----KGGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             ----TTHHHHHHHHHSSCCEEEEC
T ss_pred             ----chHHHHHHHHHHCCCEEEee
Confidence                11233346666777776654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.33  E-value=2.6e-07  Score=70.17  Aligned_cols=91  Identities=13%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             CCCcccc-cchhhhcccCCcEEEEEEeCCChhhHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH
Q 027918           71 TAGQERF-RTITTAYYRGAMGILLVYDVTDESSFNN--IRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL  147 (217)
Q Consensus        71 t~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~  147 (217)
                      .|||... .......+.++|++++|+|+.++.+...  +. +       .  +.|.++|+||+|+.+.   ...+....+
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-l-------l--~k~~iivlNK~DL~~~---~~~~~~~~~   70 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-F-------S--RKETIILLNKVDIADE---KTTKKWVEF   70 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-C-------T--TSEEEEEEECGGGSCH---HHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-h-------c--CCCcEEEEECccCCCH---HHHHHHHHH
Confidence            4676532 2355667889999999999998866432  21 2       1  5899999999998652   112233344


Q ss_pred             HHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918          148 ADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      .+..+.++ .+||+++.|++++++.+..
T Consensus        71 ~~~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           71 FKKQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            55567888 9999999999999877644

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.30  E-value=7.9e-07  Score=72.00  Aligned_cols=91  Identities=14%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             EEEEEeeCCCccc--ccc----hhhh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           64 IKLQIWDTAGQER--FRT----ITTA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        64 ~~~~l~Dt~G~~~--~~~----~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      ..+.|+||||...  ...    ....  .....+.+++|+|+......   ......+....   .+..+|+||.|... 
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~~---~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQAS---PIGSVIITKMDGTA-  252 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHHC---SSEEEEEECGGGCS-
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhccc---CCcEEEEecccccc-
Confidence            5688999999543  111    1111  11246899999999765432   22233343332   35688999999632 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918          136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                          ..-.+..+....+.|+.+++.  |++++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence                233455566677899888875  65553

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.30  E-value=3.7e-07  Score=76.59  Aligned_cols=65  Identities=14%  Similarity=0.078  Sum_probs=40.1

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-Ccc--cceeeeEEEEEEEE-CCeEEEEEEeeCCCccc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFI--TTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~   76 (217)
                      ....+.|+|+|.+|+|||||+|+|++..... ...  ...+.....+.... ......+.|+||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3566899999999999999999999876321 111  11111121111111 11125799999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.21  E-value=7.6e-07  Score=68.97  Aligned_cols=90  Identities=12%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             cchhhhcccCCcEEEEEEeCCChhh-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHHHHHhCCeE
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESS-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQALADEYGIKF  155 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~  155 (217)
                      +.+.+..+.++|.+++|+|+.++.. ...+..++.....   .+.|.++|+||+||.++... ...+....+....+.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445557889999999999987654 3344444433332   36899999999998652110 01233344445567899


Q ss_pred             EEEcCCCCCCHHHHH
Q 027918          156 FETSAKTNLNVEQVF  170 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~  170 (217)
                      +.+|+.++.|+++++
T Consensus       154 ~~~sa~~~~g~~~L~  168 (307)
T 1t9h_A          154 YLTSSKDQDSLADII  168 (307)
T ss_dssp             EECCHHHHTTCTTTG
T ss_pred             EEEecCCCCCHHHHH
Confidence            999999888877553

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.15  E-value=5.8e-06  Score=70.11  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..|+|+|++|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            359999999999999999999863

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.15  E-value=6.6e-06  Score=64.98  Aligned_cols=85  Identities=16%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC
Q 027918           84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT  162 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (217)
                      ...++|.+++|.+.. +. +...+..++......   +.|.++|+||+||.++......+.........+.+++.+|+.+
T Consensus       127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            467899999886654 54 344455555444443   6788999999998652110001122233345678999999999


Q ss_pred             CCCHHHHHHH
Q 027918          163 NLNVEQVFFS  172 (217)
Q Consensus       163 ~~~i~~l~~~  172 (217)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999987654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.15  E-value=5.4e-06  Score=64.02  Aligned_cols=92  Identities=14%  Similarity=0.111  Sum_probs=55.9

Q ss_pred             EEEEEeeCCCccc--ccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918           64 IKLQIWDTAGQER--FRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  134 (217)
Q Consensus        64 ~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~  134 (217)
                      +.+.|+||||...  ... +..     .....+|.+++|+|+....   +.......+..    ..| ..+|+||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence            5789999999765  321 111     1234689999999986432   22222233332    245 678899999632


Q ss_pred             CCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                           ....+..+....+.++.+++  .|++++++
T Consensus       254 -----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          254 -----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence                 22345566777788887776  56666543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.00  E-value=3.6e-07  Score=75.18  Aligned_cols=109  Identities=13%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc--cccchh--------hh
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE--RFRTIT--------TA   83 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~~--------~~   83 (217)
                      ..+.|+++|.+||||||+.++|....... ...+.............+......+||..|..  ..+..+        ..
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999997542111 01111100000000001111345678988873  223333        45


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEE
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG  127 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~  127 (217)
                      ++...++.++|+|.++. +.+....|+..+...   +.+++++-
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~  156 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVE  156 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEE
Confidence            66667888999999987 455666677666654   33444443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.91  E-value=2e-05  Score=61.72  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             EEEEeeCCCcccccchh----hh--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc
Q 027918           65 KLQIWDTAGQERFRTIT----TA--YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA  138 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~  138 (217)
                      .+.++|++|........    ..  ..-..|-.+++.|.....   ++......+....   -.-++++||.|...    
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a----  282 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADA----  282 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCS----
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCcc----
Confidence            45679999964322211    11  112467888999976543   2333333444332   12378889999522    


Q ss_pred             cChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          139 VPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                       ..-.+.......+.|+.+++  +|++++++
T Consensus       283 -~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          283 -RGGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             -CCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             -chhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence             22335566777788888877  67666554

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.70  E-value=3.1e-05  Score=62.98  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+..-|.|+|++++|||+|+|.|++
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            3456699999999999999999986

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.55  E-value=4.6e-05  Score=54.27  Aligned_cols=23  Identities=30%  Similarity=0.755  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999998764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.39  E-value=8.8e-05  Score=52.80  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999863

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.39  E-value=0.0019  Score=52.47  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=45.6

Q ss_pred             EEEEEeeCCCcccccc-hhh-----hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRT-ITT-----AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESK  136 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~  136 (217)
                      +.+.|+||||...... ...     ......+.+++|+|+.....   .......+..    ..+ .-+|+||.|.... 
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~----~l~i~gvVlnK~D~~~~-  255 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE----ALPLTGVVLTKVDGDAR-  255 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH----HSCCCCEEEECTTSSSC-
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc----cCCCeEEEEecCCCCcc-
Confidence            5789999999654321 111     12346788999999875432   2222223332    234 3478999996321 


Q ss_pred             CccChHHHHHHHHHhCCeEEEE
Q 027918          137 RAVPTSKGQALADEYGIKFFET  158 (217)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~  158 (217)
                      .    ..+..+....+.|+.++
T Consensus       256 ~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C----THHHHHHHHHCCCEEEE
T ss_pred             H----HHHHHHHHHHCCCeEEE
Confidence            1    23335555566554433

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.36  E-value=9.9e-05  Score=53.42  Aligned_cols=21  Identities=43%  Similarity=0.638  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+|++|||||||++.|.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999999976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.27  E-value=0.00015  Score=52.51  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.26  E-value=0.00014  Score=51.94  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|+|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36999999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.22  E-value=0.00017  Score=52.47  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.21  E-value=0.00032  Score=50.70  Aligned_cols=34  Identities=15%  Similarity=0.290  Sum_probs=24.0

Q ss_pred             CcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918            4 PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus         4 ~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +...|.........|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A            4 TTSQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             ----CCSCTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3334444444556899999999999999999874

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.20  E-value=0.00019  Score=52.87  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.|.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.19  E-value=0.00019  Score=52.72  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.|.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.16  E-value=0.00022  Score=51.46  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      --|+|+|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35899999999999999999864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.15  E-value=0.00022  Score=50.32  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~   36 (217)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58999999999999999754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.13  E-value=0.00026  Score=49.34  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++++|+.|||||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999998753

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.12  E-value=0.00025  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999999875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.11  E-value=0.00025  Score=52.79  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999874

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.10  E-value=0.0003  Score=50.33  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+||+|||||||+++|...
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.09  E-value=0.00031  Score=51.11  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ....|+|+|++|||||||++.|.+.
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.08  E-value=0.00031  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|+|+|++||||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999999864

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.06  E-value=0.00031  Score=50.17  Aligned_cols=21  Identities=33%  Similarity=0.540  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|+|++|||||||++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.04  E-value=0.00033  Score=50.76  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.|...
T Consensus        14 ~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           14 PLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.04  E-value=0.00035  Score=52.15  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999984

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.04  E-value=0.0003  Score=51.97  Aligned_cols=22  Identities=41%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.04  E-value=0.00033  Score=50.63  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..|+|+|++||||||+++.|.+..
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            469999999999999999998754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.02  E-value=0.0004  Score=50.51  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|++|||||||++.|.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.01  E-value=0.00037  Score=50.35  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|+|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.01  E-value=0.00041  Score=48.59  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027918           16 IKLLLIGDSGVGKSCLLLRF   35 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l   35 (217)
                      +-|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.00  E-value=0.00045  Score=51.19  Aligned_cols=30  Identities=17%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      |.........|+|+|.+||||||+.+.|..
T Consensus         9 p~~~~~~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A            9 PVPESPKGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             -----CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            333334446899999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.00  E-value=0.00038  Score=51.03  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.00  E-value=0.00037  Score=50.07  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999998763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.99  E-value=0.00045  Score=51.61  Aligned_cols=21  Identities=24%  Similarity=0.616  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 027918           16 IKLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~   36 (217)
                      ..|+|+|++|||||||++.|.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999998

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.99  E-value=0.00038  Score=52.67  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|+.|||||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999874

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.98  E-value=0.00038  Score=53.03  Aligned_cols=22  Identities=36%  Similarity=0.587  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|+.|||||||++.+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.98  E-value=0.00041  Score=54.80  Aligned_cols=24  Identities=38%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      .++|+|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999998543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.98  E-value=0.00041  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.98  E-value=0.00045  Score=50.41  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.97  E-value=0.00045  Score=48.70  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.96  E-value=0.00041  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.96  E-value=0.00048  Score=50.30  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999964

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.96  E-value=0.00042  Score=52.57  Aligned_cols=22  Identities=36%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5889999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.95  E-value=0.00041  Score=52.31  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.95  E-value=0.00051  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|+|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999875

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.93  E-value=0.00046  Score=51.12  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.93  E-value=0.00046  Score=52.25  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5889999999999999999874

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.93  E-value=0.00045  Score=51.78  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.92  E-value=0.00052  Score=51.33  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00047  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00048  Score=51.93  Aligned_cols=22  Identities=36%  Similarity=0.375  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.91  E-value=0.00049  Score=52.03  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+|++|||||||++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            689999999999999999876

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.91  E-value=0.00051  Score=48.34  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|++||||||+.+.|.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.91  E-value=0.00049  Score=51.63  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999874

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.91  E-value=0.00053  Score=51.51  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999985

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.89  E-value=0.00055  Score=51.92  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.00055  Score=49.46  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|+|+|.+||||||+.+.|...
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.88  E-value=0.00078  Score=48.59  Aligned_cols=25  Identities=24%  Similarity=0.618  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...+.|+|+|.+||||||+.+.|..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4446899999999999999999865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.88  E-value=0.00055  Score=49.46  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999987

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.88  E-value=0.00051  Score=48.65  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.87  E-value=0.00061  Score=49.05  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999876

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.87  E-value=0.00064  Score=49.06  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|+|+|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.87  E-value=0.00058  Score=52.75  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|+|||||++.|.+-
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhhh
Confidence            7999999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.87  E-value=0.00054  Score=51.78  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999874

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.87  E-value=0.00055  Score=52.30  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.87  E-value=0.00038  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.86  E-value=0.00064  Score=47.92  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|.|++||||||+.+.|...
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.86  E-value=0.00075  Score=48.04  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            358999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.86  E-value=0.00063  Score=48.16  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-++|+|++|+|||||+++|...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46899999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.86  E-value=0.00055  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.86  E-value=0.00076  Score=48.83  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999976

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.85  E-value=0.00061  Score=49.19  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      --|+|+|++||||||+.+.|.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988763

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.84  E-value=0.00058  Score=51.39  Aligned_cols=22  Identities=36%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.83  E-value=0.00068  Score=49.80  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.82  E-value=0.00062  Score=51.62  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.81  E-value=0.00041  Score=51.29  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHH-cC
Q 027918           17 KLLLIGDSGVGKSCLLLRFS-DG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~-~~   38 (217)
                      -|+|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999999 64

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.81  E-value=0.00081  Score=47.89  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.80  E-value=0.00069  Score=49.43  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.79  E-value=0.0019  Score=43.95  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            46999999999999999988764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.79  E-value=0.00095  Score=47.36  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+++|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999874

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.78  E-value=0.0007  Score=52.55  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ....-|+|+|++|||||||++.|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4446899999999999999999876

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.76  E-value=0.00082  Score=50.86  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|+.|||||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.76  E-value=0.00069  Score=49.76  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.76  E-value=0.00066  Score=52.41  Aligned_cols=23  Identities=43%  Similarity=0.486  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++++|++|+|||||+|.|.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.76  E-value=0.0009  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999865

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.75  E-value=0.00027  Score=54.69  Aligned_cols=23  Identities=43%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|++|+|||||+|.|.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            78999999999999999998743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.74  E-value=0.0011  Score=49.46  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+.|+|+|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999964

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.74  E-value=0.001  Score=47.39  Aligned_cols=22  Identities=18%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.74  E-value=0.0013  Score=47.56  Aligned_cols=26  Identities=15%  Similarity=0.161  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .....|+|+|++||||||+.+.|...
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            33467999999999999999999874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.73  E-value=0.001  Score=47.22  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.72  E-value=0.00045  Score=48.75  Aligned_cols=22  Identities=32%  Similarity=0.450  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|.|+|++|||||||++.|.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999873

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.72  E-value=0.00082  Score=53.34  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-+++|+|++|||||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999874

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.71  E-value=0.001  Score=48.66  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|+|.+||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999865

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.70  E-value=0.0011  Score=46.21  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.70  E-value=0.0009  Score=51.69  Aligned_cols=20  Identities=50%  Similarity=0.758  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~   36 (217)
                      .++++|++|+|||||+|.|.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57999999999999999998

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.0028  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.69  E-value=0.00066  Score=52.50  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.|.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999999873

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.67  E-value=0.0012  Score=49.31  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=21.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ....-|.|+|+.|||||||++.|.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999999876

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.67  E-value=0.0011  Score=48.95  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ....-|+|.|+.|||||||++.|.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34467999999999999999999875

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.67  E-value=0.0009  Score=52.86  Aligned_cols=23  Identities=39%  Similarity=0.557  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++|+|++|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            57899999999999999999843

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.66  E-value=0.00098  Score=50.74  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999999873

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.65  E-value=0.0011  Score=46.72  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+|+|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.64  E-value=0.0014  Score=47.48  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.64  E-value=0.0012  Score=48.54  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|.|.+||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.63  E-value=0.0014  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.63  E-value=0.0011  Score=52.37  Aligned_cols=22  Identities=32%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.+.+-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999999874

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.63  E-value=0.0011  Score=52.45  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            5789999999999999999874

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.63  E-value=0.00093  Score=51.30  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.63  E-value=0.001  Score=52.61  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|+|++|||||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999876

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.60  E-value=0.0048  Score=48.37  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998876

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.60  E-value=0.0012  Score=52.29  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            5789999999999999999884

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.60  E-value=0.0011  Score=51.20  Aligned_cols=84  Identities=14%  Similarity=0.063  Sum_probs=45.6

Q ss_pred             EEEEeeCCCcccccc------------hhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027918           65 KLQIWDTAGQERFRT------------ITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  132 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl  132 (217)
                      .+.++|++|......            ..+......+.++++.|.......   ...+..+....  + ..++++||.|.
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~--~-~t~iivTh~d~  259 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV--G-LTGVIVTKLDG  259 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH--C-CSEEEEECTTS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc--C-CcEEEEECCcc
Confidence            456889999542211            111233456778889998765432   22233333322  2 24778999885


Q ss_pred             CCCCCccChHHHHHHHHHhCCeEEEEc
Q 027918          133 DESKRAVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                      ..     ..-.+.......+.|+.++.
T Consensus       260 ~a-----~gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          260 TA-----KGGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             SC-----CCTTHHHHHHHHCCCEEEEE
T ss_pred             cc-----cccHHHHHHHHHCCCeEEEe
Confidence            32     11233455666777776665

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.60  E-value=0.002  Score=47.20  Aligned_cols=20  Identities=20%  Similarity=0.509  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67799999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.60  E-value=0.0012  Score=52.55  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            57899999999999999999843

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.59  E-value=0.0012  Score=52.25  Aligned_cols=22  Identities=41%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|++|||||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            5789999999999999999884

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.59  E-value=0.0012  Score=48.52  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.57  E-value=0.0021  Score=45.69  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...|+|+|.+||||||+.+.|..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.57  E-value=0.0012  Score=50.94  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .--|+++|+.||||||+++.|.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34689999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.57  E-value=0.0014  Score=46.10  Aligned_cols=22  Identities=18%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|.|+|.+|||||||+.+|..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.56  E-value=0.0014  Score=46.29  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|.+||||||+.+.|..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4699999999999999999874

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.56  E-value=0.0013  Score=49.27  Aligned_cols=21  Identities=38%  Similarity=0.631  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999999874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.55  E-value=0.0013  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++|+|++|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999999999853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.55  E-value=0.0013  Score=52.19  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|||||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999999874

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.54  E-value=0.0021  Score=45.74  Aligned_cols=22  Identities=18%  Similarity=0.335  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.54  E-value=0.00082  Score=46.24  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|+|||+|++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6889999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.52  E-value=0.0012  Score=48.35  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.52  E-value=0.0014  Score=49.24  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.52  E-value=0.0016  Score=45.93  Aligned_cols=23  Identities=30%  Similarity=0.592  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988764

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.51  E-value=0.0017  Score=46.77  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|+|.|.+||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999875

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.51  E-value=0.0015  Score=47.73  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|+|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.50  E-value=0.0016  Score=46.37  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.49  E-value=0.0018  Score=49.57  Aligned_cols=23  Identities=30%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..-|+|.|++||||||+.+.|..
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999975

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.49  E-value=0.0011  Score=52.25  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|++|||||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            5889999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.49  E-value=0.0013  Score=52.06  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|||||||++.|.+-
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.48  E-value=0.0015  Score=51.91  Aligned_cols=21  Identities=33%  Similarity=0.556  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|+|++|||||||++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            699999999999999999976

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.47  E-value=0.0014  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..-|+|+|++|||||||++.|.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999886

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.47  E-value=0.0017  Score=46.32  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.46  E-value=0.0023  Score=49.12  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=21.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .....|+|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999988754

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.46  E-value=0.00063  Score=49.45  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|.|.+||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.46  E-value=0.0021  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.217  Sum_probs=21.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...-|+|+|++|||||||++.|.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.45  E-value=0.002  Score=46.27  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...|+|+|.+||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999999875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.45  E-value=0.0023  Score=49.75  Aligned_cols=25  Identities=20%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...+-|+|+|++|||||||++.|..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457799999999999999998854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.45  E-value=0.0013  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.45  E-value=0.0019  Score=48.42  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 027918           16 IKLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~   36 (217)
                      ..|+|+|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999998

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.42  E-value=0.002  Score=45.04  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.40  E-value=0.004  Score=47.48  Aligned_cols=24  Identities=42%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+.|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999999873

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.40  E-value=0.0017  Score=52.45  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999873

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.39  E-value=0.002  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.39  E-value=0.0018  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.39  E-value=0.0024  Score=48.15  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999999875

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.39  E-value=0.0025  Score=46.49  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+.|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999999975

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.39  E-value=0.0019  Score=47.37  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999999875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.39  E-value=0.0021  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...|+|.|.+||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.38  E-value=0.0019  Score=49.13  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3999999999999999999874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.38  E-value=0.002  Score=45.43  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.37  E-value=0.0016  Score=48.87  Aligned_cols=25  Identities=32%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .....|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3346899999999999999999875

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.37  E-value=0.0077  Score=48.92  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=20.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHH
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~   36 (217)
                      .+..-|.|+|+.++|||+|+|.|+
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            455668899999999999999654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.37  E-value=0.0018  Score=51.80  Aligned_cols=22  Identities=41%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999999873

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.36  E-value=0.002  Score=46.60  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.36  E-value=0.0011  Score=52.42  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999999843

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.35  E-value=0.0026  Score=44.38  Aligned_cols=22  Identities=41%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|+|.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.35  E-value=0.0022  Score=45.40  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|+|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998865

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.35  E-value=0.002  Score=50.96  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .--|+++|+.||||||+++.|.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34699999999999999999865

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.32  E-value=0.0019  Score=53.55  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .|+|+|++|||||||++.+++-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            59999999999999999998743

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.28  E-value=0.0036  Score=44.94  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=22.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...+.|.|+|.+||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            45688999999999999999998763

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.28  E-value=0.0022  Score=52.68  Aligned_cols=93  Identities=16%  Similarity=0.156  Sum_probs=49.7

Q ss_pred             EEEEEeeCCCcccccchh----hh-------c-ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTIT----TA-------Y-YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~----~~-------~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      +.+.|+||+|........    ..       + ....+-+++++|+......   ......+....  + ...+|+||.|
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~a---l~~ak~f~~~~--~-itgvIlTKLD  449 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA---VSQAKLFHEAV--G-LTGITLTKLD  449 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHH---HHHHHHHHHHT--C-CSEEEEECGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHH---HHHHHHHHhhc--C-CCEEEEEcCC
Confidence            457789999964322111    11       1 1124568889998655321   12233333322  2 2367899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      -..     ..-.+..+....+.++.++.  +|.+++++
T Consensus       450 ~ta-----kgG~~lsi~~~~~~PI~fig--~Ge~vdDL  480 (503)
T 2yhs_A          450 GTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL  480 (503)
T ss_dssp             GCS-----CCTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             Ccc-----cccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence            421     22345566677787776643  45555544

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.28  E-value=0.003  Score=46.38  Aligned_cols=150  Identities=17%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             EEEEE--cCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEe-eCCCc-ccc-cchh----hhcccC
Q 027918           17 KLLLI--GDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW-DTAGQ-ERF-RTIT----TAYYRG   87 (217)
Q Consensus        17 ~I~v~--G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Dt~G~-~~~-~~~~----~~~~~~   87 (217)
                      ||+|+  |.++.|||+|++++++.....  ..    ......+.-+.....+-|| |.-.. ... ..+.    .....-
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~~~~--~~----i~k~v~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~v  102 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCSSTG--IS----IVKDQTWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRNV  102 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCCCCS--SC----EEEEEEEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHHT
T ss_pred             ceEEEecCcccccHHHHHHHHhcccccc--cc----cccCCeeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHHh
Confidence            45555  999999999999999863222  11    1112223333334455543 33211 110 0111    111123


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHH---HHHhCCeEEEEcCC---
Q 027918           88 AMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQAL---ADEYGIKFFETSAK---  161 (217)
Q Consensus        88 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~---  161 (217)
                      ..++|+|++...+...+.+..   .+. -...+..+++|+.-.+.    .....+...+.   +..+++.|+.....   
T Consensus       103 iggII~~f~~p~~~~~~~i~~---~~~-~~~~dg~~v~Vg~~~~~----~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~  174 (233)
T 3uc9_A          103 MAGIILITDIRQTKPQELLHQ---FMI-AAHRNTFVVLVNVNEEV----EQDEIDELNEIWSNAFTNVIEFVNWKRSKPT  174 (233)
T ss_dssp             EEEEEEEECHHHHCGGGTHHH---HHH-HSCTTCEEEEEECCTTC----CHHHHHHHHHHHTTSSSSCEEEEECC----C
T ss_pred             cceEEEEEeCCCcchHHHHHH---Hhc-cCCCCceEEEEecCCcc----CCCchhhHHHHHHHHHhcCeEEEEecCCCcc
Confidence            477899998654443333332   222 22223334444432221    11111222222   22346677765331   


Q ss_pred             -------CCCCHHHHHHHHHHHHHHH
Q 027918          162 -------TNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       162 -------~~~~i~~l~~~l~~~~~~~  180 (217)
                             +..|++.+.+.|-....+.
T Consensus       175 ~~~ne~gE~~Gi~RI~E~Le~h~W~~  200 (233)
T 3uc9_A          175 VNHNDYGEKLGLDRIQEIIDTHDWLN  200 (233)
T ss_dssp             CCBCTTSCBCHHHHHHHHHHHCCCTT
T ss_pred             cccccccchhCHHHHHHHHHhCCCCC
Confidence                   2346778777777666544

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.27  E-value=0.0016  Score=46.05  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=15.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..|+|.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999974

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.27  E-value=0.0024  Score=47.86  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|+++|++|+|||+|++.+.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            36999999999999999999863

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.25  E-value=0.002  Score=45.36  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|+|.|++|+|||+|++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988763

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.22  E-value=0.0033  Score=47.04  Aligned_cols=25  Identities=16%  Similarity=0.197  Sum_probs=21.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998865

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.22  E-value=0.0024  Score=47.88  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|+|+|++||||||+.+.|..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999865

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.22  E-value=0.0023  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0022  Score=52.44  Aligned_cols=23  Identities=22%  Similarity=0.392  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|+|+.|||||||++.|.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            37999999999999999999874

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.21  E-value=0.0026  Score=50.10  Aligned_cols=23  Identities=39%  Similarity=0.611  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ++.|+|++|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            79999999999999999999853

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.20  E-value=0.0028  Score=46.08  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|+|.+||||||+.+.|..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.20  E-value=0.0028  Score=46.82  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..-|+|.|++||||||+++.|...
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.19  E-value=0.003  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.++|.|++|+|||+|++.+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998875

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.19  E-value=0.0032  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=20.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+.|+|.|++||||||+.+.|..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999874

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.16  E-value=0.0025  Score=49.53  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..-++|+|+.|||||||++.|.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            345789999999999999999965

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.16  E-value=0.003  Score=45.93  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.16  E-value=0.012  Score=42.19  Aligned_cols=85  Identities=15%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccCh
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPT  141 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~~  141 (217)
                      +.+.|+|+|+..  .......+..+|.+++++..+...  ..+..+++.+....  ..+.++.+|+|+.|..    ....
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~----~~~~  147 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM----ATML  147 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT----EEEE
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC----chHH
Confidence            578999999865  334455667799999999886544  66666666666543  2346778999999842    1223


Q ss_pred             HHHHHHHHHhCCeEE
Q 027918          142 SKGQALADEYGIKFF  156 (217)
Q Consensus       142 ~~~~~~~~~~~~~~~  156 (217)
                      .+..++....+.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            444555555665544

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.15  E-value=0.003  Score=46.66  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|+|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999874

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.15  E-value=0.0034  Score=45.15  Aligned_cols=23  Identities=39%  Similarity=0.543  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|++.|++|+|||+|+..+.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988763

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.15  E-value=0.0031  Score=44.57  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998854

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.07  E-value=0.0028  Score=45.92  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+++.|+||+|||+++..+.+
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.02  E-value=0.0039  Score=47.86  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|.|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999975

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.99  E-value=0.0044  Score=42.21  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..|++.|++|+|||++.+.+....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            469999999999999999998743

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.98  E-value=0.0038  Score=49.71  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|+|+|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3789999999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.98  E-value=0.0042  Score=51.86  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|+.|||||||++.+.+-
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999884

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.91  E-value=0.0042  Score=50.49  Aligned_cols=23  Identities=39%  Similarity=0.475  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      +++|+|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            79999999999999999998853

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.91  E-value=0.0042  Score=47.49  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            47999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.91  E-value=0.004  Score=51.95  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|+.|||||||++.|.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5889999999999999999884

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.90  E-value=0.0043  Score=50.92  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999999866

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.89  E-value=0.0046  Score=45.24  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.88  E-value=0.0048  Score=46.16  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...|++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999999976

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.86  E-value=0.0057  Score=45.14  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...+++.|+|+|||||||+...|..
T Consensus         6 ~~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            6 HHHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccccceeeECCCCCCHHHHHHHHHH
Confidence            3568999999999999999998854

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.0047  Score=52.30  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|+|||||++.|.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999999874

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.85  E-value=0.0052  Score=46.68  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.+++.|++|+|||+|++.+.+.
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.85  E-value=0.0047  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.83  E-value=0.0061  Score=41.82  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027918           18 LLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~   36 (217)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999874

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.80  E-value=0.0047  Score=52.13  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999999874

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.79  E-value=0.0054  Score=51.77  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.79  E-value=0.0048  Score=46.90  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.72  E-value=0.006  Score=43.92  Aligned_cols=24  Identities=42%  Similarity=0.631  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .-|+|+|++|+|||+|...|....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.70  E-value=0.0067  Score=46.51  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-+++.|+||+|||+|++.+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46788899999999999999764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.69  E-value=0.0056  Score=47.11  Aligned_cols=85  Identities=13%  Similarity=0.088  Sum_probs=47.1

Q ss_pred             EEEEEeeCCCcccccch----hhhccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|.......    ....+.  ..+.+++|+|++..  ...+..+...+..   .+ ..-+|+||.|...   
T Consensus       183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~---  253 (296)
T 2px0_A          183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETT---  253 (296)
T ss_dssp             SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCS---
T ss_pred             CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCccc---
Confidence            47899999996643321    112222  35677888887643  2334443332221   11 2356679999632   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEc
Q 027918          138 AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                        ....+.......+.++..++
T Consensus       254 --~~g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          254 --SLGSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             --CCHHHHHHHHTCSCCCSEEC
T ss_pred             --chhHHHHHHHHHCcCEEEEE
Confidence              12355566677777765554

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.68  E-value=0.0059  Score=47.40  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|.|++|+|||+|++.+.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999998763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.66  E-value=0.0062  Score=51.57  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|+|||||++.|.+.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999999874

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.66  E-value=0.0067  Score=43.65  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|.+||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.65  E-value=0.0064  Score=46.70  Aligned_cols=23  Identities=22%  Similarity=0.593  Sum_probs=19.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...|++.|++|+|||+|++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999986654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.65  E-value=0.0044  Score=46.65  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+...|+|.|.+||||||+++.|...
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34578999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.65  E-value=0.0062  Score=49.17  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-|+++|.+||||||+.+.|...
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            45889999999999999999763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.65  E-value=0.0076  Score=44.58  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ....|+|+|.+||||||+.+.|..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.64  E-value=0.012  Score=45.55  Aligned_cols=93  Identities=22%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             EEEEEeeCCCcccccchh-------hhc-----ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTIT-------TAY-----YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.|+|+||........       ...     ....+.+++|+|.....  +.+.. ...+....  + ..-+|+||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~~--~-i~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEAV--N-VTGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHHS--C-CCEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhcC--C-CCEEEEeCCC
Confidence            468899999953222111       111     12478889999986432  22222 22233221  1 2356789999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ...     ..-.+..+....+.|+.++..  |+.++++
T Consensus       261 ~~~-----~gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl  291 (306)
T 1vma_A          261 GTA-----KGGITLAIARELGIPIKFIGV--GEKAEDL  291 (306)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred             Ccc-----chHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence            532     223466777888888777654  3444443

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.62  E-value=0.01  Score=44.83  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34467999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.61  E-value=0.0062  Score=50.83  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|+.|||||||++.|.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998843

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.60  E-value=0.0075  Score=50.36  Aligned_cols=23  Identities=17%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|+.|||||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.59  E-value=0.0068  Score=51.33  Aligned_cols=23  Identities=17%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .++|+|+.|+|||||++.|.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999843

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.56  E-value=0.0075  Score=47.81  Aligned_cols=19  Identities=37%  Similarity=0.545  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027918           18 LLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~   36 (217)
                      .+|+|+.|||||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999876

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.56  E-value=0.0073  Score=44.64  Aligned_cols=21  Identities=33%  Similarity=0.472  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|+|++|+|||||+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999877754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.54  E-value=0.0074  Score=48.81  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      --|++.|+||+|||+|++.+.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999999873

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.53  E-value=0.0092  Score=46.93  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+|+++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999999987754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.51  E-value=0.0078  Score=46.11  Aligned_cols=23  Identities=35%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..+++.|++|+|||++++.+...
T Consensus        51 ~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998763

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.0076  Score=48.81  Aligned_cols=25  Identities=24%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..-.|++.|+||+|||+|++.+.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHH
Confidence            3447999999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.48  E-value=0.0071  Score=47.63  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.|+|++|+|||||+..++..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.48  E-value=0.0077  Score=46.85  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|++.|++|+|||+|++.+.+.
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            47999999999999999999874

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.48  E-value=0.0072  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|.|++|+|||+|++.+.+.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998763

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.47  E-value=0.0054  Score=51.93  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|||||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            7899999999999999999874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.0082  Score=50.85  Aligned_cols=22  Identities=27%  Similarity=0.649  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ++|+|+.|+|||||++.+.+-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSS
T ss_pred             EEEECCCCCcHHHHHHHHhcCC
Confidence            7999999999999999998853

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.45  E-value=0.0085  Score=46.56  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..|+|+|++|||||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999763

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.0084  Score=48.59  Aligned_cols=25  Identities=28%  Similarity=0.309  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..--|++.|+||+|||+|++.+.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3347999999999999999999874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.41  E-value=0.0083  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.41  E-value=0.0047  Score=52.05  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|||||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999988874

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.41  E-value=0.013  Score=44.90  Aligned_cols=23  Identities=30%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++++|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999998763

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.40  E-value=0.0095  Score=47.16  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|.|++|+|||+|++.+.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.37  E-value=0.0096  Score=46.23  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...|++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.37  E-value=0.01  Score=46.34  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.36  E-value=0.0097  Score=46.57  Aligned_cols=22  Identities=18%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3689999999999999999875

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.34  E-value=0.011  Score=41.90  Aligned_cols=21  Identities=24%  Similarity=0.279  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+|.++||||+|..+|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.31  E-value=0.0064  Score=51.36  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++|++|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999873

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.0098  Score=47.62  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .--|++.|+||+|||.|++.+.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            346999999999999999999873

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.28  E-value=0.06  Score=41.59  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      +++.|++|+|||++++.+...
T Consensus        51 ~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHH
Confidence            455566999999999999764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.24  E-value=0.012  Score=45.55  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|+|++|||||+|...|...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4889999999999999999864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.23  E-value=0.0047  Score=46.51  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|++.|++|+|||+|++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999999763

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.19  E-value=0.011  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999998764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.16  E-value=0.013  Score=45.33  Aligned_cols=23  Identities=43%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.+++.|++|+|||+|+..+...
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.14  E-value=0.12  Score=37.29  Aligned_cols=85  Identities=12%  Similarity=0.081  Sum_probs=54.2

Q ss_pred             EEEEEeeCCCc-ccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH
Q 027918           64 IKLQIWDTAGQ-ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS  142 (217)
Q Consensus        64 ~~~~l~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~  142 (217)
                      +.+.|+|+|+. ..  ......+..+|.+|+++..+ ..+...+..+++.+....  +.++.+|+|+.|-..   .....
T Consensus        68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~---~~~~~  139 (209)
T 3cwq_A           68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYP---SKDGD  139 (209)
T ss_dssp             CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTT---SCHHH
T ss_pred             CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCcc---chHHH
Confidence            57889999986 32  23445667899988888875 455666666776676533  467889999998421   01233


Q ss_pred             HHHHHHHHhCCeEE
Q 027918          143 KGQALADEYGIKFF  156 (217)
Q Consensus       143 ~~~~~~~~~~~~~~  156 (217)
                      +..++.++.+.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            44455555665544

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.13  E-value=0.013  Score=45.17  Aligned_cols=23  Identities=22%  Similarity=0.455  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-|+|+|++|||||+|...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            35889999999999999999763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.12  E-value=0.01  Score=46.91  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|.|++|+|||+|++.+...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998763

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.12  E-value=0.015  Score=40.93  Aligned_cols=24  Identities=33%  Similarity=0.583  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      .=|++.|++|+|||||.-.|....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.12  E-value=0.014  Score=42.62  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|.|.+||||||+++.|..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.11  E-value=0.0095  Score=46.24  Aligned_cols=24  Identities=13%  Similarity=-0.015  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...++|.|+||+|||++++.++..
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.10  E-value=0.015  Score=43.00  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-|+|.|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999764

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.09  E-value=0.012  Score=46.37  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.09  E-value=0.0083  Score=50.19  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|+|+|++|||||||++.|.+.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHh
Confidence            57999999999999999998764

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.07  E-value=0.012  Score=48.64  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.06  E-value=0.013  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.625  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|.|++|+|||+|++.+...
T Consensus        72 ~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998753

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.06  E-value=0.013  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .--|++.|+||+|||+|++.+.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            346999999999999999999874

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.04  E-value=0.013  Score=48.14  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+++|++|+|||+|++.+.+.
T Consensus        51 gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           51 GILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999873

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.04  E-value=0.014  Score=43.87  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      ..|+|.|++|+|||+|++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            479999999999999999998653

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.01  E-value=0.012  Score=49.12  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..++++|++|+|||||++.+.+.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36999999999999999998763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.01  E-value=0.016  Score=51.67  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      .++|+|+.|+|||||++.+.++.+
T Consensus       463 ~v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          463 RYGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            589999999999999999996544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.01  E-value=0.012  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.549  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+++++|+||+|||++++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999988653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.00  E-value=0.016  Score=41.89  Aligned_cols=19  Identities=47%  Similarity=0.635  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027918           18 LLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~   36 (217)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	217
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-62
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-58
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-56
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-56
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-55
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-53
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	3e-53
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	9e-53
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-51
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	9e-51
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-50
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	9e-48
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-45
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-44
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-43
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-42
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-42
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	6e-42
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-40
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-40
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-39
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	5e-39
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-39
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-38
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-38
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	8e-38
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-37
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-37
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	5e-37
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-36
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-36
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-35
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-35
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-35
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-34
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-34
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-34
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-34
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-34
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	4e-30
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	8e-30
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	4e-29
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-29
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-28
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-28
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-28
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	9e-28
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-26
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-26
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-26
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-25
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-25
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	8e-22
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-21
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-20
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-16
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-11
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	5e-09
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-07
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	2e-06
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	4e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	7e-06
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	8e-06
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	1e-05
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	4e-05
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	5e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	8e-05
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	3e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	0.001
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  190 bits (484), Expect = 1e-62
 Identities = 122/170 (71%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD L KLLLIGDSGVGK+C+L RFS+ +F ++FI+TIGIDFKIRTIELDGKRIKLQIWDT
Sbjct: 3   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD 122

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct: 123 VND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  180 bits (457), Expect = 1e-58
 Identities = 101/167 (60%), Positives = 137/167 (82%), Gaps = 2/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           ++K+LLIGDSGVGKSCLL+RF +  F  SFITTIGIDFKI+T++++GK++KLQIWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           ERFRTITTAYYRGAMGI+LVYD+TDE +F NI+ W + + +HA+D    +LVGNK+DM+ 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME- 120

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
             R V   +G+ALA E GI F E+SAK + NV ++FF++A+ I++++
Sbjct: 121 -TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (440), Expect = 6e-56
 Identities = 81/167 (48%), Positives = 117/167 (70%), Gaps = 1/167 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           DYD L K++LIG++GVGK+CL+ RF+ G F      TIG+DF I+T+E++G+++KLQIWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQERFR+IT +YYR A  ++L YD+T E SF  +  W+R IEQ+AS+ V  VLVGNK 
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           D    +R V   + +  ++   + + ETSAK + NVE++F  +A  +
Sbjct: 121 D-LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (438), Expect = 9e-56
 Identities = 87/170 (51%), Positives = 128/170 (75%), Gaps = 2/170 (1%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIW 69
            YD   K++L+GDSGVGK+CLL+RF DG+F   +FI+T+GIDF+ + +++DG ++KLQ+W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
           DTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK 121

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
                 +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++K+
Sbjct: 122 -VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  171 bits (435), Expect = 5e-55
 Identities = 99/192 (51%), Positives = 138/192 (71%), Gaps = 7/192 (3%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           ++YD L KLLLIG+SGVGKSCLLLRFSD ++T  +I+TIG+DFKI+T+ELDGK +KLQIW
Sbjct: 1   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNK 129
           DTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK
Sbjct: 61  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD------ 183
               + KR V     +  AD   + F ETSA  + NVE  F ++AR IK+ ++       
Sbjct: 121 -CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 184 TDSRSEPSTIKI 195
           T  + +   + +
Sbjct: 180 TQKKEDKGNVNL 191

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 1e-53
 Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 1/166 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y  + K ++IGD GVGKSCLL +F++  F      TIG++F  R IE+ G++IKLQIWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFR +T +YYRGA G L+VYD+T  S++N++ +W+ +     + N   +L+GNKAD
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           + E++R V   + +  A+E G+ F E SAKT  NVE  F   A+ I
Sbjct: 121 L-EAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  166 bits (421), Expect = 3e-53
 Identities = 91/170 (53%), Positives = 129/170 (75%), Gaps = 1/170 (0%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
           ++D + K+L+IG+S VGK+  L R++D SFT +F++T+GIDFK++TI  + KRIKLQIWD
Sbjct: 1   NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

Query: 71  TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKA 130
           TAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK 
Sbjct: 61  TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           DM E +R V + +G+ LAD  G +FFE SAK N+NV+Q F  +   I ++
Sbjct: 121 DM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (419), Expect = 9e-53
 Identities = 84/170 (49%), Positives = 118/170 (69%), Gaps = 1/170 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD L K++LIGDSGVGKS LL RF+   F     +TIG++F  R+I++DGK IK QIWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           +    RAVPT + +A A++  + F ETSA  + NVE+ F +I  +I + +
Sbjct: 121 LRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  161 bits (409), Expect = 4e-51
 Identities = 83/182 (45%), Positives = 120/182 (65%), Gaps = 12/182 (6%)

Query: 11  DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL----------D 60
           DYD LIKLL +GDSGVGK+  L R++D  F   FITT+GIDF+ + +             
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASD 119
             ++ LQ+WDTAGQERFR++TTA++R AMG LL++D+T + SF N+RNW+  ++ +   +
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 120 NVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           N + VL+GNKAD    +R V   + + LAD+YGI +FETSA T  NVE+   ++   I +
Sbjct: 121 NPDIVLIGNKAD-LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179

Query: 180 RL 181
           R+
Sbjct: 180 RM 181

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (406), Expect = 9e-51
 Identities = 77/172 (44%), Positives = 109/172 (63%), Gaps = 3/172 (1%)

Query: 11  DYDCL--IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQI 68
           D D L  +K+L+IG+SGVGKS LLLRF+D +F      TIG+DFK++TI +DG + KL I
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 69  WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGN 128
           WDTAGQERFRT+T +YYRGA G++LVYDVT   +F  + NW+  +E + + N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
              +D+  R V  ++G   A ++ + F E SAKT   V+  F  +   I Q 
Sbjct: 121 N-KIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  160 bits (405), Expect = 1e-50
 Identities = 77/170 (45%), Positives = 105/170 (61%), Gaps = 1/170 (0%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           YD L K L+IG++G GKSCLL +F +  F      TIG++F  + I + GK +KLQIWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
           AGQERFR++T +YYRGA G LLVYD+T   ++N + NW+ +    AS N+  +L GNK  
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK-K 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
             ++ R V   +    A E  + F ETSA T  NVE+ F   AR I  ++
Sbjct: 121 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (386), Expect = 9e-48
 Identities = 87/167 (52%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R + +DGK+IKLQIWDTAGQ
Sbjct: 3   LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           E FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ E
Sbjct: 63  ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-E 121

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           S+R V   +G+A A E+G+ F ETSAKT  NVE+ F + A++I +++
Sbjct: 122 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 2e-45
 Identities = 66/161 (40%), Positives = 100/161 (62%), Gaps = 1/161 (0%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+ +G+  VGK+ L+ RF   SF  ++  TIGIDF  +T+ L+ + I+LQ+WDTAGQER
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           FR++  +Y R +   ++VYD+T+ +SF     WI ++      +V  +LVGNK D+   K
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-ADK 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
           R V   +G+  A E  + F ETSAK   NV+Q+F  +A  +
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (360), Expect = 5e-44
 Identities = 61/165 (36%), Positives = 100/165 (60%), Gaps = 1/165 (0%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
             K++L+G+  VGK+ L+LR+ +  F    ITT+G  F  + + + GKR+ L IWDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
           ERF  +   YYR + G +LVYD+TDE SF  ++NW++ + +   + +   +VGNK    E
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNK-IDLE 121

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +R V   + ++ A+  G K + TSAK N  +E++F  + + + +
Sbjct: 122 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 4e-43
 Identities = 67/173 (38%), Positives = 95/173 (54%), Gaps = 3/173 (1%)

Query: 10  ADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIW 69
           A    L K++L+GD GVGKS L+ R+    F T    TIG++F  + +E+DG  + +QIW
Sbjct: 1   AGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60

Query: 70  DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS--DNVNKVLVG 127
           DTAGQERFR++ T +YRG+   LL + V D  SF N+ NW +    +A   +  +   V 
Sbjct: 61  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120

Query: 128 NKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 179
               +D S+R V T + QA   + G   +FETSAK   NV   F    R +  
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 2e-42
 Identities = 73/166 (43%), Positives = 109/166 (65%), Gaps = 1/166 (0%)

Query: 14  CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG 73
           C  KL+L+G+S VGKS L+LRF  G F     +TIG  F  +T+ LD   +K +IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD 133
           QER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNK    
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK-ADL 123

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +KRAV   + Q+ AD+  + F ETSAKT++NV ++F +IA+ + +
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (347), Expect = 4e-42
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 3/165 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G  GVGKS L ++F  G+F   +  TI  DF  + IE+D     L+I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDE 134
           +F ++   Y +   G +LVY + ++ SF +I+     I      + V  +LVGNK D++ 
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            +  V +S+G+ALA+E+G  F ETSAK+   V+++F  I R +  
Sbjct: 123 ERE-VSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (346), Expect = 6e-42
 Identities = 71/167 (42%), Positives = 101/167 (60%), Gaps = 2/167 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IKL+L+G++ VGKS ++LRF    F  +   TIG  F  + + ++   +K +IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD--MD 133
           RF ++   YYR A   L+VYDVT   SF   R+W++ + + AS ++   LVGNK D   +
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             +R V   +G+ LA+E G+ FFETSAKT  NV  VF  I   I  +
Sbjct: 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 3e-40
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 4/164 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++G  GVGKS L ++     F   +  TI  D   + + +DG+   L I DTAGQE 
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDES 135
           +  +   Y R   G L V+ + +  SF +I  +   I++    D+V  VLVGNK D+   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
                + + Q LA  YGI + ETSAKT   VE  F+++ R+I+Q
Sbjct: 124 TV--ESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (335), Expect = 5e-40
 Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 19/189 (10%)

Query: 1   MAAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
           MA  P         ++K +++GD  VGK+CLL+ +++ +F   ++ T+  D    ++ + 
Sbjct: 1   MAHGP------GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVG 53

Query: 61  GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
           GK+  L ++DTAGQE +  +    Y      L+ + V + +SF N++       +  + N
Sbjct: 54  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 113

Query: 121 VNKVLVGNKADMDESKR-----------AVPTSKGQALADEYG-IKFFETSAKTNLNVEQ 168
           V  +L+G + D+ +  +            +   +GQ LA E G   + E SA T   ++ 
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

Query: 169 VFFSIARDI 177
           VF      I
Sbjct: 174 VFDEAIIAI 182

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 59/167 (35%), Positives = 97/167 (58%), Gaps = 3/167 (1%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L K++++G  GVGKS L L+F    F   +  T   D   + + LDG+ +++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMD 133
           E +  I   Y+R   G L V+ +T+  SF    ++   I      +NV  +LVGNK+D++
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           + ++ V   + +  AD++ + + ETSAKT  NV++VFF + R+I+ R
Sbjct: 123 DKRQ-VSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (329), Expect = 5e-39
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 13/185 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++   F + ++ T+  D    T+ + G+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
            +  +    Y      L+ + V   SSF N++        H       +LVG + D+ + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 136 KRAV-----------PTSKGQALADEY-GIKFFETSAKTNLNVEQVFFSIARDIKQRLAD 183
              +                + LA +   +K+ E SA T   ++ VF        +    
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182

Query: 184 TDSRS 188
             SR 
Sbjct: 183 KKSRR 187

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (328), Expect = 5e-39
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK +++GD  VGK+CLL+ ++  +F   +I T+  D     + +DGK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
            +  +    Y      L+ + +   +SF N+R       +H   N   +LVG K D+ + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 136 KRAV-----------PTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 179
           K  +              +G A+A E G +K+ E SA T   ++ VF    R +  
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (320), Expect = 7e-38
 Identities = 73/172 (42%), Positives = 110/172 (63%), Gaps = 6/172 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRI-KLQIWDTAG 73
           ++K++++GDSGVGK+ L+ R+ +  ++  +  TIG DF  + + +DG ++  +Q+WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 74  QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK----VLVGNK 129
           QERF+++  A+YRGA   +LVYDVT+ SSF NI++W      HA+ N  +    V++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 130 ADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQR 180
            D +ESK+ V     Q LA   G I  F TSAK  +NV+  F  IAR   Q+
Sbjct: 122 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 7e-38
 Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 10/178 (5%)

Query: 4   PPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
           PP+          KL+++G  GVGKS L ++F    F + +      D   +   +DG  
Sbjct: 2   PPSE-------THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIP 53

Query: 64  IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVN 122
            +L I DTAGQE F  +   Y R   G LLV+ + D  SFN +      I      D+  
Sbjct: 54  ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP 113

Query: 123 KVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            VLVGNKAD+ ES+R VP S+  A    + + +FE SAK  LNV++ F  + R +++ 
Sbjct: 114 VVLVGNKADL-ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 170

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (319), Expect = 8e-38
 Identities = 61/163 (37%), Positives = 97/163 (59%), Gaps = 1/163 (0%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +K+ L+GD+GVGKS ++ RF + SF  +   TIG  F  +T++   +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
           RFR +   YYRG+   ++VYD+T E +F+ ++NW+R + QH   ++   + GNK D+ + 
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
           +  +     +  AD     F ETSAK  +N+ ++F  I+R I 
Sbjct: 125 REVME-RDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 71/165 (43%), Positives = 109/165 (66%), Gaps = 6/165 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           + K+++IGDS VGK+CL  RF  G F      TIG+DF+ R +++DG+RIK+Q+WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 75  ERF-RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADM 132
           ERF +++   YYR    ++ VYD+T+ +SF+++  WI   +QH  ++++ ++LVGNK D+
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 121

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQVFFSIA 174
                 VPT   Q  AD + +  FETSAK    N +VE +F ++A
Sbjct: 122 RS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (317), Expect = 1e-37
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++G  GVGKS L ++F  G F   +  TI  D   + +E+D ++  L+I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDE 134
           +F  +   Y +   G  LVY +T +S+FN++++    I     +++V  +LVGNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
            +                  F E+SAK+ +NV ++F+ + R I 
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  125 bits (314), Expect = 5e-37
 Identities = 66/184 (35%), Positives = 110/184 (59%), Gaps = 6/184 (3%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K++++GDSGVGK+ L+ ++ +  F+  +  TIG DF  + + +D + + +QIWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKA 130
           ERF+++  A+YRGA   +LV+DVT  ++F  + +W       AS    +N   V++GNK 
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK- 120

Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSE- 189
              E+++            +  I +FETSAK  +NVEQ F +IAR+  ++  + +  +E 
Sbjct: 121 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEF 180

Query: 190 PSTI 193
           P  I
Sbjct: 181 PEPI 184

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 1e-36
 Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+++GD   GK+CLL+  S   F   ++ T+  +  +  IE+DGK+++L +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
            +  +    Y     IL+ + +    S  NI        +H   NV  +LVGNK D+   
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 136 KRA-----------VPTSKGQALADEYG-IKFFETSAKTNLNVEQVFFSIARDIKQ 179
           +             V   +G+ +A+  G   + E SAKT   V +VF    R   Q
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (309), Expect = 2e-36
 Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 3/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           +L+++G  GVGKS L ++F    F T +  TI  D   +   +D +  +L I DTAGQE 
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDES 135
           F  +   Y R   G LLV+ VTD  SF  I  + R  +     D    +L+GNKAD+D  
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH- 124

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +R V   +GQ LA +  + + E SAK  +NV+Q F  + R I++ 
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 61/164 (37%), Positives = 95/164 (57%), Gaps = 2/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           IK++++G+  VGKS ++ R+  G FT  +  TIG+DF  R I+++ + ++L +WDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
            F  IT AYYRGA   +LV+  TD  SF  I +W   +      ++   LV NK D+ + 
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 121

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
              +   + + LA    ++F+ TS K +LNV +VF  +A    Q
Sbjct: 122 SC-IKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 2e-35
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 2/165 (1%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+++GD GVGKS L ++F    F   +  TI  D  ++  E+D +   L + DTAGQE 
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           F  +   Y R   G L+VY VTD++SF ++  + + I +        +++          
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL 124

Query: 137 RAVPTSKGQALADEYGIKFFETSAKT-NLNVEQVFFSIARDIKQR 180
           R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q+
Sbjct: 125 RKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (302), Expect = 3e-35
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++GDS  GK+ LL  F+   F  +++ T+  +    + E+D +RI+L +WDT+G  
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSP 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES 135
            +  +    Y  +  +L+ +D++   + +++    +   Q    N   +LVG K+D+   
Sbjct: 62  YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 121

Query: 136 -----------KRAVPTSKGQALADEYGI-KFFETSAKTNLN-VEQVFFSIARDIKQR 180
                      +  V   +G  +A + G   + E SA  + N V  +F         +
Sbjct: 122 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 179

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score =  118 bits (296), Expect = 2e-34
 Identities = 33/166 (19%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T+ I T+G + +  T     K +K  +WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVETVTY----KNVKFNVWDVGGQD 67

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKAD--M 132
           + R +   YY G  G++ V D  D    +  R  +  I       +   ++  NK D   
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
                 +    G     +       + A +   + +    +  + K
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 2e-34
 Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 4/167 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            ++ + G  GVGKS L+LRF  G+F  S+I T+   ++      D     LQI DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISC-DKSICTLQITDTTGSH 61

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--VLVGNKADMD 133
           +F  +           +LVY +T   S   ++     I +   D  +   +LVGNK   +
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNK-CDE 120

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
              R V +S+ +ALA  +   F ETSAK N NV+++F  +    K+R
Sbjct: 121 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G    GK+ +L +   G   T                ++ K I   +WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEYKNISFTVWDVGGQD 55

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE- 134
           + R +   Y++   G++ V D  D    N  R  +  +          +LV         
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
             +   +    G             T A +   + +    ++  +
Sbjct: 116 AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 3e-34
 Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 5/167 (2%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KL + G +GVGKS L++RF    F   +  T+   ++ +    D + + ++I DT   +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATI-DDEVVSMEILDT-AGQ 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIR-NIEQHASDNVNKVLVGNKADMDE 134
                   + R   G +LVYD+TD  SF  +        E     NV  +LVGNKAD+D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTN-LNVEQVFFSIARDIKQR 180
             R V T +G+ LA E    F+E SA T   N+ ++F+ + R++++R
Sbjct: 121 -SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score =  117 bits (293), Expect = 8e-34
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T+  T IG + +     L  K +KL +WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFNVET----LSYKNLKLNVWDLGGQT 72

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDE 134
             R     YY     ++ V D TD+   +     +  + Q     +   ++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             S   V          +       +SA     + +    +   IK+ 
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score =  107 bits (268), Expect = 4e-30
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 8/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K++++G    GK+ +L +FS      +  T      +I          +  +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-----NTRFLMWDIGGQE 70

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADM-- 132
             R+    YY     +++V D TD    +  R  +  +  H        ++  NK D+  
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
             +   +          ++        A T   + Q    +   +K
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 8e-30
 Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            K+ ++G   VGKS L ++F +G F  S+  TI  +   + I ++G+   LQ+ DTAGQ+
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
            +      Y     G +LVY VT   SF  I+    + ++      +  +LVGNK D+  
Sbjct: 64  EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
            +  +   +G+ALA+ +   F E+SAK N     VF  I  + +
Sbjct: 124 ERV-ISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (261), Expect = 4e-29
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 4/163 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KL+L+GD G GK+  + R   G F   ++ T+G++        +   IK  +WDTAGQE+
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK 136
           F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  VL GNK D+   K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI---K 120

Query: 137 RAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
                +K      +  +++++ SAK+N N E+ F  +AR +  
Sbjct: 121 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 9e-29
 Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L ++GD+  GKS L+ RF  GS+          +   + + +DG+   + I + AG  
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVL--EKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM-DE 134
             +          + +  + D     + + +   + ++       +   LVG +  +   
Sbjct: 64  DAKFSGW--ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS 121

Query: 135 SKRAVPTSKGQALA-DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           S R V  ++ +AL  D     ++ET A   LNV++VF  +A+ +   
Sbjct: 122 SPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 168

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-28
 Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           K+LL+G  GVGKS L   F                   R+I +DG+   L ++D   Q+ 
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVEDGPE--AEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNW-IRNIEQHASDNVNKVLVGNKADMDES 135
            R +           ++VY VTD+ SF       ++      +D+V  +LVGNK+D+   
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR- 119

Query: 136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
            R V   +G+A A  +  KF ETSA  + NV+ +F  + R I+ R
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score =  103 bits (257), Expect = 2e-28
 Identities = 30/165 (18%), Positives = 60/165 (36%), Gaps = 8/165 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++LL+G    GK+ LL + +    +     T G + K        +  KL +WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADM-- 132
           + R    +Y+     ++ V D  D   F      +  + +      V  ++  NK D+  
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131

Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI 177
                 +          +   +    SA T   V+     + +++
Sbjct: 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score =  101 bits (252), Expect = 7e-28
 Identities = 34/168 (20%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++LL++G    GK+ +L +F+          TI          L+ +  KL IWD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE 134
             R+    Y+    G++ V D  D     + +  ++++           ++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             S  A+  +        +  +    SA T  ++      +  DI  R
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 9e-28
 Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           +   +++LIG+ GVGKS L   F+    +  S    +G D   RT+ +DG+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 72  A-GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNK 129
              +     +     +     L+VY +TD +SF       I+      ++++  +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 130 ADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           +D+   +  V  S+G+A A  +  KF ETSA    NV+++F  I R ++ R
Sbjct: 121 SDLVRCRE-VSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.6 bits (244), Expect = 1e-26
 Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 15/169 (8%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
           KLL +G    GK+ LL    +         T+   +   + EL    IK   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 77  FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG--------- 127
            R +   Y+    GI+ + D  D   F+  R  +  +   A       ++          
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 128 -NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
            ++A++  +   + T+  Q +  +  ++ F  S        + F  +++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 98.6 bits (244), Expect = 1e-26
 Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           ++L L+G    GK+  +   + G F    I T          ++    + +++WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPT----VGFNMRKITKGNVTIKLWDIGGQP 58

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDE 134
           RFR++   Y RG   I+ + D  D+      +N + N+        +  +++GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 135 S--KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK 178
           +  ++ +      +   +  I  +  S K   N++     + +  K
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 2e-26
 Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 8/168 (4%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +++L++G  G GK+ +L R   G   T                +  K +K Q+WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDE 134
             R     YY     ++ V D  D       ++ +  + +         V+  NK DM++
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 135 --SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
             +   +  S G     +   + F+TSA     +++    +   +K R
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.4 bits (236), Expect = 4e-25
 Identities = 31/202 (15%), Positives = 59/202 (29%), Gaps = 44/202 (21%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS  + +      +   + T GI         D + +  ++ D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSG--VPTTGIIEY----PFDLQSVIFRMVDVGGQR 56

Query: 76  RFRTITTAYYRGAMGILLVYDVTD-----------ESSFNNIRNWIRNIEQHASDNVNKV 124
             R      +     I+ +  +++                +   +   I      N + +
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYG--------------------------IKFFET 158
           L  NK      ++ + +       +  G                          I    T
Sbjct: 117 LFLNK-KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 159 SAKTNLNVEQVFFSIARDIKQR 180
            A    N+  VF ++   I Q 
Sbjct: 176 CATDTENIRFVFAAVKDTILQL 197

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.6 bits (237), Expect = 5e-25
 Identities = 29/195 (14%), Positives = 56/195 (28%), Gaps = 19/195 (9%)

Query: 12  YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           Y    +LLL+G    GKS ++ +          + T GI       +    ++   ++D 
Sbjct: 3   YRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIFET----KFQVDKVNFHMFDV 54

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH-----------ASDN 120
            GQ   R      +     I+ V   +  +      N    +++                
Sbjct: 55  GGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT 114

Query: 121 VNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           ++ +L  NK D+   K     SK +    E+        A      +         I+  
Sbjct: 115 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE 174

Query: 181 LADTDSRSEPSTIKI 195
                + S       
Sbjct: 175 FLRISTASGDGRHYC 189

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.9 bits (214), Expect = 8e-22
 Identities = 34/204 (16%), Positives = 58/204 (28%), Gaps = 46/204 (22%)

Query: 15  LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ 74
           L+K+LL+G    GKS  L +            T GI       + + K +  ++ D  GQ
Sbjct: 2   LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY----DFEIKNVPFKMVDVGGQ 54

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRN-----------IEQHASDNVNK 123
              R      +     IL +   ++                        +      NV+ 
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 124 VLVGNKADMDESKRAVPTSKGQALADEYG---------------------------IKFF 156
           +L  NK D+ E ++    S      +  G                           +   
Sbjct: 115 ILFLNKTDLLE-EKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHH 173

Query: 157 ETSAKTNLNVEQVFFSIARDIKQR 180
            T+A    N+  VF  +   I   
Sbjct: 174 FTTAINTENIRLVFRDVKDTILHD 197

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 86.6 bits (213), Expect = 1e-21
 Identities = 30/202 (14%), Positives = 55/202 (27%), Gaps = 47/202 (23%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
           +KLLL+G    GKS ++ +        + I      FK             +++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF---------KMFDVGGQR 53

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-----------WIRNIEQHASDNVNKV 124
             R      + G   I+    ++D                    +          + + +
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYG--------------------------IKFFET 158
           L  NK      ++   +       +  G                          I    T
Sbjct: 114 LFLNK-KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFT 172

Query: 159 SAKTNLNVEQVFFSIARDIKQR 180
            A    NV+ VF ++   I + 
Sbjct: 173 CATDTKNVQFVFDAVTDVIIKN 194

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 82.1 bits (201), Expect = 3e-20
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 20/177 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 75
            KL+ +G    GK+ LL    D            +      + + G              
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTSEELTIAGMTFTTFDLGG--HI 68

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWI-RNIEQHASDNVNKVLVGNKADMDE 134
           + R +   Y     GI+ + D  D       +  +   +      NV  +++GNK D  E
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE 128

Query: 135 -----------SKRAVPTSKGQALADEYG---IKFFETSAKTNLNVEQVFFSIARDI 177
                            T KG     E     ++ F  S        + F  +A+ I
Sbjct: 129 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.4 bits (176), Expect = 2e-16
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 17  KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 76
            +L +G    GK+ L +R   G +  +  T+I     I  +  +       I     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 77  FRTITTAYYRGAMGILLVYDVTD-ESSFNNIRNWIRNIEQHASDNVNK---VLVGNKADM 132
              +   +   A  ++ V D    +    ++  ++  +   +    N    ++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 133 DESK 136
             +K
Sbjct: 121 AMAK 124

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 28/203 (13%)

Query: 18  LLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           +++ G    GK+ LL   +  S       T+     +   + DG  +   + D  G  + 
Sbjct: 6   IIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDGSGV--TLVDFPGHVKL 59

Query: 78  RTITTAYY-----RGAMGILLVYDVTDESSFNNIRNWIRNI----EQHASDNVNKVLVGN 128
           R   + Y           I +V    D         ++ +I    E    + ++ ++  N
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 129 KADMDESKRAVPTSKGQALADE---------YGIKFFETSAKTNLNVEQVFFSI--ARDI 177
           K   +      P+    AL  E           +   E         E     +      
Sbjct: 120 K--SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGF 177

Query: 178 KQRLADTDSRSEPSTIKINQPDQ 200
           K    +    +   +I   +  Q
Sbjct: 178 KFANLEASVVAFEGSINKRKISQ 200

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 5e-09
 Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 20/173 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFS-DGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT--- 71
           +K+++ G    GKS LL   +   +   + I     D     I +DG  + +        
Sbjct: 2   MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 72  ---AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGN 128
                +             A  +L + D T   + +    W   I +     +   +V N
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL-PAKLPITVVRN 120

Query: 129 KADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 181
           KAD+        T +   +++  G      SA+T   V+ +       +KQ +
Sbjct: 121 KADI--------TGETLGMSEVNGHALIRLSARTGEGVDVLR----NHLKQSM 161

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 24/177 (13%), Positives = 55/177 (31%), Gaps = 8/177 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQ----E 75
           L+G    GKS LL   +      +      +   +  +E+  +  +  + D  G      
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64

Query: 76  RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE--QHASDNVNKVLVGNKADMD 133
             + +   + R      ++  V D +            E   +    + +  +     +D
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 134 ESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEP 190
             +     +   ALA E G+     SA T   +  +  ++   ++        +  P
Sbjct: 125 LLEEEAVKALADALARE-GLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVP 180

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 20/169 (11%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAG-- 73
           ++++++G   VGKS LL R              G    + + E+  + I  +I DTAG  
Sbjct: 1   LRMVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 59

Query: 74  -------QERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126
                  +      T      A  +L V D +      + +   R   +     +NKV V
Sbjct: 60  SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 119

Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR 175
             K + +E K  + T               + SA     +E++  SI R
Sbjct: 120 VEKINEEEIKNKLGT----------DRHMVKISALKGEGLEKLEESIYR 158

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (101), Expect = 4e-06
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 9/171 (5%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
           D  I++   G S  GKS  L   ++         T G    I   E+   +  + +    
Sbjct: 14  DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73

Query: 73  GQ-------ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW--IRNIEQHASDNVNK 123
                     +++     Y      +  +  + D        +   I          +  
Sbjct: 74  YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVL 133

Query: 124 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
           +   +K      K  +   +   LA    ++    S+     V+++   + 
Sbjct: 134 LTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 184

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 19/163 (11%), Positives = 40/163 (24%), Gaps = 10/163 (6%)

Query: 16  IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTI--ELDGKRIKLQIWDTAG 73
           + + + G++G GKS  +                G+                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 74  QERFRTITTAYYR--GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
                     Y              ++      N  +  + I            V  K D
Sbjct: 117 IGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM---KKEFYFVRTKVD 173

Query: 132 MDESKRAVPTSKG---QALADEYGIKFFETSAKTNLNVEQVFF 171
            D +  A    +    + +  +  +    T  +  +    +F 
Sbjct: 174 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 216

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.8 bits (99), Expect = 8e-06
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 8/175 (4%)

Query: 13  DCLIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWD 70
             L ++ L G S VGKS  +    +      TS             I  +   + +  + 
Sbjct: 21  GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYG 80

Query: 71  TAGQERFRTITTAYYRGAMGI----LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLV 126
            A   +                   L       +       + ++  E      +  +++
Sbjct: 81  FAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVI 140

Query: 127 GNKADMDESKRAVPTSKG--QALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
             KAD     +    +K   Q L  +   +    S++T    ++ + +I + I +
Sbjct: 141 ATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR 195

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 19/180 (10%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT 79
             G S VGKS L+ R +           +         +              G  +   
Sbjct: 5   FAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQ 64

Query: 80  ITTAYYRGAM---------GILLVYDVTDESSFNNIRNWIRNIEQH-------ASDNVNK 123
                                +LV D                I             ++  
Sbjct: 65  ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 124

Query: 124 VLVGNKADMDESKRAVPTSKGQALA---DEYGIKFFETSAKTNLNVEQVFFSIARDIKQR 180
           ++  NK D  ++ + V     +       E    F   SAK   N+E++   I   I++R
Sbjct: 125 IVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 184

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.5 bits (93), Expect = 4e-05
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 20  LIGDSGVGKSCLLLRF--------SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
           ++G   VGKS L  +          D    T       +++  +T +L            
Sbjct: 5   IVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQD 64

Query: 72  AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD 131
              ++ + +T    R A  +L V D     +  +        +      +      NKA+
Sbjct: 65  IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVA----NKAE 120

Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTD 185
                      +  +L      +    SA+ N+N++ +  +I + ++++  D +
Sbjct: 121 NLREFEREVKPELYSLGFG---EPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (92), Expect = 5e-05
 Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 7/165 (4%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT-----AGQ 74
           ++G   VGKS LL +      + +         +I  I  +G    + +          +
Sbjct: 10  IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR 69

Query: 75  ERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE 134
              R +  A       + LV  V + + +      + N  +     V   +  NK D  +
Sbjct: 70  AINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV--NKVDNVQ 127

Query: 135 SKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
            K  +        +    +     SA+T LNV+ +   + + + +
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 172

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 24/175 (13%), Positives = 53/175 (30%), Gaps = 11/175 (6%)

Query: 16  IKLLLIGDSGVGKSCLL--LRFSDGSFTTSFITTIGI---------DFKIRTIELDGKRI 64
           IK+ ++G   VGKS L   +   + +  +    T              K   ++  G R 
Sbjct: 9   IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 68

Query: 65  KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV 124
           K ++     ++            A  +++V D T   +  + R       +  +  V   
Sbjct: 69  KSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFN 128

Query: 125 LVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
                   ++          + L          TSA    N++++  ++      
Sbjct: 129 KWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 183

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 2/157 (1%)

Query: 20  LIGDSGVGKSCLLLRF--SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 77
           ++G   VGKS LL        +  +    T     +    E   + + +           
Sbjct: 10  IVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDA 69

Query: 78  RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR 137
                          +   V      +        + +     V KV +    +  ++ +
Sbjct: 70  LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 129

Query: 138 AVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA 174
               +           +    SA     V ++   + 
Sbjct: 130 YPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 166

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 31/172 (18%), Positives = 53/172 (30%), Gaps = 16/172 (9%)

Query: 20  LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER--- 76
           L+G   VGKS LL   S      +      +   +  +E D  R    + D  G      
Sbjct: 6   LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIEGAH 64

Query: 77  ---------FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVG 127
                     R I        +  +   +  D        N   +          +++V 
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQ 179
           NK DM E+   +   K +          F  SA T   + ++ F +A  ++ 
Sbjct: 125 NKMDMPEAAENLEAFKEKL---TDDYPVFPISAVTREGLRELLFEVANQLEN 173

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 6/138 (4%)

Query: 45  ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN 104
             T        + +      ++   D  G E       +      G +LV    +     
Sbjct: 67  YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 126

Query: 105 NIRNWIRNIEQHASDNVNKVLVGNKADM--DESKRAVPTSKGQALADEYG--IKFFETSA 160
             R     +      N+   +V NK D+   E   +      Q     +   +     SA
Sbjct: 127 QTREHFVALGIIGVKNLI--IVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSA 184

Query: 161 KTNLNVEQVFFSIARDIK 178
              +N++ +   I   IK
Sbjct: 185 LHKINIDSLIEGIEEYIK 202

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 12/130 (9%)

Query: 16  IKLLLIGDSGVGKSCLLLRF--------SDGSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
           + +L++G  GVGKS  +           S           +       T+ +      L 
Sbjct: 33  LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI-IDTPGLI 91

Query: 68  IWDTAGQERFRTITTAYY-RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK--V 124
                       I +    +    +L V  +      N  +   + I       +    +
Sbjct: 92  EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 151

Query: 125 LVGNKADMDE 134
           +    A    
Sbjct: 152 VALTHAQFSP 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.98
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.75
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.71
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.68
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.61
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.57
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.45
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.3
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.29
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.26
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.09
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.06
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.05
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.68
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.47
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.36
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.31
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.26
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.25
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.22
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.16
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.07
d1okkd2	207	GTPase domain of the signal recognition particle r	98.03
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.99
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.73
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.7
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.63
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.57
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.56
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.51
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.51
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.49
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.48
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.46
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.44
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.43
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.39
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.38
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.35
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.31
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.29
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.28
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.28
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.23
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.18
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.16
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.14
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.14
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.13
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.1
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.07
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.06
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.05
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.05
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.05
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.01
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.99
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.99
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.98
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.98
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.97
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.96
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.95
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.94
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.94
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.92
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.92
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.9
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.9
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.88
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.87
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.87
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.87
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.86
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.84
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.84
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.82
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.79
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.76
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.76
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.74
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.69
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.67
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.64
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.63
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.62
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.58
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.51
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.46
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.43
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.4
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.38
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.33
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.29
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.28
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.22
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.22
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.21
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.19
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.18
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.15
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.12
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.03
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.81
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.63
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.63
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.61
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.59
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.49
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.41
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.36
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.32
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.25
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.24
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.23
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.13
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.11
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.06
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.02
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.93
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.85
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.78
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.73
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.72
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.65
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.56
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.54
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.53
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.47
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.46
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.28
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.27
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.24
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.23
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.21
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.18
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.08
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.06
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.91
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.8
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.65
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.57
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.57
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.44
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.1
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.74
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.41
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.13
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.08
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.64
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.16
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.13
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.91
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.71
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.64
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.63
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.12
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.01
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.86
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.64
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.83
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.73
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.06
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.74
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	86.72
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.72
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.66
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.42
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.23
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.04
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	82.67
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.98
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	81.49
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.84
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	80.84
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.14

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-37  Score=220.79  Aligned_cols=168  Identities=48%  Similarity=0.864  Sum_probs=155.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            57889999999999999999999999999988888888899989999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|+|++++.++..+..|+..+.+......|+++|+||+|+.+ ...+..++++.+++.+++++++|||++|.|++++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~-~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAE-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEeeecccchhhhhhhhhhhhhcccccccccEEEEEeeccccc-ccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            9999999999999999999999887777799999999999864 456778889999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          172 SIARDIKQR  180 (217)
Q Consensus       172 ~l~~~~~~~  180 (217)
                      +|++.+...
T Consensus       161 ~l~~~l~~~  169 (171)
T d2ew1a1         161 DLACRLISE  169 (171)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            998877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.3e-37  Score=220.00  Aligned_cols=167  Identities=54%  Similarity=0.957  Sum_probs=154.0

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+|||||++.+..++..+++.+|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            57889999999999999999999999999888888888888888888898889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |+|||+++++++..+..|+..+........|+++|+||.|+.+ ...+..++++.+++..++++++|||++|.|++++|+
T Consensus        82 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          82 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED-ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc-ccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999999888777767799999999999865 456778889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027918          172 SIARDIKQ  179 (217)
Q Consensus       172 ~l~~~~~~  179 (217)
                      +|++.+.+
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=216.39  Aligned_cols=165  Identities=47%  Similarity=0.866  Sum_probs=153.5

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      +++.+||+|+|++|+|||||++++.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            46889999999999999999999999999988888888889989999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||++++++++.+..|+..+.+......|+++++||+|+.. ......++++.+++..++++++|||++|.|++++|+
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~  159 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA-QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  159 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchh-hcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999888877899999999999855 556677889999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          172 SIARDI  177 (217)
Q Consensus       172 ~l~~~~  177 (217)
                      +|++.+
T Consensus       160 ~i~~~i  165 (166)
T d1z0fa1         160 EAAKKI  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=216.65  Aligned_cols=170  Identities=50%  Similarity=0.902  Sum_probs=152.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      .+.+||+|+|++|+|||||++++.++.+.+.+.++.+...........+..+.+.+||++|+..+..++..+++.+|++|
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   80 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEE
Confidence            36799999999999999999999999999888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      +|||++++++++.+..|+..+......++|+++|+||+|+.. .+....+++..+++..+++|+++||++|.|++++|.+
T Consensus        81 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~-~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~  159 (173)
T d2a5ja1          81 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN  159 (173)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhh-hhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999999999999888777899999999999854 4567788899999999999999999999999999999


Q ss_pred             HHHHHHHHhcc
Q 027918          173 IARDIKQRLAD  183 (217)
Q Consensus       173 l~~~~~~~~~~  183 (217)
                      |++.+.++.++
T Consensus       160 i~~~i~~~~~~  170 (173)
T d2a5ja1         160 TAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99998876654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-37  Score=218.03  Aligned_cols=164  Identities=37%  Similarity=0.776  Sum_probs=146.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||+++|.++.+.+.+.++.+.+.....+..++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            67999999999999999999999999999999999989998888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||++++++++.+..|+..+........|+++|+||+|+.. .+.++.++++.++++++++|++|||++|.|++++|.+|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~-~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK-ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeecccccccc-ccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999888776666789999999999865 46788899999999999999999999999999999999


Q ss_pred             HHHHH
Q 027918          174 ARDIK  178 (217)
Q Consensus       174 ~~~~~  178 (217)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1z08a1         161 CKRMI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8e-37  Score=216.99  Aligned_cols=162  Identities=37%  Similarity=0.704  Sum_probs=150.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.++.+...+.++.+.+........++..+.+.+||++|+..+..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            38999999999999999999999999888899998888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ||++++++++.+..|+..+..... +.|+++|+||+|+.+ .+.+..++++.+++.++++|+++||++|.|++++|++|+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLD-DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGG-GCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCC-CceEEEeeccCCccc-ceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            999999999999999999987665 589999999999865 456788889999999999999999999999999999999


Q ss_pred             HHHH
Q 027918          175 RDIK  178 (217)
Q Consensus       175 ~~~~  178 (217)
                      +.+.
T Consensus       160 ~~~l  163 (164)
T d1z2aa1         160 EKHL  163 (164)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8775

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-36  Score=215.71  Aligned_cols=171  Identities=46%  Similarity=0.799  Sum_probs=157.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      +++.+||+|+|.+|+|||||+++|..+.+.+.+.++.+.......+..++..+.+.+||+||++.+..++..+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            67889999999999999999999999999988888888888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||.++++++..+..|+..+......+.|+++|+||+|+.. ......+....++...+++|+++||++|.|++++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          82 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccc-hhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999999999999888777899999999999854 566777888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027918          172 SIARDIKQRLAD  183 (217)
Q Consensus       172 ~l~~~~~~~~~~  183 (217)
                      +|++.+..+.++
T Consensus       161 ~l~~~i~~~~~~  172 (174)
T d2bmea1         161 QCARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999998877654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=215.82  Aligned_cols=169  Identities=36%  Similarity=0.585  Sum_probs=150.6

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....+||+|+|++|+|||||+++|.++.+...+.++.. +.....+.+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            35679999999999999999999999998888777754 55567788899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++|||++++.+++.+..|+..+.+.. ..+.|+++|+||+|+.+ .+....++++.++..++++|++|||++|.|++++|
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhh-ccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999886643 45789999999999865 45677889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 027918          171 FSIARDIKQRLA  182 (217)
Q Consensus       171 ~~l~~~~~~~~~  182 (217)
                      +.|++.+.++++
T Consensus       161 ~~l~~~i~k~~~  172 (173)
T d2fn4a1         161 EQLVRAVRKYQE  172 (173)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999876654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-36  Score=218.92  Aligned_cols=172  Identities=58%  Similarity=1.006  Sum_probs=157.8

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ..++.+||+|+|++|+|||||+++|.++.+...+.++.+..+....+.+++..+.+.||||||++.+..++..+++++++
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            46789999999999999999999999999998889998888888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +|+|||+++++++..+..|+..+.+....+.|+++|+||+|+.+ ......++...++...++.|+++||++|.|++++|
T Consensus        82 ~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD-KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEecccccc-ccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999999999988877777899999999999866 56678888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 027918          171 FSIARDIKQRLAD  183 (217)
Q Consensus       171 ~~l~~~~~~~~~~  183 (217)
                      ++|++.+......
T Consensus       161 ~~l~~~i~~~~~~  173 (194)
T d2bcgy1         161 LTMARQIKESMSQ  173 (194)
T ss_dssp             HHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhhh
Confidence            9999988765443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=214.44  Aligned_cols=171  Identities=49%  Similarity=0.856  Sum_probs=153.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.++++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            36889999999999999999999999999888888888888888889999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      ++|||.++++++..+..|+..+..+...++|+++|+||+|+.+ ......+....+...++.+++++||++|.|++++|+
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~  159 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH-LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK  159 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccc-cccchHHHHHHhhcccCceEEEEecCCCcCHHHHHH
Confidence            9999999999999999999999888877899999999999865 355666777888888999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 027918          172 SIARDIKQRLAD  183 (217)
Q Consensus       172 ~l~~~~~~~~~~  183 (217)
                      +|++.+.+..++
T Consensus       160 ~l~~~i~~~~~~  171 (175)
T d2f9la1         160 NILTEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhh
Confidence            999998766553

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-36  Score=213.50  Aligned_cols=165  Identities=31%  Similarity=0.413  Sum_probs=133.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.+..+... .++ ..+.+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEA-AGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCc-CCe-eeeeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            37999999999999999999998766443 233 3344556778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++++++.+..|+..+..... .++|+++|+||+|+.+ .+.+...+++.++..++++|++|||++|.|++++|+.|
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l  157 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR-SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  157 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhh-hcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999999877653 4689999999999965 45678889999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 027918          174 ARDIKQRLA  182 (217)
Q Consensus       174 ~~~~~~~~~  182 (217)
                      ++.+..++.
T Consensus       158 ~~~i~~~~~  166 (168)
T d2gjsa1         158 VRQIRLRRD  166 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            998876654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-36  Score=215.59  Aligned_cols=170  Identities=72%  Similarity=1.207  Sum_probs=127.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      .++.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.+|++
T Consensus         3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~   82 (173)
T d2fu5c1           3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   82 (173)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence            57889999999999999999999999998888889999999999999999899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |+|||++++.++..+..|+..+......+.|+++|+||.|+.. ......+++..++...+++|++|||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS-CCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh-hcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999877777899999999999865 455667778889999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 027918          172 SIARDIKQRLA  182 (217)
Q Consensus       172 ~l~~~~~~~~~  182 (217)
                      +|++.+..+.+
T Consensus       162 ~l~~~i~~k~~  172 (173)
T d2fu5c1         162 TLARDIKAKMD  172 (173)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999876653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-35  Score=211.32  Aligned_cols=164  Identities=35%  Similarity=0.578  Sum_probs=147.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +++||+++|++|+|||||++++.++.+.+.+.++.+.. +...+..++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            36899999999999999999999999888888877644 45667788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFF  171 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~  171 (217)
                      |||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.. .+.++.++++++++.++++|+++||+++. ||+++|.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH-LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhh-hceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            999999999999999999987664 45789999999999966 56788899999999999999999999986 9999999


Q ss_pred             HHHHHHHH
Q 027918          172 SIARDIKQ  179 (217)
Q Consensus       172 ~l~~~~~~  179 (217)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-36  Score=212.44  Aligned_cols=161  Identities=41%  Similarity=0.748  Sum_probs=149.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|+|||||+++|.++.+...+.++.+..........++..+.+.+||++|++.+...+..+++.++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            58999999999999999999999999999999888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIAR  175 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  175 (217)
                      |.+++.+++.+..|+..+......+.|+++|+||+|+.+ ......++++.+++.++++|++|||++|.|++++|++|++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD-KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhh-hhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999999887777899999999999865 4566778999999999999999999999999999999988


Q ss_pred             HH
Q 027918          176 DI  177 (217)
Q Consensus       176 ~~  177 (217)
                      .+
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            75

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=215.98  Aligned_cols=162  Identities=26%  Similarity=0.457  Sum_probs=140.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.++.+...+.++.+.. .......++..+.+.+||++|++++...+..+++.+|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDN-YAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-cceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            5899999999999999999999999998888887744 445566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEcCCC
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (217)
                      ||+++++||+.+..|+.........+.|+++|+||+|+.+.           ...+..++++.++..++ .+|++|||++
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999999987555544444557999999999998532           34577889999999875 7999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|++++|+.++..+
T Consensus       162 ~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         162 QKGLKNVFDEAILAA  176 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            999999999988766

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-35  Score=210.71  Aligned_cols=163  Identities=39%  Similarity=0.738  Sum_probs=151.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+|+|.+|+|||||+++|.++.+.+.+.++.+..........++....+.+||++|++.+..++..+++.++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            35899999999999999999999999999999999888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.+ .+.+..++++.++...+++|++|||++|.|++++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD-VREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhcc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999998888877899999999999964 56788889999999999999999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=9.4e-36  Score=212.17  Aligned_cols=163  Identities=36%  Similarity=0.663  Sum_probs=144.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||++++.++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999888888887655 4667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.+ .+.+..++++.+++..+++|+++||++|.|++++|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED-KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999987754 45789999999999865 5678889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |++.+.
T Consensus       161 l~~~i~  166 (168)
T d1u8za_         161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=212.63  Aligned_cols=166  Identities=27%  Similarity=0.469  Sum_probs=142.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ....+||+|+|++|+|||||+++|+++.+...+.+|.+ +.....+..++..+.+.+||++|++.+..++..+++++|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            45678999999999999999999999998888888776 44556667788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEc
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETS  159 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~S  159 (217)
                      ++|||++++++++++..|+....+....+.|+++|+||+|+.+.           .+.+..++++.+++.++ +.|++||
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S  164 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  164 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence            99999999999998776444444444557999999999998652           35678889999999988 6999999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (217)
                      |++|.|++++|+.+++.++
T Consensus       165 Ak~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         165 ALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999988763

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-35  Score=208.47  Aligned_cols=166  Identities=37%  Similarity=0.611  Sum_probs=144.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+|+|++|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+||++|...+...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            348999999999999999999999998888877766 5566777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||.+++++++.+..|+..+.... ....|+++|+||+|+.. .+.+..++++.+++.++++|++|||++|.|++++|..
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~  161 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH-QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHE  161 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTT-SCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhh-hccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999999998876554 34689999999999865 5677888999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027918          173 IARDIKQRL  181 (217)
Q Consensus       173 l~~~~~~~~  181 (217)
                      |++.+.+++
T Consensus       162 l~~~i~k~~  170 (171)
T d2erya1         162 LVRVIRKFQ  170 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999886543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=209.33  Aligned_cols=163  Identities=46%  Similarity=0.824  Sum_probs=151.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||+++|.++.+...+.++.+..+....+...+..+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            45899999999999999999999999998889999988888888899989999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||.++.++++.+..|+..+.+....+.|+++|+||+|+.+ .+.++.++++.++..++++|+++||++|.|++++|..|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~-~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN-KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG-GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccc-cccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999999887777899999999999865 56788899999999999999999999999999999999


Q ss_pred             HHHH
Q 027918          174 ARDI  177 (217)
Q Consensus       174 ~~~~  177 (217)
                      ++.+
T Consensus       164 ~~~i  167 (170)
T d1r2qa_         164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-35  Score=208.52  Aligned_cols=163  Identities=33%  Similarity=0.506  Sum_probs=146.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+|+|++|+|||||+++|.++.+...+.++.+.++ ...+.+++..+.+.+||++|...+..++..+++.+|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999998888888887664 4667889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.. .+.++.++++.++++++++|++|||++|.|++++|+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM-ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecccccccc-ccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999999887654 45789999999999865 4567889999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          173 IARDIK  178 (217)
Q Consensus       173 l~~~~~  178 (217)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987664

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=214.84  Aligned_cols=171  Identities=49%  Similarity=0.879  Sum_probs=150.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECC----------eEEEEEEeeCCCcccccchh
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG----------KRIKLQIWDTAGQERFRTIT   81 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~   81 (217)
                      .++.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++          ..+.+.+||++|++.++.++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            57889999999999999999999999999988888888777776665533          34789999999999999999


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                      ..+++++|++|+|||++++.+++.+..|+..+.... ....|+++|+||.|+.. .+.+..++++.++++++++++++||
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPD-QREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchh-hhcchHHHHHHHHHHcCCEEEEEeC
Confidence            999999999999999999999999999988775543 34688999999999965 5678888999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcc
Q 027918          161 KTNLNVEQVFFSIARDIKQRLAD  183 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~~~~  183 (217)
                      ++|.|++++|++|++.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876553

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=208.53  Aligned_cols=163  Identities=32%  Similarity=0.539  Sum_probs=141.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      ..||+|+|++|+|||||+++|.++.+.+.+.++.+ +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            46999999999999999999999999888888776 44556677888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEcCCC
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (217)
                      ||++++++++.+..|+..+......+.|+++|+||+|+.+.           .+.+..++++.+++.++ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999887555554444457999999999998642           24567888999999988 5899999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDIK  178 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~~  178 (217)
                      |.|++++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-35  Score=209.58  Aligned_cols=162  Identities=32%  Similarity=0.484  Sum_probs=143.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||+++|+++.+.+.+.+|.+..+ ......++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999998888888877444 4556788888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHA--SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      |||++++++++.+..|+..+....  ..+.|+++|+||+|+.+ .+.+..++++.+++.++++|++|||++|.|++++|+
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~-~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~  158 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP-SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ  158 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccc-cccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHH
Confidence            999999999999999998886543  25689999999999855 466788899999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          172 SIARDI  177 (217)
Q Consensus       172 ~l~~~~  177 (217)
                      .|++.+
T Consensus       159 ~l~~~~  164 (171)
T d2erxa1         159 ELLNLE  164 (171)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=205.52  Aligned_cols=166  Identities=53%  Similarity=0.987  Sum_probs=142.2

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      ++..+||+|+|++++|||||++++.++.+.. .+.++.+.++....+..++..+.+.||||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            6788999999999999999999999988754 445566778888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      +++|||+++++++..+..|+..+........|+++|+||.|+.. ...+..+++..+++.++++|+++||++|.|++++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH-ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhh-cccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999888877777789999999999865 56778889999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 027918          171 FSIARDIK  178 (217)
Q Consensus       171 ~~l~~~~~  178 (217)
                      ++|++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-35  Score=206.75  Aligned_cols=165  Identities=61%  Similarity=1.097  Sum_probs=146.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+|+|++|+|||||+++|+++.+...+.++.+.++....+..++..+.+.+|||||++.+..++..++++++++++
T Consensus         1 ~~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T d1g16a_           1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999999899999999999999999988999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      |||++++++++.+..|+..+........|++++++|.|+.  ......++++.++..+++++++|||++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l  158 (166)
T d1g16a_          81 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  158 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh--hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHH
Confidence            9999999999999999988888877778999999999974  35567888999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 027918          174 ARDIKQR  180 (217)
Q Consensus       174 ~~~~~~~  180 (217)
                      ++.+.++
T Consensus       159 ~~~i~~k  165 (166)
T d1g16a_         159 AKLIQEK  165 (166)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-36  Score=214.45  Aligned_cols=161  Identities=32%  Similarity=0.639  Sum_probs=140.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.++.+...+.+|.+.++....+..++..+.+.+||++|+..+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999999999999999999888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIA  174 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  174 (217)
                      ||++++++++.+..|+..+.+... ++|+++|+||+|+....   ..++...++...+++|+++||++|.|++++|++|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~---~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSC---CTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhh---hhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999877664 69999999999996532   22344577888899999999999999999999999


Q ss_pred             HHHHH
Q 027918          175 RDIKQ  179 (217)
Q Consensus       175 ~~~~~  179 (217)
                      +.+..
T Consensus       159 ~~l~~  163 (170)
T d1i2ma_         159 RKLIG  163 (170)
T ss_dssp             HHHHT
T ss_pred             HHHcc
Confidence            98863

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-34  Score=205.50  Aligned_cols=163  Identities=44%  Similarity=0.768  Sum_probs=150.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.++.+...+.++.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999988899988888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES--KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      ||++++.+++.+..|+..+........|+++|+||+|+.+.  .+.+..++++.+++.++++|+++||++|.|++++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999999998887777777999999999998542  4677889999999999999999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |++.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            87653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=206.58  Aligned_cols=162  Identities=38%  Similarity=0.660  Sum_probs=145.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|+++.+...+.++.+ +.+......++..+.+.+||++|++.+...+..++++++++++|
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            58999999999999999999999998888888776 45566778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.. .+....++++.+++.++++|++|||++|.|++++|+.|
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES-EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhh-cccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            99999999999999999887654 35789999999999865 45677788999999999999999999999999999999


Q ss_pred             HHHHH
Q 027918          174 ARDIK  178 (217)
Q Consensus       174 ~~~~~  178 (217)
                      ++.+.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-34  Score=204.93  Aligned_cols=164  Identities=35%  Similarity=0.586  Sum_probs=142.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||++++.++.+.+.+.+|.+..+. ..+..++..+.+.+||++|...+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            389999999999999999999999999888898876654 445678888999999999998764 456688999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCC-CHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~  172 (217)
                      ||+++++++..+..|+..+.... ..+.|+++|+||+|+.+ .+.++.++++.++++++++|++|||++|. ||+++|..
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~-~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~  158 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH-SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  158 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGG-GCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhh-hccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHH
Confidence            99999999999999877665543 35799999999999864 46788899999999999999999999998 59999999


Q ss_pred             HHHHHHHHh
Q 027918          173 IARDIKQRL  181 (217)
Q Consensus       173 l~~~~~~~~  181 (217)
                      |++.+..++
T Consensus       159 l~~~i~~~r  167 (168)
T d2atva1         159 LCREVRRRR  167 (168)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999887653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-34  Score=206.85  Aligned_cols=168  Identities=43%  Similarity=0.740  Sum_probs=134.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEEC-CeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +.+||+|+|++|+|||||+++|.++.+...+.++.+........... ...+.+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            47899999999999999999999999888877777666665555543 34478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVE  167 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  167 (217)
                      +|||++++.+++.+..|+..+....    ..+.|+++|+||+|+.+....+..+++++++..++ .+|++|||++|.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999999886643    24689999999999976556678888999999886 799999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 027918          168 QVFFSIARDIKQRL  181 (217)
Q Consensus       168 ~l~~~l~~~~~~~~  181 (217)
                      ++|++|++.+.+++
T Consensus       161 e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         161 TAFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999887764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-34  Score=203.43  Aligned_cols=162  Identities=37%  Similarity=0.661  Sum_probs=145.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.++.+...+.++.+..+. ..+...+..+.+.+||++|.+.+...+..+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            489999999999999999999999998888888876655 4456788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS-DNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSI  173 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  173 (217)
                      ||++++.+++.+..|+..+.+... .++|+++|+||+|+..  +....++++.+++.++++|+++||++|.|++++|.+|
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc--ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999877653 4689999999999853  5667888999999999999999999999999999999


Q ss_pred             HHHHHH
Q 027918          174 ARDIKQ  179 (217)
Q Consensus       174 ~~~~~~  179 (217)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-34  Score=203.14  Aligned_cols=161  Identities=35%  Similarity=0.673  Sum_probs=142.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|..+.+.+.+.++.+..+ ...+..++..+.+.+||++|+..+...+..+++.+|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            58999999999999999999999999988888877544 45667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh-CCeEEEEcCCCCCCHHHHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      ||++++++++.+..|+..+.+.. ..+.|+++|+||+|+.. ......++...++++. +++|++|||++|.|++++|++
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED-ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccc-ccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999887654 45789999999999965 4566777888888774 689999999999999999999


Q ss_pred             HHHHH
Q 027918          173 IARDI  177 (217)
Q Consensus       173 l~~~~  177 (217)
                      |++.+
T Consensus       161 l~~~i  165 (167)
T d1c1ya_         161 LVRQI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=202.64  Aligned_cols=167  Identities=47%  Similarity=0.809  Sum_probs=151.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      -.++||+|+|++|+|||||+++|.++.+...+.++.+.......+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            35689999999999999999999999998888888888888888889998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFF  171 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  171 (217)
                      +|||++++.+++.+..|+..+.+.. ....|+++++||.|..  ...+..+++..+++.++++|+++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~--~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~  162 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFE  162 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc--cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999887654 3458889999999974  466788889999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 027918          172 SIARDIKQRL  181 (217)
Q Consensus       172 ~l~~~~~~~~  181 (217)
                      +|++.+.+..
T Consensus       163 ~l~~~l~~~p  172 (177)
T d1x3sa1         163 ELVEKIIQTP  172 (177)
T ss_dssp             HHHHHHHTSG
T ss_pred             HHHHHHccCc
Confidence            9999887553

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-33  Score=203.81  Aligned_cols=164  Identities=31%  Similarity=0.580  Sum_probs=141.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..+||+|+|++|+|||||+++|+.+.+...+.++.+ +.....+..++..+.+.+||++|++.+..++..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            5569999999999999999999999999888888876 445566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEc
Q 027918           93 LVYDVTDESSFNNIRN-WIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETS  159 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~S  159 (217)
                      +|||++++++++.+.. |...+.. ...+.|+++|+||+|+.+.           .......+...+++.++ ++|++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            9999999999999987 5555544 4457999999999998542           23355677888888887 7999999


Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSIARDIK  178 (217)
Q Consensus       160 a~~~~~i~~l~~~l~~~~~  178 (217)
                      |++|.|++++|..|++.++
T Consensus       161 Ak~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999998874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=199.89  Aligned_cols=165  Identities=42%  Similarity=0.727  Sum_probs=145.7

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEE
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   91 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (217)
                      ..+.+||+|+|++|+|||||+++|.++.+...+.++.+.......+..++..+.+.+||++|...+...+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            46789999999999999999999999999988888888888888888899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCCCCCH
Q 027918           92 LLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNV  166 (217)
Q Consensus        92 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i  166 (217)
                      ++++|.+++.+++.+..|+..+....    ..+.|+++|+||+|+.+  +.+..++++.++++.+ ++|++|||++|.|+
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~--~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI  160 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNV  160 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS--CSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh--ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCH
Confidence            99999999999999999998886643    24689999999999853  5778889999998875 79999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          167 EQVFFSIARDIK  178 (217)
Q Consensus       167 ~~l~~~l~~~~~  178 (217)
                      +++|++|++.++
T Consensus       161 ~e~f~~l~~~il  172 (174)
T d1wmsa_         161 AAAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-33  Score=200.74  Aligned_cols=165  Identities=30%  Similarity=0.444  Sum_probs=139.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCC---cccccchhhhcccCCc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAG---QERFRTITTAYYRGAM   89 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G---~~~~~~~~~~~~~~~d   89 (217)
                      ..+||+++|++|+|||||+++|.+.... ....++.+.+.+...+.+++..+.+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999999987655 34456667778888888999889999999875   4433  5677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ++|+|||++++.+++.+..|+..+.... ..++|+++|+||+|+.+ .+.+..++++.++..++++|+++||++|.|+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~-~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~  158 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR-CREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  158 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccc-cccccHHHHHHHHHHcCCeEEEEeCCCCcCHHH
Confidence            9999999999999999999999887653 35799999999999865 466788889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 027918          169 VFFSIARDIKQRL  181 (217)
Q Consensus       169 l~~~l~~~~~~~~  181 (217)
                      +|+.|++.+..++
T Consensus       159 ~f~~l~~~i~~rr  171 (172)
T d2g3ya1         159 LFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999886654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.4e-33  Score=201.10  Aligned_cols=167  Identities=41%  Similarity=0.730  Sum_probs=147.6

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|.+|+|||||+++|.++.+...+.++.+.++........+..+.+.+||++|...+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            58999999999999999999999999998999998888888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-hCCeEEEEcCCCCCCHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHAS----DNVNKVLVGNKADMDESKRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~----~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l  169 (217)
                      +|.+++.++..+..|+..+.....    .+.|+++|+||+|+.+  .....++...++.. .++++++|||++|.|++++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  159 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN--RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQA  159 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC--CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc--cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHH
Confidence            999999999999999988866542    3589999999999854  45666677777654 4689999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027918          170 FFSIARDIKQRLAD  183 (217)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (217)
                      |++|++.+.++...
T Consensus       160 f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         160 FQTIARNALKQETE  173 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccc
Confidence            99999988776543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-33  Score=199.71  Aligned_cols=164  Identities=24%  Similarity=0.460  Sum_probs=140.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      ..||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999999888888765 44455667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------CCccChHHHHHHHHHhC-CeEEEEcCCC
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES-----------KRAVPTSKGQALADEYG-IKFFETSAKT  162 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (217)
                      ||+++++||+.+..|+.........+.|+++|+||+|+...           .+.++.++...++++.+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999999888655544444457999999999998542           35577889999999987 4899999999


Q ss_pred             CC-CHHHHHHHHHHHHHH
Q 027918          163 NL-NVEQVFFSIARDIKQ  179 (217)
Q Consensus       163 ~~-~i~~l~~~l~~~~~~  179 (217)
                      |. +++++|+.++..++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999988753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9e-33  Score=196.06  Aligned_cols=159  Identities=45%  Similarity=0.854  Sum_probs=142.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-hhhhcccCCcEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-ITTAYYRGAMGIL   92 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~~i   92 (217)
                      +.+||+|+|++|+|||||+++|.++.+...+.++.+.......+........+.+||++|...+.. .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            368999999999999999999999999988888888888888888888889999999999877654 5677899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCC---CCCHHH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKT---NLNVEQ  168 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~  168 (217)
                      +|||++++++++.+..|+..+.+.. ..+.|++||+||+|+.+ .+.++.++++.+++.+++++++|||++   +.||++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e  159 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  159 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGG-GCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchh-ccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHH
Confidence            9999999999999999999987754 45789999999999865 456788999999999999999999997   569999


Q ss_pred             HHHHH
Q 027918          169 VFFSI  173 (217)
Q Consensus       169 l~~~l  173 (217)
                      +|.+|
T Consensus       160 ~F~~l  164 (165)
T d1z06a1         160 IFMTL  164 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99886

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8e-31  Score=187.41  Aligned_cols=162  Identities=25%  Similarity=0.395  Sum_probs=133.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||++++.++.+... .++.+ +.+...+.+++..+.+.|||++|+..+     .+++.+|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            59999999999999999999999988654 34433 344566788999999999999998654     367889999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC-CCccChHHHHHHHHH-hCCeEEEEcCCCCCCHHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA---SDNVNKVLVGNKADMDES-KRAVPTSKGQALADE-YGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~---~~~~pvivv~nK~Dl~~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l  169 (217)
                      ||+++++||+.+..|+..+....   ..+.|+++|+||.|+... .+.+..++++.++.. .+++|++|||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            99999999999999998886553   356799999999998542 345677788888655 4689999999999999999


Q ss_pred             HHHHHHHHHHHhcc
Q 027918          170 FFSIARDIKQRLAD  183 (217)
Q Consensus       170 ~~~l~~~~~~~~~~  183 (217)
                      |..|++.+...+.+
T Consensus       158 F~~l~~~i~~~~~~  171 (175)
T d2bmja1         158 FQEVAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999988766543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.2e-31  Score=188.63  Aligned_cols=155  Identities=23%  Similarity=0.443  Sum_probs=126.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|++|+|||||+++|.++.+.+.+.+|.+..+  ..+..++  +.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeee--eeeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999999999999998888888766444  4455666  7999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHH-HHHH----HHHhCCeEEEEcCCCCCCHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSK-GQAL----ADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ||+++.+++.....|+..+.... ..+.|+++|+||.|+.+..   ...+ .+.+    +...+++++++||++|.|+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh---hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            99999999999998877775543 3579999999999986432   1222 1221    223356899999999999999


Q ss_pred             HHHHHHHH
Q 027918          169 VFFSIARD  176 (217)
Q Consensus       169 l~~~l~~~  176 (217)
                      +|++|++.
T Consensus       155 ~~~~l~~~  162 (164)
T d1zd9a1         155 TLQWLIQH  162 (164)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.8e-31  Score=191.14  Aligned_cols=162  Identities=21%  Similarity=0.354  Sum_probs=126.8

Q ss_pred             cCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918            7 RARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (217)
Q Consensus         7 ~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   86 (217)
                      +.+...+..+||+|+|++|+|||||+++|.++.+.... ++.+  +....+...+  +.+.+||++|++.++..+..+++
T Consensus         8 k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~--~~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~   82 (176)
T d1fzqa_           8 KLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQG--FNIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFE   82 (176)
T ss_dssp             HCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETT--EEEEEEEETT--EEEEEEECSSCGGGHHHHHHHHT
T ss_pred             HhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeee--eeEEEeccCC--eeEeEeeccccccchhHHHHHhh
Confidence            34555667799999999999999999999998775332 2223  4445566666  78999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHH-----HHHHhCCeEEEEcC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQA-----LADEYGIKFFETSA  160 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa  160 (217)
                      .+|++++|||+++..++..+..|+..+.... ..+.|+++|+||+|+.+...   .....+     ++....+++++|||
T Consensus        83 ~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~SA  159 (176)
T d1fzqa_          83 NTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGLNLHTIRDRVWQIQSCSA  159 (176)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred             ccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc---HHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            9999999999999999999988777665433 35789999999999965322   222221     12223468999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARD  176 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~  176 (217)
                      ++|+|++++|+||++.
T Consensus       160 ~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         160 LTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             TTCTTHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHhc
Confidence            9999999999999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=7.2e-31  Score=186.13  Aligned_cols=157  Identities=23%  Similarity=0.383  Sum_probs=123.3

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+|+|++|+|||||+++|.+..+. ...++.+  .....+..++  +.+.+||+||++.++..+..+++.+++++++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSS--EEEEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEe--eeeeeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            489999999999999999999987654 3445544  4445566666  8999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCHHH
Q 027918           95 YDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus        95 ~d~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      ||+++..++.....++..+.. ....+.|+++|+||+|+.+..   ..++.....     ....+++++|||++|.|+++
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL---SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc---CHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999998888776655543 334579999999999986422   222222221     12246899999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          169 VFFSIARDIKQ  179 (217)
Q Consensus       169 l~~~l~~~~~~  179 (217)
                      +|++|.+.+..
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.4e-31  Score=191.58  Aligned_cols=162  Identities=22%  Similarity=0.360  Sum_probs=122.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcE
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   90 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   90 (217)
                      .....+||+++|++|||||||+++|.+..+.. ..++.+.  .......++  +.+.+||++|++.++..+..++..+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~--~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGF--NVETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTC--CEEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccce--EEEEEeeCC--EEEEEEecccccccchhHHhhhcccee
Confidence            34567999999999999999999998876543 2344333  334445555  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHH-----HHHHhCCeEEEEcCCCCC
Q 027918           91 ILLVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQA-----LADEYGIKFFETSAKTNL  164 (217)
Q Consensus        91 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  164 (217)
                      +++|+|++++.++.....|+..+... ...+.|++||+||+|+.+.   ...+++..     .+...++++++|||++|+
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~  164 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGE  164 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc---cCHHHHHHHHHHHHHhhCCCEEEEEECCCCC
Confidence            99999999999999888887665443 3457999999999998542   22232222     123345689999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 027918          165 NVEQVFFSIARDIKQR  180 (217)
Q Consensus       165 ~i~~l~~~l~~~~~~~  180 (217)
                      |++++|++|++.+.++
T Consensus       165 gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         165 GITEGLDWLIDVIKEE  180 (182)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            9999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=4.2e-30  Score=183.51  Aligned_cols=156  Identities=21%  Similarity=0.414  Sum_probs=121.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+++|++|+|||||+++|.++.+.. ..++.+  ..........  +.+.+||+||+..++..+..+++.++++++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVG--FNVETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETT--EEEEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceee--eeEEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            35899999999999999999999876543 233333  3334445555  899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHH-----HHHHhCCeEEEEcCCCCCCHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQA-----LADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      |+|+++.+++..+..|+..+.. ....+.|+++|+||+|+.+...   ..++..     .+...++.+++|||++|+|++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc---HHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            9999999999999887776654 3345799999999999865322   222221     222335689999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          168 QVFFSIARDI  177 (217)
Q Consensus       168 ~l~~~l~~~~  177 (217)
                      |+|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=4.8e-29  Score=175.38  Aligned_cols=156  Identities=20%  Similarity=0.347  Sum_probs=120.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEE
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVY   95 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~   95 (217)
                      +||+|+|++|||||||+++|.++.+..........   ......  ..+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEee--eeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988876654443322   222233  3389999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCc--cChHHHHHHHHHhCCeEEEEcCCCCCCHHHHHHH
Q 027918           96 DVTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEQVFFS  172 (217)
Q Consensus        96 d~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  172 (217)
                      |..++.++..+..|+..+.... ....|+++++||.|+.+....  +.......++...+++++++||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999888877775533 346899999999998552211  1111112233344678999999999999999999


Q ss_pred             HHHH
Q 027918          173 IARD  176 (217)
Q Consensus       173 l~~~  176 (217)
                      |.+.
T Consensus       156 l~~~  159 (160)
T d1r8sa_         156 LSNQ  159 (160)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=4.1e-26  Score=163.02  Aligned_cols=157  Identities=20%  Similarity=0.307  Sum_probs=116.3

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ...+||+|+|.+|||||||+++|.+..+...... .+  .........+  +.+.+||+++.+.+...+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~-~~--~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IG--SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SC--SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccc-cc--eeEEEEeecc--eEEEEeccccccccccchhhhhccceeee
Confidence            3458999999999999999999999877543222 22  2223344455  79999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCCCccChHHHHHHH-----HHhCCeEEEEcCCCCCCH
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQH-ASDNVNKVLVGNKADMDESKRAVPTSKGQALA-----DEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i  166 (217)
                      +++|.++..++.....+....... ...+.|+++|+||+|+....   ..++.....     ...+++++++||++|+|+
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi  164 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSIKDHQWHIQACCALTGEGL  164 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC---cHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCH
Confidence            999999999988777655544433 23579999999999986532   222222222     233468999999999999


Q ss_pred             HHHHHHHHHHH
Q 027918          167 EQVFFSIARDI  177 (217)
Q Consensus       167 ~~l~~~l~~~~  177 (217)
                      ++++++|.+.+
T Consensus       165 ~e~~~~L~~~l  175 (177)
T d1zj6a1         165 CQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=157.34  Aligned_cols=161  Identities=22%  Similarity=0.415  Sum_probs=121.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      ..+||+++|.+|||||||+++|.++.+.... ++  ..........++  +.+.+||.+|...+...+...+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PT--IGFNVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CC--SSEEEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cc--cceeeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            3489999999999999999999998876532 33  233444555566  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCCCCc--cChHHHHHHHHHhCCeEEEEcCCCCCCHHHHH
Q 027918           94 VYDVTDESSFNNIRNWIRNIE-QHASDNVNKVLVGNKADMDESKRA--VPTSKGQALADEYGIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus        94 v~d~~~~~s~~~~~~~~~~l~-~~~~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  170 (217)
                      ++|..+..++.....+..... .......|+++|+||.|+.+....  +.......++...+++|+++||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            999998888777777544443 333456899999999998653221  11111122334445799999999999999999


Q ss_pred             HHHHHHHHH
Q 027918          171 FSIARDIKQ  179 (217)
Q Consensus       171 ~~l~~~~~~  179 (217)
                      ++|.+.+.+
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999887743

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=3.4e-25  Score=158.49  Aligned_cols=157  Identities=17%  Similarity=0.089  Sum_probs=110.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTA   83 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~   83 (217)
                      .+--.|+|+|.+|+|||||+|+|++.... ....+..+.+.........+  ..+.+|||||......        ....
T Consensus         3 ~~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~   80 (178)
T d1wf3a1           3 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYE   80 (178)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccc
Confidence            34457999999999999999999987643 23344444455555555666  6899999999754322        2334


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKT  162 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (217)
                      .+.++|++++|+|++++....+ ..|.+.+... ..+.|+++|+||+|+...    ..+..+.+....+ ..++++||++
T Consensus        81 ~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~iSA~~  154 (178)
T d1wf3a1          81 ALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKY----PEEAMKAYHELLPEAEPRMLSALD  154 (178)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSS----HHHHHHHHHHTSTTSEEEECCTTC
T ss_pred             ccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccC----HHHHHHHHHhhcccCceEEEecCC
Confidence            5688999999999987654332 3344455443 346899999999998542    1233444444444 5889999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 027918          163 NLNVEQVFFSIARDI  177 (217)
Q Consensus       163 ~~~i~~l~~~l~~~~  177 (217)
                      |.|+++++++|.+.+
T Consensus       155 ~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         155 ERQVAELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998755

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.2e-25  Score=158.34  Aligned_cols=157  Identities=19%  Similarity=0.210  Sum_probs=115.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|+.|+|||||+++|....+...+       .....+....  +.+.+||++|++.++..|..+++.++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~-------~~~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTG-------IVETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCS-------EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCcc-------EEEEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            589999999999999999999876654332       2234455555  7999999999999999999999999999999


Q ss_pred             EeCCChhhH-----------HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC--------------CCccChHHHHH---
Q 027918           95 YDVTDESSF-----------NNIRNWIRNIEQHASDNVNKVLVGNKADMDES--------------KRAVPTSKGQA---  146 (217)
Q Consensus        95 ~d~~~~~s~-----------~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~--------------~~~~~~~~~~~---  146 (217)
                      +|+++..++           +....|...+......+.|+++++||+|+...              .......+...   
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654           33444555555555567899999999985210              01111222211   


Q ss_pred             --HHHH------hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          147 --LADE------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       147 --~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                        +...      ..+.+++|||++|.|++++|+.+.+.+.+.
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence              1111      124678999999999999999998887654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.2e-25  Score=156.87  Aligned_cols=150  Identities=23%  Similarity=0.281  Sum_probs=112.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc--------hhhhccc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR   86 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~   86 (217)
                      +||+++|.+|+|||||+|+|++.... ....++.+.+.....+...+  ..+.++|++|......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999987654 33444555555555666776  6889999999654322        1334578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      .+|++++++|..+..++.....|...+.... .+.|+++|+||+|+..+.....        ...+.+++++||++|.|+
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~~~--------~~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLGMS--------EVNGHALIRLSARTGEGV  150 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCEEE--------EETTEEEEECCTTTCTTH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHHHH--------HhCCCcEEEEECCCCCCH
Confidence            8999999999998877766666665555544 3689999999999855322211        123468999999999999


Q ss_pred             HHHHHHHHHH
Q 027918          167 EQVFFSIARD  176 (217)
Q Consensus       167 ~~l~~~l~~~  176 (217)
                      ++++++|.+.
T Consensus       151 ~~L~~~l~~~  160 (161)
T d2gj8a1         151 DVLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.6e-24  Score=148.92  Aligned_cols=151  Identities=22%  Similarity=0.330  Sum_probs=116.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEe
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   96 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   96 (217)
                      ||+++|++|+|||||+++|.++.+.. ..++.+  .........+  +.+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWH--PTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCS--CEEEEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceee--EeEEEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988754 334433  3334444555  689999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCCCccChHHHHHHH------------HHhCCeEEEEcCCCC
Q 027918           97 VTDESSFNNIRNWIRNIEQHA-SDNVNKVLVGNKADMDESKRAVPTSKGQALA------------DEYGIKFFETSAKTN  163 (217)
Q Consensus        97 ~~~~~s~~~~~~~~~~l~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~  163 (217)
                      .++...+.....|........ ..+.|+++++||.|+...   ....+.....            ....+.+++|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg  153 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA---VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  153 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC---CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTT
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc---CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCC
Confidence            999998888877766664433 357899999999998542   2222222221            122357999999999


Q ss_pred             CCHHHHHHHHHH
Q 027918          164 LNVEQVFFSIAR  175 (217)
Q Consensus       164 ~~i~~l~~~l~~  175 (217)
                      +|++|+|+||.+
T Consensus       154 ~Gv~e~~~~l~~  165 (166)
T d2qtvb1         154 NGYLEAFQWLSQ  165 (166)
T ss_dssp             BSHHHHHHHHTT
T ss_pred             CCHHHHHHHHhC
Confidence            999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2e-24  Score=154.74  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc-------cchhhhcccCCc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF-------RTITTAYYRGAM   89 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d   89 (217)
                      +|+|+|.+|||||||+|+|++.........+.+.+.......... ...+.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecC-CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            699999999999999999998765443333444444333333322 247899999994321       112234567899


Q ss_pred             EEEEEEeCCChh--hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHH
Q 027918           90 GILLVYDVTDES--SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE  167 (217)
Q Consensus        90 ~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  167 (217)
                      ++++++|.....  .......|+....... .+.|+++|+||+|+...   ...+...+.....+.+++.+||++|.|++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhH---HHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence            999999986542  3333333433322111 24799999999998542   12234445555667899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027918          168 QVFFSIARDIKQ  179 (217)
Q Consensus       168 ~l~~~l~~~~~~  179 (217)
                      ++++.|.+.+..
T Consensus       158 ~L~~~i~~~l~~  169 (180)
T d1udxa2         158 ALKEALHALVRS  169 (180)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh
Confidence            999998888754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.9e-24  Score=154.00  Aligned_cols=160  Identities=20%  Similarity=0.165  Sum_probs=123.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLV   94 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   94 (217)
                      .+||+++|+.|||||||+++|....+.  +.||.+...  ..+....  +.+.+||++|++.++..|..+++.+++++++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIE--YPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEE--EEEECSS--CEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEE--EEEeccc--eeeeeccccccccccccccccccccceeeEe
Confidence            589999999999999999999887764  567777554  3344444  7899999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---------------CCccChHHHHHHH
Q 027918           95 YDVTDES-----------SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES---------------KRAVPTSKGQALA  148 (217)
Q Consensus        95 ~d~~~~~-----------s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~---------------~~~~~~~~~~~~~  148 (217)
                      +|+++..           .++....|...+......+.|+++++||.|+...               ......+....+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998753           3556677888877766668999999999997321               1112233333332


Q ss_pred             HH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          149 DE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       149 ~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ..          ..+.++++||++|.|++++|+.|.+.+.+.
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            21          124578999999999999999998888754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=9e-24  Score=150.02  Aligned_cols=157  Identities=20%  Similarity=0.205  Sum_probs=102.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc---------ccchhhhccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER---------FRTITTAYYR   86 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~   86 (217)
                      .|+|+|.+|+|||||+++|++.... ....+..+.......+....  ..+.+||++|...         +.......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            6999999999999999999986654 22233333333334455555  6899999999432         1223344567


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCH
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV  166 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (217)
                      .+|+++++++.+...... ...++..+...   +.|+++|+||+|+...   ...+...++.+.....++++||++|.|+
T Consensus        80 ~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~---~~pviiv~NK~Dl~~~---~~~~~~~~~~~~~~~~~i~iSAk~g~gi  152 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKE-DESLADFLRKS---TVDTILVANKAENLRE---FEREVKPELYSLGFGEPIPVSAEHNINL  152 (171)
T ss_dssp             TCSEEEEEEETTTCCCHH-HHHHHHHHHHH---TCCEEEEEESCCSHHH---HHHHTHHHHGGGSSCSCEECBTTTTBSH
T ss_pred             cCcEEEEeeccccccccc-ccccccccccc---cccccccchhhhhhhh---hhhHHHHHHHhcCCCCeEEEecCCCCCH
Confidence            899999999987654433 24455555554   6899999999998431   1222223333333457899999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 027918          167 EQVFFSIARDIKQRLA  182 (217)
Q Consensus       167 ~~l~~~l~~~~~~~~~  182 (217)
                      ++++++|.+.+.+...
T Consensus       153 d~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         153 DTMLETIIKKLEEKGL  168 (171)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCC
Confidence            9999999998866543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=7.9e-24  Score=151.40  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=106.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-------cceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-------TTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR   86 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   86 (217)
                      ..++|+++|.+|+|||||+|+|++........       ...+.......+..++  ..+.++|+||+..+.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            45799999999999999999998643221111       1111222222333444  68899999999998888888889


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hHHHHHHHHH----hCCeEEEEcCC
Q 027918           87 GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TSKGQALADE----YGIKFFETSAK  161 (217)
Q Consensus        87 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~~~~~~~~~----~~~~~~~~Sa~  161 (217)
                      .+|++++++|+.++....... .+..+...   +.|+++|+||+|+........ .+..+.+...    .+.+++++||+
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~~---~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hccccccccccccccchhhhh-hhhhhhhc---CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999998864433322 22233332   689999999999865221111 1122222222    13689999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~~  179 (217)
                      +|.|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.3e-23  Score=147.46  Aligned_cols=162  Identities=22%  Similarity=0.153  Sum_probs=106.3

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc------------c
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF------------R   78 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~   78 (217)
                      .+..+||+|+|.+|+|||||+|+|++.... ....+..+.......+..++  ..+.++|+||....            .
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~   82 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN   82 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccchh
Confidence            345699999999999999999999986643 22223333334444556676  57899999995432            2


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH----h-CC
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE----Y-GI  153 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~----~-~~  153 (217)
                      ......++.+|++++|+|++.+.. .....+...+...   +.|+|+|+||+|+...... ...+.......    . ..
T Consensus        83 ~~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~---~~~~i~v~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          83 YRVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR---GRASVVVFNKWDLVVHREK-RYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT---TCEEEEEEECGGGSTTGGG-CHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc---CCceeeeccchhhhcchhh-hhhhHHHHHHHHhcccCCC
Confidence            233445678999999999986543 2223344444443   6899999999998643322 22332222222    1 25


Q ss_pred             eEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          154 KFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       154 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      +++++||++|.|+++|+++|.+.+...
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~~~~  184 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAYASY  184 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            899999999999999999998776543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.6e-23  Score=150.29  Aligned_cols=160  Identities=23%  Similarity=0.256  Sum_probs=109.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEE
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL   93 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   93 (217)
                      +.+||+++|++|||||||+++|.   +...+.||.+.  ....+...+  ..+.+||++|++.++..|..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~--~~~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGI--HEYDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSE--EEEEEEETT--EEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeee--EEEEEeeee--eeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999993   44556677664  444566666  799999999999999999999999999999


Q ss_pred             EEeCCChh----------hHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCC---------------CCccChHHHHHH
Q 027918           94 VYDVTDES----------SFNNIRNWIRNI-EQHASDNVNKVLVGNKADMDES---------------KRAVPTSKGQAL  147 (217)
Q Consensus        94 v~d~~~~~----------s~~~~~~~~~~l-~~~~~~~~pvivv~nK~Dl~~~---------------~~~~~~~~~~~~  147 (217)
                      +++.++..          .++....|+..+ ......+.|+++|+||.|+...               ......+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99998743          233333443333 3333457999999999997321               001122333333


Q ss_pred             HHH-----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          148 ADE-----------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       148 ~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ...           ..+.++++||+++.+++++|+.+.+.+.+.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            222           125577899999999999999998887654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=5e-23  Score=147.50  Aligned_cols=156  Identities=19%  Similarity=0.287  Sum_probs=111.1

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      ....||+++|++|||||||+++|.+..+... .++.+..  ...+..++  ..+.+||+.+...+...+..++...++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4458999999999999999999998876543 2333322  23455666  67899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH-----------------hCCe
Q 027918           93 LVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKVLVGNKADMDESKRAVPTSKGQALADE-----------------YGIK  154 (217)
Q Consensus        93 ~v~d~~~~~s~~~~~~~~~~l~~-~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~  154 (217)
                      +++|..+...+.....++..... ....+.|+++++||.|+...   .....+......                 .+++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKGSVSLKELNARPLE  162 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc---CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCE
Confidence            99999999887777664444433 33357999999999998542   233333333221                 1246


Q ss_pred             EEEEcCCCCCCHHHHHHHHHHH
Q 027918          155 FFETSAKTNLNVEQVFFSIARD  176 (217)
Q Consensus       155 ~~~~Sa~~~~~i~~l~~~l~~~  176 (217)
                      +++|||++|+|++|+|+||.+.
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHh
Confidence            8999999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.2e-23  Score=151.02  Aligned_cols=150  Identities=19%  Similarity=0.203  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------------cchh
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------------RTIT   81 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------------~~~~   81 (217)
                      .|+++|.+|+|||||+|+|++........++.+.+..  .+...    .+.++||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999998776555555554432  23333    3678999994211               1122


Q ss_pred             hhcccCCcEEEEEEeCCChhhHHHH----------HHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh
Q 027918           82 TAYYRGAMGILLVYDVTDESSFNNI----------RNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY  151 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~s~~~~----------~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~  151 (217)
                      ...++.+|++++|+|+.........          ..+++.+..   .+.|+++|+||+|+.....    .....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~~~----~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNVQ----EVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCHH----HHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhhHH----HHHHHHHHHh
Confidence            3455789999999998754322111          112233333   3689999999999754211    2222222222


Q ss_pred             C-------CeEEEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          152 G-------IKFFETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       152 ~-------~~~~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      .       ..++++||++|.|++++++.|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            2       358899999999999999999988765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=5.5e-23  Score=144.23  Aligned_cols=148  Identities=24%  Similarity=0.225  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc---------chhhhcc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR---------TITTAYY   85 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~~~   85 (217)
                      +||+++|.+|+|||||+|+|++.... ....++.+.......+...+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999986543 33344444445555566777  689999999943211         1122245


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCC
Q 027918           86 RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLN  165 (217)
Q Consensus        86 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (217)
                      ..+|++++|+|++++........+. .+     ...++++++||.|+.+.   ...++... ....+.+++++||++|.|
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~---~~~~~~~~-~~~~~~~~~~vSA~~g~g  148 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEK---INEEEIKN-KLGTDRHMVKISALKGEG  148 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCC---CCHHHHHH-HHTCSTTEEEEEGGGTCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccch---hhhHHHHH-HhCCCCcEEEEECCCCCC
Confidence            7899999999999876654433221 11     24789999999998652   22222222 122346899999999999


Q ss_pred             HHHHHHHHHH
Q 027918          166 VEQVFFSIAR  175 (217)
Q Consensus       166 i~~l~~~l~~  175 (217)
                      +++|+++|.+
T Consensus       149 i~~L~~~I~k  158 (160)
T d1xzpa2         149 LEKLEESIYR  158 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.88  E-value=1.1e-22  Score=150.69  Aligned_cols=162  Identities=18%  Similarity=0.125  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEE----------------ECCeEEEEEEeeCCCcccccch
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE----------------LDGKRIKLQIWDTAGQERFRTI   80 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~Dt~G~~~~~~~   80 (217)
                      .|+|+|.+++|||||+++|++.........+.+.........                +......+.|+||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            499999999999999999986422111111111110011111                1112257899999999999888


Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChH------------------
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTS------------------  142 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~------------------  142 (217)
                      ....+..+|++|+|+|+.++-..... ..+..+...   +.|+|+|+||+|+.+........                  
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-EALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             chhcccccceEEEEEecccCcccchh-HHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            88888999999999999875443332 233334333   68999999999986543221110                  


Q ss_pred             -HHHHHHHH------------------hCCeEEEEcCCCCCCHHHHHHHHHHHHHHHhc
Q 027918          143 -KGQALADE------------------YGIKFFETSAKTNLNVEQVFFSIARDIKQRLA  182 (217)
Q Consensus       143 -~~~~~~~~------------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~  182 (217)
                       ...+....                  ...+++++||.+|.|+++|++.|.....+...
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~  221 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLR  221 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence             01111110                  01468999999999999999998877655443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=1.3e-21  Score=141.55  Aligned_cols=159  Identities=14%  Similarity=0.105  Sum_probs=96.8

Q ss_pred             CCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCC--CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc--------
Q 027918            8 ARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT--TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF--------   77 (217)
Q Consensus         8 ~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------   77 (217)
                      .+.+.+..++|+|+|.+|||||||+|+|++....  ....++.+.+.  .......   .+.+.|++|....        
T Consensus        16 ~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~--~~~~~~~---~~~~~d~~~~~~~~~~~~~~~   90 (195)
T d1svia_          16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTL--NFYIIND---ELHFVDVPGYGFAKVSKSERE   90 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCE--EEEEETT---TEEEEECCCBCCCSSCHHHHH
T ss_pred             hHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeec--ccccccc---cceEEEEEeeccccccccccc
Confidence            3455556679999999999999999999986432  22222222222  2222222   3445666652211        


Q ss_pred             -----cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHH--
Q 027918           78 -----RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADE--  150 (217)
Q Consensus        78 -----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~--  150 (217)
                           ...+...+..++++++++|+..+.. .....+++.+...   +.|+++|+||+|+...  ....+..+.+.+.  
T Consensus        91 ~~~~~~~~~~~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~~---~~piivv~NK~D~~~~--~~~~~~~~~~~~~l~  164 (195)
T d1svia_          91 AWGRMIETYITTREELKAVVQIVDLRHAPS-NDDVQMYEFLKYY---GIPVIVIATKADKIPK--GKWDKHAKVVRQTLN  164 (195)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT---TCCEEEEEECGGGSCG--GGHHHHHHHHHHHHT
T ss_pred             hhhhHHhhhhccccchhhhhhhhhcccccc-ccccccccccccc---cCcceechhhccccCH--HHHHHHHHHHHHHhc
Confidence                 1122234466799999999976543 2223445555543   6899999999997532  1122223333332  


Q ss_pred             --hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          151 --YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       151 --~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                        ...+++.+||++|.|+++++++|.+.+
T Consensus       165 ~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         165 IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence              336899999999999999999998876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=7e-23  Score=147.15  Aligned_cols=157  Identities=19%  Similarity=0.182  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc----chh---hhcccCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR----TIT---TAYYRGA   88 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----~~~---~~~~~~~   88 (217)
                      .+|+|+|.+|||||||+|+|.+........+..+.+.........+. ..+.+|||||.....    ...   ...+..+
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCC-cEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            37999999999999999999987654333334344443334444322 368899999963221    111   2234567


Q ss_pred             cEEEEEEeCCChhhHHHHHH--HHHHHHH---hcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEcCC
Q 027918           89 MGILLVYDVTDESSFNNIRN--WIRNIEQ---HASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSAK  161 (217)
Q Consensus        89 d~~i~v~d~~~~~s~~~~~~--~~~~l~~---~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~  161 (217)
                      +.++++++............  +......   ....+.|+++|+||+|+.+.     .+..+.+....  +.+++.+||+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~-----~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH-----HHHHHHHHHHhccCCcEEEEECC
Confidence            88888887665432221111  1111111   12235899999999998642     23334444443  4789999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDIK  178 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~~  178 (217)
                      +|.|++++++.|.+.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         156 TREGLRELLFEVANQLE  172 (185)
T ss_dssp             CSSTTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence            99999999999988763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=2.2e-22  Score=148.46  Aligned_cols=160  Identities=18%  Similarity=0.187  Sum_probs=114.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIL   92 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (217)
                      +..+||+++|+.|||||||++++....+    .+|.|.  ....+.+++  +.+.+||++|+..++..|..++..+++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~--~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii   75 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI--FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAII   75 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC--EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe--EEEEEEECc--EEEEEEecCccceeccchhhhcccccceE
Confidence            3568999999999999999999976543    355553  344566776  89999999999999999999999999999


Q ss_pred             EEEeCCChh----------h-HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC-----Cc------------------
Q 027918           93 LVYDVTDES----------S-FNNIRNWIRNIEQHASDNVNKVLVGNKADMDESK-----RA------------------  138 (217)
Q Consensus        93 ~v~d~~~~~----------s-~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~-----~~------------------  138 (217)
                      +++|.++.+          . .+....|...+......+.|++|++||+|+.+..     ..                  
T Consensus        76 ~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~  155 (221)
T d1azta2          76 FVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDAT  155 (221)
T ss_dssp             EEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCC
T ss_pred             EEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccc
Confidence            999988642          1 2233334444444334579999999999973210     00                  


Q ss_pred             ------cChHHHHHH-----HHHh--------CCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          139 ------VPTSKGQAL-----ADEY--------GIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       139 ------~~~~~~~~~-----~~~~--------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                            .....+..+     .+..        .+..+++||.++.+++.+|..+.+.+++.
T Consensus       156 ~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         156 PEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                  001222222     2111        13457899999999999999988877754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.85  E-value=6.1e-21  Score=138.00  Aligned_cols=163  Identities=16%  Similarity=0.163  Sum_probs=105.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCC---CcccceeeeEEE--EEEEE-------------------CCeEEEEEE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT---SFITTIGIDFKI--RTIEL-------------------DGKRIKLQI   68 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~---~~~~~~~~~~~~--~~~~~-------------------~~~~~~~~l   68 (217)
                      ...++|+++|..++|||||+++|.+.....   ......+.....  .....                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            467899999999999999999998743221   111111111111  11110                   112356999


Q ss_pred             eeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCc-cChHHHHHH
Q 027918           69 WDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRA-VPTSKGQAL  147 (217)
Q Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~-~~~~~~~~~  147 (217)
                      +|+||+..|.......+..+|++++|+|+.++.........+..+....  ..+++++.||+|+.+.... .......++
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHHH
Confidence            9999999999888888899999999999987632233333333444432  2457888999998652211 112233334


Q ss_pred             HHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          148 ADEY---GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       148 ~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ....   .++++++||++|+|+++|++.|.+.+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            3333   26899999999999999998887643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.4e-20  Score=137.25  Aligned_cols=117  Identities=18%  Similarity=0.349  Sum_probs=85.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc-chhhhcccCCcEEEEEE
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR-TITTAYYRGAMGILLVY   95 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~~i~v~   95 (217)
                      +|+|+|++|+|||||+++|.++.+.... ++.+.......+. ++..+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            6999999999999999999998876653 4444444333322 3334789999999998875 46778889999999999


Q ss_pred             eCCChhh-HHHHHHHHHHH-HHh--cCCCCcEEEEEeCCCCCCC
Q 027918           96 DVTDESS-FNNIRNWIRNI-EQH--ASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        96 d~~~~~s-~~~~~~~~~~l-~~~--~~~~~pvivv~nK~Dl~~~  135 (217)
                      |+++..+ +.....|+..+ ...  ...++|++||+||+|++.+
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998765 34444444333 222  2346899999999999753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=9.3e-21  Score=136.54  Aligned_cols=158  Identities=17%  Similarity=0.101  Sum_probs=107.0

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC----------------CCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG----------------SFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      +.++|+++|..++|||||+++|++.                ........+.+++.....+...+  ..++++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~--~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA--RHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS--CEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEece--eeEEeecCcchHHH
Confidence            4689999999999999999999751                11222333444444444454455  68999999999999


Q ss_pred             cchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC---
Q 027918           78 RTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV--PTSKGQALADEYG---  152 (217)
Q Consensus        78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~---  152 (217)
                      .......+..+|++++|+|+.+.-...+ .+.+..+....  ..|+||++||+|+..+....  ...+++.+....+   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            8888888899999999999987643222 23333333332  25788999999986432111  1223444444443   


Q ss_pred             --CeEEEEcCCCC----------CCHHHHHHHHHHH
Q 027918          153 --IKFFETSAKTN----------LNVEQVFFSIARD  176 (217)
Q Consensus       153 --~~~~~~Sa~~~----------~~i~~l~~~l~~~  176 (217)
                        ++++++|+++|          .++.++++.|.+.
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence              67999999987          4777777766543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=8e-20  Score=133.03  Aligned_cols=163  Identities=15%  Similarity=0.158  Sum_probs=100.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCC---cccceeeeE--EEEEEEE------------------------CCeE
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS---FITTIGIDF--KIRTIEL------------------------DGKR   63 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~---~~~~~~~~~--~~~~~~~------------------------~~~~   63 (217)
                      .+.++|+|+|..++|||||+++|++......   .......+.  .......                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            3458999999999999999999986321100   000000000  0000000                        0112


Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccC-hH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVP-TS  142 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~-~~  142 (217)
                      ..+.++|+||+..|.......+..+|++|+|+|+.+.-.-...+..+..+....  -.|+||++||+|+.+...... ..
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHHH
Confidence            478999999999998888888889999999999987521122222222333331  248899999999865322111 12


Q ss_pred             HHHHHHHHh---CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          143 KGQALADEY---GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       143 ~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ....+....   +++++++||++|.|++++++.|...+
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            222333222   36899999999999999998877653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.1e-19  Score=131.86  Aligned_cols=142  Identities=18%  Similarity=0.113  Sum_probs=96.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC------C--C---------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG------S--F---------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER   76 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~------~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   76 (217)
                      +.++|+++|..++|||||+++|+..      .  .         .+......+++.....+..++  .+++|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4689999999999999999999631      0  0         111222445556666667776  6899999999999


Q ss_pred             ccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCcc--ChHHHHHHHHHhC-
Q 027918           77 FRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAV--PTSKGQALADEYG-  152 (217)
Q Consensus        77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-  152 (217)
                      |.......+..+|++|+|+|+.++-...+.+-| ..+...   ++| ++|++||+|+.+.....  ...+++.+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            998888889999999999999887554443333 333333   555 67789999986522111  1233444444433 


Q ss_pred             ----CeEEEEcCC
Q 027918          153 ----IKFFETSAK  161 (217)
Q Consensus       153 ----~~~~~~Sa~  161 (217)
                          ++++..|+.
T Consensus       156 ~~~~i~~i~~sa~  168 (204)
T d2c78a3         156 PGDEVPVIRGSAL  168 (204)
T ss_dssp             CTTTSCEEECCHH
T ss_pred             Ccccceeeeeech
Confidence                567887764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=3.3e-19  Score=126.90  Aligned_cols=157  Identities=17%  Similarity=0.145  Sum_probs=99.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-ccceeeeEEEEEEEECCeEEEEEEeeCCCcccc---------cchhh
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSF-ITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF---------RTITT   82 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~   82 (217)
                      .+--.|+|+|.+|+|||||+|+|++....... ..+.+..........+.  ..+..+|++|....         .....
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccc
Confidence            34456999999999999999999987654222 22222222223333444  46667888874321         11222


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhC-CeEEEEcCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAK  161 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~  161 (217)
                      .....+++++++.|..+...  ....+...+..   ...|+++|+||.|.... ........+.+....+ .+++++||+
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~--~~~~~~~~l~~---~~~~~i~v~~k~d~~~~-~~~~~~~~~~~~~~~~~~~~~~vSA~  154 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTP--DDEMVLNKLRE---GKAPVILAVNKVDNVQE-KADLLPHLQFLASQMNFLDIVPISAE  154 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCH--HHHHHHHHHHS---SSSCEEEEEESTTTCCC-HHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             cchhhcceeEEEEecCccch--hHHHHHHHhhh---ccCceeeeeeeeeccch-hhhhhhHhhhhhhhcCCCCEEEEeCc
Confidence            34456788888888765432  22223333332   35788999999997653 2222344445555555 589999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 027918          162 TNLNVEQVFFSIARDI  177 (217)
Q Consensus       162 ~~~~i~~l~~~l~~~~  177 (217)
                      +|.|++++++.|.+.+
T Consensus       155 ~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         155 TGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTTTHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhC
Confidence            9999999999987765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=1.4e-18  Score=127.34  Aligned_cols=153  Identities=20%  Similarity=0.167  Sum_probs=100.4

Q ss_pred             CCCCCceeEEEEEcCCCCcHHHHHHHHHcC--CCC-------------------------------CCcccceeeeEEEE
Q 027918            9 RADYDCLIKLLLIGDSGVGKSCLLLRFSDG--SFT-------------------------------TSFITTIGIDFKIR   55 (217)
Q Consensus         9 ~~~~~~~~~I~v~G~~~~GKttli~~l~~~--~~~-------------------------------~~~~~~~~~~~~~~   55 (217)
                      +++.+..++|+++|..++|||||+.+|+..  .+.                               .....+.+++....
T Consensus         3 ~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~   82 (222)
T d1zunb3           3 QHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYR   82 (222)
T ss_dssp             STTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEE
T ss_pred             ccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEE
Confidence            455678899999999999999999999641  110                               01112223333333


Q ss_pred             EEEECCeEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCC-cEEEEEeCCCCCC
Q 027918           56 TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNV-NKVLVGNKADMDE  134 (217)
Q Consensus        56 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~-pvivv~nK~Dl~~  134 (217)
                      .+...+  ..+.|+|+||+..|..........+|++++|+|+...-.-..... +..+...   ++ .+|++.||+|+.+
T Consensus        83 ~~~~~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~~---gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          83 YFSTAK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASLL---GIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECSS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHHT---TCCEEEEEEECTTTTT
T ss_pred             EEeccc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHHc---CCCEEEEEEEcccccc
Confidence            344444  689999999999999888888899999999999987543332222 2222332   44 4788899999865


Q ss_pred             CCCccCh---HHHHHHHHHhC-----CeEEEEcCCCCCCHH
Q 027918          135 SKRAVPT---SKGQALADEYG-----IKFFETSAKTNLNVE  167 (217)
Q Consensus       135 ~~~~~~~---~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  167 (217)
                      .......   .++..+....+     ++++++||.+|.|+.
T Consensus       157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            3322222   23344444443     478999999999884

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.4e-19  Score=129.26  Aligned_cols=116  Identities=16%  Similarity=0.305  Sum_probs=82.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccchhhhcc----cCCc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYY----RGAM   89 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~----~~~d   89 (217)
                      +.++|+|+|++|||||||+|+|.+..+.+.    .+.......+..++  ..+.+||+||+..+...+..++    ...+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~----tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----VVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB----CCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe----EEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            457999999999999999999999876543    22223333344444  5789999999988776655543    4557


Q ss_pred             EEEEEEeCCC-hhhHHHHHHHH----HHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           90 GILLVYDVTD-ESSFNNIRNWI----RNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        90 ~~i~v~d~~~-~~s~~~~~~~~----~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      .+++++|+.+ ..+++....|+    ..+......+.|+++|+||+|+.+.
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            8888888764 44555555544    3344555568999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.4e-18  Score=124.21  Aligned_cols=171  Identities=13%  Similarity=0.039  Sum_probs=88.6

Q ss_pred             CCCcccCCCCCCceeEEEEEcCCCCcHHHHHHHHHcCCCCCCccc-ceeeeEEEEEEEECCeEEEEEEeeCCCccccc--
Q 027918            2 AAPPARARADYDCLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFIT-TIGIDFKIRTIELDGKRIKLQIWDTAGQERFR--   78 (217)
Q Consensus         2 ~~~~~~~~~~~~~~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--   78 (217)
                      ++++...+.+.+..++|+++|.+|+|||||+|+|.+......... +.+...........+ ...+...+.++.....  
T Consensus         3 ~~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (188)
T d1puia_           3 MSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEM   81 (188)
T ss_dssp             EEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CC
T ss_pred             eCCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhh
Confidence            344555666778899999999999999999999998765422222 111122222222233 1223222322211111  


Q ss_pred             -----chh---hhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHH
Q 027918           79 -----TIT---TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALAD  149 (217)
Q Consensus        79 -----~~~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~  149 (217)
                           ...   .........++.+.+....... ....++..+...   ..++++++||.|+.+..... ..+...+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~  157 (188)
T d1puia_          82 KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD-LDQQMIEWAVDS---NIAVLVLLTKADKLASGARKAQLNMVREAVL  157 (188)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEEECGGGSCHHHHHHHHHHHHHHHG
T ss_pred             hhhhhhhhhhhhhhhhheeEEEEeecccccchh-HHHHHHHHhhhc---cccccchhhhhhccCHHHHHHHHHHHHHHHH
Confidence                 111   1112234445555555543322 223334444333   57899999999975421111 1122222222


Q ss_pred             Hh--CCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          150 EY--GIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       150 ~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      ..  ..+++.+||++|.|+++|++.|.+.+
T Consensus       158 ~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         158 AFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            22  25789999999999999999886643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2.3e-17  Score=123.87  Aligned_cols=116  Identities=19%  Similarity=0.208  Sum_probs=85.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC--CC----------------CCCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG--SF----------------TTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      +.-+|+++|..++|||||+.+++..  ..                ........++......+.+++  .+++|+||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            3447999999999999999999641  10                011222334445556667777  689999999999


Q ss_pred             cccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           76 RFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        76 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      .|.......++-+|++|+|+|+.+.-...+...| +....+   ++|.++++||+|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~~---~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEKY---KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHTT---TCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHHc---CCCEEEEEeccccccc
Confidence            9999999999999999999999987655555555 333333   7999999999998553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=4.5e-17  Score=121.97  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=84.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCC------------------CCcccceeeeEEEEEEEECCeEEEEEEeeCCCccccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFT------------------TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR   78 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   78 (217)
                      +|+|+|..++|||||+.+|+...-.                  +......++......+.+++  .+++++||||+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            6999999999999999999641100                  00123335555666777777  689999999999999


Q ss_pred             chhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 027918           79 TITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMD  133 (217)
Q Consensus        79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~  133 (217)
                      ......++-+|++|+|+|+.++-.......|. .+...   ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---cccccccccccccc
Confidence            98888999999999999999876555555553 33333   68999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1e-17  Score=123.99  Aligned_cols=151  Identities=16%  Similarity=0.108  Sum_probs=101.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC--CC-----------------------------CCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG--SF-----------------------------TTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+++|..++|||||+.+|+..  ..                             ........+++.....+...+
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            34589999999999999999999631  00                             011234445555556666666


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhH------HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSF------NNIRNWIRNIEQHASDNVN-KVLVGNKADMDE  134 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~  134 (217)
                        .+++|+|+|||..|......-...+|++|+|+|+.....-      ......+.....+   ++| +|+++||+|+.+
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCC
Confidence              6999999999999999888899999999999999864210      0122222222332   454 788899999865


Q ss_pred             CCCcc---ChHHHHHHHHHhC-----CeEEEEcCCCCCCHHH
Q 027918          135 SKRAV---PTSKGQALADEYG-----IKFFETSAKTNLNVEQ  168 (217)
Q Consensus       135 ~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (217)
                      .....   ...++..+....+     ++++.+|+..|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            32221   1233444554443     5789999999988644

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.68  E-value=6.9e-17  Score=120.05  Aligned_cols=153  Identities=17%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCC-------------------------------CCCcccceeeeEEEEEEEECC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSF-------------------------------TTSFITTIGIDFKIRTIELDG   61 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (217)
                      ...++|+|+|..++|||||+.+|+...-                               ........+++.....+..++
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4568999999999999999999953110                               011111122222222333344


Q ss_pred             eEEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCC
Q 027918           62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWIRNIEQHASDNV-NKVLVGNKADMDE  134 (217)
Q Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~-pvivv~nK~Dl~~  134 (217)
                        ..+.++|+||+..|..........+|++++|+|+.+...-.      .....+..+...   ++ ++++++||+|+..
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPS  176 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCc
Confidence              58999999999999998888889999999999998742110      122222222332   34 4788899999864


Q ss_pred             CCCcc--C---hHHHHHHHHHh-------CCeEEEEcCCCCCCHHHHH
Q 027918          135 SKRAV--P---TSKGQALADEY-------GIKFFETSAKTNLNVEQVF  170 (217)
Q Consensus       135 ~~~~~--~---~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~l~  170 (217)
                      .....  .   .++.+.+....       .++++++||++|+|+.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            22111  1   12222222222       2579999999999997754

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=6.7e-17  Score=118.83  Aligned_cols=151  Identities=19%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCC--C-----------------------------CCCcccceeeeEEEEEEEECCe
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGS--F-----------------------------TTSFITTIGIDFKIRTIELDGK   62 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (217)
                      +.++|+|+|..++|||||+.+|+...  .                             ........+.......+..++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            46899999999999999999885310  0                             011122233333334444454 


Q ss_pred             EEEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHH------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCC
Q 027918           63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN------NIRNWIRNIEQHASDNVNKVLVGNKADMDESK  136 (217)
Q Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~  136 (217)
                       ..++|+|||||..|........+-+|++|+|+|+.+.....      ...+-+...... . ..++|+++||+|+....
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~-~~~iIv~iNK~D~~~~~  157 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G-LDQLIVAVNKMDLTEPP  157 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T-CTTCEEEEECGGGSSST
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-C-CCceEEEEEcccCCCcc
Confidence             68999999999999999999999999999999998853211      111111112222 1 24688899999985422


Q ss_pred             Ccc-----ChHHHHHHHHHhC-----CeEEEEcCCCCCCHHH
Q 027918          137 RAV-----PTSKGQALADEYG-----IKFFETSAKTNLNVEQ  168 (217)
Q Consensus       137 ~~~-----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  168 (217)
                      ...     ....+..+...++     ++++++||..|.|+.+
T Consensus       158 ~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         158 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             ccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            111     1122333444333     5789999999998753

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.62  E-value=5.5e-15  Score=110.60  Aligned_cols=120  Identities=18%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCC-CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccc-------hhh--
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTT-SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITT--   82 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~--   82 (217)
                      ...++|+|+|.+|+|||||+|.|++..... ...+..+.+........++  ..+.|+||||......       ...  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            457999999999999999999999876543 3334444455556666777  6899999999543211       111  


Q ss_pred             hcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 027918           83 AYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN--VNKVLVGNKADMDE  134 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~pvivv~nK~Dl~~  134 (217)
                      ......|+++||++++...--......+..+...++.+  .+++||+||.|...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            12245788999988876432222233344444443322  57899999999754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.1e-15  Score=116.93  Aligned_cols=158  Identities=13%  Similarity=0.125  Sum_probs=91.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcccceeeeEEEEEEEECCeEEEEEEeeCCCcccccch-----hhh
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSFTT-----SFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI-----TTA   83 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----~~~   83 (217)
                      ..++|+|+|.+|+|||||+|.|.+.....     +....++.+...+.. .++  -.+.||||||.......     ...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~--~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNI--PNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSC--TTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCC--CeEEEEeCCCcccccccHHHHHHHh
Confidence            35899999999999999999999854322     111112222222221 122  25889999996543221     222


Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------CCCccChHH----H----HHHHH
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE------SKRAVPTSK----G----QALAD  149 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~------~~~~~~~~~----~----~~~~~  149 (217)
                      .+..+|+++++.|..-.+  . -..++..+...   +.|+++|.||+|...      .......+.    +    .....
T Consensus       132 ~~~~~d~~l~~~~~~~~~--~-d~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~  205 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKK--N-DIDIAKAISMM---KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR  205 (400)
T ss_dssp             TGGGCSEEEEEESSCCCH--H-HHHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCH--H-HHHHHHHHHHc---CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHH
Confidence            356788888877653222  2 22344455544   689999999999521      011111111    1    11122


Q ss_pred             HhC---CeEEEEcCCC--CCCHHHHHHHHHHHHHHH
Q 027918          150 EYG---IKFFETSAKT--NLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       150 ~~~---~~~~~~Sa~~--~~~i~~l~~~l~~~~~~~  180 (217)
                      ..+   .++|.+|..+  ..++.++.+.+.+.+...
T Consensus       206 ~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         206 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             HcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            223   3678888764  458999998888776543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=5.8e-15  Score=113.95  Aligned_cols=125  Identities=20%  Similarity=0.208  Sum_probs=84.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC--CC--------------CCCcccceeeeEEEEEEEE--------------CCeEE
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG--SF--------------TTSFITTIGIDFKIRTIEL--------------DGKRI   64 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~--~~--------------~~~~~~~~~~~~~~~~~~~--------------~~~~~   64 (217)
                      .-+|+|+|..++|||||+.+|+..  ..              ........++......+.+              +++..
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            336999999999999999999631  00              0111122222222222222              33457


Q ss_pred             EEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           65 KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      .++|+||||+..|.......++-+|++++|+|+.++-...+..-|......    ++|+++|+||+|..........++
T Consensus        97 ~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKiDr~~~el~~~~~~  171 (341)
T d1n0ua2          97 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKVDRALLELQVSKED  171 (341)
T ss_dssp             EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECHHHHHHTSCCCHHH
T ss_pred             EEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECcccccccHHhhHHH
Confidence            899999999999999999999999999999999987666655555444333    789999999999643333333333

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.45  E-value=9.1e-15  Score=108.38  Aligned_cols=112  Identities=14%  Similarity=0.023  Sum_probs=65.0

Q ss_pred             EEEEEeeCCCcccccchhhh---c--ccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITTA---Y--YRGAMGILLVYDVTDE---SSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~---~--~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      ..+.++|+||+..+......   +  ....+.+++++|+...   ................  ...|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            45889999998765332211   1  1245678899997543   3222222111111111  25899999999998652


Q ss_pred             CCccC----------------------hHHHHH---HHHH--hCCeEEEEcCCCCCCHHHHHHHHHHHH
Q 027918          136 KRAVP----------------------TSKGQA---LADE--YGIKFFETSAKTNLNVEQVFFSIARDI  177 (217)
Q Consensus       136 ~~~~~----------------------~~~~~~---~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~  177 (217)
                      .....                      ......   ....  ..++++++||++|+|++++++.|.+++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            11000                      000000   0111  236899999999999999999887764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.30  E-value=5.8e-12  Score=96.58  Aligned_cols=105  Identities=12%  Similarity=0.122  Sum_probs=61.0

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSK  143 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~  143 (217)
                      +.+.|+.|.|.---.   .....-+|..++|......+.....+.   -+..     .+=++|+||+|+.+. .......
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE-----~aDi~vvNKaD~~~~-~~~~~~~  211 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDG-ERRASAA  211 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCC-HHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhh---hHhh-----hhheeeEeccccccc-hHHHHHH
Confidence            456677777642211   223345899999999887654432222   1111     233899999998652 2112222


Q ss_pred             HHHHHHH----------hCCeEEEEcCCCCCCHHHHHHHHHHHHHHH
Q 027918          144 GQALADE----------YGIKFFETSAKTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       144 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  180 (217)
                      ...+...          ...+++.+||.+|.|+++++++|.+.....
T Consensus       212 ~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         212 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            2222221          225799999999999999999998766543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.2e-12  Score=98.17  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCcc-ChHHHHHHHHH-------hCCeE
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAV-PTSKGQALADE-------YGIKF  155 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~-~~~~~~~~~~~-------~~~~~  155 (217)
                      +...+|.+++|......+.....+..   +..     .+=++|+||+|+....... ...+.......       ...++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e-----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKG---LME-----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHH---HHH-----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchh---hhc-----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            44678999998877555443333222   222     2338889999985421111 11111111111       12479


Q ss_pred             EEEcCCCCCCHHHHHHHHHHHHHH
Q 027918          156 FETSAKTNLNVEQVFFSIARDIKQ  179 (217)
Q Consensus       156 ~~~Sa~~~~~i~~l~~~l~~~~~~  179 (217)
                      +.+||.+|.|++++++.|.+....
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998776543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.26  E-value=3.8e-11  Score=90.48  Aligned_cols=84  Identities=19%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEEECCe------------E---EEEEEeeCCCcccc--
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK------------R---IKLQIWDTAGQERF--   77 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~l~Dt~G~~~~--   77 (217)
                      .++|.+||.|+||||||+++|.+........++.+.+...-.+.+.+.            +   ..+.++|+||.-.-  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            379999999999999999999988766555666666665555554322            1   35889999995321  


Q ss_pred             --c---chhhhcccCCcEEEEEEeCC
Q 027918           78 --R---TITTAYYRGAMGILLVYDVT   98 (217)
Q Consensus        78 --~---~~~~~~~~~~d~~i~v~d~~   98 (217)
                        .   ......++++|++++|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              1   22334568999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.7e-10  Score=87.62  Aligned_cols=117  Identities=15%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcc-ccee--eeEEEEE-----------------------------------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFI-TTIG--IDFKIRT-----------------------------------   56 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~-~~~~--~~~~~~~-----------------------------------   56 (217)
                      .++|+|+|..++|||||||.|++..+-+... +++.  +......                                   
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  105 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence            5689999999999999999999987633222 2211  1111000                                   


Q ss_pred             -------------EEECCeEEEEEEeeCCCcccc-------------cchhhhcccCCcE-EEEEEeCCChhhHHHHHHH
Q 027918           57 -------------IELDGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMG-ILLVYDVTDESSFNNIRNW  109 (217)
Q Consensus        57 -------------~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~-~i~v~d~~~~~s~~~~~~~  109 (217)
                                   +.... ...+.|+|+||....             ..+...|+...+. +++|.++...-+......+
T Consensus       106 ~~~~~~~~~i~l~~~~p~-~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         106 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCcCcCCccEEEEEcCCC-CCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                         00000 124889999995321             2334456666664 5556666655444444445


Q ss_pred             HHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918          110 IRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus       110 ~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      .+.+   .....++++|+||+|...+
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCT
T ss_pred             HHHh---CcCCCceeeEEeccccccc
Confidence            4443   3335689999999997653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.09  E-value=1.1e-10  Score=89.66  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEEEE--E--------------------CCeEEEEEEeeCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIE--L--------------------DGKRIKLQIWDTAG   73 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~~~--~--------------------~~~~~~~~l~Dt~G   73 (217)
                      ++|.++|.|++|||||+|.|.+........|++|.+...-...  .                    ......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999998776655556555444322211  0                    01236799999999


Q ss_pred             cccc-------cchhhhcccCCcEEEEEEeCCC
Q 027918           74 QERF-------RTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        74 ~~~~-------~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                      .-..       .......++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321       1122334578999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.06  E-value=2.6e-10  Score=86.91  Aligned_cols=116  Identities=16%  Similarity=0.227  Sum_probs=67.5

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcCCCCCCcccceeeeEEEEE--------------------------------------
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRT--------------------------------------   56 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~~~~~~~~~~~~~~~~~~~--------------------------------------   56 (217)
                      .++|+|+|..++|||||||.|++..+.+....+.+.......                                      
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  103 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII  103 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence            468999999999999999999997764332211111111110                                      


Q ss_pred             ---------------------EEECCeEEEEEEeeCCCccc-------------ccchhhhcccCCcEEEEEE-eCCChh
Q 027918           57 ---------------------IELDGKRIKLQIWDTAGQER-------------FRTITTAYYRGAMGILLVY-DVTDES  101 (217)
Q Consensus        57 ---------------------~~~~~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~  101 (217)
                                           +.... ...+.|+|+||...             +..++..|+..++.+++++ +.....
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~  182 (306)
T d1jwyb_         104 RDTDRMTGKNKGISAQPINLKIYSPH-VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL  182 (306)
T ss_dssp             HHCC--------CCCCCEEEEEEETT-SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred             HHHHHhcCCCCcccccceEEEecCCC-CCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccc
Confidence                                 00000 12578999999542             1244566788888766665 443332


Q ss_pred             hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 027918          102 SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDE  134 (217)
Q Consensus       102 s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~  134 (217)
                      .......+...+   .+...++++|+||+|...
T Consensus       183 ~~~~~~~~~~~~---~~~~~r~i~Vitk~D~~~  212 (306)
T d1jwyb_         183 ANSDALQLAKEV---DPEGKRTIGVITKLDLMD  212 (306)
T ss_dssp             TTCSHHHHHHHH---CSSCSSEEEEEECTTSSC
T ss_pred             cccHHHHHHHHh---CcCCCeEEEEEecccccc
Confidence            222333343333   333568999999999754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=3.1e-10  Score=86.11  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=62.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCCC-CCCcccceeeeEEEEEEEECCe---------------EEEEEEeeCCCcccc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGSF-TTSFITTIGIDFKIRTIELDGK---------------RIKLQIWDTAGQERF   77 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~   77 (217)
                      ..++|.++|.|+||||||+|.|++... .....|++|++.....+.+.+.               ...+.++|.||...-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g   88 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   88 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence            448999999999999999999998654 3455666666665555554321               257899999984421


Q ss_pred             -------cchhhhcccCCcEEEEEEeCCC
Q 027918           78 -------RTITTAYYRGAMGILLVYDVTD   99 (217)
Q Consensus        78 -------~~~~~~~~~~~d~~i~v~d~~~   99 (217)
                             .......++.+|++++|+|+.+
T Consensus        89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccHHHHHHHhhccceeEEEEeccC
Confidence                   1234445689999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.68  E-value=9.6e-09  Score=76.80  Aligned_cols=60  Identities=27%  Similarity=0.312  Sum_probs=38.7

Q ss_pred             CCCceeEEEEEcCCCCcHHHHHHHHHcCCCC-CCcccceeeeEEEEEEEECCeEEEEEEeeCCCcc
Q 027918           11 DYDCLIKLLLIGDSGVGKSCLLLRFSDGSFT-TSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE   75 (217)
Q Consensus        11 ~~~~~~~I~v~G~~~~GKttli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~   75 (217)
                      .....++|+|+|.||+|||||+|+|.+.... ....|+.|.+.  ..+..+.   .+.++||||..
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~--~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ--QWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccc--eEEECCC---CeEEecCCCcc
Confidence            3456799999999999999999999997654 44555555433  2333433   58999999954

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.47  E-value=1.8e-07  Score=67.12  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=60.8

Q ss_pred             cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHh--CCeEEEEcC
Q 027918           84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEY--GIKFFETSA  160 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa  160 (217)
                      ...+.|.+++|+++.+|+ +...+.+++-.....   ++|.+||+||+||.++   ...+....+...+  +.+++.+|+
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~---~~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDE---DDLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCH---HHHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCH---HHHHHHHHhhcccccceeEEEecc
Confidence            457899999999998865 456677776666554   7899999999999642   1222333333332  368899999


Q ss_pred             CCCCCHHHHHHHH
Q 027918          161 KTNLNVEQVFFSI  173 (217)
Q Consensus       161 ~~~~~i~~l~~~l  173 (217)
                      +++.|++++.+.|
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999987765

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.36  E-value=3.9e-06  Score=57.81  Aligned_cols=22  Identities=32%  Similarity=0.804  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999987

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=3e-07  Score=65.61  Aligned_cols=93  Identities=22%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             EEEEEeeCCCcccccch----hhhcc---c-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY---R-----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~---~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.|+||+|...++..    ...+.   .     ..+-.++|+|+....  +.+..........    -+--+++||.|
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lI~TKlD  167 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEAV----NVTGIILTKLD  167 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHHS----CCCEEEEECGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhcccc----CCceEEEeccc
Confidence            46899999995433221    11111   1     135688899986543  3333333333332    13468899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      -..     ..=.+..++...+.|+.+++  +|.+++++
T Consensus       168 e~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         168 GTA-----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             GCS-----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCC-----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            422     22345567778888887776  57666554

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.31  E-value=1.1e-07  Score=68.34  Aligned_cols=58  Identities=24%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCC------cccceeeeEEEEEEEECCeEEEEEEeeCCCcccc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSFTTS------FITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF   77 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~   77 (217)
                      ..+++|++|+|||||+|+|.......+      ...+-.++....-+.+.+   .-.|+||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~---gg~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDF---GGYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTT---SCEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECC---CcEEEeCCccccc
Confidence            578999999999999999987533221      111111122222334433   2468899997554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=3e-07  Score=65.38  Aligned_cols=93  Identities=18%  Similarity=0.146  Sum_probs=53.4

Q ss_pred             EEEEEeeCCCcccccc----hhhh---ccc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           64 IKLQIWDTAGQERFRT----ITTA---YYR-----GAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~----~~~~---~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.|+||+|....+.    ....   ..+     ..+-.++|.|+....  +.+..........    -+--+++||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~~----~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV----GLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTH--HHHHHHHHHHHHS----CCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCc--chHHHHhhhhhcc----CCceEEEeecC
Confidence            4689999999433221    1111   121     245788899986543  2333333223322    13367899999


Q ss_pred             CCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       132 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                      -..     ..=.+.......+.|+.+++  +|++++++
T Consensus       166 e~~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 GTA-----KGGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TCT-----TTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCC-----CccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            422     23445566778888887776  67777543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.25  E-value=1.9e-07  Score=67.21  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHH---HHHHHHhCCeEEEEc
Q 027918           84 YYRGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKG---QALADEYGIKFFETS  159 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~S  159 (217)
                      ...+.|.+++|+++.+|+ +...+.+++-.....   +++.+||+||+||.++.  ...+.+   .......+.+++.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQ--DTEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCH--HHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccH--HHHHHHHHHHHHHhhccccceeee
Confidence            457899999999998764 466676666555444   78999999999996531  122222   233455688999999


Q ss_pred             CCCCCCHHHHHHHH
Q 027918          160 AKTNLNVEQVFFSI  173 (217)
Q Consensus       160 a~~~~~i~~l~~~l  173 (217)
                      ++++.|++++..+|
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999988876544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=9.4e-06  Score=58.25  Aligned_cols=25  Identities=32%  Similarity=0.368  Sum_probs=21.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +.+=++|.|.-|||||||+++++..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence            3456889999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=1.8e-07  Score=67.34  Aligned_cols=22  Identities=45%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..+++|++|+|||||+|+|...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999999875

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=2.2e-06  Score=63.64  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCCccChHHHHHHHHHhCCeEEEEcC
Q 027918           81 TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSA  160 (217)
Q Consensus        81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (217)
                      ....+..+|++++|+|+.+|-+..+-  .   +..... +.|+|+|+||+|+.+.   ...+...++....+...+.+|+
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~--~---l~~~~~-~Kp~IlVlNK~DLv~~---~~~~~w~~~f~~~~~~~i~isa   79 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP--M---IEDILK-NKPRIMLLNKADKADA---AVTQQWKEHFENQGIRSLSINS   79 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH--H---HHHHCS-SSCEEEEEECGGGSCH---HHHHHHHHHHHTTTCCEEECCT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH--H---HHHHHc-CCCeEEEEECccCCch---HHHHHHHHHHHhcCCccceeec
Confidence            44568899999999999887654321  1   222222 5799999999998642   1223333444455678999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 027918          161 KTNLNVEQVFFSIARDIKQR  180 (217)
Q Consensus       161 ~~~~~i~~l~~~l~~~~~~~  180 (217)
                      .++.+..++...+.+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          80 VNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TTCTTGGGHHHHHHHHHHHH
T ss_pred             ccCCCccccchhhhhhhhhh
Confidence            99999998888777766554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.07  E-value=1.4e-06  Score=61.90  Aligned_cols=93  Identities=14%  Similarity=0.107  Sum_probs=53.5

Q ss_pred             EEEEEeeCCCcccccc------hhhhcc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRT------ITTAYY--RGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDES  135 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~  135 (217)
                      ..+.|+||+|...+..      ....+.  ...+-+++|+++.....  .+..........   + +--+++||.|-.. 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~~~~---~-~~~lI~TKlDet~-  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFNQAS---K-IGTIIITKMDGTA-  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHHHC---T-TEEEEEECTTSCS-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhhccc---C-cceEEEecccCCC-
Confidence            4789999999543321      111111  23466888888876432  222222222221   2 2357799999422 


Q ss_pred             CCccChHHHHHHHHHhCCeEEEEcCCCCCCHHHH
Q 027918          136 KRAVPTSKGQALADEYGIKFFETSAKTNLNVEQV  169 (217)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  169 (217)
                          ..=.+..++...+.|+..++  +|.+++++
T Consensus       168 ----~~G~~l~~~~~~~lPi~~it--~Gq~v~DL  195 (211)
T d1j8yf2         168 ----KGGGALSAVAATGATIKFIG--TGEKIDEL  195 (211)
T ss_dssp             ----CHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             ----cccHHHHHHHHHCcCEEEEe--CCCCcccC
Confidence                34556667778888887776  57666543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.03  E-value=1.5e-06  Score=61.59  Aligned_cols=91  Identities=12%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             EEEEEeeCCCcccccch----hhhcc--------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAYY--------RGAMGILLVYDVTDES-SFNNIRNWIRNIEQHASDNVNKVLVGNKA  130 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~~--------~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~~pvivv~nK~  130 (217)
                      ..+.|+||+|...+...    +..+.        ...+-.++|+|+.... ....+...+   ...   + +--+++||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~---~~~---~-~~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFH---EAV---G-LTGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHH---HHH---C-CSEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhh---hcc---C-CceEEEecc
Confidence            47899999995443321    11111        2346688899987654 233333322   222   1 226789999


Q ss_pred             CCCCCCCccChHHHHHHHHHhCCeEEEEcCCCCCCHHH
Q 027918          131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQ  168 (217)
Q Consensus       131 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (217)
                      |-..     ..=.+..+....+.|+.+++  +|++.++
T Consensus       162 Det~-----~~G~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         162 DGTA-----KGGVLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TSSC-----CCTTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCC-----CccHHHHHHHHHCCCEEEEe--CCCChHh
Confidence            9422     22334456777888877666  3554443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=2.4e-06  Score=60.62  Aligned_cols=85  Identities=20%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             EEEEEeeCCCcccccch----hhhc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCCC
Q 027918           64 IKLQIWDTAGQERFRTI----TTAY--YRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKR  137 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl~~~~~  137 (217)
                      ..+.|+||+|...++..    +..+  ....+-+++|.++.....  .+. ....+.....   .--+++||.|-..   
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~~-~~~~f~~~~~---~~~~I~TKlDe~~---  163 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--ALS-VARAFDEKVG---VTGLVLTKLDGDA---  163 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HHH-HHHHHHHHTC---CCEEEEECGGGCS---
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HHH-HHHHHHhhCC---CCeeEEeecCccc---
Confidence            47899999995543321    1112  235678899999876542  222 2222222221   2257899999422   


Q ss_pred             ccChHHHHHHHHHhCCeEEEEc
Q 027918          138 AVPTSKGQALADEYGIKFFETS  159 (217)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~S  159 (217)
                        ..-.+..++...+.|+.+++
T Consensus       164 --~~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         164 --RGGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             --SCHHHHHHHHHHCCCEEEEC
T ss_pred             --cchHHHHHHHHHCCCEEEEe
Confidence              23455667788888877665

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.73  E-value=7.4e-06  Score=56.52  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+|+|.|++|+|||||++.|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.72  E-value=7.2e-06  Score=55.93  Aligned_cols=23  Identities=39%  Similarity=0.605  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+|+|+|||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999965

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.70  E-value=1.2e-05  Score=54.94  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +..++|+|+|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            34589999999999999999999763

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.3e-05  Score=54.40  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +-|+|+|.+|||||||+++|..
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=1.9e-05  Score=54.43  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.56  E-value=2.6e-05  Score=54.37  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...++|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            34589999999999999999999863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.51  E-value=2.9e-05  Score=54.05  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++|+++|+|||||||+...|..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999975

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.51  E-value=2.6e-05  Score=53.87  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++|+|+|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999999764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.50  E-value=2.8e-05  Score=51.88  Aligned_cols=20  Identities=40%  Similarity=0.527  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |++.|+||||||||++.|..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.9e-05  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.680  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++|+|+|+|||||||+.+.|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.48  E-value=4e-05  Score=53.45  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=21.4

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .....|+|+|+|||||||+.++|..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3446789999999999999999975

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.46  E-value=2.5e-05  Score=54.38  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.9

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +++|+|+|+|||||||+.+.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=3.4e-05  Score=53.11  Aligned_cols=22  Identities=18%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=4e-05  Score=52.85  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+|+|+|||||||+.+.|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999975

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=6.9e-05  Score=52.28  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=22.4

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+...-|+|+|+|||||||+...|..
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456799999999999999999976

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.38  E-value=4.6e-05  Score=51.67  Aligned_cols=22  Identities=32%  Similarity=0.501  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -|+|.|++||||||+.+.|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999999853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.35  E-value=5.3e-05  Score=51.42  Aligned_cols=20  Identities=20%  Similarity=0.400  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |.|+|.+|||||||+++|..
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=5.1e-05  Score=51.51  Aligned_cols=22  Identities=36%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.3e-05  Score=50.45  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999999764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=6.1e-05  Score=51.56  Aligned_cols=21  Identities=38%  Similarity=0.716  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+|.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998865

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=8e-05  Score=51.80  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.|+|+|+|||||||....|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=8.4e-05  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.262  Sum_probs=20.1

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..=|+++|.|||||||+++++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.18  E-value=0.00013  Score=51.26  Aligned_cols=23  Identities=13%  Similarity=0.325  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +.=|+++|.||||||||.++|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35589999999999999999975

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.16  E-value=0.00011  Score=49.74  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+++|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988854

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.14  E-value=0.00012  Score=50.15  Aligned_cols=20  Identities=25%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999998854

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00012  Score=52.89  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999884

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00012  Score=50.75  Aligned_cols=21  Identities=38%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+|++|||||||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.00013  Score=51.23  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|+.|||||||++.+.+-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5789999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00042  Score=51.01  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----cccceeeeEEEEEEEE-CCeEEEEEEeeCCCccc
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDGSFTTS-----FITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER   76 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~   76 (217)
                      .+..=|.|+|+.++|||+|+|.|++....-.     ...|.|  +......+ ++....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~G--iw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKG--IWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCS--EEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCc--eEEEEeeccCCCCceEEEEecccccc
Confidence            3455799999999999999999998653211     123333  32222222 33346789999999653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.07  E-value=0.00015  Score=49.91  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=18.0

Q ss_pred             eEEE-EEcCCCCcHHHHHHHHHc
Q 027918           16 IKLL-LIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~-v~G~~~~GKttli~~l~~   37 (217)
                      +||+ |.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3554 579999999999998854

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00016  Score=48.93  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|+|++||||||+.+.|..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66799999999999999975

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=51.70  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5899999999999999999873

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00015  Score=49.87  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+|++|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.05  E-value=0.00016  Score=52.18  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.04  E-value=0.00017  Score=48.92  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999999764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.02  E-value=0.00021  Score=48.50  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +-|.++|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999888864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00017  Score=52.49  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|++|||||||++.|.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            7999999999999999999873

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.00  E-value=0.00017  Score=51.52  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            6899999999999999988774

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.99  E-value=0.0002  Score=51.44  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|+.|||||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3568999999999999999984

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00021  Score=49.15  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|+||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=52.02  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            7999999999999999999874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.98  E-value=0.00024  Score=51.78  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-|++.|+||+|||||+..|.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            45999999999999999999874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.97  E-value=0.0002  Score=48.47  Aligned_cols=21  Identities=29%  Similarity=0.411  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            556699999999999999764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.96  E-value=0.00022  Score=51.19  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.++|++|||||||++.+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5899999999999999999884

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00023  Score=49.43  Aligned_cols=20  Identities=45%  Similarity=0.680  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|+|++|||||||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00022  Score=52.65  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|+|+.|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6999999999999999999874

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.94  E-value=0.00021  Score=49.63  Aligned_cols=21  Identities=19%  Similarity=0.441  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|+|+|||||||+...|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999976

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.92  E-value=0.00026  Score=48.13  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.92  E-value=0.00017  Score=51.43  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++++|++|||||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999984

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0014  Score=47.01  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...++++.|++|+||||++..++..
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3347999999999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.90  E-value=0.00028  Score=50.60  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=21.7

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ....+++.|+||+||||+++.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999863

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.88  E-value=0.00026  Score=50.78  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...+++.|+||+|||++++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            347999999999999999999763

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.87  E-value=0.00028  Score=50.72  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.++|++|||||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999999874

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00029  Score=49.56  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      =|+|+||+|||||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            3789999999999999999764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.87  E-value=0.00026  Score=51.05  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.++|+.|||||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5889999999999999999984

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0002  Score=51.33  Aligned_cols=22  Identities=45%  Similarity=0.650  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5899999999999999999873

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.84  E-value=0.00028  Score=50.74  Aligned_cols=23  Identities=35%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -+.++|+.|||||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00026  Score=50.94  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.00044  Score=47.71  Aligned_cols=24  Identities=29%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+=|.|-|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346699999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00022  Score=49.30  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.-|.++|.|||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999865

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.00057  Score=51.45  Aligned_cols=23  Identities=17%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+|+|.|++|||||||++.|+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00046  Score=47.86  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +++++|+||+|||+++..|...
T Consensus        45 n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHHH
Confidence            7999999999999999888764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.74  E-value=0.00021  Score=51.96  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+|+|++|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            799999999999999998876

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.69  E-value=0.00042  Score=50.35  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.++|+.|||||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            4799999999999999999985

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.67  E-value=0.00025  Score=51.02  Aligned_cols=22  Identities=23%  Similarity=0.448  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6899999999999999999984

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.66  E-value=0.00047  Score=50.18  Aligned_cols=22  Identities=36%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -+.|+|+.|||||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6899999999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.64  E-value=0.0012  Score=44.07  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-|++-|+-|||||||++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            46888999999999999998764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00059  Score=49.86  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++++||+||+|||++++.|...
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            8999999999999999988764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.62  E-value=0.0006  Score=48.54  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..+++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.62  E-value=0.00059  Score=48.18  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .+.|+|-|+|||||||+...|..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999999975

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00099  Score=47.95  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=21.4

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...+++.|+||+||||++..+++.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999874

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.54  E-value=0.00099  Score=48.09  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-.|++.|+||+|||+|++.+.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999986

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00086  Score=47.09  Aligned_cols=23  Identities=17%  Similarity=0.255  Sum_probs=20.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998854

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.0012  Score=45.51  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      +++-|+|.|.+||||||+.+.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            45789999999999999999886543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.44  E-value=0.00085  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.++|.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.43  E-value=0.00079  Score=50.34  Aligned_cols=22  Identities=36%  Similarity=0.658  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+++||||+|||.|.+.+...
T Consensus        51 ~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          51 NILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhhc
Confidence            5899999999999999999863

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00088  Score=47.12  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      =|+|.|+|||||+|+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578889999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.38  E-value=0.00097  Score=46.11  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ...+-|+|-|..||||||+++.|...
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            34478999999999999999999763

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.33  E-value=0.00095  Score=48.61  Aligned_cols=21  Identities=29%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      ++|.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            456699999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.0011  Score=47.86  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|++.|+||+|||+|++.+.+.
T Consensus        44 giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHHH
Confidence            5999999999999999999963

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0011  Score=47.02  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++.|++|+||||+++.+...
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHHH
Confidence            46999999999999999988753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.22  E-value=0.0011  Score=52.10  Aligned_cols=21  Identities=38%  Similarity=0.759  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+++||+|+|||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999965

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.22  E-value=0.12  Score=36.98  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             EEEEEeeCCCcccccch-hhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcC-CCCcE-EEEEeCCCCCCCCCccC
Q 027918           64 IKLQIWDTAGQERFRTI-TTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNK-VLVGNKADMDESKRAVP  140 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~pv-ivv~nK~Dl~~~~~~~~  140 (217)
                      +.+.++|+|+....... .......+|.++++.+. +..++..+......+..... .+.++ -+|.|+.+...     .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~-----~  189 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN-----E  189 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC-----C
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC-----c
Confidence            46888899864432221 12222456777766665 45666666666666655432 22333 37789987533     3


Q ss_pred             hHHHHHHHHHhCCeEEE
Q 027918          141 TSKGQALADEYGIKFFE  157 (217)
Q Consensus       141 ~~~~~~~~~~~~~~~~~  157 (217)
                      .+..+.+++..+.+++.
T Consensus       190 ~~~~~~~~~~~~~~~~~  206 (269)
T d1cp2a_         190 YELLDAFAKELGSQLIH  206 (269)
T ss_dssp             HHHHHHHHHHHTCCEEE
T ss_pred             cchhhhhHhhcCCeEEE
Confidence            45667777778876554

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0014  Score=46.65  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++.|++|+||||+++.++..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            45899999999999999999764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.19  E-value=0.0014  Score=45.99  Aligned_cols=24  Identities=29%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...-|.+.|.||||||||.+.|..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.18  E-value=0.0012  Score=47.76  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0013  Score=46.54  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++++.|++|+||||++..++..
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            36899999999999999999864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0014  Score=47.49  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.|++.|+||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3599999999999999999986

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.12  E-value=0.0015  Score=47.42  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -.|++.|+||+|||+|++.+.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            36999999999999999999874

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0019  Score=44.95  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0021  Score=46.77  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.2

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .-.|++.|++|+|||+|++.+.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            346999999999999999999874

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0043  Score=46.06  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             CCceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           12 YDCLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        12 ~~~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ...++=|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            35568899999999999999887754

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.61  E-value=0.0022  Score=49.30  Aligned_cols=21  Identities=33%  Similarity=0.708  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      ++++||+||+|||++++.|..
T Consensus        45 n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHH
Confidence            679999999999999876654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0034  Score=43.83  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999998864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0069  Score=41.88  Aligned_cols=24  Identities=13%  Similarity=0.111  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      =+.|.|+||+|||+|...++.+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999876543

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.49  E-value=0.005  Score=41.74  Aligned_cols=24  Identities=42%  Similarity=0.591  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      =|++.|++|+||||+.-.|.....
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            589999999999999999887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.004  Score=43.58  Aligned_cols=20  Identities=25%  Similarity=0.355  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999998888754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0072  Score=42.10  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      +-|+|.|.+||||||+.+.|....
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G   27 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLG   27 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCC
Confidence            458899999999999999886543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.32  E-value=0.0057  Score=41.48  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      .=|++.|++|+||||+...|....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999999987554

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.25  E-value=0.0047  Score=43.72  Aligned_cols=23  Identities=26%  Similarity=0.198  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      -++|.|+||+|||+|...++...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            58899999999999999987643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.24  E-value=0.0021  Score=48.35  Aligned_cols=21  Identities=33%  Similarity=0.593  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      +|+++|+||+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.23  E-value=0.005  Score=46.86  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -+++.||||+|||+|...+.+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0029  Score=44.90  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .|+|-|..||||||+++.|...
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.13  E-value=0.0096  Score=41.29  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      +=|+|.|..||||||+.+.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56899999999999999988643

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.11  E-value=0.0056  Score=46.62  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -+++++||+|+|||-|.++|..
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            4699999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.06  E-value=0.0062  Score=44.50  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      --|.|.|+.|.|||||+..+.+.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.02  E-value=0.0062  Score=43.35  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      -++|.|+||+|||+|...++.+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            588999999999999998876543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.93  E-value=0.0084  Score=40.34  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDGSF   40 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~~~   40 (217)
                      .-|++.|++|+||||+.-.|..+..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988887654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.013  Score=42.83  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.0

Q ss_pred             CceeEEEEEcCCCCcHHHHHHHHH
Q 027918           13 DCLIKLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        13 ~~~~~I~v~G~~~~GKttli~~l~   36 (217)
                      ...+=|.|-|.+|||||||...|.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            345789999999999999987663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.0017  Score=44.61  Aligned_cols=18  Identities=39%  Similarity=0.601  Sum_probs=15.8

Q ss_pred             EEEcCCCCcHHHHHHHHH
Q 027918           19 LLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        19 ~v~G~~~~GKttli~~l~   36 (217)
                      +|+|+.||||||++..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999874

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.72  E-value=0.0092  Score=44.45  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      +++.|+||+|||.|.+.|...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999999864

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.71  E-value=0.0086  Score=42.42  Aligned_cols=23  Identities=35%  Similarity=0.621  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcC
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      --++|.|+||+|||+|+..+..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35889999999999999988764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.016  Score=43.04  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -.++++|++|+|||.|...|..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.56  E-value=0.0094  Score=45.96  Aligned_cols=21  Identities=33%  Similarity=0.436  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+|.|++||||||++..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            999999999999999998874

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.54  E-value=0.004  Score=45.72  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=15.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      =|.|.|.+||||||+.+.|..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            499999999999999988754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.01  Score=42.07  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488899999999999999975

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.47  E-value=0.014  Score=43.68  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            4689999999999999999999874

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.36  E-value=0.011  Score=41.67  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~~   39 (217)
                      =++|.|++|+|||+|...++.+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999987643

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.28  E-value=0.014  Score=41.44  Aligned_cols=22  Identities=18%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      -++|.|+||+|||+|...++..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.27  E-value=0.013  Score=40.66  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      +++.|++|+||||++..+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999998765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.24  E-value=0.014  Score=43.55  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999975

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.013  Score=40.96  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      |+|=|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999998875

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.21  E-value=0.0099  Score=41.03  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -+++.|++++|||.|+..|+.
T Consensus        55 ~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          55 CLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.014  Score=41.49  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      +++.|++|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999988754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.008  Score=44.23  Aligned_cols=17  Identities=29%  Similarity=0.575  Sum_probs=15.7

Q ss_pred             EEEcCCCCcHHHHHHHH
Q 027918           19 LLIGDSGVGKSCLLLRF   35 (217)
Q Consensus        19 ~v~G~~~~GKttli~~l   35 (217)
                      +++|+.|||||+++..+
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            68899999999999877

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.06  E-value=0.011  Score=44.34  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             eeEEEEEcCCCCcHHHHHHHHHcC
Q 027918           15 LIKLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        15 ~~~I~v~G~~~~GKttli~~l~~~   38 (217)
                      .++|.|=|.-|+||||+++.|...
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.91  E-value=0.017  Score=40.38  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~   38 (217)
                      +.+.|++|+|||-|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.80  E-value=0.017  Score=40.38  Aligned_cols=21  Identities=33%  Similarity=0.545  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -++|.|++|+|||+|...++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999877653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.015  Score=44.99  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      -+++|+|.+|+|||+++..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3699999999999999887764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.017  Score=44.20  Aligned_cols=20  Identities=35%  Similarity=0.544  Sum_probs=16.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 027918           16 IKLLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~   36 (217)
                      ++ +|+|+.|||||+++..+.
T Consensus        27 l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          27 FT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EE-EEECSTTSSHHHHHHHHH
T ss_pred             EE-EEECCCCCCHHHHHHHHH
Confidence            44 578999999999999873

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.57  E-value=0.021  Score=40.36  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      -|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999965

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.57  E-value=0.021  Score=41.24  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|.|.||+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999887764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.44  E-value=0.015  Score=42.55  Aligned_cols=15  Identities=27%  Similarity=0.625  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q 027918           18 LLLIGDSGVGKSCLL   32 (217)
Q Consensus        18 I~v~G~~~~GKttli   32 (217)
                      ++|+|.||+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999763

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.10  E-value=0.02  Score=42.28  Aligned_cols=15  Identities=40%  Similarity=0.789  Sum_probs=13.3

Q ss_pred             EEEEcCCCCcHHHHH
Q 027918           18 LLLIGDSGVGKSCLL   32 (217)
Q Consensus        18 I~v~G~~~~GKttli   32 (217)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.74  E-value=0.031  Score=40.21  Aligned_cols=20  Identities=35%  Similarity=0.509  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 027918           18 LLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~   37 (217)
                      ++|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            66999999999999887754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.036  Score=40.48  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++|+|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999888763

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.41  E-value=0.039  Score=39.90  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      --+.+.|++++|||+|++.+..
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999999876

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.13  E-value=0.063  Score=39.71  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      .++++|++|+|||.+.+.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999998764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.08  E-value=0.046  Score=41.32  Aligned_cols=19  Identities=21%  Similarity=0.476  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLLRF   35 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l   35 (217)
                      -.+|.|+||+|||+++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            4788999999999987553

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.64  E-value=1.1  Score=30.69  Aligned_cols=64  Identities=11%  Similarity=0.031  Sum_probs=43.8

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCC
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKV-LVGNKADMD  133 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvi-vv~nK~Dl~  133 (217)
                      +.+.++|+++...  ......+..+|.++++...+ ..++..+......+.+.   +.|++ +|+|+.+..
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhcccccc
Confidence            4788899987543  23344566799998888875 55666666666666543   56765 789999853

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.094  Score=37.68  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      =+.|.|++++|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            4789999999999998877653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.13  E-value=1  Score=29.82  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=28.0

Q ss_pred             hcccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           83 AYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        83 ~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ..+.++|++|++-......          ...-++.+...+.++.+.+.-+++|.|=.|
T Consensus        96 ~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd  154 (175)
T d7mdha1          96 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCN  154 (175)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHH
Confidence            4567899888886554321          112233445555666554555667777666

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.91  E-value=0.096  Score=37.22  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      .-|+|.|++|+||+.+.+.+..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999998865

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.71  E-value=0.11  Score=34.99  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCC
Q 027918           18 LLLIGDSGVGKSCLLLRFSDGS   39 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~~~~   39 (217)
                      |+|+|...||||.+...+....
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~   23 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA   23 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCccHHHHHHHHHhcC
Confidence            6899999999999999998543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.64  E-value=0.11  Score=37.58  Aligned_cols=22  Identities=36%  Similarity=0.735  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999999998888754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.14  Score=31.95  Aligned_cols=22  Identities=14%  Similarity=0.179  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHc
Q 027918           16 IKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        16 ~~I~v~G~~~~GKttli~~l~~   37 (217)
                      +-|.+-|..|+||++|.+.|..
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            7899999999999999998864

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.42  Score=30.26  Aligned_cols=42  Identities=10%  Similarity=0.139  Sum_probs=25.1

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 027918           84 YYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADM  132 (217)
Q Consensus        84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pvivv~nK~Dl  132 (217)
                      .+.++|+  +.+|  ..+-|+++..+...+...   +.+|++.+=..|-
T Consensus        70 ~~~~~d~--I~ID--EaQFf~dl~~~~~~~~~~---~~~Viv~GLd~Df  111 (133)
T d1xbta1          70 EALGVAV--IGID--EGQFFPDIVEFCEAMANA---GKTVIVAALDGTF  111 (133)
T ss_dssp             HHHTCSE--EEES--SGGGCTTHHHHHHHHHHT---TCEEEEECCSBCT
T ss_pred             hhcccce--EEee--hhHHHHHHHHHHHHHHhc---CCcEEEEEecccc
Confidence            3455663  3333  344455566666666553   6888888877774

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.13  Score=36.25  Aligned_cols=19  Identities=26%  Similarity=0.378  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027918           18 LLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~   36 (217)
                      ++|.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999873

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.86  E-value=0.13  Score=33.07  Aligned_cols=18  Identities=28%  Similarity=0.492  Sum_probs=14.0

Q ss_pred             EEEcCCCCcHHH-HHHHHH
Q 027918           19 LLIGDSGVGKSC-LLLRFS   36 (217)
Q Consensus        19 ~v~G~~~~GKtt-li~~l~   36 (217)
                      +++|+-.||||| |++++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            468999999999 555553

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.64  E-value=0.14  Score=35.81  Aligned_cols=19  Identities=32%  Similarity=0.476  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 027918           18 LLLIGDSGVGKSCLLLRFS   36 (217)
Q Consensus        18 I~v~G~~~~GKttli~~l~   36 (217)
                      ++|.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999863

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.11  Score=38.10  Aligned_cols=14  Identities=43%  Similarity=0.688  Sum_probs=12.9

Q ss_pred             EEEcCCCCcHHHHH
Q 027918           19 LLIGDSGVGKSCLL   32 (217)
Q Consensus        19 ~v~G~~~~GKttli   32 (217)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999975

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.73  E-value=0.19  Score=31.68  Aligned_cols=21  Identities=24%  Similarity=0.124  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      ..+|.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457899999999998765543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.06  E-value=0.12  Score=38.03  Aligned_cols=15  Identities=40%  Similarity=0.616  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 027918           18 LLLIGDSGVGKSCLL   32 (217)
Q Consensus        18 I~v~G~~~~GKttli   32 (217)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999974

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.74  E-value=0.14  Score=37.69  Aligned_cols=15  Identities=40%  Similarity=0.614  Sum_probs=13.5

Q ss_pred             EEEEcCCCCcHHHHH
Q 027918           18 LLLIGDSGVGKSCLL   32 (217)
Q Consensus        18 I~v~G~~~~GKttli   32 (217)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999997

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.72  E-value=0.25  Score=33.63  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             ceeEEEEEcCCCCcHHHHHHHHHc
Q 027918           14 CLIKLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        14 ~~~~I~v~G~~~~GKttli~~l~~   37 (217)
                      ....+++-|++|+|||+++..+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998876

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.66  E-value=1.3  Score=28.53  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=28.4

Q ss_pred             hhcccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 027918           82 TAYYRGAMGILLVYDVTDES----------SFNNIRNWIRNIEQHASDNVNKVLVGNKAD  131 (217)
Q Consensus        82 ~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~l~~~~~~~~pvivv~nK~D  131 (217)
                      ...++++|++|+.......+          ...-++.+...+.++...+.-++++.|-.|
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvD  134 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPAN  134 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHH
Confidence            34668899888876544321          123344455566665544444555567666

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.42  E-value=0.22  Score=36.05  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            8999999999999998776643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.23  E-value=0.31  Score=34.96  Aligned_cols=21  Identities=24%  Similarity=0.253  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      =+.|.|++++|||+|...++.
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            467899999999999888765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.04  E-value=0.34  Score=34.74  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 027918           17 KLLLIGDSGVGKSCLLLRFSD   37 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~   37 (217)
                      =+.|.|++++|||+|+-.+..
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            578899999999999877764

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=82.67  E-value=0.3  Score=35.16  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 027918           17 KLLLIGDSGVGKSCLLLRFSDG   38 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~~l~~~   38 (217)
                      |+.|+|.+|+|||+|+..+...
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            7899999999999998876544

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.98  E-value=1.3  Score=28.43  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=16.2

Q ss_pred             eeEEEEEcC-CCCcHHHHHHHHHc
Q 027918           15 LIKLLLIGD-SGVGKSCLLLRFSD   37 (217)
Q Consensus        15 ~~~I~v~G~-~~~GKttli~~l~~   37 (217)
                      .+||.|+|. .++|.+.... |..
T Consensus         3 p~KV~IiGA~G~VG~~la~~-l~~   25 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYS-IGN   25 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHH-HHT
T ss_pred             ceEEEEECCCCHHHHHHHHH-HHH
Confidence            589999996 7788776554 444

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.49  E-value=0.5  Score=31.99  Aligned_cols=19  Identities=21%  Similarity=0.413  Sum_probs=16.1

Q ss_pred             EEEEEcCC-CCcHHHHHHHH
Q 027918           17 KLLLIGDS-GVGKSCLLLRF   35 (217)
Q Consensus        17 ~I~v~G~~-~~GKttli~~l   35 (217)
                      |+.|.|-. |+||||+.--|
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            78999995 99999996655

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.84  E-value=6  Score=26.50  Aligned_cols=83  Identities=13%  Similarity=0.007  Sum_probs=47.7

Q ss_pred             EEEEEeeCCCcccccchhhhcccCCcEEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCCCccChH
Q 027918           64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN-KVLVGNKADMDESKRAVPTS  142 (217)
Q Consensus        64 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~p-vivv~nK~Dl~~~~~~~~~~  142 (217)
                      +.+.|+|+|+...  ......+..+|.++++...+ ..+..........+.+.   +.+ +-+|+|+.+-..     ...
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~-----~~~  178 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTLG-----IEM  178 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTTT-----HHH
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc---cccccccccccccccc-----ccc
Confidence            3578899987543  23334556789888888774 44555555554444444   334 447889986321     122


Q ss_pred             HHHHHHHHhCCeEEE
Q 027918          143 KGQALADEYGIKFFE  157 (217)
Q Consensus       143 ~~~~~~~~~~~~~~~  157 (217)
                      ..+.+.+..+.+++.
T Consensus       179 ~~~~i~~~~~~~~~~  193 (232)
T d1hyqa_         179 AKNEIEAILEAKVIG  193 (232)
T ss_dssp             HHHHHHHHTTSCEEE
T ss_pred             hhhhHHhhcCCeEEE
Confidence            234455556665543

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.84  E-value=0.53  Score=33.65  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=23.2

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHHhcCCCCcE-EEEEeCC
Q 027918           90 GILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK-VLVGNKA  130 (217)
Q Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~pv-ivv~nK~  130 (217)
                      .+++|... +.-+..+....+..+...   ++|+ -+|+|+.
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~---gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAI---GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHH---TCCCEEEEEEEE
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhc---CCCceEEEEcCC
Confidence            44555444 355667777777777665   4565 4777986

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.14  E-value=0.57  Score=31.35  Aligned_cols=17  Identities=24%  Similarity=0.553  Sum_probs=13.7

Q ss_pred             EEEEEcCCCCcHHHHHH
Q 027918           17 KLLLIGDSGVGKSCLLL   33 (217)
Q Consensus        17 ~I~v~G~~~~GKttli~   33 (217)
                      +++|.+++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            47899999999997433