Citrus Sinensis ID: 027923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MAKIANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccccEEEEEEEEEEcccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcHHHHHHHHHHHHHHHHHHHccEEEEEccccccEEEEEEccccEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
makianvhgevlFPVFFAFYFTINAIVSDaiwlnlpatgtkcvsEEIQNNVVVLADYVVVsddhshsptisvkvtspygnnlhnrenvtygqfafttheagnYLACfwvdghnpgggdvsvnidwktgiaakdwESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Flexible Loop (DISEMBL)
makianvhgeVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDhshsptisvkvtspygnnlhNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIaakdwesvarKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLkrffqkkkli
Low Complexity Region (SEG)
MAKIANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNvvvladyvvvsddHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Disordered region (IsUnstruct)
***IANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTK***********NSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQ*****
Disordered Region (DISOPRED)
************FPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR*NVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAA**************VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Disordered Region (DISEMBL)
MAKIANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAE********NSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Disordered Region (DISPRO)
MAKIANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKL*
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKxxxxxxxxxxxxxxxxxxxxxLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q6IDL4	217	Transmembrane emp24 domai	yes	no	0.944	0.944	0.710	2e-86
Q9FVU0	212	Transmembrane emp24 domai	no	no	0.917	0.938	0.695	3e-81
Q8RWM6	216	Transmembrane emp24 domai	no	no	0.949	0.953	0.652	1e-74
F4J4Y0	217	Transmembrane emp24 domai	no	no	0.870	0.870	0.549	2e-54
Q9LQY3	214	Transmembrane emp24 domai	no	no	0.912	0.925	0.423	4e-45
Q8GYG1	212	Transmembrane emp24 domai	no	no	0.903	0.924	0.412	6e-42
Q8VY92	214	Transmembrane emp24 domai	no	no	0.852	0.864	0.425	3e-40
O81045	213	Transmembrane emp24 domai	no	no	0.838	0.854	0.414	4e-40
Q9LJV9	225	Transmembrane emp24 domai	no	no	0.866	0.835	0.378	4e-37
Q90515	213	Transmembrane emp24 domai	N/A	no	0.935	0.953	0.349	7e-31

>sp|Q6IDL4|P24D3_ARATH Transmembrane emp24 domain-containing protein p24delta3 OS=Arabidopsis thaliana GN=At1g09580 PE=1 SV=1

 Score =  318 bits (814), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 178/207 (85%), Gaps = 2/207 (0%)

Query: 13  FPVFFAFYFTINAI--VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTI 70
           FP  F   F +  +  V +A+WL++P TGTKCVSEEIQ+NVVVLADY+++S+DH   PTI
Sbjct: 11  FPTAFLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTI 70

Query: 71  SVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIA 130
           SVKVTSPYGNNLHN ENVT+GQFAFTT E+GNYLACFW D  + G  +VS+NIDW+TGIA
Sbjct: 71  SVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIA 130

Query: 131 AKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSL 190
           AKDW S+A+KEK+EGVELE+RKLEGAVEAIHEN+LYL+ +EA+MR +SEKTNSRVAWYS+
Sbjct: 131 AKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSI 190

Query: 191 MSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           MSLGVCI VSG QV +LK++F+KKKLI
Sbjct: 191 MSLGVCIAVSGFQVLYLKQYFEKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVU0|P24D4_ARATH Transmembrane emp24 domain-containing protein p24delta4 OS=Arabidopsis thaliana GN=At1g57620 PE=1 SV=1

 Score =  300 bits (769), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/200 (69%), Positives = 173/200 (86%), Gaps = 1/200 (0%)

Query: 18  AFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSP 77
           A  F+++ I  +A+WL +P TG+KCVSEEIQ+NV+VLADY+V+S++HS  PT+SVKVT+P
Sbjct: 14  ALIFSLSPIC-EAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFPTVSVKVTAP 72

Query: 78  YGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESV 137
           YG  LH+REN T GQFAFTT E+G YLACF  D  + G  D S+NIDWKTGIAAKDW+S+
Sbjct: 73  YGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSI 132

Query: 138 ARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCI 197
           ARKEK+EGVELE +KLEGAVEAIHENL+YL+ +EAEMR VSEKTNSRVAWYS+MSLG+CI
Sbjct: 133 ARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGICI 192

Query: 198 VVSGVQVWHLKRFFQKKKLI 217
           VVSG+Q+ +LK++F+KKKLI
Sbjct: 193 VVSGLQILYLKQYFEKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5 OS=Arabidopsis thaliana GN=At1g21900 PE=1 SV=1

 Score =  279 bits (714), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/213 (65%), Positives = 172/213 (80%), Gaps = 7/213 (3%)

Query: 8   HGEVLFPVFFAFYFTINAIVSDAIWLNLPATG-TKCVSEEIQNNVVVLADYVVVSDDHS- 65
           HG  LF     F+ T+N    +AIWL +P TG TKCVSEEIQ+NVVVLADY VV D+H+ 
Sbjct: 8   HGS-LFLTVVLFFLTVN--YGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVV-DEHNP 63

Query: 66  -HSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNID 124
            ++P +S KVTSPYGNNLH++ENVT+GQFAFTT EAGNYLACFW+D  +     +++ +D
Sbjct: 64  ENTPAVSSKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVD 123

Query: 125 WKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSR 184
           WK GIAAKDW+SVA+KEK+EGVEL+LR+LEG V +I ENL Y+K +EAEMREVSE TNSR
Sbjct: 124 WKMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSR 183

Query: 185 VAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           VAW+S+MSLGVC+VV G Q+ +LKR+F KKKLI
Sbjct: 184 VAWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24beta2 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus. Once in the Golgi, interacts very efficiently with the COPI machinery for retrograde transport back to the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J4Y0|P24D6_ARATH Transmembrane emp24 domain-containing protein p24delta6 OS=Arabidopsis thaliana GN=At3g10780 PE=1 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 137/193 (70%), Gaps = 4/193 (2%)

Query: 29  DAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSH-SPTISVKVTSPYGNNLHNREN 87
           +AIWL +P +G +CV EEIQ NVVV+ DY+ + D  +   PT+ V+VTSPYG  L+   N
Sbjct: 25  EAIWLTVPESGERCVYEEIQANVVVVLDYICIDDAFTQLGPTLDVRVTSPYGKELYKIAN 84

Query: 88  VTYGQFAFTTHEAGNYLACFWV---DGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLE 144
           VT+GQ AFTT E+G +LAC  +     H+     V V++DWK GI AKDW+SVA+KEK+E
Sbjct: 85  VTHGQAAFTTSESGTFLACLAMHHDQSHHSVNSSVIVSLDWKMGIRAKDWDSVAKKEKIE 144

Query: 145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQV 204
           GVELE+R+      AI  N+LYL+ +EA MRE++EKTN+RV    LMSLGV IVVS  QV
Sbjct: 145 GVELEIRRSTEYASAIRANILYLRIREAYMREINEKTNTRVNQLGLMSLGVAIVVSISQV 204

Query: 205 WHLKRFFQKKKLI 217
            +LKR+F KKKLI
Sbjct: 205 LYLKRYFLKKKLI 217

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQY3|P24D9_ARATH Transmembrane emp24 domain-containing protein p24delta9 OS=Arabidopsis thaliana GN=At1g26690 PE=2 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/203 (42%), Positives = 138/203 (67%), Gaps = 5/203 (2%)

Query: 19  FYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSH-SPT---ISVKV 74
            +  I++ VS ++   L +  TKC+SE+I++N + +  Y VV+ + +H SP    IS++V
Sbjct: 13  LFLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISIRV 72

Query: 75  TSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDW 134
           TS YGN  H+ E+V  GQFAFT  E+G+Y+AC+    H P    +S++ DW+TG+ +K W
Sbjct: 73  TSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEV-TLSIDFDWRTGVQSKSW 131

Query: 135 ESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLG 194
            SVA+K ++E +E ++++L   V +IHE + YL+ +E EM+ ++  TNS++AW S +SL 
Sbjct: 132 SSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLF 191

Query: 195 VCIVVSGVQVWHLKRFFQKKKLI 217
           VC+ V+G+Q  HLK FF+KKK+I
Sbjct: 192 VCLGVAGMQFVHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYG1|P24D7_ARATH Transmembrane emp24 domain-containing protein p24delta7 OS=Arabidopsis thaliana GN=At1g14010 PE=2 SV=1

 Score =  170 bits (431), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 125/201 (62%), Gaps = 5/201 (2%)

Query: 21  FTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSH----SPTISVKVTS 76
            +I + V+ +I   L +  TKC+SEEI  N + +  Y +++    H    S  ++V+VTS
Sbjct: 13  LSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTVRVTS 72

Query: 77  PYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWES 136
           P G   H  + V  GQF+F   E G+Y++CF    H P    + ++ DW+TGI  KDW +
Sbjct: 73  PQGTAYHESDGVESGQFSFVAVETGDYISCFSAVDHKPETTLI-IDFDWRTGIHTKDWSN 131

Query: 137 VARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVC 196
           VA+K ++E +E E++KL   V  IH+ + YL+ +E EM  ++  TNS++AW S +SL VC
Sbjct: 132 VAKKSQVETMEFEVKKLFETVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFVSLAVC 191

Query: 197 IVVSGVQVWHLKRFFQKKKLI 217
           + V+G+Q WHLK FFQKKKLI
Sbjct: 192 LSVAGLQFWHLKTFFQKKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10 OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1

 Score =  164 bits (416), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 133/200 (66%), Gaps = 15/200 (7%)

Query: 27  VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSH-------SPTISVKVTSPYG 79
           +S ++  +L +  TKC++E+I++N + +  Y +   D+ H       +  ISVKVTS  G
Sbjct: 21  ISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNI---DNPHEGQALPQTHKISVKVTSNSG 77

Query: 80  NNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNID--WKTGIAAKDWESV 137
           NN H+ E V  GQFAF+  EAG+Y+ACF    H P   +VS++ID  WKTG+ +K W +V
Sbjct: 78  NNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKP---EVSLSIDFEWKTGVQSKSWANV 134

Query: 138 ARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCI 197
           A+K ++E +E E++ L   V +IHE + YL+ +E EM++++  TN+++AW S++S  VCI
Sbjct: 135 AKKSQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCI 194

Query: 198 VVSGVQVWHLKRFFQKKKLI 217
            V+G+Q  HLK FF+KKK+I
Sbjct: 195 GVAGMQFLHLKTFFEKKKVI 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|O81045|P24D8_ARATH Transmembrane emp24 domain-containing protein p24delta8 OS=Arabidopsis thaliana GN=At2g03290 PE=1 SV=1

 Score =  164 bits (415), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 122/188 (64%), Gaps = 6/188 (3%)

Query: 35  LPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSP-----TISVKVTSPYGNNLHNRENVT 89
           L ++ TKC+ EEI  N + +  Y +V+ +  + P      I VKV  P G NLH  + V 
Sbjct: 27  LKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHEADKVE 86

Query: 90  YGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELE 149
            GQF+FT +E G+Y+AC     + P    ++++ DWKTG+ +K+W +VA+K +++ +E +
Sbjct: 87  AGQFSFTAYENGSYVACITAIDYKPETT-LTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQ 145

Query: 150 LRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKR 209
           ++ L   V +IHE + YL+ +E EM+E++  TNS++AW S  SL VC+ V+G+Q WHLK 
Sbjct: 146 VKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKT 205

Query: 210 FFQKKKLI 217
           FF+KKKLI
Sbjct: 206 FFEKKKLI 213

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). On Golgi membranes, acts as primary receptor for ARF1-GDP which is involved in COPI-vesicle formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJV9|P24DB_ARATH Transmembrane emp24 domain-containing protein p24delta11 OS=Arabidopsis thaliana GN=At3g29070 PE=2 SV=1

 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 124/193 (64%), Gaps = 5/193 (2%)

Query: 29  DAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSH----SPTISVKVTSPYGNNLHN 84
           +++ L++ +  TKC+S++I+ N + +  Y +V+ +  H    S  + V V+SP G + H+
Sbjct: 34  ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query: 85  RENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLE 144
            ENV  G+F FT  E G+Y+ CF   G+ P     +V+ +WK+G+ AKDW ++A++ ++ 
Sbjct: 94  AENVESGKFVFTAEETGDYMTCFVAPGYRPTA-KFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query: 145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQV 204
            +E+E+RKL    E IHE +  L  +E EM+E++  TNSR+A  SL+S  V + V+G+Q+
Sbjct: 153 MLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQL 212

Query: 205 WHLKRFFQKKKLI 217
            HLK F ++KKL+
Sbjct: 213 RHLKSFLERKKLL 225

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Arabidopsis thaliana (taxid: 3702)

>sp|Q90515|TMEDA_TAKRU Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 20/223 (8%)

Query: 4   IANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVV---V 60
           +A +   +  PV     F+I+          LP    KC+ EEI  +V+V  +Y +   V
Sbjct: 1   MARLTALLFLPVLIESAFSISFF--------LPVNTRKCLREEIHKDVLVTGEYEISEQV 52

Query: 61  SDDHSHSPTIS----VKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFW--VDGHNP 114
              H+ S  +      K+T    + L+++E+ T G+FAFTT +   +  CF     G  P
Sbjct: 53  VTVHTSSTVVGDGSIFKITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVP 112

Query: 115 GGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEM 174
              D  VN+D K G+ AK++E +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EM
Sbjct: 113 ---DQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEM 169

Query: 175 REVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           R+ +E TN+RV ++S+ S+   I ++  QV++L+RFF+ KKLI
Sbjct: 170 RDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.

Takifugu rubripes (taxid: 31033)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
225448026	216	PREDICTED: transmembrane emp24 domain-co	0.880	0.884	0.848	5e-94
298204564	192	unnamed protein product [Vitis vinifera]	0.880	0.994	0.848	5e-94
147856607	207	hypothetical protein VITISV_039788 [Viti	0.880	0.922	0.843	2e-93
388507856	214	unknown [Lotus japonicus]	0.953	0.967	0.755	4e-89
255581231	217	Transmembrane emp24 domain-containing pr	0.981	0.981	0.765	2e-87
449444687	215	PREDICTED: transmembrane emp24 domain-co	0.944	0.953	0.721	6e-86
297843756	211	emp24/gp25L/p24 family protein [Arabidop	0.940	0.966	0.728	1e-85
224054264	192	predicted protein [Populus trichocarpa]	0.884	1.0	0.838	2e-85
356512614	211	PREDICTED: transmembrane emp24 domain-co	0.930	0.957	0.733	8e-85
15217563	217	emp24/gp25L/p24 family/GOLD domain-conta	0.944	0.944	0.710	1e-84

>gi|225448026|ref|XP_002272994.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like [Vitis vinifera]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/192 (84%), Positives = 183/192 (95%), Gaps = 1/192 (0%)

Query: 27  VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHS-PTISVKVTSPYGNNLHNR 85
           +S AIWL++P++GTKCVSEEIQNNVVVLADY+V+ DDH+HS PTIS+KVTSPYGNNLH++
Sbjct: 25  MSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLHHK 84

Query: 86  ENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEG 145
           ENVT+GQFAFTT EAGNYLACFWVDGHN GGGDVSVN+DWKTGI AKDWESVARKEK+EG
Sbjct: 85  ENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKIEG 144

Query: 146 VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205
           VELELRKLEGAVEAIHENLLYLK++EAEMR VSEKTN+RVAWYS+MSLGVCI VS +Q+W
Sbjct: 145 VELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQLW 204

Query: 206 HLKRFFQKKKLI 217
           HLKRFFQKKKLI
Sbjct: 205 HLKRFFQKKKLI 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204564|emb|CBI23839.3| unnamed protein product [Vitis vinifera]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 163/192 (84%), Positives = 183/192 (95%), Gaps = 1/192 (0%)

Query: 27  VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHS-PTISVKVTSPYGNNLHNR 85
           +S AIWL++P++GTKCVSEEIQNNVVVLADY+V+ DDH+HS PTIS+KVTSPYGNNLH++
Sbjct: 1   MSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLHHK 60

Query: 86  ENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEG 145
           ENVT+GQFAFTT EAGNYLACFWVDGHN GGGDVSVN+DWKTGI AKDWESVARKEK+EG
Sbjct: 61  ENVTHGQFAFTTSEAGNYLACFWVDGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKIEG 120

Query: 146 VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205
           VELELRKLEGAVEAIHENLLYLK++EAEMR VSEKTN+RVAWYS+MSLGVCI VS +Q+W
Sbjct: 121 VELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQLW 180

Query: 206 HLKRFFQKKKLI 217
           HLKRFFQKKKLI
Sbjct: 181 HLKRFFQKKKLI 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856607|emb|CAN82472.1| hypothetical protein VITISV_039788 [Vitis vinifera]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 162/192 (84%), Positives = 183/192 (95%), Gaps = 1/192 (0%)

Query: 27  VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHS-PTISVKVTSPYGNNLHNR 85
           +S AIWL++P++GTKCVSEEIQNNVVVLADY+V+ DDH+HS PTIS+KVTSPYGNNLH++
Sbjct: 16  MSQAIWLSIPSSGTKCVSEEIQNNVVVLADYLVIPDDHTHSSPTISIKVTSPYGNNLHHK 75

Query: 86  ENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEG 145
           ENVT+GQFAFTT EAGNYLACFWV+GHN GGGDVSVN+DWKTGI AKDWESVARKEK+EG
Sbjct: 76  ENVTHGQFAFTTSEAGNYLACFWVNGHNQGGGDVSVNLDWKTGIGAKDWESVARKEKIEG 135

Query: 146 VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205
           VELELRKLEGAVEAIHENLLYLK++EAEMR VSEKTN+RVAWYS+MSLGVCI VS +Q+W
Sbjct: 136 VELELRKLEGAVEAIHENLLYLKSREAEMRMVSEKTNARVAWYSIMSLGVCIAVSALQLW 195

Query: 206 HLKRFFQKKKLI 217
           HLKRFFQKKKLI
Sbjct: 196 HLKRFFQKKKLI 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507856|gb|AFK41994.1| unknown [Lotus japonicus]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 158/209 (75%), Positives = 186/209 (88%), Gaps = 2/209 (0%)

Query: 11  VLFPVFFAF-YFTINAIVSD-AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSP 68
           +L  +F +F +F+ N + S  AIWL LPATGTKCVSEEIQ+NVVVLADYV+VSDDHSH+P
Sbjct: 6   MLTLLFLSFCFFSTNLVPSALAIWLTLPATGTKCVSEEIQSNVVVLADYVLVSDDHSHNP 65

Query: 69  TISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTG 128
           TI VKVTSPYGNNLH++EN T+G FAFTT E GNYLACFW+DG   GGG+V+VN+DWK G
Sbjct: 66  TIGVKVTSPYGNNLHHKENTTHGSFAFTTQETGNYLACFWMDGQKQGGGEVNVNLDWKIG 125

Query: 129 IAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWY 188
           +AAKDW+SVA+KEK+EGVELELRKLEGAVEAIHENLLYLK +EAEMR VSEKTN+RVAW+
Sbjct: 126 VAAKDWDSVAKKEKIEGVELELRKLEGAVEAIHENLLYLKGREAEMRIVSEKTNARVAWF 185

Query: 189 SLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           S+MSLGVCI VS +Q+W+LKRFFQKKKL+
Sbjct: 186 SIMSLGVCIGVSALQLWYLKRFFQKKKLL 214

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581231|ref|XP_002531428.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis] gi|223528978|gb|EEF30970.1| Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 163/213 (76%), Positives = 188/213 (88%)

Query: 5   ANVHGEVLFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDH 64
           AN+  EV FP+    +      VS+ IWLNLPATGTKCVSEE+ +NVVVLADYVVV++DH
Sbjct: 5   ANLRREVAFPLLLTLWLWRYIQVSEGIWLNLPATGTKCVSEELHSNVVVLADYVVVANDH 64

Query: 65  SHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNID 124
           S  PTIS+KVTSPYGNNLH+RENVT+GQFAFTTHEAGNYLACFW+D H  G  D+SVN+D
Sbjct: 65  SLVPTISIKVTSPYGNNLHHRENVTHGQFAFTTHEAGNYLACFWMDSHPKGSRDISVNLD 124

Query: 125 WKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSR 184
           WKTGIAAKDWESVARKEK+EGVELELRKLEGAVEAIHENLLYLK++EAE+R +SE TN+R
Sbjct: 125 WKTGIAAKDWESVARKEKIEGVELELRKLEGAVEAIHENLLYLKSREAELRTMSETTNAR 184

Query: 185 VAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           VAW+S+MSLGVCI+VS +Q+WHLKRFFQKKKLI
Sbjct: 185 VAWFSIMSLGVCILVSALQLWHLKRFFQKKKLI 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444687|ref|XP_004140105.1| PREDICTED: transmembrane emp24 domain-containing protein p24delta3-like [Cucumis sativus]

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 148/205 (72%), Positives = 181/205 (88%)

Query: 13  FPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISV 72
           F +   F  T     + AIWLNLP++GTKC+SEEIQ+NVVVLADYVV+S++++HSPTISV
Sbjct: 11  FLLILTFLVTDLVRPTHAIWLNLPSSGTKCISEEIQSNVVVLADYVVISENYTHSPTISV 70

Query: 73  KVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAK 132
           KVTSPYGNNLH +EN T GQFAFTT EAGN+LACFWVDGH+ GGG+VS+N+DW+TGI+AK
Sbjct: 71  KVTSPYGNNLHQKENQTSGQFAFTTAEAGNHLACFWVDGHHQGGGEVSLNVDWRTGISAK 130

Query: 133 DWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMS 192
           DWESVA+KEK+EGV+LEL KLEGAV+AIHENL+YLK +EA+MR VSEKTN+RVAW+S+MS
Sbjct: 131 DWESVAKKEKIEGVQLELMKLEGAVKAIHENLMYLKNREADMRIVSEKTNARVAWFSIMS 190

Query: 193 LGVCIVVSGVQVWHLKRFFQKKKLI 217
           LG+CI  S +Q+W+LKRFF KKKLI
Sbjct: 191 LGICIFASALQLWYLKRFFHKKKLI 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843756|ref|XP_002889759.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata] gi|297335601|gb|EFH66018.1| emp24/gp25L/p24 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  321 bits (823), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 150/206 (72%), Positives = 179/206 (86%), Gaps = 2/206 (0%)

Query: 12  LFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTIS 71
           +FP  F   F +   V +A+WL++P TGTKCVSEEIQ+NVVVLADY+++S+DH   PTIS
Sbjct: 8   VFPTAFLLLFLVP--VGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTIS 65

Query: 72  VKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAA 131
           VKVTSPYGNNLHN ENVT+GQFAFTT E+GNYLACFW D  + G  +VS+NIDWKTGIAA
Sbjct: 66  VKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADAKSHGNKNVSINIDWKTGIAA 125

Query: 132 KDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLM 191
           KDW SVA+KEK+EGVELE+RKLEGAVEAIHENLLYL+ +EA+MR +SEKTNSRVAWYS+M
Sbjct: 126 KDWASVAKKEKIEGVELEIRKLEGAVEAIHENLLYLRNREADMRTMSEKTNSRVAWYSIM 185

Query: 192 SLGVCIVVSGVQVWHLKRFFQKKKLI 217
           SLGVCI VSG+QV +LK++F+KKKLI
Sbjct: 186 SLGVCIAVSGLQVLYLKQYFEKKKLI 211

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054264|ref|XP_002298173.1| predicted protein [Populus trichocarpa] gi|222845431|gb|EEE82978.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 161/192 (83%), Positives = 180/192 (93%)

Query: 26  IVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR 85
           +VS+A+WLNLPA+GTKCVSEEI NNVVVLADYVVVSD+HSH P+ISVKVTSPYGNNLH++
Sbjct: 1   MVSEAVWLNLPASGTKCVSEEIHNNVVVLADYVVVSDNHSHIPSISVKVTSPYGNNLHHK 60

Query: 86  ENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEG 145
           ENVT+GQFAFTTHEAGNYLACFWVDGH  G GDVSVNIDWKTGIAAKDW+SVARKEK+EG
Sbjct: 61  ENVTHGQFAFTTHEAGNYLACFWVDGHIQGSGDVSVNIDWKTGIAAKDWDSVARKEKIEG 120

Query: 146 VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205
           VELELRKLEGAVEAIHENLLYLK++E E+R VSE TN+RVA + +MSLGVCI VS +QVW
Sbjct: 121 VELELRKLEGAVEAIHENLLYLKSREEELRSVSEVTNTRVALFGIMSLGVCIAVSALQVW 180

Query: 206 HLKRFFQKKKLI 217
           HLKR+FQKKKLI
Sbjct: 181 HLKRYFQKKKLI 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512614|ref|XP_003525013.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like isoform 1 [Glycine max] gi|356512616|ref|XP_003525014.1| PREDICTED: transmembrane emp24 domain-containing protein 10-like isoform 2 [Glycine max]

 Score =  318 bits (816), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 149/203 (73%), Positives = 176/203 (86%), Gaps = 1/203 (0%)

Query: 16  FFAFYFTINAIVSD-AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKV 74
              F+F+     S  AIWL+LP TGTKCVSEEIQ+N+VVLADYVV+  DH+H+PTI+VKV
Sbjct: 9   LLLFFFSTKLFPSALAIWLSLPTTGTKCVSEEIQHNIVVLADYVVIPSDHTHNPTIAVKV 68

Query: 75  TSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDW 134
           TSPYGNNLH++EN T+G  AFTT EAGNYLACFWVD H+ G  +V+VN+DWK GIAAKDW
Sbjct: 69  TSPYGNNLHHKENTTHGNIAFTTQEAGNYLACFWVDSHSQGVVEVNVNLDWKIGIAAKDW 128

Query: 135 ESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLG 194
           +SVARKEK+EGVELELRKLEGAVEAIHENLLYLK +EA+MR VSEKTN RVAW+S+MSL 
Sbjct: 129 DSVARKEKIEGVELELRKLEGAVEAIHENLLYLKGREADMRTVSEKTNGRVAWFSIMSLA 188

Query: 195 VCIVVSGVQVWHLKRFFQKKKLI 217
           +CI VSG+Q+W+LKR+FQKKKLI
Sbjct: 189 MCIAVSGLQLWYLKRYFQKKKLI 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217563|ref|NP_172429.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75290507|sp|Q6IDL4.1|P24D3_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24delta3; AltName: Full=p24 family protein delta1a; Short=p24delta1a; AltName: Full=p24 family protein delta3; Short=p24delta3; Flags: Precursor gi|38566614|gb|AAR24197.1| At1g09580 [Arabidopsis thaliana] gi|332190344|gb|AEE28465.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 178/207 (85%), Gaps = 2/207 (0%)

Query: 13  FPVFFAFYFTINAI--VSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTI 70
           FP  F   F +  +  V +A+WL++P TGTKCVSEEIQ+NVVVLADY+++S+DH   PTI
Sbjct: 11  FPTAFLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTI 70

Query: 71  SVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIA 130
           SVKVTSPYGNNLHN ENVT+GQFAFTT E+GNYLACFW D  + G  +VS+NIDW+TGIA
Sbjct: 71  SVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIA 130

Query: 131 AKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSL 190
           AKDW S+A+KEK+EGVELE+RKLEGAVEAIHEN+LYL+ +EA+MR +SEKTNSRVAWYS+
Sbjct: 131 AKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSI 190

Query: 191 MSLGVCIVVSGVQVWHLKRFFQKKKLI 217
           MSLGVCI VSG QV +LK++F+KKKLI
Sbjct: 191 MSLGVCIAVSGFQVLYLKQYFEKKKLI 217

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2012335	217	AT1G09580 [Arabidopsis thalian	0.944	0.944	0.666	2.8e-73
TAIR|locus:2206520	212	AT1G57620 [Arabidopsis thalian	0.917	0.938	0.655	1.3e-68
TAIR|locus:2201098	216	p24delta5 "p24 subfamily delta	0.953	0.958	0.603	3.2e-65
TAIR|locus:2200630	214	AT1G26690 [Arabidopsis thalian	0.907	0.920	0.410	2e-40
TAIR|locus:2007196	214	AT1G69460 [Arabidopsis thalian	0.866	0.878	0.421	8.9e-38
TAIR|locus:2014864	212	AT1G14010 [Arabidopsis thalian	0.815	0.834	0.428	1.1e-37
TAIR|locus:2056976	213	AT2G03290 [Arabidopsis thalian	0.838	0.854	0.404	3.5e-36
TAIR|locus:2092788	225	AT3G29070 [Arabidopsis thalian	0.866	0.835	0.367	1.1e-32
ZFIN|ZDB-GENE-030131-4915	209	tmed10 "transmembrane emp24-li	0.875	0.909	0.353	6.4e-28
UNIPROTKB|F1NA76	219	TMED10 "Uncharacterized protei	0.852	0.844	0.380	1e-27

TAIR|locus:2012335 AT1G09580 [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 138/207 (66%), Positives = 165/207 (79%)

Query:    13 FPVFFAFYFTINAI--VSDAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHSPTI 70
             FP  F   F +  +  V +A+WL++P TGTKCVSEEIQ+N             H   PTI
Sbjct:    11 FPTAFLLLFLVPVMIPVGEAVWLDVPPTGTKCVSEEIQSNVVVLADYLIISEDHEVMPTI 70

Query:    71 SVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIA 130
             SVKVTSPYGNNLHN ENVT+GQFAFTT E+GNYLACFW D  + G  +VS+NIDW+TGIA
Sbjct:    71 SVKVTSPYGNNLHNMENVTHGQFAFTTQESGNYLACFWADEKSHGNKNVSINIDWRTGIA 130

Query:   131 AKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSL 190
             AKDW S+A+KEK+EGVELE+RKLEGAVEAIHEN+LYL+ +EA+MR +SEKTNSRVAWYS+
Sbjct:   131 AKDWASIAKKEKIEGVELEIRKLEGAVEAIHENILYLRNREADMRTMSEKTNSRVAWYSI 190

Query:   191 MSLGVCIVVSGVQVWHLKRFFQKKKLI 217
             MSLGVCI VSG QV +LK++F+KKKLI
Sbjct:   191 MSLGVCIAVSGFQVLYLKQYFEKKKLI 217

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2206520 AT1G57620 [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 131/200 (65%), Positives = 160/200 (80%)

Query:    18 AFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHSPTISVKVTSP 77
             A  F+++ I  +A+WL +P TG+KCVSEEIQ+N             HS  PT+SVKVT+P
Sbjct:    14 ALIFSLSPIC-EAVWLTVPHTGSKCVSEEIQSNVIVLADYLVISEEHSIFPTVSVKVTAP 72

Query:    78 YGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESV 137
             YG  LH+REN T GQFAFTT E+G YLACF  D  + G  D S+NIDWKTGIAAKDW+S+
Sbjct:    73 YGTVLHHRENTTNGQFAFTTQESGTYLACFEADAKSHGNKDFSINIDWKTGIAAKDWDSI 132

Query:   138 ARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCI 197
             ARKEK+EGVELE +KLEGAVEAIHENL+YL+ +EAEMR VSEKTNSRVAWYS+MSLG+CI
Sbjct:   133 ARKEKIEGVELEFKKLEGAVEAIHENLIYLRNREAEMRIVSEKTNSRVAWYSIMSLGICI 192

Query:   198 VVSGVQVWHLKRFFQKKKLI 217
             VVSG+Q+ +LK++F+KKKLI
Sbjct:   193 VVSGLQILYLKQYFEKKKLI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2201098 p24delta5 "p24 subfamily delta 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 128/212 (60%), Positives = 160/212 (75%)

Query:     8 HGEVLFPVFFAFYFTINAIVSDAIWLNLPATG-TKCVSEEIQNNXXXXXXXXXXXXXH-S 65
             HG  LF     F+ T+N    +AIWL +P TG TKCVSEEIQ+N             +  
Sbjct:     8 HGS-LFLTVVLFFLTVN--YGEAIWLTIPTTGGTKCVSEEIQSNVVVLADYYVVDEHNPE 64

Query:    66 HSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDW 125
             ++P +S KVTSPYGNNLH++ENVT+GQFAFTT EAGNYLACFW+D  +     +++ +DW
Sbjct:    65 NTPAVSSKVTSPYGNNLHHQENVTHGQFAFTTQEAGNYLACFWIDSSHHLANPITLGVDW 124

Query:   126 KTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRV 185
             K GIAAKDW+SVA+KEK+EGVEL+LR+LEG V +I ENL Y+K +EAEMREVSE TNSRV
Sbjct:   125 KMGIAAKDWDSVAKKEKIEGVELQLRRLEGLVLSIRENLNYIKDREAEMREVSETTNSRV 184

Query:   186 AWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI 217
             AW+S+MSLGVC+VV G Q+ +LKR+F KKKLI
Sbjct:   185 AWFSIMSLGVCVVVVGSQILYLKRYFHKKKLI 216

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2200630 AT1G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 83/202 (41%), Positives = 131/202 (64%)

Query:    20 YFTINAIVSDAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSH-SPT---ISVKVT 75
             +  I++ VS ++   L +  TKC+SE+I++N              +H SP    IS++VT
Sbjct:    14 FLAISSQVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAHPSPQSHKISIRVT 73

Query:    76 SPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWE 135
             S YGN  H+ E+V  GQFAFT  E+G+Y+AC+    H P    +S++ DW+TG+ +K W 
Sbjct:    74 SSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEV-TLSIDFDWRTGVQSKSWS 132

Query:   136 SVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGV 195
             SVA+K ++E +E ++++L   V +IHE + YL+ +E EM+ ++  TNS++AW S +SL V
Sbjct:   133 SVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNSKMAWLSFLSLFV 192

Query:   196 CIVVSGVQVWHLKRFFQKKKLI 217
             C+ V+G+Q  HLK FF+KKK+I
Sbjct:   193 CLGVAGMQFVHLKTFFEKKKVI 214

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2007196 AT1G69460 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 83/197 (42%), Positives = 127/197 (64%)

Query:    27 VSDAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHS-PT---ISVKVTSPYGNNL 82
             +S ++  +L +  TKC++E+I++N                + P    ISVKVTS  GNN 
Sbjct:    21 ISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNIDNPHEGQALPQTHKISVKVTSNSGNNY 80

Query:    83 HNRENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNID--WKTGIAAKDWESVARK 140
             H+ E V  GQFAF+  EAG+Y+ACF    H P   +VS++ID  WKTG+ +K W +VA+K
Sbjct:    81 HHAEQVDSGQFAFSAVEAGDYMACFTAVDHKP---EVSLSIDFEWKTGVQSKSWANVAKK 137

Query:   141 EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVS 200
              ++E +E E++ L   V +IHE + YL+ +E EM++++  TN+++AW S++S  VCI V+
Sbjct:   138 SQVEVMEFEVKSLLDTVNSIHEEMYYLRDREEEMQDLNRSTNTKMAWLSVLSFFVCIGVA 197

Query:   201 GVQVWHLKRFFQKKKLI 217
             G+Q  HLK FF+KKK+I
Sbjct:   198 GMQFLHLKTFFEKKKVI 214

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2014864 AT1G14010 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 78/182 (42%), Positives = 110/182 (60%)

Query:    40 TKCVSEEIQNNXXXXXXXXXXXXXHSH----SPTISVKVTSPYGNNLHNRENVTYGQFAF 95
             TKC+SEEI  N               H    S  ++V+VTSP G   H  + V  GQF+F
Sbjct:    32 TKCISEEIHANAMTIGKYSIINPHEDHPLPSSHKVTVRVTSPQGTAYHESDGVESGQFSF 91

Query:    96 TTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEG 155
                E G+Y++CF    H P    + ++ DW+TGI  KDW +VA+K ++E +E E++KL  
Sbjct:    92 VAVETGDYISCFSAVDHKPET-TLIIDFDWRTGIHTKDWSNVAKKSQVETMEFEVKKLFE 150

Query:   156 AVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKK 215
              V  IH+ + YL+ +E EM  ++  TNS++AW S +SL VC+ V+G+Q WHLK FFQKKK
Sbjct:   151 TVNGIHDEMFYLRDREEEMHNLNIATNSKMAWLSFVSLAVCLSVAGLQFWHLKTFFQKKK 210

Query:   216 LI 217
             LI
Sbjct:   211 LI 212

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2056976 AT2G03290 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 76/188 (40%), Positives = 115/188 (61%)

Query:    35 LPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHSPT-----ISVKVTSPYGNNLHNRENVT 89
             L ++ TKC+ EEI  N               + P      I VKV  P G NLH  + V 
Sbjct:    27 LKSSKTKCIGEEIHENAMSIGKYFIVNPNEDNHPLPDSHKIIVKVMPPQGKNLHEADKVE 86

Query:    90 YGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELE 149
              GQF+FT +E G+Y+AC     + P    ++++ DWKTG+ +K+W +VA+K +++ +E +
Sbjct:    87 AGQFSFTAYENGSYVACITAIDYKPET-TLTIDFDWKTGVHSKEWTNVAKKSQVDMMEYQ 145

Query:   150 LRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKR 209
             ++ L   V +IHE + YL+ +E EM+E++  TNS++AW S  SL VC+ V+G+Q WHLK 
Sbjct:   146 VKTLMDTVISIHEEMYYLREREEEMQELNRSTNSKMAWLSFGSLVVCLSVAGLQFWHLKT 205

Query:   210 FFQKKKLI 217
             FF+KKKLI
Sbjct:   206 FFEKKKLI 213

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2092788 AT3G29070 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 71/193 (36%), Positives = 117/193 (60%)

Query:    29 DAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSH----SPTISVKVTSPYGNNLHN 84
             +++ L++ +  TKC+S++I+ N               H    S  + V V+SP G + H+
Sbjct:    34 ESMRLDMESGNTKCISDDIKTNYMTVGTYSIVNPNEGHHLPPSHKLFVTVSSPKGKSHHH 93

Query:    85 RENVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLE 144
              ENV  G+F FT  E G+Y+ CF   G+ P     +V+ +WK+G+ AKDW ++A++ ++ 
Sbjct:    94 AENVESGKFVFTAEETGDYMTCFVAPGYRPTA-KFAVDFEWKSGVEAKDWTTIAKRGQIT 152

Query:   145 GVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQV 204
              +E+E+RKL    E IHE +  L  +E EM+E++  TNSR+A  SL+S  V + V+G+Q+
Sbjct:   153 MLEVEVRKLLDVTETIHEEMFQLIEREREMQELNRSTNSRMAALSLLSFVVTMSVAGLQL 212

Query:   205 WHLKRFFQKKKLI 217
              HLK F ++KKL+
Sbjct:   213 RHLKSFLERKKLL 225

GO:0005739 "mitochondrion" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-4915 tmed10 "transmembrane emp24-like trafficking protein 10 (yeast)" [Danio rerio (taxid:7955)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 71/201 (35%), Positives = 121/201 (60%)

Query:    21 FTINAIVSDAIWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHSPTISVKVTSPYGN 80
             F I +++S + +L  P    KC+ EEI  +             ++ +   ++K+T   G+
Sbjct:    15 FVIQSVLSISFYL--PVRSRKCLREEIHKDVLVTGEYEISEQPNTKT---NLKITDSSGH 69

Query:    81 NLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNP-GGG---DVSVNIDWKTGIAAKDWES 136
              L+ +E+ T G+FAFTT +   +  CF  +  +P G G   D  +N+D K G+ AK++E 
Sbjct:    70 ILYVKEDATKGKFAFTTEDYDMFEVCF--ESKSPMGTGRVPDQQINLDMKHGVEAKNYEE 127

Query:   137 VARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVC 196
             +A+ EKL+ +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   
Sbjct:   128 IAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMCCL 187

Query:   197 IVVSGVQVWHLKRFFQKKKLI 217
             I ++  QV++L+RFF+ KKLI
Sbjct:   188 IGLATWQVFYLRRFFKAKKLI 208

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NA76 TMED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 73/192 (38%), Positives = 114/192 (59%)

Query:    31 IWLNLPATGTKCVSEEIQNNXXXXXXXXXXXXXHSHS-PTISVKVTSPYGNNLHNRENVT 89
             I   LP    KC+ EEI  +              S S P+ ++K+T   G+ L+ +E+ T
Sbjct:    29 ISFQLPGKARKCLREEIHRDTLVTGEYEIGAPPGSSSGPSANLKITDSAGHILYAKEDAT 88

Query:    90 YGQFAFTTHEAGNYLACFWVDGHNP-GGG---DVSVNIDWKTGIAAKDWESVARKEKLEG 145
              G+FAFTT +   + ACF  +   P G G   D  V +D K G+ AK++E +A+ EKL+ 
Sbjct:    89 KGKFAFTTEDYDMFEACF--ESKLPVGTGRMPDQLVILDMKHGVEAKNYEEIAKVEKLKP 146

Query:   146 VELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVW 205
             +E+ELR+LE   E+I  +  Y+K +E EMR+ +E TN+RV ++S+ S+   I ++  QV+
Sbjct:   147 LEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMCCLIGLATWQVF 206

Query:   206 HLKRFFQKKKLI 217
             +L+RFF+ KKLI
Sbjct:   207 YLRRFFKAKKLI 218

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0030667 "secretory granule membrane" evidence=IEA

GO:0034205 "beta-amyloid formation" evidence=IEA

GO:0035964 "COPI-coated vesicle budding" evidence=IEA

GO:0045055 "regulated secretory pathway" evidence=IEA

GO:0070765 "gamma-secretase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28735	TMEDA_RABIT	No assigned EC number	0.3664	0.8525	0.8447	yes	no
P49755	TMEDA_HUMAN	No assigned EC number	0.3782	0.8433	0.8356	yes	no
Q5E971	TMEDA_BOVIN	No assigned EC number	0.3782	0.8433	0.8356	yes	no
Q5RE32	TMEDA_PONAB	No assigned EC number	0.3730	0.8433	0.8356	yes	no
Q63584	TMEDA_RAT	No assigned EC number	0.3664	0.8525	0.8447	yes	no
Q295B2	TMEDE_DROPS	No assigned EC number	0.3147	0.8663	0.8703	yes	no
Q6IDL4	P24D3_ARATH	No assigned EC number	0.7101	0.9447	0.9447	yes	no
Q9D1D4	TMEDA_MOUSE	No assigned EC number	0.3664	0.8525	0.8447	yes	no
Q8SXY6	TMEDA_DROME	No assigned EC number	0.3144	0.8479	0.8932	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026552001 SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	1e-55
PRK09602	396	PRK09602, PRK09602, translation-associated GTPase;	0.003

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  174 bits (444), Expect = 1e-55
 Identities = 69/186 (37%), Positives = 100/186 (53%), Gaps = 11/186 (5%)

Query: 30  AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNN---LHNRE 86
           A+   LPA   +C  EE+    +V   Y V+S  +     I   +T P GN        +
Sbjct: 1   ALTFELPAGEKECFYEEVPKGTLVTGSYQVISGGN---LDIDFTITDPDGNGNVIYSKED 57

Query: 87  NVTYGQFAFTTHEAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGV 146
             + G+F+FT  E+G Y  CF            +V+ D K G  AKD   +A+KEKL+ +
Sbjct: 58  RKSGGKFSFTATESGEYKFCFSNSFST--FSSKTVSFDIKVGEEAKD---IAKKEKLDPL 112

Query: 147 ELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWH 206
           E EL+KLE  +  I     YL+ +EA  RE +E TNSRV W+S++ + V I VS +QV++
Sbjct: 113 EEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYY 172

Query: 207 LKRFFQ 212
           LKRFF+
Sbjct: 173 LKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 125 WKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTN 182
           W  GI  K+WE  +RK + E  ++E        EA+ E L  L   E  ++E   +  
Sbjct: 144 WIYGILEKNWEKFSRKAQAEKFDIE--------EALAEQLSGLGINEEHVKEALRELG 193

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	94.61
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	92.66
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	92.43
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	89.6
PF13860	81	FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.	89.51
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	85.52
PF13473	104	Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D	84.56
PRK05842	295	flgD flagellar basal body rod modification protein	83.33
PRK06655	225	flgD flagellar basal body rod modification protein	81.42
PRK14081	667	triple tyrosine motif-containing protein; Provisio	80.88
COG2372	127	CopC Uncharacterized protein, homolog of Cu resist	80.79

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-48  Score=293.18  Aligned_cols=184  Identities=25%  Similarity=0.423  Sum_probs=171.9

Q ss_pred             ceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEE
Q 027923           28 SDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACF  107 (217)
Q Consensus        28 ~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf  107 (217)
                      +.++.+.+++.+++||+|++..|+.+.++|++.+++   .+++++.|++|+|+.++..++.+.|+|+|+++.+|.|++||
T Consensus        18 ~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg---~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fCF   94 (201)
T KOG1692|consen   18 AAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGG---FLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFCF   94 (201)
T ss_pred             hhheeEEEccchhhhHhhhhccCCEEEEEEEEecCC---ccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEEe
Confidence            889999999999999999999999999999999863   67999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 027923          108 WVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVAW  187 (217)
Q Consensus       108 ~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~~  187 (217)
                      .|  ..++..++.|.|+++.|...+. ++.+++++.+++++.+.+|...|..++.||.|+..|+++||.++|+|++|++|
T Consensus        95 ~N--~~s~mtpk~V~F~ihvg~~~~~-~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~  171 (201)
T KOG1692|consen   95 SN--KMSTMTPKTVMFTIHVGHAPQR-DDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVL  171 (201)
T ss_pred             cC--CCCCCCceEEEEEEEEeecccc-chhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeeh
Confidence            76  4466678999999999877654 34778888899999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923          188 YSLMSLGVCIVVSGVQVWHLKRFFQKKKLI  217 (217)
Q Consensus       188 ~si~~~~vli~~~~~Qv~~lk~fF~~kkli  217 (217)
                      ||++|.++||++++.|+|||||||+.|+++
T Consensus       172 wsife~~vLi~~s~~QVyYLkRfFEvkrvv  201 (201)
T KOG1692|consen  172 WSIFEALVLIAMSVLQVYYLKRFFEVKRVV  201 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhheeeecC
Confidence            999999999999999999999999999864

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-45  Score=282.63  Aligned_cols=205  Identities=54%  Similarity=0.882  Sum_probs=188.2

Q ss_pred             hHHHHHHHHHHHHhhcceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccc
Q 027923           12 LFPVFFAFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYG   91 (217)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~   91 (217)
                      ..+..++++++++...+.++.|+++++.++|+.|++.++..+.|.|.+.+...+..+.+++.|+||.|+.+++.++.++|
T Consensus         4 ~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~g   83 (210)
T KOG1691|consen    4 PCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKG   83 (210)
T ss_pred             HhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccc
Confidence            45556666677778889999999999999999999999999999999997643323689999999999999999999999


Q ss_pred             eEEEEecccceeeEEEEeCC--CCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923           92 QFAFTTHEAGNYLACFWVDG--HNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKT  169 (217)
Q Consensus        92 ~~~f~~~~~G~y~iCf~n~~--~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~  169 (217)
                      +|+|++.++|.|.+||.+..  +.. .....|.|+|..|.+++||+++||+++++++|-++++|++.+.+|.++.-|+|.
T Consensus        84 qFaFta~e~~~y~~Cf~~~~~~~~p-~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr~  162 (210)
T KOG1691|consen   84 QFAFTAEESGMYEACFTADVPGHKP-ETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLRE  162 (210)
T ss_pred             eEEEEeccCCcEEEEEecccCCCCC-CcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999833  222 235899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923          170 KEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI  217 (217)
Q Consensus       170 re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kkli  217 (217)
                      ||+++|+++++||+||.|+|++.++++++++.||++|||+||++||+|
T Consensus       163 REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKLI  210 (210)
T KOG1691|consen  163 REEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKLI  210 (210)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999997

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-45  Score=275.40  Aligned_cols=198  Identities=27%  Similarity=0.399  Sum_probs=174.8

Q ss_pred             HHHHHHHhhcceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCC-------CCCCceEEEEEECCCCC--eeeeeecc
Q 027923           18 AFYFTINAIVSDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDD-------HSHSPTISVKVTSPYGN--NLHNRENV   88 (217)
Q Consensus        18 ~~~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~-------~~~~~~i~~~v~~p~g~--~v~~~~~~   88 (217)
                      .+++++++..++|++|++.+++++||++++|+|+.+.|+|.+.-.+       +.++.++.+.|.+|.++  +|+++...
T Consensus         8 ~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~s   87 (215)
T KOG1690|consen    8 LLLLLLLATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYS   87 (215)
T ss_pred             HHHHHHHHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCC
Confidence            3445667778999999999999999999999999999999986432       12356889999999888  99999999


Q ss_pred             ccceEEEEecccceeeEEEEeCCCC-CCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 027923           89 TYGQFAFTTHEAGNYLACFWVDGHN-PGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYL  167 (217)
Q Consensus        89 ~~~~~~f~~~~~G~y~iCf~n~~~~-~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~  167 (217)
                      ++|.|+|++..+|+|+||+.+..+. ......+|.+++++|+++.++.  ..+++.+.++.++..|.+++.+|+.||+++
T Consensus        88 s~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~  165 (215)
T KOG1690|consen   88 SEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKEQNLQ  165 (215)
T ss_pred             CCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999854442 2345789999999999887754  345667889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhccCC
Q 027923          168 KTKEAEMREVSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKKLI  217 (217)
Q Consensus       168 ~~re~~~r~~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kkli  217 (217)
                      |.||+++|++.||+|+|++||+++|+++++++|+||+.+||+||.++|++
T Consensus       166 R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqKlv  215 (215)
T KOG1690|consen  166 REREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQKLV  215 (215)
T ss_pred             HHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999986

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-42  Score=262.59  Aligned_cols=191  Identities=23%  Similarity=0.406  Sum_probs=168.6

Q ss_pred             HHHHHhhcceeEEEEEcCCCcceEeeeccCCcE-EEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEec
Q 027923           20 YFTINAIVSDAIWLNLPATGTKCVSEEIQNNVV-VLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTH   98 (217)
Q Consensus        20 ~~~~~~~~~~~l~~~l~~~~~~Cf~~~v~~~~~-i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~   98 (217)
                      +++.++..+..++|+||++.++|||+++++++. +.++|+|..||   +.+|++.|++|+|++|++.+++..+.|.|++.
T Consensus        13 lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG---~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae   89 (209)
T KOG1693|consen   13 LLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG---HFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAE   89 (209)
T ss_pred             HHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC---ceeeEEEEECCCCCEEeeccccccccEEEEEe
Confidence            344455558899999999999999999999765 99999999874   78999999999999999999999999999999


Q ss_pred             ccceeeEEEEeCCCCCCCCeEEEEEEEeeccccccchHH-hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923           99 EAGNYLACFWVDGHNPGGGDVSVNIDWKTGIAAKDWESV-ARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREV  177 (217)
Q Consensus        99 ~~G~y~iCf~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~-~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~  177 (217)
                      +.|+|++||+|  +.++..+|.++++++.|.+..-.... .+....+.++.++..+...|..|.+.|.|.|.||+|.|.+
T Consensus        90 ~~G~Y~fCFsN--~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~t  167 (209)
T KOG1693|consen   90 GKGEYTFCFSN--EFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRST  167 (209)
T ss_pred             cceEEEEEecC--ccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999976  66777889999999988654322221 1233457899999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 027923          178 SEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKK  215 (217)
Q Consensus       178 ~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kk  215 (217)
                      ++++++||+|||++++++++++++.|++.||.||+.|+
T Consensus       168 v~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r  205 (209)
T KOG1693|consen  168 VESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRR  205 (209)
T ss_pred             hhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999876

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.6e-37  Score=235.40  Aligned_cols=184  Identities=21%  Similarity=0.344  Sum_probs=160.2

Q ss_pred             ceeEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEE
Q 027923           28 SDAIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACF  107 (217)
Q Consensus        28 ~~~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf  107 (217)
                      .-.+++.||||+++|||+.++.+..+..+|+|++| + ++.+|++.+.+|-|.++.+...+.+|.+++...++|.|++||
T Consensus        33 d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G-~-GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~Cf  110 (236)
T KOG3287|consen   33 DYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDG-A-GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVCF  110 (236)
T ss_pred             ccceEEEecCCCceeeeeeccCCeEEEEEEEEEec-C-CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEEE
Confidence            35789999999999999999999999999999987 2 367999999999999999988889999999999999999999


Q ss_pred             EeCCCCCCCCeEEEEEEEee---ccc---cccchHHhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027923          108 WVDGHNPGGGDVSVNIDWKT---GIA---AKDWESVARK-----EKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMRE  176 (217)
Q Consensus       108 ~n~~~~~~~~~~~v~f~~~~---g~~---~~d~~~~~~~-----~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~  176 (217)
                      +|  ++|..+.|.|+|++-.   |+.   +..|++.++.     ..++.+++.++.+.++|..+...|..+|.||.|+|.
T Consensus       111 DN--sFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~  188 (236)
T KOG3287|consen  111 DN--SFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRN  188 (236)
T ss_pred             cC--ccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            76  4555567899998732   322   2234333222     246789999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 027923          177 VSEKTNSRVAWYSLMSLGVCIVVSGVQVWHLKRFFQKKK  215 (217)
Q Consensus       177 ~~es~~~rv~~~si~~~~vli~~~~~Qv~~lk~fF~~kk  215 (217)
                      +.+++..||.|||++|+.+||+++.+|||+|||+|+.|+
T Consensus       189 L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~  227 (236)
T KOG3287|consen  189 LQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKS  227 (236)
T ss_pred             HHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCC
Confidence            999999999999999999999999999999999999875

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=2.8e-39  Score=251.27  Aligned_cols=180  Identities=31%  Similarity=0.554  Sum_probs=5.5

Q ss_pred             eEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEE--CCCCCeeeeeecc-ccceEEEEecccceeeEE
Q 027923           30 AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVT--SPYGNNLHNRENV-TYGQFAFTTHEAGNYLAC  106 (217)
Q Consensus        30 ~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~--~p~g~~v~~~~~~-~~~~~~f~~~~~G~y~iC  106 (217)
                      |++|.|+||+++||++++++|+.+.++|++.+++  +..++++.|+  +|+|+++++.... ++|+|+|+++++|+|++|
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~--~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iC   78 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGG--GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQIC   78 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeecc--ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEE
Confidence            6899999999999999999999999999999864  2468999999  5566888888555 457999999999999999


Q ss_pred             EEeCCCCCCCCeEEEEEEEeeccccccchHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 027923          107 FWVDGHNPGGGDVSVNIDWKTGIAAKDWESVARKEKLEGVELELRKLEGAVEAIHENLLYLKTKEAEMREVSEKTNSRVA  186 (217)
Q Consensus       107 f~n~~~~~~~~~~~v~f~~~~g~~~~d~~~~~~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~r~~~es~~~rv~  186 (217)
                      |+|+.+.+.. ++.|+|+++.|.+..|.++.++++++++++..|++|.+.+..|+++|+|++.|+++|+++++++++|++
T Consensus        79 f~n~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~  157 (183)
T PF01105_consen   79 FDNSSSSFSP-SKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIM  157 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEcCCCCccc-cEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence            9986543221 389999999987766666788899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhh
Q 027923          187 WYSLMSLGVCIVVSGVQVWHLKRFFQ  212 (217)
Q Consensus       187 ~~si~~~~vli~~~~~Qv~~lk~fF~  212 (217)
                      +|+++++++++++++||+++||+||+
T Consensus       158 ~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  158 WWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             --------------------HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=94.61  E-value=0.67  Score=31.62  Aligned_cols=45  Identities=24%  Similarity=0.446  Sum_probs=32.6

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|+|+.+..+ .+...|.  .+|++...|.|++.+.-.+
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            3589999999999755332 3334565  4788899999999987543

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.66  E-value=0.85  Score=29.23  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=41.8

Q ss_pred             ceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccc-----cceEEEEecccceeeEEE
Q 027923           41 KCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVT-----YGQFAFTTHEAGNYLACF  107 (217)
Q Consensus        41 ~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~-----~~~~~f~~~~~G~y~iCf  107 (217)
                      ..|..++++|+.+.+.-  ...    ..+.++.+.+++|..+.+....+     .....|+++.+|.|.+=+
T Consensus         3 D~y~f~v~ag~~l~i~l--~~~----~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPAGGTLTIDL--SGG----SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEESTTEEEEEEE--CET----TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEE--cCC----CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            45777888988876653  322    12677999999988776633222     345778899999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=92.43  E-value=2.2  Score=29.15  Aligned_cols=62  Identities=19%  Similarity=0.226  Sum_probs=40.2

Q ss_pred             CCcEEEEEEEEeeCCC----CCCceEEEEEECCCCCeeeeeec---cccceEEEEe--c---ccceeeEEEEeC
Q 027923           49 NNVVVLADYVVVSDDH----SHSPTISVKVTSPYGNNLHNREN---VTYGQFAFTT--H---EAGNYLACFWVD  110 (217)
Q Consensus        49 ~~~~i~~~y~v~~~~~----~~~~~i~~~v~~p~g~~v~~~~~---~~~~~~~f~~--~---~~G~y~iCf~n~  110 (217)
                      +|+.+.+.-.+.+.+.    ..+..+.+.|.||+|+.+.....   ...|.++++.  +   ..|.|++=+...
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~   86 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD   86 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence            4777777666554431    12458999999999999877665   2356554433  3   359999998763

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=89.60  E-value=4.9  Score=27.33  Aligned_cols=64  Identities=17%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             cCCcEEEEEEEEeeCCCC----CCceEEEEEECCCCC----eee-eeeccccce--EEEEecccceeeEEEEeCC
Q 027923           48 QNNVVVLADYVVVSDDHS----HSPTISVKVTSPYGN----NLH-NRENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        48 ~~~~~i~~~y~v~~~~~~----~~~~i~~~v~~p~g~----~v~-~~~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ..|....+.....+....    +...+.+.|.+|++.    .+. .-....+|.  .+|++...|.|++++.-++
T Consensus        18 ~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~g   92 (101)
T PF00630_consen   18 VVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKING   92 (101)
T ss_dssp             ETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred             ECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEECC
Confidence            345555555444433111    123678999999997    332 223334565  4778889999999987543

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A

Probab=89.51  E-value=3.4  Score=27.32  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEe
Q 027923           51 VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTT   97 (217)
Q Consensus        51 ~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~   97 (217)
                      ....+.|.+...    ...+.+.|+|.+|++|++..  ..+.|.+.|..
T Consensus        12 ~~~~~~~~l~~~----a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~W   56 (81)
T PF13860_consen   12 TKGSIEYTLPED----ADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTW   56 (81)
T ss_dssp             CEEEEEEEECSS----CEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE
T ss_pred             EEEEEEEeCCCc----ccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEE
Confidence            478888877653    24789999999999998753  22345555544

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=85.52  E-value=5.6  Score=27.79  Aligned_cols=56  Identities=7%  Similarity=0.084  Sum_probs=36.4

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecccc--ceEEEEe--cccceeeEEEEeCC
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTY--GQFAFTT--HEAGNYLACFWVDG  111 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~--~~~~f~~--~~~G~y~iCf~n~~  111 (217)
                      +..+.+.|...      ...+.+.|+|.+|+++|+..-...  ...++..  ...|.|.+=+.+.+
T Consensus        36 ~~~l~I~F~~~------~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~   95 (106)
T PF11589_consen   36 GNNLSIEFESP------IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGN   95 (106)
T ss_dssp             TTEEEEEESS--------SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECT
T ss_pred             CCEEEEEEcCC------CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCC
Confidence            56677777422      347999999999999998754432  2355555  46899999998754

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D

Probab=84.56  E-value=4.2  Score=28.14  Aligned_cols=70  Identities=7%  Similarity=0.019  Sum_probs=28.5

Q ss_pred             eeEEEEEcCCCcceE--eeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEE
Q 027923           29 DAIWLNLPATGTKCV--SEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLAC  106 (217)
Q Consensus        29 ~~l~~~l~~~~~~Cf--~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iC  106 (217)
                      +.+.+.+.++  .|-  ...+++|+.+.+.+.-.+..     .-++.+.+  ...-..-..-....+.|++..+|+|.+=
T Consensus        21 ~~v~I~~~~~--~f~P~~i~v~~G~~v~l~~~N~~~~-----~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~~~   91 (104)
T PF13473_consen   21 QTVTITVTDF--GFSPSTITVKAGQPVTLTFTNNDSR-----PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYEFY   91 (104)
T ss_dssp             ---------E--EEES-EEEEETTCEEEEEEEE-SSS------EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEEEB
T ss_pred             ccccccccCC--eEecCEEEEcCCCeEEEEEEECCCC-----cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEEEE
Confidence            4455555433  333  23567788787776544321     23344433  1111111111245678888999999975


Q ss_pred             E
Q 027923          107 F  107 (217)
Q Consensus       107 f  107 (217)
                      .
T Consensus        92 C   92 (104)
T PF13473_consen   92 C   92 (104)
T ss_dssp             -
T ss_pred             c
Confidence            4

>PRK05842 flgD flagellar basal body rod modification protein; Reviewed

Probab=83.33  E-value=7  Score=32.74  Aligned_cols=60  Identities=10%  Similarity=0.005  Sum_probs=39.5

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeecc----ccceEEEEec---------ccceeeEEEEe
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENV----TYGQFAFTTH---------EAGNYLACFWV  109 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~----~~~~~~f~~~---------~~G~y~iCf~n  109 (217)
                      +..+.+.|............+.+.|+|.+|++|++-...    +.|.+.|...         ..|.|+|=...
T Consensus       148 g~~~~~~~~l~~~~~~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a  220 (295)
T PRK05842        148 NNKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY  220 (295)
T ss_pred             CCceEEEEeccccccccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence            335666665543211123479999999999999876433    2477777753         26899998853

>PRK06655 flgD flagellar basal body rod modification protein; Reviewed

Probab=81.42  E-value=8.7  Score=30.91  Aligned_cols=56  Identities=18%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeec--cccceEEEEec---------ccceeeEEEEe
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNREN--VTYGQFAFTTH---------EAGNYLACFWV  109 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~--~~~~~~~f~~~---------~~G~y~iCf~n  109 (217)
                      +....+.|...+.    ...+.+.|+|.+|++|++-..  .+.|.+.|...         .+|.|++=+..
T Consensus       112 ~~~~~~~~~l~~~----a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A  178 (225)
T PRK06655        112 GGTTPFGVELPSA----ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASA  178 (225)
T ss_pred             CCceEEEEEcCCC----CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEE
Confidence            3456677765543    247999999999999986543  44677777553         37899998864

>PRK14081 triple tyrosine motif-containing protein; Provisional

Probab=80.88  E-value=32  Score=32.24  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=48.1

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEeCCCCCC---CCeEEEEEEEe
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDGHNPG---GGDVSVNIDWK  126 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n~~~~~~---~~~~~v~f~~~  126 (217)
                      |+.+.+.-.+.++   .+..+.+.|+. +|+.+...+-.....+.|++..+|.|++=+...+..+.   ...+.|.+.+.
T Consensus       401 G~~i~i~v~a~gg---~~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~  476 (667)
T PRK14081        401 GEEIKIRVIAEGG---TNLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH  476 (667)
T ss_pred             CCeEEEEEEecCC---CeEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence            4455554433322   24566677766 77777666666678999999999999998876554432   24577777664

>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]

Probab=80.79  E-value=19  Score=26.17  Aligned_cols=41  Identities=20%  Similarity=0.235  Sum_probs=25.2

Q ss_pred             eEEEEEECCCCCeeeeeecc-ccce-EEEEec-----ccceeeEEEEe
Q 027923           69 TISVKVTSPYGNNLHNRENV-TYGQ-FAFTTH-----EAGNYLACFWV  109 (217)
Q Consensus        69 ~i~~~v~~p~g~~v~~~~~~-~~~~-~~f~~~-----~~G~y~iCf~n  109 (217)
                      .-.+.+++|+|..+...... .+++ ..+..+     ..|.|.+=+..
T Consensus        61 fs~~~l~~~d~~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~Wrv  108 (127)
T COG2372          61 FSGAKLTGPDGEEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRV  108 (127)
T ss_pred             cceeEEECCCCCccccCcccccccCCcEEEecCcccCCCCcEEEEEEE
Confidence            45688899999987654322 1221 223332     56999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.55
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	94.08
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	93.13
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	93.1
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.91
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	92.89
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	92.87
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.65
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.43
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.69
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.56
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	91.44
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	91.02
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	90.86
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	90.49
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	90.06
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.68
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.35
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.12
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	89.03
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	88.48
4g9s_B	111	Inhibitor of G-type lysozyme, goose-type lysozyme;	88.48
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.29
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	87.41
2dib_A	128	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.22
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	85.53
2di8_A	111	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.99
2ds4_A	113	Tripartite motif protein 45; beta-sandwich, immuno	84.58
2eec_A	125	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.36
3osv_A	138	Flagellar basal-BODY ROD modification protein FLG;	83.16
2di9_A	131	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.79
2k7p_A	188	Filamin-A; IG-like, ABP-280, actin binding protein	82.76
2d7o_A	111	Filamin-C; beta-sandwich, immunoglobulin-like fold	82.47
3c12_A	138	FLGD, flagellar protein; HOOK capping, IG-like dom	81.17
3d33_A	108	Domain of unknown function with AN immunoglobulin	81.06

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.55  E-value=0.2  Score=42.39  Aligned_cols=89  Identities=12%  Similarity=0.061  Sum_probs=58.4

Q ss_pred             EEEEcCCCcceEeeecc-CCcEEEEEEEEeeCCCCCCceEEEEEE-C----CC---CC--eeeeeecc-c---cceEEEE
Q 027923           32 WLNLPATGTKCVSEEIQ-NNVVVLADYVVVSDDHSHSPTISVKVT-S----PY---GN--NLHNRENV-T---YGQFAFT   96 (217)
Q Consensus        32 ~~~l~~~~~~Cf~~~v~-~~~~i~~~y~v~~~~~~~~~~i~~~v~-~----p~---g~--~v~~~~~~-~---~~~~~f~   96 (217)
                      ++.|.+|+....-..+. +|..+.=.|.+.++      +|.|.|+ .    ++   |.  .+...... .   -..-++.
T Consensus       281 ~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~------DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~~~  354 (403)
T 1olm_A          281 SVQISRGSSHQVEYEILFPGCVLRWQFMSDGA------DVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLT  354 (403)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESSS------CEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEE
T ss_pred             EEEEcCCCEEEEEEEEcCCCCEEEEEEEecCC------cEEEEEEEecccccccCCCcceEEeeeeeecCccccccCEEE
Confidence            38889999888888887 58888888887432      6777776 1    11   21  22221111 1   1134578


Q ss_pred             ecccceeeEEEEeCCCCCCCCeEEEEEEEeec
Q 027923           97 THEAGNYLACFWVDGHNPGGGDVSVNIDWKTG  128 (217)
Q Consensus        97 ~~~~G~y~iCf~n~~~~~~~~~~~v~f~~~~g  128 (217)
                      +.++|.|.++|+|+.+  +...++|.+.+.+-
T Consensus       355 ~~~~G~y~l~fdNs~S--~~~~k~l~y~v~v~  384 (403)
T 1olm_A          355 CSDPGIYVLRFDNTYS--FIHAKKVNFTVEVL  384 (403)
T ss_dssp             CCSCEEEEEEEECTTC--CCCSEEEEEEEEEE
T ss_pred             cCCCeEEEEEEecccc--ceeceEEEEEEEEe
Confidence            9999999999988543  33467887777764

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=94.08  E-value=0.07  Score=37.17  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=50.2

Q ss_pred             EEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCe---eeeeeccccceEEEEecccceeeEEEEe
Q 027923           34 NLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNN---LHNRENVTYGQFAFTTHEAGNYLACFWV  109 (217)
Q Consensus        34 ~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~---v~~~~~~~~~~~~f~~~~~G~y~iCf~n  109 (217)
                      .|.+++...+.-.+.+|+.+.+..   +.    +..+-|.|++|+++.   ++..+....+.|+-+.+.+|.|++=+..
T Consensus        23 ~I~g~~~~~Y~~~a~aGQ~l~V~l---s~----~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~   94 (114)
T 4dzg_A           23 SFTGYDTIHYTLVAXAGQTMTVXI---GG----SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQ   94 (114)
T ss_dssp             CCBTTCCEEEECCC-CCCEEEC-C---EE----STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEEC
T ss_pred             EecCCCceEEEEEecCCCEEEEEe---CC----CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEe
Confidence            577888899999999999998876   22    225678899999974   3444433346888999999999999875

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=93.13  E-value=0.52  Score=31.39  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             ceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      .++.+.|.+|+|+.+... .+..+|.  .+|++.+.|.|+++..-.+.+-..++-.+
T Consensus        22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~~I~GSPF~v   78 (93)
T 2d7n_A           22 GELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQF   78 (93)
T ss_dssp             SCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEE
T ss_pred             CCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCEeCCCCCeEE
Confidence            478999999999865322 2233554  57788999999999986554322345443

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=93.10  E-value=1.2  Score=29.90  Aligned_cols=45  Identities=16%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|+|..+... .+..+|.  .+|++...|.|.+.+.-.+
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            3478899999999754322 2333554  4778889999999986533

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.91  E-value=1.1  Score=31.40  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=36.2

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|..+..+ .+...|.  .+|++.+.|.|++++.-.+.+-..++-.|
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v   99 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTV   99 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCEECCCCCeEE
Confidence            3478899999999754332 2234554  47888999999999986444322344444

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.89  E-value=1.1  Score=30.74  Aligned_cols=55  Identities=13%  Similarity=0.259  Sum_probs=36.0

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|+.+... .+..+|.|  +|++.+.|.|++.+.-...+-..++-.+
T Consensus        43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v  100 (115)
T 2d7m_A           43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI  100 (115)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCEECCCCCEEE
Confidence            3478999999998754332 23345654  6788899999999976444322345444

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=92.87  E-value=0.99  Score=29.41  Aligned_cols=44  Identities=14%  Similarity=0.094  Sum_probs=30.1

Q ss_pred             ceEEEEEECCCCCeeee-eeccccce--EEEEecccceeeEEEEeCC
Q 027923           68 PTISVKVTSPYGNNLHN-RENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~-~~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ..+.+.|.+|+|..+.. -.+..+|.  .+|++.+.|.|.+.+.-.+
T Consensus        30 ~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           30 NMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             CCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            46888889999863322 12233555  4678889999999987543

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=92.65  E-value=1  Score=30.61  Aligned_cols=55  Identities=16%  Similarity=0.202  Sum_probs=35.4

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|..+... .+..+|.|  +|++.+.|.|.+.+.-...+-..++-.|
T Consensus        42 ~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~v   99 (108)
T 2dj4_A           42 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADEEIPRSPFKV   99 (108)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSSBCTTCSEEE
T ss_pred             CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEE
Confidence            4578999999999654322 23345554  6788899999999976443322334433

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.43  E-value=0.55  Score=31.44  Aligned_cols=46  Identities=17%  Similarity=0.163  Sum_probs=33.0

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~  112 (217)
                      ..++.+.|.+|+|+.+... .+..+|.  .+|++.+.|.|++++.-...
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            4479999999999865332 2233554  46788899999999986544

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.69  E-value=1  Score=30.45  Aligned_cols=54  Identities=17%  Similarity=0.284  Sum_probs=35.9

Q ss_pred             CceEEEEEECCCCCeeeeeeccccc--eEEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYG--QFAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~--~~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|++..+ .-.+..+|  ..+|++...|.|.+.+.-.+.+-..++-.+
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v   96 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEHIPESPYLV   96 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETTEECTTCSEEE
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECCEECCCcCEEE
Confidence            3468889999998655 22333455  468899999999999986443322344443

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=91.56  E-value=1.7  Score=29.88  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=35.3

Q ss_pred             ceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEE
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVS  120 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~  120 (217)
                      -.+.+.|.+|+|..+... .+...|.  .+|++++.|.|.+.+.-.+.+-..++-.
T Consensus        41 g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g~~I~GSPF~   96 (112)
T 2d7p_A           41 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFK   96 (112)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEE
T ss_pred             CCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECCeEcCCCCEE
Confidence            378999999999865332 2233454  5788899999999998654432234533

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=91.44  E-value=1.6  Score=28.79  Aligned_cols=45  Identities=16%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             CceEEEEEECCCCCeeee-eeccccce--EEEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHN-RENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~-~~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|+|..+.. -.+..+|.  .+|++.+.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            346888899999864321 12233555  4678889999999987543

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.02  E-value=1.1  Score=31.06  Aligned_cols=55  Identities=13%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|..+... .+..+|.|  +|++.+.|.|++.+.-...+-..++-.+
T Consensus        53 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPF~v  110 (119)
T 2e9j_A           53 EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGGDDIPLSPYRI  110 (119)
T ss_dssp             CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESSCBCTTCSEEE
T ss_pred             CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECCEECCCCCEEE
Confidence            3478899999999754222 23345554  6778899999999875443322334443

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=90.86  E-value=1.9  Score=28.35  Aligned_cols=52  Identities=15%  Similarity=0.278  Sum_probs=33.5

Q ss_pred             eEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           69 TISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        69 ~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      .+.+.|.+|++..+.-. +..+|.  .+|++.+.|.|.+.+.-...+-..++-.+
T Consensus        35 ~~~v~v~gp~~~~~~v~-d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v   88 (94)
T 2w0p_A           35 GLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVV   88 (94)
T ss_dssp             CEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             cEEEEEECCCCCeEEEE-ECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            57788889988654322 233554  57888999999999975443322334444

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=90.49  E-value=2.2  Score=29.13  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVNI  123 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  123 (217)
                      ...+.+.|.+|+|..+... .+..+|.  .+|++.+.|.|++.+.-.+.+-..++-.+.+
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~~V~gSPf~v~v  100 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARVKV  100 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEEE
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECCEECCCCCEEEEE
Confidence            3478888999988654332 3334565  4788899999999997644332234544433

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=90.06  E-value=3.9  Score=29.16  Aligned_cols=55  Identities=27%  Similarity=0.401  Sum_probs=35.8

Q ss_pred             CceEEEEEECCCCCeeeeeeccccc-eEEEEecccceeeEEEEeCC-CCCCCCeEEEE
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYG-QFAFTTHEAGNYLACFWVDG-HNPGGGDVSVN  122 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~-~~~f~~~~~G~y~iCf~n~~-~~~~~~~~~v~  122 (217)
                      ...+.+.|.+|++..+.-.+ ..+| ..+|++.+.|.|.+.+.-.+ .+-..++-.+.
T Consensus        75 ~g~l~v~I~gPs~~~~~~~d-~~dGy~V~YtP~~~G~y~I~Vk~~g~~hI~GSPF~v~  131 (138)
T 2nqc_A           75 SGALSVTIDGPSKVQLDCRE-CPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAK  131 (138)
T ss_dssp             SCCEEEEEESSSCCEEEEEE-ETTEEEEEEECCSCEEEEEEEEESSSCBCTTCSEEEE
T ss_pred             CCcEEEEEECCCCCeeeEEE-CCCcEEEEEEcCCCEEEEEEEEECCcccCCCCCeEEE
Confidence            34788999999997553333 2345 44778889999999987544 33223454443

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.68  E-value=3.6  Score=28.15  Aligned_cols=55  Identities=9%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             CceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEE
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVN  122 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  122 (217)
                      ...+.+.|.+|++..+. -.+..+|.  .+|++.+.|.|.+.+.-...+-..++-.+.
T Consensus        51 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~  107 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEIS-CIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPGSPFTAK  107 (115)
T ss_dssp             SSCEEEEEESSSCCEEC-CBCCSSSEEEEEEECSSCSCEEEEEEESSSBCTTCSEEEE
T ss_pred             CCceEEEEECCCCceEE-EEECCCCEEEEEEEeCCCeeEEEEEEECCEECCCCCEEEE
Confidence            34788999999985442 23334564  578889999999999754433223444443

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.35  E-value=1.2  Score=30.03  Aligned_cols=46  Identities=24%  Similarity=0.266  Sum_probs=32.8

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~  112 (217)
                      ...+.+.|.+|+|..+... .+..+|.|  +|++.+.|.|.+.+.-...
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            3478999999999865432 23335554  6788899999999975443

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.12  E-value=0.59  Score=32.42  Aligned_cols=72  Identities=14%  Similarity=0.238  Sum_probs=42.6

Q ss_pred             ccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           47 IQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        47 v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      +..|....+.....+.+   ...+.+.|.+|+|+.+-.. .+...|.  .+|++.+.|.|.+.+.-.+.+-..++-.+
T Consensus        27 ~~vg~~~~f~v~~~~ag---~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~~I~GSPF~v  101 (116)
T 2dmc_A           27 VKLGSAADFLLDISETD---LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI  101 (116)
T ss_dssp             CCTTSCEEEECCCSCCC---STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             cccCCceEEEEEecCCC---CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCEECCCCCeEE
Confidence            34455444444333322   3478899999999754332 2233554  57888999999999975443322345433

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=89.03  E-value=3.5  Score=27.18  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=34.8

Q ss_pred             CceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEE
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVN  122 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  122 (217)
                      ...+.+.|.+|++..+.-. +..+|.  .+|++++.|.|.+.+.-...+-..++-.+.
T Consensus        36 ~~~l~v~v~~p~~~~~~v~-d~~dGty~v~Y~p~~~G~y~i~V~~~g~~I~gSPF~v~   92 (97)
T 2bp3_A           36 EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNEQHVPGSPFTAR   92 (97)
T ss_dssp             SEEEEEEEEESSCCEEEEE-ECSSSEEEEEEECSSCEEEEEEEEETTEECTTCSEEEE
T ss_pred             CCcEEEEEECCCCCEEEEE-ECCCCEEEEEEEeCCCCcEEEEEEECCEECCCcCEEEE
Confidence            3478888899988554322 233554  578888999999999754432223344443

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=88.48  E-value=3.9  Score=27.09  Aligned_cols=62  Identities=16%  Similarity=0.175  Sum_probs=39.8

Q ss_pred             cCCcEEEEEEEEeeCCC--CCCceEEEEEECCCCCeeeeeecc--ccceE--EEEec---ccceeeEEEEe
Q 027923           48 QNNVVVLADYVVVSDDH--SHSPTISVKVTSPYGNNLHNRENV--TYGQF--AFTTH---EAGNYLACFWV  109 (217)
Q Consensus        48 ~~~~~i~~~y~v~~~~~--~~~~~i~~~v~~p~g~~v~~~~~~--~~~~~--~f~~~---~~G~y~iCf~n  109 (217)
                      ..|+.+.+..-+.+.+.  .....+.+.+.||+|+.+.++...  ..|.+  +|..+   ..|.|++....
T Consensus        14 rPGetV~~~~~~~~~~~~p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~   84 (102)
T 2p9r_A           14 KPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQK   84 (102)
T ss_dssp             CTTCEEEEEEEEECGGGCBCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEECCCCcCCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEE
Confidence            34788877766664421  113347899999999998775322  24544  44443   46999999975

>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A

Probab=88.48  E-value=1.1  Score=30.68  Aligned_cols=72  Identities=6%  Similarity=-0.065  Sum_probs=51.5

Q ss_pred             eEEEEEcCCCcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee---eccccceEEEEecccceeeEE
Q 027923           30 AIWLNLPATGTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR---ENVTYGQFAFTTHEAGNYLAC  106 (217)
Q Consensus        30 ~l~~~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~---~~~~~~~~~f~~~~~G~y~iC  106 (217)
                      .+.=.|.+++...+...+.+|+.+.+...  . +     ...+.|..|.+......   ......+++.+.+.+|.|++=
T Consensus        17 ~v~G~I~g~~~~~Y~~~a~aGQ~l~v~l~--s-~-----~~~~~i~~pg~~~~~~~~~~~~~~~~~~~~~LP~sG~Y~I~   88 (111)
T 4g9s_B           17 QYSGEIKGYDYDTYTFYAKKGQKVHVSIS--N-E-----GADTYLFGPGIDDSVDLSRYSPELDSHGQYSLPASGKYELR   88 (111)
T ss_dssp             EEEEEEETTCCEEEEEEECTTCEEEEEES--C-T-----TCEEEEECTTCSSCEECSTTCTTCCTTSCEECSSSEEEEEE
T ss_pred             EEEEEEeCCCceEEEEEecCCCEEEEEEe--c-C-----CccEEEECCCCccccccccccccCCceEEEEecCCccEEEE
Confidence            34557888999999999999999988752  2 1     34566888877643221   122245678889999999999


Q ss_pred             EEe
Q 027923          107 FWV  109 (217)
Q Consensus       107 f~n  109 (217)
                      +..
T Consensus        89 V~~   91 (111)
T 4g9s_B           89 VLQ   91 (111)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            863

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.29  E-value=4.3  Score=27.27  Aligned_cols=43  Identities=16%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             ceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCC
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~  111 (217)
                      ..+.+.|.+|.+..+.-.+ ..+|.  .+|++.+.|.|.+.+.-..
T Consensus        42 g~l~v~v~gp~~~~~~v~d-~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           42 GGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             SCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CceEEEEECCCCCeEEEEE-CCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            3678888999886543222 33554  5778889999999997544

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=87.41  E-value=5.4  Score=27.42  Aligned_cols=54  Identities=17%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             CceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|++..+. -.+..+|.  .+|++.+.|.|.+.+.-.+.+-..++-.+
T Consensus        48 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v  103 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVV  103 (119)
T ss_dssp             SEEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETSCBCSSCSEEE
T ss_pred             CCcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            45788999999884332 23334564  57888999999999986444322345444

>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.22  E-value=1.4  Score=30.91  Aligned_cols=55  Identities=16%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|..+... .+..+|.|  +|++.+.|.|++.+.-.+.+-..++-.+
T Consensus        56 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~~~i~V~~~g~~I~gSPF~v  113 (128)
T 2dib_A           56 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDVPIPNSPFKV  113 (128)
T ss_dssp             CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSCBCTTCSEEE
T ss_pred             CccEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCEEE
Confidence            3478889999999744322 22335554  6788899999999975443322334443

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=85.53  E-value=3.6  Score=34.07  Aligned_cols=79  Identities=13%  Similarity=0.109  Sum_probs=48.0

Q ss_pred             eEEEEEcCCCcceEeeeccC-----CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeee---eeccccce--EEEEecc
Q 027923           30 AIWLNLPATGTKCVSEEIQN-----NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHN---RENVTYGQ--FAFTTHE   99 (217)
Q Consensus        30 ~l~~~l~~~~~~Cf~~~v~~-----~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~---~~~~~~~~--~~f~~~~   99 (217)
                      .+.-..+|+.-+|+---++.     |....+.....+.+   ...+.+.|.+|+|..+--   ..+...|.  .+|++.+
T Consensus       247 ~l~~k~~pskv~a~GpGle~~g~~vg~p~~F~Vdt~~AG---~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y~P~~  323 (347)
T 4b7l_A          247 PLKPKLNPKKARAYGRGIEPTGNMVKQPAKFTVDTISAG---QGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEYLPKV  323 (347)
T ss_dssp             CCCCSCCGGGCEEESGGGSSSCCCTTSCEEEEEECTTTC---SCCEEEEEECTTSCEEECEEEESSTTCSEEEEEECCCS
T ss_pred             cccccccccceeEEeccccccCceeCCEEEEEEEeCCCC---CCceEEEEECCCCCeecCEEEEEcCCCCEEEEEEEECC
Confidence            33344555555666655543     34444444333322   347999999999985432   22333554  4788899


Q ss_pred             cceeeEEEEeCC
Q 027923          100 AGNYLACFWVDG  111 (217)
Q Consensus       100 ~G~y~iCf~n~~  111 (217)
                      .|.|.+-+.-.+
T Consensus       324 ~G~~~I~V~~~g  335 (347)
T 4b7l_A          324 TGLHKVTVLFAG  335 (347)
T ss_dssp             SSEEEEEEEETT
T ss_pred             CEeEEEEEEECC
Confidence            999999987544

>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=84.99  E-value=7.1  Score=26.50  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=35.2

Q ss_pred             ceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVNI  123 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  123 (217)
                      ..+.+.|.+|++..+.- .+..+|.  .+|++++.|.|.+.+.-...+-..++-.+.+
T Consensus        42 g~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v   98 (111)
T 2di8_A           42 GGISLAVEGPSKVDIQT-EDLEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTVKI   98 (111)
T ss_dssp             CCEEEEEESSSCCCEEC-CBCTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEEEE
T ss_pred             CceEEEEEcCCCceEEE-EECCCCEEEEEEEeCCCeEEEEEEEECCEECCCCCEEEEE
Confidence            36788888998854422 2334564  5788889999999998644432234544433

>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.58  E-value=7.1  Score=26.19  Aligned_cols=74  Identities=12%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             CCcEEEEEEEEeeCCC----CCCceEEEEEECCCC--Ceee-eeeccccceE--EEEecccceeeEEEEeCCCCCCCCeE
Q 027923           49 NNVVVLADYVVVSDDH----SHSPTISVKVTSPYG--NNLH-NRENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDV  119 (217)
Q Consensus        49 ~~~~i~~~y~v~~~~~----~~~~~i~~~v~~p~g--~~v~-~~~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~  119 (217)
                      .+....+..+..+.+.    .+...+.+.|.+|++  ..+. .-.+..+|.|  +|++.+.|.|++++.-...+-..++-
T Consensus        26 ~g~~~~F~V~~~d~~G~~~~~Gg~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~~G~y~i~V~~~g~~i~gSPF  105 (113)
T 2ds4_A           26 EKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKEPGVYTVWVCIKEQHVQGSPF  105 (113)
T ss_dssp             TTCCEEEEEECBBTTSSBCCCCCCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSSSEEEEEEEEESSCBCTTCSE
T ss_pred             cCCcEEEEEEEECCCCCCcccCCceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCCCeEEEEEEEECCEECCCCCE
Confidence            3455555555444320    013468888888886  2221 2233345654  67888999999999865443323444


Q ss_pred             EEE
Q 027923          120 SVN  122 (217)
Q Consensus       120 ~v~  122 (217)
                      .|.
T Consensus       106 ~v~  108 (113)
T 2ds4_A          106 TVT  108 (113)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.36  E-value=8.3  Score=26.81  Aligned_cols=65  Identities=20%  Similarity=0.371  Sum_probs=39.5

Q ss_pred             EEEeeCCCCCCceEEEEEECCCCCeeeeeeccccc-eEEEEecccceeeEEEEeCC-CCCCCCeEEEEE
Q 027923           57 YVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYG-QFAFTTHEAGNYLACFWVDG-HNPGGGDVSVNI  123 (217)
Q Consensus        57 y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~-~~~f~~~~~G~y~iCf~n~~-~~~~~~~~~v~f  123 (217)
                      |.+...+.+ ...+.+.|.+|++..+.-.+ ..+| ..+|++.+.|.|.+.+.-.. .+-..++-.+..
T Consensus        42 F~v~t~daG-~~~l~v~i~gp~~~~~~~~d-~~dGy~V~Y~P~~~G~y~I~V~~~g~~hI~gSPF~v~v  108 (125)
T 2eec_A           42 FFINTTRAG-PGTLSVTIEGPSKVKMDCQE-TPEGYKVMYTPMAPGNYLISVKYGGPNHIVGSPFKAKV  108 (125)
T ss_dssp             EEEECTTTC-SCCEEEEEESSSCCCCEEEE-CSSSEEEEECCSSCEEEEEEEEESSSCBCTTCSEEEEE
T ss_pred             EEEEEcCCC-CCcEEEEEECCCCCcceeEE-CCCCEEEEEEcCCCeEEEEEEEECCcccCCCCCeEEEE
Confidence            444443332 34788999999986553333 2355 34677889999999987544 332234544433

>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}

Probab=83.16  E-value=7  Score=27.66  Aligned_cols=55  Identities=16%  Similarity=0.120  Sum_probs=38.7

Q ss_pred             cEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEec---------ccceeeEEEEe
Q 027923           51 VVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTTH---------EAGNYLACFWV  109 (217)
Q Consensus        51 ~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~---------~~G~y~iCf~n  109 (217)
                      ....+.|.+...    ...+.+.|+|.+|++|++-.  ..+.|.+.|...         .+|.|++-+.-
T Consensus        24 ~~~~~~~~l~~~----a~~v~v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~v~a   89 (138)
T 3osv_A           24 DTFKASLNLPVS----SSNVWVNVYDDKGTVVNRINLGQQAAGSVSFMWDGKDSSGNIMPPGTYKFEAQT   89 (138)
T ss_dssp             SCEEEEEEESBC----EEEEEEEEECTTSCEEEEEEEEEECSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred             CeEEEEEECCCC----CcEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCccEEEEEEE
Confidence            346677776543    24799999999999998753  345676666654         25899998864

>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.79  E-value=10  Score=26.54  Aligned_cols=53  Identities=11%  Similarity=0.272  Sum_probs=34.6

Q ss_pred             ceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ..+.+.|.+|++..+.- .+..+|.  .+|++.+.|.|.+.+.-...+-..++-.+
T Consensus        62 ~~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g~~I~gSPF~v  116 (131)
T 2di9_A           62 GGLGLTVEGPCEAKIEC-SDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKA  116 (131)
T ss_dssp             SCEEEEECSSSCCEEEE-EECSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEE
T ss_pred             CeeEEEEEecCCceEEE-EECCCCEEEEEEEeCCCeeEEEEEEECCEECCCcCEEE
Confidence            46888889998854422 2233565  47888999999999976444322345444

>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; NMR {Homo sapiens}

Probab=82.76  E-value=13  Score=27.72  Aligned_cols=44  Identities=11%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             CceEEEEEECCCCCeeeeeeccccc--eEEEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYG--QFAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~--~~~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|++..+.-. +..+|  ..+|++...|.|.+++.-.+
T Consensus       127 ~g~l~v~I~gp~~~~~~~~-d~~dGty~v~Y~p~~~G~y~i~V~~~g  172 (188)
T 2k7p_A          127 EGGLSLAIEGPSKAEISCT-DNQDGTCSVSYLPVLPGDYSILVKYNE  172 (188)
T ss_dssp             SSCEEEEEECSSCCEEEEE-ECTTSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CCCeEEEEeCCCCCeEEEE-ECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            3468888999988654322 33456  56888899999999998644

>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.47  E-value=4.1  Score=27.73  Aligned_cols=55  Identities=16%  Similarity=0.304  Sum_probs=34.3

Q ss_pred             ceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVNI  123 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~f  123 (217)
                      ..+.+.|.+|++..+.- .+..+|.  .+|++.+.|.|.+.+.-...+-..++-.+.+
T Consensus        42 ~~l~v~v~gp~~~~~~v-~d~~dGty~V~Y~p~~~G~y~I~V~~~g~~I~gSPF~v~v   98 (111)
T 2d7o_A           42 GGLSLAVEGPSKAEITC-KDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKI   98 (111)
T ss_dssp             SCBCCEEESSSCCCBCC-CCCSSSEEEEEECCSSCEEEEEECBBSSCBCTTCSEEEEE
T ss_pred             CcEEEEEECCCCceEEE-EECCCCEEEEEEEeCCCeEEEEEEEECCEECCCcCEEEEE
Confidence            36778888998754422 2334564  4678889999999997544332234544433

>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}

Probab=81.17  E-value=10  Score=26.78  Aligned_cols=52  Identities=13%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             EEEEEEEeeCCCCCCceEEEEEECCCCCeeeeee--ccccceEEEEec---------ccceeeEEEEe
Q 027923           53 VLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRE--NVTYGQFAFTTH---------EAGNYLACFWV  109 (217)
Q Consensus        53 i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~--~~~~~~~~f~~~---------~~G~y~iCf~n  109 (217)
                      ..+.|. ...    ...+.+.|+|.+|++|++-.  ..+.|.+.|...         .+|.|++.+..
T Consensus        29 ~~~~~~-~~~----a~~v~v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg~d~~G~~~~~G~Y~~~v~a   91 (138)
T 3c12_A           29 AKGVVA-ATS----AGFVNFEITDANGTFVKQLSVPASAAGEVSFAWDGTDANGNRMAAGKYGITATQ   91 (138)
T ss_dssp             EEEEEE-ESS----SEEEEEEEECSSCCEEEEEEEEESSSEEEEEEECSBCTTSCBCCSEEEEEEEEE
T ss_pred             EEEEEe-cCC----CCEEEEEEEeCCCCEEEEEEcCCcCCceEEEEECCcCCCCCCCCCceEEEEEEE
Confidence            456666 432    34799999999999998754  345667777653         25899999964

>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}

Probab=81.06  E-value=9.2  Score=26.03  Aligned_cols=55  Identities=7%  Similarity=0.065  Sum_probs=40.1

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEE-CCCCCeeeeeecccc--ceEEEEec--ccceeeEEEEeC
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVT-SPYGNNLHNRENVTY--GQFAFTTH--EAGNYLACFWVD  110 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~-~p~g~~v~~~~~~~~--~~~~f~~~--~~G~y~iCf~n~  110 (217)
                      |..+.+.|...      ..++.+.|+ +..|++||++.-...  ..+.+...  .+|.|.+=+.+.
T Consensus        37 ~~~L~I~F~~~------~~~vtItI~~~~tG~iVY~~~v~~~~~~~~~I~L~~~~~G~Y~L~i~~~   96 (108)
T 3d33_A           37 GYLLTLKNASP------DRDMTIRITDMAKGGVVYENDIPEVQSAYITISIANFPAEEYKLEITGT   96 (108)
T ss_dssp             TTEEEEEESSC------CSEEEEEEEETTTCCEEEEEEECGGGTTEEEEECTTSCSEEEEEEEEEE
T ss_pred             CCEEEEEECCc------CCCEEEEEEECCCCcEEEEEeecCCCCcEEEEEcCCccCceEEEEEEeC
Confidence            56788877322      348999999 889999998865433  34555554  689999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.57
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	93.39
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.39
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	93.31
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	93.28
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	92.83
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.56
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	92.25
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	91.92
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.56
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.33
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.13
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	90.96
d1wmda1	116	Alkaline serine protease kp-43, C-terminal domain	89.79
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	89.13
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.6
d1qfha1	104	F-actin cross-linking gelation factor (ABP-120) re	88.37
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.19
d1nqja_	101	Class 1 collagenase {Bacteria (Clostridium histoly	83.95

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0011  Score=45.26  Aligned_cols=90  Identities=12%  Similarity=0.077  Sum_probs=55.9

Q ss_pred             EEEEcCCCcceEeeecc-CCcEEEEEEEEeeCCCCCCceEEEEEEC--CCC--------Ceeeeeeccc--c--ceEEEE
Q 027923           32 WLNLPATGTKCVSEEIQ-NNVVVLADYVVVSDDHSHSPTISVKVTS--PYG--------NNLHNRENVT--Y--GQFAFT   96 (217)
Q Consensus        32 ~~~l~~~~~~Cf~~~v~-~~~~i~~~y~v~~~~~~~~~~i~~~v~~--p~g--------~~v~~~~~~~--~--~~~~f~   96 (217)
                      ++.|.+|+....-.++. +|..+.=.|++.+      .+|.|.|.=  ..|        ..+.......  .  -.=+|.
T Consensus         7 tvtV~~G~~~~v~~~v~~~Gs~l~WeF~t~~------~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~~~   80 (119)
T d1olma2           7 SVQISRGSSHQVEYEILFPGCVLRWQFMSDG------ADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLT   80 (119)
T ss_dssp             EEEECTTCEEEEEEEECSTTCEEEEEEEESS------SCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEEEE
T ss_pred             EEEECCCCEEEEEEEEeCCCcEEEEEEEeCC------ccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccEEE
Confidence            46788888776666665 4788888887543      257777651  111        1232221111  1  123578


Q ss_pred             ecccceeeEEEEeCCCCCCCCeEEEEEEEeecc
Q 027923           97 THEAGNYLACFWVDGHNPGGGDVSVNIDWKTGI  129 (217)
Q Consensus        97 ~~~~G~y~iCf~n~~~~~~~~~~~v~f~~~~g~  129 (217)
                      +++.|.|.+||+|+.+  +...|.+.+.+++-.
T Consensus        81 ~~~~G~Y~l~FDNs~S--~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          81 CSDPGIYVLRFDNTYS--FIHAKKVNFTVEVLL  111 (119)
T ss_dssp             CCSCEEEEEEEECTTC--CCCSEEEEEEEEEEC
T ss_pred             cCCCEEEEEEEeCCcc--eEEeeEEEEEEEEEC
Confidence            8999999999987544  445688888887643

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.091  Score=34.00  Aligned_cols=55  Identities=13%  Similarity=0.259  Sum_probs=37.0

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|+.+... .+..+|.|  +|++.+.|.|++.+.-.+..-..++-.+
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~I~gSPF~v   93 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRI   93 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECCEECCCCCEEE
Confidence            3478999999999865332 23335654  8899999999999976554322345443

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.19  Score=32.94  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=43.1

Q ss_pred             CcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           50 NVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        50 ~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      |....+..+..+.+   ...+.+.|.+|+|+.+.-. .+..+|.  .+|++.+.|.|++.+.-.+..-..++-.+
T Consensus        21 g~~~~F~V~~~~ag---~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~~I~gSPf~v   92 (111)
T d2dmba1          21 GEEVGFVVDAKTAG---KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVDIPNSPFTV   92 (111)
T ss_dssp             SSEEEEEEECSSSC---SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CCEEEEEEEeCCCC---CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCEECCCCCEEE
Confidence            44444444433322   3478999999999865322 2334564  58899999999999986554333345444

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.3  Score=30.87  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=32.6

Q ss_pred             ceEEEEEECCCCCeee-eeeccccce--EEEEecccceeeEEEEeCCC
Q 027923           68 PTISVKVTSPYGNNLH-NRENVTYGQ--FAFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~-~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~  112 (217)
                      ..+.+.|.+|+|..+. .-.+...|.  .+|++.+.|.|++.+.-.+.
T Consensus        37 g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g~   84 (96)
T d1v05a_          37 NMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDE   84 (96)
T ss_dssp             CCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETTE
T ss_pred             CceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECCE
Confidence            3688999999997643 223334554  48899999999999976543

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.33  Score=31.00  Aligned_cols=46  Identities=17%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~  112 (217)
                      ...+.+.|.+|+|..+.-. .+...|.  .+|++.+.|.|++-+.-.+.
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g~   83 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYADE   83 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECCE
Confidence            3478999999999865332 2334565  47888899999999875443

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.31  E-value=0.29  Score=30.86  Aligned_cols=43  Identities=16%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             ceEEEEEECCCCCeeeeeeccccceE--EEEecccceeeEEEEeCC
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQF--AFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~~--~f~~~~~G~y~iCf~n~~  111 (217)
                      ..+.+.|.+|++..+.-.+ ..+|.|  +|++.+.|.|.+.+.-.+
T Consensus        33 g~l~v~v~gp~~~~v~v~d-~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          33 GGLAIAVEGPSKAEISFED-RKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             CCEEEEEEESSCCEEEEEE-CTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CceEEEEEeCCceEEEEEE-CCCCEEEEEEEECCCceEEEEEEECC
Confidence            3688888999987654333 335654  899999999999997544

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.43  Score=30.31  Aligned_cols=53  Identities=17%  Similarity=0.295  Sum_probs=35.2

Q ss_pred             ceEEEEEECCCCCeeeeeeccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ..+.+.|.+|++..+.-.+ ..+|.|  +|++.+.|.|.+.+.-....-..++-.+
T Consensus        35 g~l~v~i~gp~~~~v~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v   89 (98)
T d2di8a1          35 GGISLAVEGPSKVDIQTED-LEDGTCKVSYFPTVPGVYIVSTKFADEHVPGSPFTV   89 (98)
T ss_dssp             CCEEEEEESSSCCCEECCB-CTTSCEEEEECCCSCSEEEEEEEESSCBCTTCSEEE
T ss_pred             CceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            4788999999887653332 335654  6888999999999875444322345444

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.62  Score=29.12  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             CceEEEEEECCCCCeeeeeeccccceE--EEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYGQF--AFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~~~--~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|++..+.-.+. .+|.|  +|++.+.|.|.+-+.-.+
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~~-~dg~y~v~ytP~~~G~h~i~V~~~g   78 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTDN-QDGTCSVSYLPVLPGDYSILVKYNE   78 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEEC-SSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCCceEEEEEC-CCCEEEEEEEECCCccEEEEEEECC
Confidence            457889999999976544332 35665  689999999999886533

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.43  Score=30.38  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             ceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ..+++.|.+|+|..+-.. .+...|.|  +|++.+.|.|.+.+...+..-..++-.+
T Consensus        34 g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~~I~gSPf~v   90 (99)
T d2d7pa1          34 GVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKI   90 (99)
T ss_dssp             SCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSCBCTTCSEEE
T ss_pred             CeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCEECCCCCEEE
Confidence            378999999999865333 23345654  6888999999999986544322344443

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.49  Score=30.01  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=36.0

Q ss_pred             CceEEEEEECCCCCeeeee-eccccc--eEEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYG--QFAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~--~~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ...+.+.|.+|+|+.+... .+..+|  ..+|++.+.|.|++.+.-.+..-..++-.+
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g~~V~gSPf~v   91 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGGELVPHFPARV   91 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECCEECCCCCEEE
Confidence            3478899999999855332 233455  457899999999999976443322334443

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.46  Score=29.03  Aligned_cols=55  Identities=16%  Similarity=0.224  Sum_probs=36.9

Q ss_pred             ceEEEEEECCCCCeeeee-eccccce--EEEEecccceeeEEEEeCCCCCCCCeEEEE
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSVN  122 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v~  122 (217)
                      -++.+.|.+|+|..+... .+..+|.  .+|++.+.|.|++=+...+..-..++-.|.
T Consensus        15 g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g~~I~gSPf~v~   72 (80)
T d2d7na1          15 GELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFY   72 (80)
T ss_dssp             SCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSSCCTTCSEEEE
T ss_pred             CcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECCEECCCCCEEEE
Confidence            479999999999865332 2233554  578889999999998765543233455443

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.7  Score=29.17  Aligned_cols=53  Identities=17%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             ceEEEEEECCCCCeeeeeeccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ..+.+.|.+|++..+.-.+ ..+|.|  +|++.+.|.|.+.+.-.+.+-..++-.+
T Consensus        35 g~l~v~v~~p~~~~~~v~~-~~dg~y~v~y~P~~~G~y~i~V~~~g~~I~gSPF~v   89 (98)
T d2dica1          35 GGLGITVEGPSESKINCRD-NKDGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFRV   89 (98)
T ss_dssp             SCEEEEEESSSCCCCEEEE-CSSSCEEEEECCSSCEEEEEEEEETTEECTTCSEEE
T ss_pred             CCcEEEEEeCCCcEEEEEE-CCCCEEEEEEEECCCceEEEEEEECCEECCCCCEEE
Confidence            3688889999887553322 235554  6888999999999975443322345444

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.27  Score=32.24  Aligned_cols=46  Identities=17%  Similarity=0.225  Sum_probs=32.6

Q ss_pred             CceEEEEEECCCCCeeee-eeccccce--EEEEecccceeeEEEEeCCC
Q 027923           67 SPTISVKVTSPYGNNLHN-RENVTYGQ--FAFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~-~~~~~~~~--~~f~~~~~G~y~iCf~n~~~  112 (217)
                      ...+++.|.+|+|..+-. -.+..+|.  .+|++++.|.|++.+.-.+.
T Consensus        49 ~~~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g~   97 (115)
T d2diba1          49 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDDV   97 (115)
T ss_dssp             CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSSC
T ss_pred             CccEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECCE
Confidence            447888999999976532 22333555  47888999999999975443

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=1.2  Score=28.92  Aligned_cols=53  Identities=11%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             ceEEEEEECCCCCeeeeeeccccce--EEEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQ--FAFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~--~~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      ..+.+.|.+|++..+.-.+ ...|.  .+|++.+.|.|++.+.-.+..-..++-++
T Consensus        55 g~l~v~i~~p~~~~~~v~~-~~dG~y~v~ytP~~~G~y~i~V~~~g~~i~gSPf~v  109 (118)
T d2di9a1          55 GGLGLTVEGPCEAKIECSD-NGDGTCSVSYLPTKPGEYFVNILFEEVHIPGSPFKA  109 (118)
T ss_dssp             SCEEEEECSSSCCEEEEEE-CSSSEEEEEEECSSSSEEEEEEEESSCBCTTCSEEE
T ss_pred             CccEEEEecCCceEEEEEE-CCCCEEEEEEEeCCcEeEEEEEEECCEECCCCCEEE
Confidence            4788889999987653332 33555  48899999999999986544322345444

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.96  E-value=1.1  Score=28.85  Aligned_cols=45  Identities=16%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             ceEEEEEECCCCCeeeeeeccccceE--EEEecccceeeEEEEeCCC
Q 027923           68 PTISVKVTSPYGNNLHNRENVTYGQF--AFTTHEAGNYLACFWVDGH  112 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~~~~~~~~~--~f~~~~~G~y~iCf~n~~~  112 (217)
                      ..+.+.|.+|.+.+-..-.+..+|.|  +|++...|.|.+.+.-.+.
T Consensus        31 ~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g~   77 (108)
T d1qfha2          31 DKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGK   77 (108)
T ss_dssp             CCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETTE
T ss_pred             CeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECCE
Confidence            47888899998864333333345554  7888999999999875443

>d1wmda1 b.18.1.20 (A:319-434) Alkaline serine protease kp-43, C-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Proprotein convertase P-domain
domain: Alkaline serine protease kp-43, C-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=89.79  E-value=0.9  Score=29.86  Aligned_cols=76  Identities=12%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             EEcCCCcceEeeeccCCcEEEEEEEEeeCCCC------CCceEEEEEECCCCCeeeeeecc-----------ccceEEEE
Q 027923           34 NLPATGTKCVSEEIQNNVVVLADYVVVSDDHS------HSPTISVKVTSPYGNNLHNRENV-----------TYGQFAFT   96 (217)
Q Consensus        34 ~l~~~~~~Cf~~~v~~~~~i~~~y~v~~~~~~------~~~~i~~~v~~p~g~~v~~~~~~-----------~~~~~~f~   96 (217)
                      .|.+|+..=|...++++..+.++--..+...+      -..++++.|.+|+|..++-....           .-.+..+.
T Consensus         8 ~l~~g~~~ty~~~v~~~~~l~vtL~W~D~p~s~~a~~~LvnDLDL~V~~p~G~~~~~n~~~~~~~~~~D~~nnvE~V~i~   87 (116)
T d1wmda1           8 SLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPNGTQYVGNDFTSPYNDNWDGRNNVENVFIN   87 (116)
T ss_dssp             EECTTCEEEEEEEECTTSCEEEEEECCCCCCCTTCSCCCCSEEEEEEECTTSCEEETTCCSSSTTSCCCSSCSEEEEEES
T ss_pred             cCCCCCeEEEEEEeCCCCCEEEEEEeeCCCCCCCcchheeeeeeEEEEcCCCCEEeCCccccCccCccccCCcEeEEEEC
Confidence            45667766666677777766666555554211      13389999999999876422100           12356677


Q ss_pred             ecccceeeEEEEe
Q 027923           97 THEAGNYLACFWV  109 (217)
Q Consensus        97 ~~~~G~y~iCf~n  109 (217)
                      .+..|.|++-+.-
T Consensus        88 ~p~~G~y~i~V~~  100 (116)
T d1wmda1          88 APQSGTYTIEVQA  100 (116)
T ss_dssp             SCCSEEEEEEEEE
T ss_pred             CCCCeEEEEEEEE
Confidence            7789999998864

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.18  Score=31.59  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             ceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCC
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~  111 (217)
                      .++.+.|.+|+|+.+... ....+|.|  +|++.+.|.|.+-+.-.+
T Consensus        24 g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          24 QDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            379999999999876433 22335554  688899999999987543

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=1.8  Score=27.07  Aligned_cols=45  Identities=29%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             CceEEEEEECCCCCeeeeeeccccceEEEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNRENVTYGQFAFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~~~~~~~~~~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|++..+.-..+...-..+|++.+.|.|.+.+.-.+
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~~~g   78 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGG   78 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEEESS
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEEECC
Confidence            347889999999976644433222346889999999999996433

>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.37  E-value=1.1  Score=28.44  Aligned_cols=45  Identities=18%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             CceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCC
Q 027923           67 SPTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDG  111 (217)
Q Consensus        67 ~~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~  111 (217)
                      ...+.+.|.+|+|..+... .+..+|.|  +|++...|.|++-+.-.+
T Consensus        43 g~~~~v~v~~p~g~~~~~~v~d~~dGtY~v~y~p~~~G~~~i~V~~~g   90 (104)
T d1qfha1          43 GDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG   90 (104)
T ss_dssp             CCCEEEEEECGGGCEECCEEEECSSSEEEEEECCCSSEEEEEEEEETT
T ss_pred             CceeEEEEECCCCCEEeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            3478999999999865332 23345655  778889999999987543

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=0.67  Score=29.49  Aligned_cols=54  Identities=17%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             ceEEEEEECCCCCeeeee-eccccceE--EEEecccceeeEEEEeCCCCCCCCeEEE
Q 027923           68 PTISVKVTSPYGNNLHNR-ENVTYGQF--AFTTHEAGNYLACFWVDGHNPGGGDVSV  121 (217)
Q Consensus        68 ~~i~~~v~~p~g~~v~~~-~~~~~~~~--~f~~~~~G~y~iCf~n~~~~~~~~~~~v  121 (217)
                      .++.+.|.+|+|+.+-.. .....|.|  +|++.+.|.|++=+.-.+..-..++-.|
T Consensus        38 g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~~~g~~i~gSPf~v   94 (103)
T d2dmca1          38 SSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGNHVANSPVSI   94 (103)
T ss_dssp             TTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSSBCTTCSEEE
T ss_pred             CcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEEECCEECCCCCEEE
Confidence            478889999999865322 23335555  6888999999987654333222334443

>d1nqja_ b.23.2.1 (A:) Class 1 collagenase {Bacteria (Clostridium histolyticum) [TaxId: 1498]}

class: All beta proteins
fold: CUB-like
superfamily: Collagen-binding domain
family: Collagen-binding domain
domain: Class 1 collagenase
species: Bacteria (Clostridium histolyticum) [TaxId: 1498]

Probab=83.95  E-value=3.3  Score=25.72  Aligned_cols=66  Identities=11%  Similarity=-0.015  Sum_probs=40.9

Q ss_pred             CcceEeeeccCCcEEEEEEEEeeCCCCCCceEEEEEECCCCCeeeeeeccccc--eEEEEecccceeeEEEEe
Q 027923           39 GTKCVSEEIQNNVVVLADYVVVSDDHSHSPTISVKVTSPYGNNLHNRENVTYG--QFAFTTHEAGNYLACFWV  109 (217)
Q Consensus        39 ~~~Cf~~~v~~~~~i~~~y~v~~~~~~~~~~i~~~v~~p~g~~v~~~~~~~~~--~~~f~~~~~G~y~iCf~n  109 (217)
                      ...-|...++++..+.++..-..     ..++++.+++++|..+........+  ........+|.|.+=+..
T Consensus        21 d~D~y~f~l~~~~~v~i~l~~~~-----~~d~~l~lyd~~g~~~~~~~~~~~~~~~~~~~~~~~GtYyi~V~~   88 (101)
T d1nqja_          21 SRDYYSFEVKEEGEVNIELDKKD-----EFGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYK   88 (101)
T ss_dssp             CEEEEEEEESSCEEEEEEEEESS-----SSEEEEEEEECC----CCEECEEETTEEEEEEEECSEEEEEEEEE
T ss_pred             cceEEEEECCCCCEEEEEEeCCc-----cCCeEEEEEcCCCCEEEEecCCCCCceEEEEEecCCeEEEEEEEe
Confidence            45667778888988888765332     2378999999999877655433332  233334568999888754