Citrus Sinensis ID: 027962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Secondary Structure (PSIPRED)
cEEcccccEEccEEEEEcccccccccEEEEccccccccccccEEEEEcccEEEEEcccccccccccEEEEEEcccccEEEEEEccccccccccccccccccEEEEEEccEEEEEEccccccccccEEEEEEcccccccccccccccccccccccEEEEcccccccccccccEEEEEccccEEEEEcccccccccccccEEEEEEccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccEcccEEEEEccccccccEEEEEccccccccccccEEEEEcccEEEEEEcccccccccccEEEEEccccccEEEEEEcccccccccccccccccEEEEEcccEEEEEEcccccccccccEEEEEccccccccccccccccccccccEEEEcccccccccccccccEEEEccccEEEEEEccccccccccccccccccccEEEEEEEccc
Coil and Loop (DISEMBL)
mciglyglrlgDTWVLELSEnfcfgswqqlvthpspparsghsltriggnrtvlfggrgvgyevLNDVWFLDVYEGFFKWVQIpyelqnipagfslprvghsatliLGGRVliyggedsarrrkddfwvldtkaipftSVQQSMLDSRGLLLNMWKRLRaegykpncrsfhracpdysgryLYVFGGmvdglvqpadtsglrfdgRLLLVELVPLL
Flexible Loop (DISEMBL)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTkaipftsvqqsmlDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADtsglrfdgRLLLVELVPLL
Low Complexity Region (SEG)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRlllvelvpll
Disordered region (IsUnstruct)
*CIGLYGLRLGDTWVLELSENFCFGSWQQLVTH**********LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV***
Disordered Region (DISOPRED)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLV***SPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP***********LPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Disordered Region (DISEMBL)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Disordered Region (DISPRO)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9C8K7	478	F-box/kelch-repeat protei	yes	no	0.953	0.430	0.632	1e-69
Q67UX0	635	Putative adagio-like prot	no	no	0.708	0.240	0.288	6e-10
Q8W420	611	Adagio protein 2 OS=Arabi	no	no	0.759	0.268	0.276	2e-09
Q94BT6	609	Adagio protein 1 OS=Arabi	no	no	0.699	0.247	0.280	3e-08
Q7M3S9	943	RING finger protein B OS=	yes	no	0.430	0.098	0.372	2e-07
Q9C9W9	619	Adagio protein 3 OS=Arabi	no	no	0.513	0.179	0.346	4e-07
Q2R2W1	630	Adagio-like protein 3 OS=	no	no	0.560	0.192	0.281	4e-07
Q75AW4	699	Leucine carboxyl methyltr	yes	no	0.662	0.204	0.241	8e-07
Q5Z8K3	630	Adagio-like protein 1 OS=	no	no	0.569	0.195	0.295	2e-06
Q5A931	689	Leucine carboxyl methyltr	N/A	no	0.652	0.204	0.286	3e-06

>sp|Q9C8K7|FBK21_ARATH F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1

 Score =  262 bits (669), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 9/215 (4%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL G+RLGDTW+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY
Sbjct: 253 IGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGY 312

Query: 63  EVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121
           +VL+DVW LD+ E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R
Sbjct: 313 DVLDDVWILDIQEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYR 372

Query: 122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYS 178
            RKDDFWVLD K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D S
Sbjct: 373 HRKDDFWVLDVKTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCS 427

Query: 179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           GR+LYVFGGMVDGL+QPA +SGLRFDG L +VELV
Sbjct: 428 GRFLYVFGGMVDGLLQPAASSGLRFDGELFMVELV 462

Arabidopsis thaliana (taxid: 3702)

>sp|Q67UX0|ADO2_ORYSJ Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 27/180 (15%)

Query: 10  LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
           + DT+VL+L  N     W+ +    +PP R GH+L+ + G+R VLFGG G    +LNDV+
Sbjct: 332 MNDTFVLDL--NASKPEWRHINVRSAPPGRWGHTLSCLNGSRLVLFGGCGR-QGLLNDVF 388

Query: 70  FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV 129
            LD+      W +IP     +      PR  HS+  + G ++++ GG   +     D ++
Sbjct: 389 MLDLDAQQPTWREIPGLAPPV------PRSWHSSCTLDGTKLVVSGGCADSGVLLSDTYL 442

Query: 130 LDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 189
           LD                  +   +W+ + A  + P CR  H +   Y GR + +FGG+ 
Sbjct: 443 LDVT----------------MERPVWREIPAS-WTPPCRLGH-SLSVYDGRKILMFGGLA 484

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8W420|ADO2_ARATH Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 7   GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG---RGVGYE 63
           G  L DT++L+LS +    +W+++    +PP+R GH+LT  G  + ++FGG    G    
Sbjct: 421 GALLSDTFLLDLSMDI--PAWREIPVPWTPPSRLGHTLTVYGDRKILMFGGLAKNGTLRF 478

Query: 64  VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSAR 121
             NDV+ +D+ E    W  +     ++P G + P  R+ H A  + GGR+LI+GG  +  
Sbjct: 479 RSNDVYTMDLSEDEPSWRPVIGYGSSLPGGMAAPPPRLDHVAISLPGGRILIFGGSVAGL 538

Query: 122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
                 ++LD                       W+ L  +G  P     H  C    G  
Sbjct: 539 DSASQLYLLDPNE----------------EKPAWRILNVQGGPPRFAWGHTTCV-VGGTR 581

Query: 182 LYVFGGMV 189
           L V GG  
Sbjct: 582 LVVLGGQT 589

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO2) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94BT6|ADO1_ARATH Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 31/182 (17%)

Query: 10  LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
           + DT+VL+L+ ++    WQ +     PP R GH+LT + G+  V+FGG G    +LNDV+
Sbjct: 318 MNDTFVLDLNSDY--PEWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQ-QGLLNDVF 374

Query: 70  FLDVYEGFFKWVQIPYELQNIPAGFS--LPRVGHSATLILGGRVLIYGGEDSARRRKDDF 127
            L++      W +I        +G +  LPR  HS+  + G ++++ GG   +     D 
Sbjct: 375 VLNLDAKPPTWREI--------SGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDT 426

Query: 128 WVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGG 187
           ++LD       S+++           +W+ + A  + P  R  H     Y GR + +FGG
Sbjct: 427 FLLD------LSIEKP----------VWREIPA-AWTPPSRLGH-TLSVYGGRKILMFGG 468

Query: 188 MV 189
           + 
Sbjct: 469 LA 470

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO1) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms. APRR1 and APRR5 seem to be substrates of the SCF(ADO1) complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 9/102 (8%)

Query: 27  WQQLVTHPSPPA-RSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF--FKWVQI 83
           W+++    +PP  RSGHS T I  N+ ++FGG G     LND+  L + EG   ++W Q 
Sbjct: 218 WKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHI-EGANEYRWEQP 276

Query: 84  PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKD 125
            Y    IP      R  H+   I GGRV IY G  S     D
Sbjct: 277 SYLGLEIPQA----RFRHTTNFI-GGRVYIYAGTGSGNLMGD 313

Dictyostelium discoideum (taxid: 44689)

>sp|Q9C9W9|ADO3_ARATH Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 13/124 (10%)

Query: 10  LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
           L DT+VL L        WQ++    SPP R GH+L+ + G+  V+FGG G    +LNDV+
Sbjct: 330 LDDTFVLNLDAEC--PEWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCG-RQGLLNDVF 386

Query: 70  FLDVYEGFFKWVQIPYELQNIPAGFS--LPRVGHSATLILGGRVLIYGGEDSARRRKDDF 127
            LD+      W ++        AG +  LPR  HS+  I G ++++ GG   A     D 
Sbjct: 387 VLDLDAKHPTWKEV--------AGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDT 438

Query: 128 WVLD 131
           ++LD
Sbjct: 439 FLLD 442

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R2W1|ADO3_ORYSJ Adagio-like protein 3 OS=Oryza sativa subsp. japonica GN=Os11g0547000 PE=2 SV=2

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 7   GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV-- 64
           G+ L DT++L+L++     +W+++ T  SPP+R GH+L+  G  +  +FGG      +  
Sbjct: 444 GVLLSDTFLLDLTKEK--PAWKEIPTSWSPPSRLGHTLSVFGKTKLFMFGGLAKSGSLRL 501

Query: 65  -LNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR 123
              D + +D  E   +W Q+       P+    PR+ H A  +  GR++I+GG  +    
Sbjct: 502 RSCDAYTMDAGEDSPQWRQL--ATTGFPSIGPPPRLDHVAVSLPCGRIIIFGGSIAGLHS 559

Query: 124 KDDFWVLD 131
               ++LD
Sbjct: 560 PSQLFLLD 567

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex. The SCF(ADO3) E3 ubiquitin ligase complex is involved in the regulation of circadian clock-dependent processes including transition to flowering time, hypocotyl elongation, cotyledons and leaves movement rhythms.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75AW4|LCMT2_ASHGO Leucine carboxyl methyltransferase 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PPM2 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 43/186 (23%)

Query: 34  PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAG 93
           P+PPAR  H+ T++      L GGR    + L D W L + +G + W         + A 
Sbjct: 435 PAPPARMCHTFTKLDDRTIFLVGGRQSPTKPLGDAWLLKLRDGEWHW--------EMCAP 486

Query: 94  FSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN 153
              PR  H+   +  G+ LIYGGE         F + D ++  +                
Sbjct: 487 LMYPRFRHNCVNVGKGKALIYGGETDGAT----FLIYDCESNTY---------------- 526

Query: 154 MWKRLRAEGYKP-NCRSFHRA-----CPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRL 207
                    Y+P   R+F R      C D+     Y+ GG +D +          FD R 
Sbjct: 527 ---------YEPVYPRTFPRKVSAAMCYDFQSNRGYILGGALDNMEVDDTLCTFAFDART 577

Query: 208 LLVELV 213
             +E++
Sbjct: 578 NSIEIL 583

Probable S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. May methylate the carboxyl group of leucine residues to form alpha-leucine ester residues.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5Z8K3|ADO1_ORYSJ Adagio-like protein 1 OS=Oryza sativa subsp. japonica GN=Os06g0694000 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 9/132 (6%)

Query: 7   GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV-- 64
           G+ L DT++L+++ +     W+++    +PP+R GHS++  GG + ++FGG      +  
Sbjct: 441 GVLLSDTYLLDVTMDKPV--WREVPASWTPPSRLGHSMSVYGGRKILMFGGLAKSGPLRL 498

Query: 65  -LNDVWFLDVYEGFFKWVQIP---YELQNIPAGF-SLPRVGHSATLILGGRVLIYGGEDS 119
             +DV+ +D+ E    W  +          PAG    PR+ H A  + GGRVLI+GG  +
Sbjct: 499 RSSDVFTMDLSEEEPCWRCLTGSGMPGAGNPAGAGPPPRLDHVAVSLPGGRVLIFGGSVA 558

Query: 120 ARRRKDDFWVLD 131
                   ++LD
Sbjct: 559 GLHSASQLYLLD 570

Component of E3 ubiquitin ligase complexes that plays a central role blue-light-dependent circadian cycles. Acts as a blue-light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5A931|LCMT2_CANAL Leucine carboxyl methyltransferase 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PPM2 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 30/171 (17%)

Query: 36  PPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFS 95
           P AR  H+LT +G N  VL GGR        DV+  D  +   KW +    L ++P G  
Sbjct: 431 PTARMCHTLTNLGEN-LVLIGGRSRPGVFFKDVYMFDTAK---KWTR----LADLPVG-- 480

Query: 96  LPRVGHSATLILGGRVLIYGGEDSARRRKDD--FWVLDTKAIPFTSVQQSMLDSRGLLLN 153
             R  H+   I    VLI+GG D++     D  F + +T    +T V             
Sbjct: 481 --RSRHATVKISDHEVLIFGGLDASSSTTGDELFLLCNTNTNSYTPV------------- 525

Query: 154 MWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFD 204
             K +      P  ++   AC  + G+  Y+FGGM D  V   ++   RF+
Sbjct: 526 --KPIGDNDNHP-IKNLQSACMIFDGKQGYIFGGMEDINVPIVNSKLYRFE 573

Probable S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. May methylate the carboxyl group of leucine residues to form alpha-leucine ester residues.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
225443349	473	PREDICTED: F-box/kelch-repeat protein At	0.976	0.446	0.716	1e-84
147799808	473	hypothetical protein VITISV_029196 [Viti	0.976	0.446	0.716	2e-84
224100511	475	predicted protein [Populus trichocarpa]	0.893	0.406	0.709	2e-82
356522260	498	PREDICTED: F-box/kelch-repeat protein At	0.976	0.423	0.674	1e-81
255555596	462	ubiquitin-protein ligase, putative [Rici	0.967	0.452	0.719	3e-81
224109986	469	predicted protein [Populus trichocarpa]	0.967	0.445	0.725	2e-80
356526302	459	PREDICTED: F-box/kelch-repeat protein At	0.916	0.431	0.640	8e-72
297852882	477	hypothetical protein ARALYDRAFT_474268 [	0.953	0.431	0.632	1e-68
18403574	478	F-box/kelch-repeat protein [Arabidopsis	0.953	0.430	0.632	8e-68
51968990	476	unknown protein [Arabidopsis thaliana] g	0.953	0.432	0.632	1e-67

>gi|225443349|ref|XP_002264976.1| PREDICTED: F-box/kelch-repeat protein At1g51550 [Vitis vinifera] gi|297735772|emb|CBI18459.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (813), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGLYGLRLGDTW+L+LSEN CFG+W ++VTHPSPPARSGH+LT IGG+RTVLFGGRG+ Y
Sbjct: 259 IGLYGLRLGDTWMLDLSENLCFGTWHEVVTHPSPPARSGHTLTCIGGSRTVLFGGRGLSY 318

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
            VLND+W  +  E + KWVQI YEL+N+P G SLPRVGHSATLILGGRVLIYGGEDS R 
Sbjct: 319 NVLNDLWLFEFSEVYSKWVQILYELKNVPGGISLPRVGHSATLILGGRVLIYGGEDSQRH 378

Query: 123 RKDDFWVLDTKAI-PFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
           RKDDFWVLDT AI     +    L+SRGLL+N+WKRL AEGYKP CRSFH AC D SGR+
Sbjct: 379 RKDDFWVLDTGAITSVNPINPIPLNSRGLLVNIWKRLNAEGYKPECRSFHGACTDRSGRF 438

Query: 182 LYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           L+VFGGMVDGL++PA+ +G+RFD  L L ELV
Sbjct: 439 LFVFGGMVDGLIRPAEPAGMRFDAELFLAELV 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799808|emb|CAN68359.1| hypothetical protein VITISV_029196 [Vitis vinifera]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGLYGLRLGDTW+L+LSEN CFG+W ++VTHPSPPARSGH+LT IGG+RTVLFGGRG+ Y
Sbjct: 259 IGLYGLRLGDTWMLDLSENLCFGTWHEVVTHPSPPARSGHTLTCIGGSRTVLFGGRGLSY 318

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
            VLND+W  +  E + KWVQI YEL+N+P G SLPRVGHSATLILGGRVLIYGGEDS R 
Sbjct: 319 NVLNDLWLFEFSEVYSKWVQILYELKNVPGGISLPRVGHSATLILGGRVLIYGGEDSQRH 378

Query: 123 RKDDFWVLDTKAI-PFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
           RKDDFWVLDT AI     +    L+SRGLL+N+WKRL AEGYKP CRSFH AC D SGR+
Sbjct: 379 RKDDFWVLDTGAITSVNPINPIPLNSRGLLVNIWKRLNAEGYKPECRSFHGACTDRSGRF 438

Query: 182 LYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           L+VFGGMVDGL++PA+ +G+RFD  L L ELV
Sbjct: 439 LFVFGGMVDGLIRPAEPAGMRFDAELFLAELV 470

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100511|ref|XP_002311905.1| predicted protein [Populus trichocarpa] gi|222851725|gb|EEE89272.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/210 (70%), Positives = 168/210 (80%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGLYGLRLGDTW+LELSENFC G+W +LV HPSPP RSGH+LT I G  TVLFGGRG+GY
Sbjct: 257 IGLYGLRLGDTWILELSENFCSGTWIELVAHPSPPPRSGHTLTCIEGTGTVLFGGRGLGY 316

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           +VL+DVW L   E   KWVQ+ Y LQ+IP G SLPRVGHSATLILGGR+LIYGGEDS R 
Sbjct: 317 DVLHDVWLLQASEDQLKWVQMLYNLQDIPEGVSLPRVGHSATLILGGRLLIYGGEDSQRH 376

Query: 123 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYL 182
           RK DFWVLD   IP    Q + L+SRGL  NMW+RL+A+GYKPNCRSFHRAC D+SGR L
Sbjct: 377 RKGDFWVLDVSKIPSIKEQSTPLNSRGLQANMWRRLKAKGYKPNCRSFHRACADHSGRRL 436

Query: 183 YVFGGMVDGLVQPADTSGLRFDGRLLLVEL 212
           YVFGGMVD L+ PA+ S LRFDG L LV+ 
Sbjct: 437 YVFGGMVDSLLHPAEASELRFDGELFLVKF 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522260|ref|XP_003529765.1| PREDICTED: F-box/kelch-repeat protein At1g51550-like [Glycine max]

 Score =  307 bits (787), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 143/212 (67%), Positives = 176/212 (83%), Gaps = 1/212 (0%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL GLRLGDTWVLE+S++ CFG+W ++V HPSPP RSGH+LT IG +RT+LFGGRG+GY
Sbjct: 248 IGLNGLRLGDTWVLEMSDSHCFGTWHEIVAHPSPPPRSGHTLTCIGRSRTILFGGRGLGY 307

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           EVL+DVW LD Y+G+ +WVQI Y+LQ+IPAG SLPRVGH+ATL+LGGR+LIYGGEDS R+
Sbjct: 308 EVLDDVWLLDTYQGYQRWVQIVYDLQSIPAGVSLPRVGHTATLVLGGRLLIYGGEDSYRQ 367

Query: 123 RKDDFWVLDTKAIPFTSV-QQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
           RKDDFWVLD  AIP+  + QQ  + S+ +L  MWKR ++ G+  N RSFHRAC D SGRY
Sbjct: 368 RKDDFWVLDISAIPYPCITQQITVSSKKVLTRMWKRWKSSGHAANSRSFHRACADRSGRY 427

Query: 182 LYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           +YVFGGMVDG +QPA+ SGLRFDG L LV+ +
Sbjct: 428 VYVFGGMVDGFLQPAEPSGLRFDGELFLVDYI 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555596|ref|XP_002518834.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223542007|gb|EEF43552.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 154/214 (71%), Positives = 172/214 (80%), Gaps = 5/214 (2%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL GLRLGDTWVLELSEN CFG+W +LV HPSPP RSGHSLT IG    VLFGGRG+GY
Sbjct: 254 IGLNGLRLGDTWVLELSENLCFGTWHELVIHPSPPPRSGHSLTCIGEPGLVLFGGRGLGY 313

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           EVLNDVW L + +G  KWVQ+ YELQNIP G SLPRVGHSATL LGGRVLIYGGEDS R 
Sbjct: 314 EVLNDVWLLQMSDGQLKWVQMLYELQNIPEGVSLPRVGHSATLTLGGRVLIYGGEDSYRH 373

Query: 123 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYL 182
           RKDDFW+LD  ++  T +  + L +     NMWKRL+A+GYKPN RSFHRAC D+SGRYL
Sbjct: 374 RKDDFWMLDISSMISTQMLPTALRA-----NMWKRLKAKGYKPNRRSFHRACGDHSGRYL 428

Query: 183 YVFGGMVDGLVQPADTSGLRFDGRLLLVELVPLL 216
           YVFGGMVDG++QPA+ SGLRFDG L LVEL  LL
Sbjct: 429 YVFGGMVDGVLQPAEASGLRFDGELFLVELGTLL 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109986|ref|XP_002315377.1| predicted protein [Populus trichocarpa] gi|222864417|gb|EEF01548.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 153/211 (72%), Positives = 173/211 (81%), Gaps = 2/211 (0%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGLYGLR+GDTW+LELSENFC G+W++LVTHPSPPARSGH+LT I G   VLFGGRG GY
Sbjct: 251 IGLYGLRMGDTWILELSENFCSGTWRELVTHPSPPARSGHTLTCIEGTGIVLFGGRGSGY 310

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           +VL+DVW L V E   KW+QI Y LQ+IPAG SLPRVGHSATLILGGR+LIYGGEDS R 
Sbjct: 311 DVLHDVWLLQVSEVELKWIQILYNLQDIPAGVSLPRVGHSATLILGGRLLIYGGEDSQRH 370

Query: 123 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
           RKDDFWVLD   IP ++  QS L+SRGL   NMWK L+A+GYKP  RSFHRAC D+SG  
Sbjct: 371 RKDDFWVLDVSKIP-SNKAQSPLNSRGLQANNMWKMLKAKGYKPYRRSFHRACADHSGCR 429

Query: 182 LYVFGGMVDGLVQPADTSGLRFDGRLLLVEL 212
           LYVFGGMVDGL+QPA+  GLRFDG L LV+L
Sbjct: 430 LYVFGGMVDGLLQPAEAYGLRFDGELFLVKL 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526302|ref|XP_003531757.1| PREDICTED: F-box/kelch-repeat protein At1g51550-like [Glycine max]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 137/214 (64%), Positives = 163/214 (76%), Gaps = 16/214 (7%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL GLRLGDTW              ++V+HPSPP RSGH+LT IG +RT+LFGGRG+GY
Sbjct: 256 IGLNGLRLGDTW-------------HEIVSHPSPPPRSGHTLTCIGRSRTILFGGRGLGY 302

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           EVL+DVW LD Y+G+ KWVQI Y+LQ+IP G SLPRVGH+ATL+LGGR+LIYGGE+S R 
Sbjct: 303 EVLDDVWLLDTYQGYQKWVQIVYDLQSIPDGVSLPRVGHTATLVLGGRLLIYGGENSYRH 362

Query: 123 RKDDFWVLDTKAIPF---TSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSG 179
           RKDDFWVLD  AIP+   +  QQ  + S+ +L  MWKR ++ G+  N RSFHRAC D SG
Sbjct: 363 RKDDFWVLDISAIPYPPCSITQQITVSSKKVLTRMWKRWKSSGHAANSRSFHRACADRSG 422

Query: 180 RYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
            YLYVFGGMVDG +QPA+ SGLRFDG L LVELV
Sbjct: 423 CYLYVFGGMVDGFLQPAEPSGLRFDGELFLVELV 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852882|ref|XP_002894322.1| hypothetical protein ARALYDRAFT_474268 [Arabidopsis lyrata subsp. lyrata] gi|297340164|gb|EFH70581.1| hypothetical protein ARALYDRAFT_474268 [Arabidopsis lyrata subsp. lyrata]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 9/215 (4%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL G+RLGDTW+LELSE+F  G+W  + +  SPP RSGH+LT I  N+ VLFGGRG+GY
Sbjct: 252 IGLNGVRLGDTWILELSEDFTSGTWHMVESQQSPPPRSGHTLTCIRENQVVLFGGRGLGY 311

Query: 63  EVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121
           +VL+DVW LD+ E    KW+QI Y  Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R
Sbjct: 312 DVLDDVWILDIQEQCEEKWIQIFYNFQDVPEHASLPRVGHSATLVLGGRILIYGGEDSYR 371

Query: 122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYS 178
            RKDDFWVLD K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D S
Sbjct: 372 HRKDDFWVLDVKTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACVDCS 426

Query: 179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           GR++YVFGGMVDGL+QPA +SGLRFDG L +VELV
Sbjct: 427 GRFVYVFGGMVDGLLQPAASSGLRFDGELFMVELV 461

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403574|ref|NP_564592.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75169531|sp|Q9C8K7.1|FBK21_ARATH RecName: Full=F-box/kelch-repeat protein At1g51550 gi|12325373|gb|AAG52632.1|AC024261_19 hypothetical protein; 21456-23101 [Arabidopsis thaliana] gi|115646730|gb|ABJ17097.1| At1g51550 [Arabidopsis thaliana] gi|332194561|gb|AEE32682.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

 Score =  262 bits (669), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 9/215 (4%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL G+RLGDTW+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY
Sbjct: 253 IGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGY 312

Query: 63  EVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121
           +VL+DVW LD+ E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R
Sbjct: 313 DVLDDVWILDIQEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYR 372

Query: 122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYS 178
            RKDDFWVLD K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D S
Sbjct: 373 HRKDDFWVLDVKTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCS 427

Query: 179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           GR+LYVFGGMVDGL+QPA +SGLRFDG L +VELV
Sbjct: 428 GRFLYVFGGMVDGLLQPAASSGLRFDGELFMVELV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51968990|dbj|BAD43187.1| unknown protein [Arabidopsis thaliana] gi|51969154|dbj|BAD43269.1| unknown protein [Arabidopsis thaliana]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 136/215 (63%), Positives = 161/215 (74%), Gaps = 9/215 (4%)

Query: 3   IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
           IGL G+RLGDTW+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY
Sbjct: 251 IGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGY 310

Query: 63  EVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121
           +VL+DVW LD+ E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R
Sbjct: 311 DVLDDVWILDIQEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYR 370

Query: 122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLN---MWKRLRAEGYKPNCRSFHRACPDYS 178
            RKDDFWVLD K IP      S L  +GL LN   +WK+L    Y P  RSFHRAC D S
Sbjct: 371 HRKDDFWVLDVKTIP-----SSGLKPQGLSLNGSSVWKKLDRISYGPKSRSFHRACADCS 425

Query: 179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV 213
           GR+LYVFGGMVDGL+QPA +SGLRFDG L +VELV
Sbjct: 426 GRFLYVFGGMVDGLLQPAASSGLRFDGELFMVELV 460

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2033934	478	AT1G51550 "AT1G51550" [Arabido	0.930	0.420	0.622	2.5e-65
CGD|CAL0001573	638	orf19.5009 [Candida albicans (	0.523	0.177	0.359	3e-11
UNIPROTKB|Q5AKW8	638	KEL3 "Putative uncharacterized	0.523	0.177	0.359	3e-11
TAIR|locus:505006254	611	LKP2 "AT2G18915" [Arabidopsis	0.569	0.201	0.315	4.6e-11
TAIR|locus:2200176	619	FKF1 "AT1G68050" [Arabidopsis	0.523	0.182	0.352	2.1e-09
TAIR|locus:2172994	626	ZTL "AT5G57360" [Arabidopsis t	0.518	0.178	0.333	2.3e-07
DICTYBASE|DDB_G0268860	943	rngB "Kelch repeat-containing	0.430	0.098	0.372	1e-06
GENEDB_PFALCIPARUM|PF14_0630	889	PF14_0630 "protein serine/thre	0.532	0.129	0.315	1.3e-06
UNIPROTKB|Q8IKH5	889	PF14_0630 "Serine/threonine-pr	0.532	0.129	0.315	1.3e-06
MGI|MGI:2384569	584	Klhdc4 "kelch domain containin	0.726	0.268	0.290	6.9e-06

TAIR|locus:2033934 AT1G51550 "AT1G51550" [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 127/204 (62%), Positives = 154/204 (75%)

Query:     3 IGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY 62
             IGL G+RLGDTW+LELSE+F  G+W  + +   PP RSGH+LT I  N+ VLFGGRG+GY
Sbjct:   253 IGLNGVRLGDTWILELSEDFSSGTWHMVESPQLPPPRSGHTLTCIRENQVVLFGGRGLGY 312

Query:    63 EVLNDVWFLDVYEGFF-KWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR 121
             +VL+DVW LD+ E    KW+QI Y+ Q++P   SLPRVGHSATL+LGGR+LIYGGEDS R
Sbjct:   313 DVLDDVWILDIQEPCEEKWIQIFYDFQDVPEYASLPRVGHSATLVLGGRILIYGGEDSYR 372

Query:   122 RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRY 181
              RKDDFWVLD K IP + ++   L   G   ++WK+L    Y P  RSFHRAC D SGR+
Sbjct:   373 HRKDDFWVLDVKTIPSSGLKPQGLSLNGS--SVWKKLDRISYGPKSRSFHRACADCSGRF 430

Query:   182 LYVFGGMVDGLVQPADTSGLRFDG 205
             LYVFGGMVDGL+QPA +SGLRFDG
Sbjct:   431 LYVFGGMVDGLLQPAASSGLRFDG 454

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

CGD|CAL0001573 orf19.5009 [Candida albicans (taxid:5476)]

 Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 50/139 (35%), Positives = 66/139 (47%)

Query:    11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG-RGVGYEV--LND 67
             GDTW+L+         WQ++ +   P ARSGH L  +  N  +L GG R +G     LND
Sbjct:   167 GDTWILDADTK----EWQKIDSKKGPSARSGHRLA-VWKNYIILHGGFRDLGTMTTYLND 221

Query:    68 VWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSARRRK- 124
             VW  DV E  FKW Q+ +     P    +P  R GHS      G V IYGG    + +K 
Sbjct:   222 VWLFDVTE--FKWTQVEF-----PPNHPIPDARSGHSLLPCSEGAV-IYGGYTKIKAKKG 273

Query:   125 -------DDFWVLDTKAIP 136
                    +D W+L  K+ P
Sbjct:   274 LQKGKVLNDCWILKMKSDP 292

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AKW8 KEL3 "Putative uncharacterized protein KEL3" [Candida albicans SC5314 (taxid:237561)]

 Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 50/139 (35%), Positives = 66/139 (47%)

Query:    11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG-RGVGYEV--LND 67
             GDTW+L+         WQ++ +   P ARSGH L  +  N  +L GG R +G     LND
Sbjct:   167 GDTWILDADTK----EWQKIDSKKGPSARSGHRLA-VWKNYIILHGGFRDLGTMTTYLND 221

Query:    68 VWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSARRRK- 124
             VW  DV E  FKW Q+ +     P    +P  R GHS      G V IYGG    + +K 
Sbjct:   222 VWLFDVTE--FKWTQVEF-----PPNHPIPDARSGHSLLPCSEGAV-IYGGYTKIKAKKG 273

Query:   125 -------DDFWVLDTKAIP 136
                    +D W+L  K+ P
Sbjct:   274 LQKGKVLNDCWILKMKSDP 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006254 LKP2 "AT2G18915" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 41/130 (31%), Positives = 69/130 (53%)

Query:     7 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGG---RGVGYE 63
             G  L DT++L+LS +    +W+++    +PP+R GH+LT  G  + ++FGG    G    
Sbjct:   421 GALLSDTFLLDLSMDI--PAWREIPVPWTPPSRLGHTLTVYGDRKILMFGGLAKNGTLRF 478

Query:    64 VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLILGGRVLIYGGEDSAR 121
               NDV+ +D+ E    W  +     ++P G + P  R+ H A  + GGR+LI+GG  +  
Sbjct:   479 RSNDVYTMDLSEDEPSWRPVIGYGSSLPGGMAAPPPRLDHVAISLPGGRILIFGGSVAGL 538

Query:   122 RRKDDFWVLD 131
                   ++LD
Sbjct:   539 DSASQLYLLD 548

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007623 "circadian rhythm" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0015030 "Cajal body" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0048574 "long-day photoperiodism, flowering" evidence=RCA

TAIR|locus:2200176 FKF1 "AT1G68050" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 43/122 (35%), Positives = 63/122 (51%)

Query:    10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
             L DT+VL L    C   WQ++    SPP R GH+L+ + G+  V+FGG G    +LNDV+
Sbjct:   330 LDDTFVLNLDAE-C-PEWQRVRVTSSPPGRWGHTLSCLNGSWLVVFGGCG-RQGLLNDVF 386

Query:    70 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV 129
              LD+      W ++       P    LPR  HS+  I G ++++ GG   A     D ++
Sbjct:   387 VLDLDAKHPTWKEVA---GGTPP---LPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTFL 440

Query:   130 LD 131
             LD
Sbjct:   441 LD 442

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0007623 "circadian rhythm" evidence=ISS;IDA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=IDA

GO:0001047 "core promoter binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2172994 ZTL "AT5G57360" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 41/123 (33%), Positives = 65/123 (52%)

Query:    10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
             + DT+VL+L+ ++    WQ +     PP R GH+LT + G+  V+FGG G    +LNDV+
Sbjct:   318 MNDTFVLDLNSDY--PEWQHVKVSSPPPGRWGHTLTCVNGSNLVVFGGCGQ-QGLLNDVF 374

Query:    70 FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGG-EDSARRRKDDFW 128
              L++      W     E+  +     LPR  HS+  + G ++++ GG  DS     D F 
Sbjct:   375 VLNLDAKPPTW----REISGLAP--PLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTF- 427

Query:   129 VLD 131
             +LD
Sbjct:   428 LLD 430

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007623 "circadian rhythm" evidence=ISS;IMP;TAS

GO:0043153 "entrainment of circadian clock by photoperiod" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010498 "proteasomal protein catabolic process" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0010114 "response to red light" evidence=IMP

GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP

GO:0009882 "blue light photoreceptor activity" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009639 "response to red or far red light" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0044265 "cellular macromolecule catabolic process" evidence=RCA

DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 38/102 (37%), Positives = 50/102 (49%)

Query:    27 WQQLVTHPSPPA-RSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGF--FKWVQI 83
             W+++    +PP  RSGHS T I  N+ ++FGG G     LND+  L + EG   ++W Q 
Sbjct:   218 WKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGSDSNFLNDIHILHI-EGANEYRWEQP 276

Query:    84 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKD 125
              Y    IP      R  H+   I GGRV IY G  S     D
Sbjct:   277 SYLGLEIPQA----RFRHTTNFI-GGRVYIYAGTGSGNLMGD 313

GO:0005737 "cytoplasm" evidence=IEA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0630 PF14_0630 "protein serine/threonine phosphatase" [Plasmodium falciparum (taxid:5833)]

 Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 41/130 (31%), Positives = 63/130 (48%)

Query:     8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARS-GHSLTRIGGNRTVLFGGRGVGYEVLN 66
             L L D ++L+L +   + +W  + T    P R  GH +     N  ++FGG   G   LN
Sbjct:   104 LSLDDLYILDLRKEQKY-TWMTVPTKGVTPGRRYGHVMVYSKPN-LIVFGGND-GQNTLN 160

Query:    67 DVWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLI----LGGRVLIYGGEDSA 120
             DVW++ V    F+WV++      IP    +P  RV HSA +       G ++I+GG  + 
Sbjct:   161 DVWYMHVEMPPFEWVRVI-----IPNTCKVPPQRVYHSADMCKEGPASGMIVIFGGRSAE 215

Query:   121 RRRKDDFWVL 130
              +  DD W L
Sbjct:   216 NKSLDDTWGL 225

GO:0008287 "protein serine/threonine phosphatase complex" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

UNIPROTKB|Q8IKH5 PF14_0630 "Serine/threonine-protein phosphatase" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 41/130 (31%), Positives = 63/130 (48%)

Query:     8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARS-GHSLTRIGGNRTVLFGGRGVGYEVLN 66
             L L D ++L+L +   + +W  + T    P R  GH +     N  ++FGG   G   LN
Sbjct:   104 LSLDDLYILDLRKEQKY-TWMTVPTKGVTPGRRYGHVMVYSKPN-LIVFGGND-GQNTLN 160

Query:    67 DVWFLDVYEGFFKWVQIPYELQNIPAGFSLP--RVGHSATLI----LGGRVLIYGGEDSA 120
             DVW++ V    F+WV++      IP    +P  RV HSA +       G ++I+GG  + 
Sbjct:   161 DVWYMHVEMPPFEWVRVI-----IPNTCKVPPQRVYHSADMCKEGPASGMIVIFGGRSAE 215

Query:   121 RRRKDDFWVL 130
              +  DD W L
Sbjct:   216 NKSLDDTWGL 225

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0008287 "protein serine/threonine phosphatase complex" evidence=TAS

MGI|MGI:2384569 Klhdc4 "kelch domain containing 4" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 54/186 (29%), Positives = 81/186 (43%)

Query:    12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLND-VWF 70
             D WVL L+      +W+Q+ +   P  RSGH +      + +LFGG    +E   D +++
Sbjct:   154 DLWVLHLATK----TWEQIRSTGGPSGRSGHRMVA-WKRQLILFGGF---HESARDYIYY 205

Query:    71 LDVYE---GFFKWVQIPYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDD 126
              DVY      F+W ++       P+G    PR G    +   G + IYGG    R +KD 
Sbjct:   206 SDVYTFSLDTFQWSKLS------PSGAGPTPRSGCLMAVTPQGSIAIYGGYSKQRVKKD- 258

Query:   127 FWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRS-FHRA-CPDYSGRYLYV 184
                +D K    + +        G     W R+   G KP  RS F  A  P++    + V
Sbjct:   259 ---VD-KGTQHSDMFLLKPAEGGEGKWAWTRINPSGVKPTARSGFSVAVAPNHQ---ILV 311

Query:   185 FGGMVD 190
             FGG+ D
Sbjct:   312 FGGVCD 317

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029589001 SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (473 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-06
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	2e-05
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.001

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84
           R+ H+ T IG  R  LFGG      VL+DVW  D+      W ++P
Sbjct: 1  PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTN--TWTRLP 45

Length = 49

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 97  PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK 133
           PR  H++T I  GR+ ++GGE+       D WV D  
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLS 37

Length = 49

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 35.3 bits (82), Expect = 0.001
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 49  GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLI 106
           G +  +FGG G G   LND+W  D+      W ++     ++P     PR GH+AT+I
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTN--TWEKLG----DLPG----PRAGHAATVI 48

Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.96
KOG1230	521	consensus Protein containing repeated kelch motifs	99.95
PLN02193	470	nitrile-specifier protein	99.95
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.95
PLN02153	341	epithiospecifier protein	99.95
PLN02193	470	nitrile-specifier protein	99.92
PHA03098	534	kelch-like protein; Provisional	99.92
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.91
PHA02713	557	hypothetical protein; Provisional	99.91
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.91
PHA02790	480	Kelch-like protein; Provisional	99.91
PLN02153	341	epithiospecifier protein	99.9
PHA02713	557	hypothetical protein; Provisional	99.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.88
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.88
KOG1230	521	consensus Protein containing repeated kelch motifs	99.88
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.87
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.86
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.85
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.83
PHA03098	534	kelch-like protein; Provisional	99.83
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.81
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.79
PHA02790	480	Kelch-like protein; Provisional	99.67
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.5
PF13964	50	Kelch_6: Kelch motif	99.35
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.3
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.22
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.21
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.2
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.19
PLN02772	398	guanylate kinase	99.1
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.07
PF13964	50	Kelch_6: Kelch motif	99.06
PLN02772	398	guanylate kinase	99.04
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.03
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.03
PF13854	42	Kelch_5: Kelch motif	98.98
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.97
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.94
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.9
PF13854	42	Kelch_5: Kelch motif	98.83
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.75
smart00612	47	Kelch Kelch domain.	98.59
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.46
smart00612	47	Kelch Kelch domain.	98.13
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.41
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.38
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	96.17
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.77
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	93.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.33
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	85.28
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	84.92
PF15525	200	DUF4652: Domain of unknown function (DUF4652)	82.28
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	81.42
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	80.43

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.96  E-value=4.4e-29  Score=192.90  Aligned_cols=194  Identities=24%  Similarity=0.337  Sum_probs=161.7

Q ss_pred             cccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCC-CceeCcEEEEecCCCCccEEEecc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVG-YEVLNDVWFLDVYEGFFKWVQIPY   85 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~d~~~~~~~W~~~~~   85 (216)
                      ..+|-+++||++++    +|.++. .+-.|.+|.+|++|++ ++.+|||||+.+. .++.++++.+|+.|  .+|+.+. 
T Consensus       102 gaCN~Ly~fDp~t~----~W~~p~v~G~vPgaRDGHsAcV~-gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~-  173 (392)
T KOG4693|consen  102 GACNLLYEFDPETN----VWKKPEVEGFVPGARDGHSACVW-GNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMH-  173 (392)
T ss_pred             cccceeeeeccccc----cccccceeeecCCccCCceeeEE-CcEEEEecChHHHHHhhhccceeEeccc--eeeeehh-
Confidence            45789999999998    999988 7889999999999999 4799999999543 46788999999999  9999997 


Q ss_pred             CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--------CCCCCceEEEecCCCCcccccc----c----------
Q 027962           86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDFWVLDTKAIPFTSVQQ----S----------  143 (216)
Q Consensus        86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~----~----------  143 (216)
                          +.+++|.-|..|++.+ .++.+|||||+...        ..+++.+..+|+.+..|...++    +          
T Consensus       174 ----Tkg~PprwRDFH~a~~-~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv  248 (392)
T KOG4693|consen  174 ----TKGDPPRWRDFHTASV-IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV  248 (392)
T ss_pred             ----ccCCCchhhhhhhhhh-ccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE
Confidence                7788999999999999 88999999998643        3467788899999999974332    1          


Q ss_pred             --------------------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCC------CCC-C-
Q 027962          144 --------------------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDG------LVQ-P-  195 (216)
Q Consensus       144 --------------------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~------~~~-~-  195 (216)
                                          ++.++||++..|..+...|..|.+|..|.+++  .++++|+|||...-      ..+ . 
T Consensus       249 Yng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v--~g~kv~LFGGTsP~~~~~~Spt~~~G  326 (392)
T KOG4693|consen  249 YNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVV--SGGKVYLFGGTSPLPCHPLSPTNYNG  326 (392)
T ss_pred             EcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEE--ECCEEEEecCCCCCCCCCCCccccCC
Confidence                                19999999999999999999999998887777  69999999999651      111 1 


Q ss_pred             -CCCcccccccceeEeeccccC
Q 027962          196 -ADTSGLRFDGRLLLVELVPLL  216 (216)
Q Consensus       196 -~~~~~~~~~~d~~~~~~~~~~  216 (216)
                       .+..++....|++.+|++|.|
T Consensus       327 ~~~~~~LiD~SDLHvLDF~PsL  348 (392)
T KOG4693|consen  327 MISPSGLIDLSDLHVLDFAPSL  348 (392)
T ss_pred             CCCcccccccccceeeecChhH
Confidence             134455577899999999865

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.95  E-value=2e-27  Score=192.97  Aligned_cols=190  Identities=24%  Similarity=0.408  Sum_probs=156.6

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCC--CCC---ceeCcEEEEecCCCCccEEEec
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG--VGY---EVLNDVWFLDVYEGFFKWVQIP   84 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~--~~~---~~~~~~~~~d~~~~~~~W~~~~   84 (216)
                      .||+|.|+++++    .|+++.....|+||++|.++++..|.+++|||--  .++   --+.|+|+||+.+  ++|+++ 
T Consensus        97 YndLy~Yn~k~~----eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t--rkweql-  169 (521)
T KOG1230|consen   97 YNDLYSYNTKKN----EWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKT--RKWEQL-  169 (521)
T ss_pred             eeeeeEEecccc----ceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeecc--chheee-
Confidence            699999999998    9999998889999999999999768999999962  111   1378999999999  999999 


Q ss_pred             cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC---CCCCCceEEEecCCCCccccccc------------------
Q 027962           85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA---RRRKDDFWVLDTKAIPFTSVQQS------------------  143 (216)
Q Consensus        85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------  143 (216)
                           ..+..|.+|.+|-+++ ...+|++|||+.+.   -.++||||+||+++.+|+..-++                  
T Consensus       170 -----~~~g~PS~RSGHRMva-wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg  243 (521)
T KOG1230|consen  170 -----EFGGGPSPRSGHRMVA-WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG  243 (521)
T ss_pred             -----ccCCCCCCCccceeEE-eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence                 4455899999999999 99999999998543   24789999999999999833211                  


Q ss_pred             ------------------------cccccCccc-----CCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCC
Q 027962          144 ------------------------MLDSRGLLL-----NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQ  194 (216)
Q Consensus       144 ------------------------~~~~~~~~~-----~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~  194 (216)
                                              +|+..++..     ..|+++...|..|.||++.+.++. .+++-+.|||..+-...
T Consensus       244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va-~n~kal~FGGV~D~eee  322 (521)
T KOG1230|consen  244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA-KNHKALFFGGVCDLEEE  322 (521)
T ss_pred             cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe-cCCceEEecceeccccc
Confidence                                    067777777     999999999999999999888886 56689999999764433


Q ss_pred             CCCCcccccccceeEeeccc
Q 027962          195 PADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       195 ~~~~~~~~~~~d~~~~~~~~  214 (216)
                      ..+..+. |.||||.||+..
T Consensus       323 eEsl~g~-F~NDLy~fdlt~  341 (521)
T KOG1230|consen  323 EESLSGE-FFNDLYFFDLTR  341 (521)
T ss_pred             chhhhhh-hhhhhhheeccc
Confidence            4444444 999999999873

>PLN02193 nitrile-specifier protein

Probab=99.95  E-value=3.9e-26  Score=197.31  Aligned_cols=186  Identities=18%  Similarity=0.290  Sum_probs=146.1

Q ss_pred             cccEEEEeccCCccccceEEcc-cCCCCC-CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962           10 LGDTWVLELSENFCFGSWQQLV-THPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~-~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      .+++|+||++++    +|+.++ .+++|. +|.+|+++.+ +++||||||.. ....++++|+||+.+  ++|+++.   
T Consensus       192 ~~~v~~yD~~~~----~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~-~~~~~ndv~~yD~~t--~~W~~l~---  260 (470)
T PLN02193        192 DKHLYVFDLETR----TWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRD-ASRQYNGFYSFDTTT--NEWKLLT---  260 (470)
T ss_pred             eCcEEEEECCCC----EEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCC-CCCCCccEEEEECCC--CEEEEcC---
Confidence            578999999997    999876 334444 4678999999 58999999985 345689999999999  9999984   


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-------------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-------------------------  142 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  142 (216)
                        ..+..|.+|++|++++ .+++||+|||++. ...++++++||+.+.+|...+.                         
T Consensus       261 --~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG  336 (470)
T PLN02193        261 --PVEEGPTPRSFHSMAA-DEENVYVFGGVSA-TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG  336 (470)
T ss_pred             --cCCCCCCCccceEEEE-ECCEEEEECCCCC-CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence              2223488999999988 8999999999975 3467899999999999974321                         


Q ss_pred             ------ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          143 ------SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       143 ------~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                            ..+.+||+.+++|+++...+..|.+|..|++++  .+++||||||............+ .+.+|+|.||+.
T Consensus       337 ~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~-~~~ndv~~~D~~  410 (470)
T PLN02193        337 FNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPG-QLTDGTFALDTE  410 (470)
T ss_pred             CCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCcc-ceeccEEEEEcC
Confidence                  126789999999999988777789999998887  58899999998543211111111 256799999986

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.95  E-value=1.5e-26  Score=199.83  Aligned_cols=161  Identities=31%  Similarity=0.573  Sum_probs=143.2

Q ss_pred             cEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCC
Q 027962           12 DTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI   90 (216)
Q Consensus        12 ~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~   90 (216)
                      |+|.+|..+.    .|.+.. ++..|.+|++|+++++ +++||+|||........++++.||+.|  ++|+.+.     .
T Consensus        89 dl~~~d~~~~----~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~~~l~~~d~~t--~~W~~l~-----~  156 (482)
T KOG0379|consen   89 DLYVLDLESQ----LWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGTDKKYRNLNELHSLDLST--RTWSLLS-----P  156 (482)
T ss_pred             eeEEeecCCc----ccccccccCCCCCcccceeEEEE-CCeEEEEccccCCCCChhheEeccCCC--CcEEEec-----C
Confidence            5999999996    998887 7888999999999999 589999999965566689999999999  9999986     6


Q ss_pred             CCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcc
Q 027962           91 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSF  170 (216)
Q Consensus        91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~  170 (216)
                      .+++|.+|.+|++++ .+.+||||||.+......+++|+||++                  +.+|.++...|..|.||.+
T Consensus       157 ~~~~P~~r~~Hs~~~-~g~~l~vfGG~~~~~~~~ndl~i~d~~------------------~~~W~~~~~~g~~P~pR~g  217 (482)
T KOG0379|consen  157 TGDPPPPRAGHSATV-VGTKLVVFGGIGGTGDSLNDLHIYDLE------------------TSTWSELDTQGEAPSPRYG  217 (482)
T ss_pred             cCCCCCCcccceEEE-ECCEEEEECCccCcccceeeeeeeccc------------------cccceecccCCCCCCCCCC
Confidence            677899999999999 889999999998776689999999999                  7789999999999999999


Q ss_pred             eeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          171 HRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       171 h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      |++++  .+++++||||.....         .+.+|+|.||++.
T Consensus       218 H~~~~--~~~~~~v~gG~~~~~---------~~l~D~~~ldl~~  250 (482)
T KOG0379|consen  218 HAMVV--VGNKLLVFGGGDDGD---------VYLNDVHILDLST  250 (482)
T ss_pred             ceEEE--ECCeEEEEeccccCC---------ceecceEeeeccc
Confidence            99999  588899998886332         2789999999874

>PLN02153 epithiospecifier protein

Probab=99.95  E-value=8.5e-26  Score=188.12  Aligned_cols=189  Identities=17%  Similarity=0.286  Sum_probs=140.9

Q ss_pred             cccEEEEeccCCccccceEEccc-CCCCC-CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962           10 LGDTWVLELSENFCFGSWQQLVT-HPSPP-ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~-~~~p~-~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      .+++|+||+.++    +|++++. +..|. .+.+|+++++ +++||+|||.. ....++++++||+.+  ++|+.+.  .
T Consensus        49 ~~~~~~yd~~~~----~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~t--~~W~~~~--~  118 (341)
T PLN02153         49 DKDLYVFDFNTH----TWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRD-EKREFSDFYSYDTVK--NEWTFLT--K  118 (341)
T ss_pred             eCcEEEEECCCC----EEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCC-CCCccCcEEEEECCC--CEEEEec--c
Confidence            689999999997    9998762 22222 2457899999 58999999985 344578999999999  9999883  0


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC-----CCCCceEEEecCCCCcccccc--------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-----RRKDDFWVLDTKAIPFTSVQQ--------------------  142 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------------  142 (216)
                      + .....|.+|.+|++++ .+++||||||++...     ..++++++||+++++|...+.                    
T Consensus       119 ~-~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~i  196 (341)
T PLN02153        119 L-DEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKI  196 (341)
T ss_pred             C-CCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeE
Confidence            0 0112388999999988 999999999986432     235789999999999974321                    


Q ss_pred             --------------------ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccc
Q 027962          143 --------------------SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLR  202 (216)
Q Consensus       143 --------------------~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~  202 (216)
                                          ..+.+||+.+++|+++...+..|.+|..|++++  .+++||||||............ ..
T Consensus       197 yv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~-~~  273 (341)
T PLN02153        197 WVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGP-GT  273 (341)
T ss_pred             EEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCcccccccc-cc
Confidence                                015669999999999988777789999999888  5899999999843221111111 22


Q ss_pred             cccceeEeecc
Q 027962          203 FDGRLLLVELV  213 (216)
Q Consensus       203 ~~~d~~~~~~~  213 (216)
                      +.+|+|+||+.
T Consensus       274 ~~n~v~~~d~~  284 (341)
T PLN02153        274 LSNEGYALDTE  284 (341)
T ss_pred             ccccEEEEEcC
Confidence            56799999975

>PLN02193 nitrile-specifier protein

Probab=99.92  E-value=9.2e-24  Score=182.55  Aligned_cols=181  Identities=19%  Similarity=0.257  Sum_probs=142.4

Q ss_pred             ccccEEEEeccCCccccceEEccc-CCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVT-HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~-~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      .++++|+||++++    +|+++.. +..|.||+.|+++.+ +++||||||.+ ....+++++.||+.+  ++|+++.   
T Consensus       242 ~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~-~~~~~~~~~~yd~~t--~~W~~~~---  310 (470)
T PLN02193        242 QYNGFYSFDTTTN----EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVS-ATARLKTLDSYNIVD--KKWFHCS---  310 (470)
T ss_pred             CCccEEEEECCCC----EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCC-CCCCcceEEEEECCC--CEEEeCC---
Confidence            4799999999997    9999862 334889999999999 58999999995 345578999999999  9999985   


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc------c------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ------S------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------  143 (216)
                        ....+|.+|.+|++++ .+++||++||.+.  ...+++++||+.+++|+....      +                  
T Consensus       311 --~~~~~~~~R~~~~~~~-~~gkiyviGG~~g--~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG  385 (470)
T PLN02193        311 --TPGDSFSIRGGAGLEV-VQGKVWVVYGFNG--CEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG  385 (470)
T ss_pred             --CCCCCCCCCCCcEEEE-ECCcEEEEECCCC--CccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence              3345788999999988 8899999999863  347999999999999974321      0                  


Q ss_pred             -----------------cccccCcccCCceEeecCC---CCCCCCcceeEE--EecCCCEEEEEccccCCCCCCCCCccc
Q 027962          144 -----------------MLDSRGLLLNMWKRLRAEG---YKPNCRSFHRAC--PDYSGRYLYVFGGMVDGLVQPADTSGL  201 (216)
Q Consensus       144 -----------------~~~~~~~~~~~W~~~~~~~---~~~~~r~~h~~~--~~~~~~~l~i~GG~~~~~~~~~~~~~~  201 (216)
                                       .+.+||+.+++|+++...+   ..|.+|..|+++  ....++.|+||||..+...        
T Consensus       386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~--------  457 (470)
T PLN02193        386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND--------  457 (470)
T ss_pred             ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc--------
Confidence                             1678999999999998654   357788767543  2223456999999964421        


Q ss_pred             ccccceeEeeccc
Q 027962          202 RFDGRLLLVELVP  214 (216)
Q Consensus       202 ~~~~d~~~~~~~~  214 (216)
                       ..+|+|+|+++.
T Consensus       458 -~~~D~~~~~~~~  469 (470)
T PLN02193        458 -RFDDLFFYGIDS  469 (470)
T ss_pred             -cccceEEEecCC
Confidence             568999999875

>PHA03098 kelch-like protein; Provisional

Probab=99.92  E-value=6.3e-24  Score=186.61  Aligned_cols=171  Identities=16%  Similarity=0.203  Sum_probs=142.3

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      ..+++++||+.++    +|.++  .++|.+|.+|+++.+ +++||++||.. .....+++++||+.+  ++|+.+     
T Consensus       309 ~~~~v~~yd~~~~----~W~~~--~~~~~~R~~~~~~~~-~~~lyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~-----  373 (534)
T PHA03098        309 SVNSVVSYDTKTK----SWNKV--PELIYPRKNPGVTVF-NNRIYVIGGIY-NSISLNTVESWKPGE--SKWREE-----  373 (534)
T ss_pred             eeccEEEEeCCCC----eeeEC--CCCCcccccceEEEE-CCEEEEEeCCC-CCEecceEEEEcCCC--CceeeC-----
Confidence            4679999999997    99987  467889999999999 58999999995 456688999999999  999998     


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c------------------------
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S------------------------  143 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------  143 (216)
                         .++|.+|.+|+++. .+++||++||........+++++||+.+++|...++ +                        
T Consensus       374 ---~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        374 ---PPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             ---CCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence               78999999999988 899999999986555567899999999999974331 1                        


Q ss_pred             -------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 -------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 -------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                             .+.+||+.+++|+.+...   +.+|.+|++++  .+++|||+||.....          +.++++.||..
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~v~~yd~~  511 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI--FNNKIYVVGGDKYEY----------YINEIEVYDDK  511 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCC---CcccccceEEE--ECCEEEEEcCCcCCc----------ccceeEEEeCC
Confidence                   067899999999998754   67888888877  488999999985432          34677778765

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.92  E-value=4.4e-24  Score=184.53  Aligned_cols=149  Identities=35%  Similarity=0.598  Sum_probs=135.2

Q ss_pred             cccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962           10 LGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      +++++.||+.++    +|+.+. .+.+|++|++|++++++ +++|||||.+......|++|.||+.+  .+|.++.    
T Consensus       138 ~~~l~~~d~~t~----~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~--~~W~~~~----  206 (482)
T KOG0379|consen  138 LNELHSLDLSTR----TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLET--STWSELD----  206 (482)
T ss_pred             hhheEeccCCCC----cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeecccc--ccceecc----
Confidence            789999999997    999988 66789999999999995 89999999976666899999999999  9999996    


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCC
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR  168 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r  168 (216)
                       ..+..|.||++|++++ .++++++|||.+..+.+++|++++|+.                  +.+|.++...+..|.+|
T Consensus       207 -~~g~~P~pR~gH~~~~-~~~~~~v~gG~~~~~~~l~D~~~ldl~------------------~~~W~~~~~~g~~p~~R  266 (482)
T KOG0379|consen  207 -TQGEAPSPRYGHAMVV-VGNKLLVFGGGDDGDVYLNDVHILDLS------------------TWEWKLLPTGGDLPSPR  266 (482)
T ss_pred             -cCCCCCCCCCCceEEE-ECCeEEEEeccccCCceecceEeeecc------------------cceeeeccccCCCCCCc
Confidence             6788999999999999 999999999987667889999999999                  77999999999999999


Q ss_pred             cceeEEEecCCCEEEEEccccCC
Q 027962          169 SFHRACPDYSGRYLYVFGGMVDG  191 (216)
Q Consensus       169 ~~h~~~~~~~~~~l~i~GG~~~~  191 (216)
                      +.|..++  .+.+++|+||....
T Consensus       267 ~~h~~~~--~~~~~~l~gG~~~~  287 (482)
T KOG0379|consen  267 SGHSLTV--SGDHLLLFGGGTDP  287 (482)
T ss_pred             ceeeeEE--ECCEEEEEcCCccc
Confidence            9999996  78999999998654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=184.19  Aligned_cols=159  Identities=20%  Similarity=0.310  Sum_probs=141.4

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++.+.+||++++    +|..+  .++|.+|.+++++++ +++||++||++.....++++|+||+.+  ++|+.+    
T Consensus       298 ~~~~~ve~yd~~~~----~w~~~--a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~--~~W~~~----  364 (571)
T KOG4441|consen  298 QSLRSVECYDPKTN----EWSSL--APMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT--NQWTPV----  364 (571)
T ss_pred             cccceeEEecCCcC----cEeec--CCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC--Cceecc----
Confidence            44789999999997    99998  578999999999999 589999999964566789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc-cc-----------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ-QS-----------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------  143 (216)
                          ++|+.+|.+++.+. .++.||+.||++. ...++.+++||+.+++|..+. ++                       
T Consensus       365 ----a~M~~~R~~~~v~~-l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  365 ----APMNTKRSDFGVAV-LDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             ----CCccCccccceeEE-ECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence                89999999999999 9999999999985 567899999999999998554 21                       


Q ss_pred             ------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962          144 ------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  190 (216)
Q Consensus       144 ------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~  190 (216)
                            .+.+|||.+++|+.++++   +.+|.+|++++  .+++||++||...
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~--~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAV--LNGKIYVVGGFDG  486 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCc---ccccccceEEE--ECCEEEEECCccC
Confidence                  189999999999999887   78999999888  6999999999965

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.91  E-value=1.2e-23  Score=184.67  Aligned_cols=158  Identities=24%  Similarity=0.366  Sum_probs=139.8

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++++|+||++++    +|.++  .+++.+|.+++++++ ++.||++||++ ....++++++||+.+  ++|+.+    
T Consensus       346 ~~l~~ve~YD~~~~----~W~~~--a~M~~~R~~~~v~~l-~g~iYavGG~d-g~~~l~svE~YDp~~--~~W~~v----  411 (571)
T KOG4441|consen  346 DRLSSVERYDPRTN----QWTPV--APMNTKRSDFGVAVL-DGKLYAVGGFD-GEKSLNSVECYDPVT--NKWTPV----  411 (571)
T ss_pred             cccceEEEecCCCC----ceecc--CCccCccccceeEEE-CCEEEEEeccc-cccccccEEEecCCC--Cccccc----
Confidence            45899999999998    99997  579999999999999 68999999996 677899999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-----------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-----------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------  143 (216)
                          ++|+.+|.+|++++ .+++||++||.+.....++.+++||+.+++|...++ +                       
T Consensus       412 ----a~m~~~r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  412 ----APMLTRRSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDG  486 (571)
T ss_pred             ----CCCCcceeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccC
Confidence                88999999999999 999999999998765589999999999999985442 1                       


Q ss_pred             -----cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEcccc
Q 027962          144 -----MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       144 -----~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                           .+-+|||.+++|..+..+   ..+|..+++++  .++++|++||..
T Consensus       487 ~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~--~~~~ly~vGG~~  532 (571)
T KOG4441|consen  487 TSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVV--LGGKLYAVGGFD  532 (571)
T ss_pred             CCccceEEEEcCCCCceeEcccC---ccccccccEEE--ECCEEEEEeccc
Confidence                 077899999999999765   67888787877  599999999974

>PHA02713 hypothetical protein; Provisional

Probab=99.91  E-value=2.5e-23  Score=182.93  Aligned_cols=158  Identities=14%  Similarity=0.183  Sum_probs=133.9

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      .++++++||++++    .|..+  .++|.+|.+|+++++ +++||++||.. .....+++++||+.+  ++|+.+     
T Consensus       318 ~~~~v~~Yd~~~n----~W~~~--~~m~~~R~~~~~~~~-~g~IYviGG~~-~~~~~~sve~Ydp~~--~~W~~~-----  382 (557)
T PHA02713        318 SLNKVYKINIENK----IHVEL--PPMIKNRCRFSLAVI-DDTIYAIGGQN-GTNVERTIECYTMGD--DKWKML-----  382 (557)
T ss_pred             ccceEEEEECCCC----eEeeC--CCCcchhhceeEEEE-CCEEEEECCcC-CCCCCceEEEEECCC--CeEEEC-----
Confidence            4789999999998    99987  578999999999999 58999999985 344578899999999  999999     


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC-----------------CCCCceEEEecCCCCccccccc--------
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-----------------RRKDDFWVLDTKAIPFTSVQQS--------  143 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~--------  143 (216)
                         .++|.+|.++++++ .+++||++||.+...                 ...+.+++||+.+++|+..++.        
T Consensus       383 ---~~mp~~r~~~~~~~-~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        383 ---PDMPIALSSYGMCV-LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             ---CCCCcccccccEEE-ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence               78999999999888 899999999986421                 1257899999999999844421        


Q ss_pred             ----------------------cccccCccc-CCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962          144 ----------------------MLDSRGLLL-NMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  190 (216)
Q Consensus       144 ----------------------~~~~~~~~~-~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~  190 (216)
                                            .+.+|||.+ ++|+.+.++   |.+|..+++++  .+++||++||+..
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~--~~~~iyv~Gg~~~  523 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESRLSALHTIL--HDNTIMMLHCYES  523 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc---CcccccceeEE--ECCEEEEEeeecc
Confidence                                  056899999 899999765   78999888888  5999999999853

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.91  E-value=1e-23  Score=163.29  Aligned_cols=180  Identities=23%  Similarity=0.368  Sum_probs=148.2

Q ss_pred             cEEEEeccCCccccceEEccc-----------CCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccE
Q 027962           12 DTWVLELSENFCFGSWQQLVT-----------HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW   80 (216)
Q Consensus        12 ~~~~~d~~~~~~~~~W~~~~~-----------~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W   80 (216)
                      |+.+|+..+    .+|.+++.           .-.|.-|++|+++.+ ++++|++||++.....-|-++.||+++  ++|
T Consensus        45 DVH~lNa~~----~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W  117 (392)
T KOG4693|consen   45 DVHVLNAEN----YRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPET--NVW  117 (392)
T ss_pred             eeEEeeccc----eeEEecCcccccccccCCCCccchhhcCceEEEE-cceEEEEcCccCcccccceeeeecccc--ccc
Confidence            778888888    49998863           124667999999999 689999999976677789999999999  999


Q ss_pred             EEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC-CCCCCceEEEecCCCCcccccc----c------------
Q 027962           81 VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA-RRRKDDFWVLDTKAIPFTSVQQ----S------------  143 (216)
Q Consensus        81 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~~~~~~~~~----~------------  143 (216)
                      ....     ..+..|.+|.+|++++ .+..+|||||+.+. ..+.+|+..+|+.+.+|.-...    +            
T Consensus       118 ~~p~-----v~G~vPgaRDGHsAcV-~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~  191 (392)
T KOG4693|consen  118 KKPE-----VEGFVPGARDGHSACV-WGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVID  191 (392)
T ss_pred             cccc-----eeeecCCccCCceeeE-ECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhcc
Confidence            8765     4588999999999999 99999999999543 4467899999999999974331    1            


Q ss_pred             -------------------------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCC
Q 027962          144 -------------------------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADT  198 (216)
Q Consensus       144 -------------------------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~  198 (216)
                                               .+.+.|.++..|......+..|..|..|++.+  ++++||+|||+.....     
T Consensus       192 ~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fv--Yng~~Y~FGGYng~ln-----  264 (392)
T KOG4693|consen  192 GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFV--YNGKMYMFGGYNGTLN-----  264 (392)
T ss_pred             ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEE--EcceEEEecccchhhh-----
Confidence                                     08889999999999988788899999899988  7999999999953321     


Q ss_pred             cccccccceeEeeccc
Q 027962          199 SGLRFDGRLLLVELVP  214 (216)
Q Consensus       199 ~~~~~~~d~~~~~~~~  214 (216)
                         ...+|+|.||...
T Consensus       265 ---~HfndLy~FdP~t  277 (392)
T KOG4693|consen  265 ---VHFNDLYCFDPKT  277 (392)
T ss_pred             ---hhhcceeeccccc
Confidence               1567999998753

>PHA02790 Kelch-like protein; Provisional

Probab=99.91  E-value=7.4e-23  Score=177.34  Aligned_cols=165  Identities=14%  Similarity=0.136  Sum_probs=135.6

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      .++++++||++++    +|..+  .++|.+|..++++.+ +++||++||...    .+++++||+.+  ++|+.+     
T Consensus       285 ~~~~v~~Ydp~~~----~W~~~--~~m~~~r~~~~~v~~-~~~iYviGG~~~----~~sve~ydp~~--n~W~~~-----  346 (480)
T PHA02790        285 IHNNAIAVNYISN----NWIPI--PPMNSPRLYASGVPA-NNKLYVVGGLPN----PTSVERWFHGD--AAWVNM-----  346 (480)
T ss_pred             cCCeEEEEECCCC----EEEEC--CCCCchhhcceEEEE-CCEEEEECCcCC----CCceEEEECCC--CeEEEC-----
Confidence            4688999999997    99998  468899999999999 589999999842    25689999999  999999     


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccc---------------------cccc
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQS---------------------MLDS  147 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~  147 (216)
                         +++|.+|.+|++++ .+++||++||.+..   .+.+++||+.+++|...++.                     .+.+
T Consensus       347 ---~~l~~~r~~~~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~~e~  419 (480)
T PHA02790        347 ---PSLLKPRCNPAVAS-INNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRNAEF  419 (480)
T ss_pred             ---CCCCCCCcccEEEE-ECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCceEE
Confidence               78999999999888 99999999998532   36789999999999854321                     1568


Q ss_pred             cCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          148 RGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       148 ~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      |++.+++|+.++++   +.+|.++++++  .+++||++||.....          ..+.+.+||..
T Consensus       420 ydp~~~~W~~~~~m---~~~r~~~~~~v--~~~~IYviGG~~~~~----------~~~~ve~Yd~~  470 (480)
T PHA02790        420 YCESSNTWTLIDDP---IYPRDNPELII--VDNKLLLIGGFYRGS----------YIDTIEVYNNR  470 (480)
T ss_pred             ecCCCCcEeEcCCC---CCCccccEEEE--ECCEEEEECCcCCCc----------ccceEEEEECC
Confidence            99999999998765   67899888888  589999999985321          22456677654

>PLN02153 epithiospecifier protein

Probab=99.90  E-value=2e-22  Score=167.94  Aligned_cols=166  Identities=19%  Similarity=0.271  Sum_probs=126.3

Q ss_pred             ccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCC-------CCceeCcEEEEecCCCCccE
Q 027962            9 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGV-------GYEVLNDVWFLDVYEGFFKW   80 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~-------~~~~~~~~~~~d~~~~~~~W   80 (216)
                      .++++++||++++    +|++++ .+.+|.+|.+|+++++ +++|||+||...       .....+++++||+.+  ++|
T Consensus       157 ~~~~v~~yd~~~~----~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~--~~W  229 (341)
T PLN02153        157 RFRTIEAYNIADG----KWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPAS--GKW  229 (341)
T ss_pred             ccceEEEEECCCC----eEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCC--CcE
Confidence            4679999999997    999987 3345689999999999 589999998631       122368899999999  999


Q ss_pred             EEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCC--------CCCCCCceEEEecCCCCccccccccccccCccc
Q 027962           81 VQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS--------ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLL  152 (216)
Q Consensus        81 ~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (216)
                      +++.     ..+.+|.+|..|++++ .+++||||||...        .....+++++||++                  +
T Consensus       230 ~~~~-----~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~------------------~  285 (341)
T PLN02153        230 TEVE-----TTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE------------------T  285 (341)
T ss_pred             Eecc-----ccCCCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcC------------------c
Confidence            9985     3356799999999988 8999999999742        12346799999999                  7


Q ss_pred             CCceEeecCCCCCCCC--cceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          153 NMWKRLRAEGYKPNCR--SFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       153 ~~W~~~~~~~~~~~~r--~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      ++|+++...+..+.||  ..++.+.+..+++|||+||..+..         ...+|+|+|++-+
T Consensus       286 ~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~---------~~~~~~~~~~~~~  340 (341)
T PLN02153        286 LVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTN---------ERTDDLYFYAVNS  340 (341)
T ss_pred             cEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCC---------ccccceEEEeccc
Confidence            7999887544434444  444555544566999999996542         1458999998754

>PHA02713 hypothetical protein; Provisional

Probab=99.90  E-value=1.9e-22  Score=177.34  Aligned_cols=156  Identities=12%  Similarity=0.136  Sum_probs=131.9

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN   89 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~   89 (216)
                      ...+++||+.++    +|..+  .++|.+|.+|+++++ +++||++||........+++++||+.+  ++|+++      
T Consensus       271 ~~~v~~yd~~~~----~W~~l--~~mp~~r~~~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~------  335 (557)
T PHA02713        271 NPCILVYNINTM----EYSVI--STIPNHIINYASAIV-DNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVEL------  335 (557)
T ss_pred             CCCEEEEeCCCC----eEEEC--CCCCccccceEEEEE-CCEEEEEcCCCCCCCccceEEEEECCC--CeEeeC------
Confidence            357899999997    99998  468889999999999 589999999853445678999999999  999999      


Q ss_pred             CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-------------------c-----
Q 027962           90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-------------------M-----  144 (216)
Q Consensus        90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~-----  144 (216)
                        +++|.+|.+++++. .+++||++||.+. ....+.+++||+.+++|...++ +                   +     
T Consensus       336 --~~m~~~R~~~~~~~-~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~  411 (557)
T PHA02713        336 --PPMIKNRCRFSLAV-IDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHI  411 (557)
T ss_pred             --CCCcchhhceeEEE-ECCEEEEECCcCC-CCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccc
Confidence              78999999999888 9999999999864 3457889999999999984432 0                   0     


Q ss_pred             ----------------------ccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEcccc
Q 027962          145 ----------------------LDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       145 ----------------------~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                                            +.+|||.+++|+.++++   +.+|..|++++  .+++|||+||..
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~--~~~~IYv~GG~~  473 (557)
T PHA02713        412 DYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVS--HKDDIYVVCDIK  473 (557)
T ss_pred             ccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEE--ECCEEEEEeCCC
Confidence                                  34699999999998765   67898888888  589999999985

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.88  E-value=3.4e-21  Score=159.33  Aligned_cols=140  Identities=17%  Similarity=0.216  Sum_probs=111.6

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccE----EEecc
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKW----VQIPY   85 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W----~~~~~   85 (216)
                      .+++++|+...+  ..+|..+  .++|.+|.+|+++.+ +++||++||.. ....++++++||+.+  .+|    +.+  
T Consensus        38 ~~~v~~~~~~~~--~~~W~~~--~~lp~~r~~~~~~~~-~~~lyviGG~~-~~~~~~~v~~~d~~~--~~w~~~~~~~--  107 (323)
T TIGR03548        38 YKGIYIAKDENS--NLKWVKD--GQLPYEAAYGASVSV-ENGIYYIGGSN-SSERFSSVYRITLDE--SKEELICETI--  107 (323)
T ss_pred             eeeeEEEecCCC--ceeEEEc--ccCCccccceEEEEE-CCEEEEEcCCC-CCCCceeEEEEEEcC--CceeeeeeEc--
Confidence            578998863221  1479887  578899999999999 58999999985 445678999999999  887    455  


Q ss_pred             CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCC
Q 027962           86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKP  165 (216)
Q Consensus        86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  165 (216)
                            +++|.+|..|++++ .+++||++||... ....+++++||+.                  +++|+++...+  .
T Consensus       108 ------~~lp~~~~~~~~~~-~~~~iYv~GG~~~-~~~~~~v~~yd~~------------------~~~W~~~~~~p--~  159 (323)
T TIGR03548       108 ------GNLPFTFENGSACY-KDGTLYVGGGNRN-GKPSNKSYLFNLE------------------TQEWFELPDFP--G  159 (323)
T ss_pred             ------CCCCcCccCceEEE-ECCEEEEEeCcCC-CccCceEEEEcCC------------------CCCeeECCCCC--C
Confidence                  77899999999988 8999999999853 4457899999998                  77999987542  2


Q ss_pred             CCCcceeEEEecCCCEEEEEcccc
Q 027962          166 NCRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       166 ~~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                      .+|..|++++  .+++|||+||..
T Consensus       160 ~~r~~~~~~~--~~~~iYv~GG~~  181 (323)
T TIGR03548       160 EPRVQPVCVK--LQNELYVFGGGS  181 (323)
T ss_pred             CCCCcceEEE--ECCEEEEEcCCC
Confidence            4688787766  588999999974

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.88  E-value=4.2e-21  Score=158.80  Aligned_cols=142  Identities=17%  Similarity=0.263  Sum_probs=110.7

Q ss_pred             cccccEEEEeccCCccccce----EEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962            8 LRLGDTWVLELSENFCFGSW----QQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W----~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ..++++++||++++    +|    +.+  +++|.+|.+|+++++ +++||++||.. .....+++++||+.+  ++|+++
T Consensus        85 ~~~~~v~~~d~~~~----~w~~~~~~~--~~lp~~~~~~~~~~~-~~~iYv~GG~~-~~~~~~~v~~yd~~~--~~W~~~  154 (323)
T TIGR03548        85 ERFSSVYRITLDES----KEELICETI--GNLPFTFENGSACYK-DGTLYVGGGNR-NGKPSNKSYLFNLET--QEWFEL  154 (323)
T ss_pred             CCceeEEEEEEcCC----ceeeeeeEc--CCCCcCccCceEEEE-CCEEEEEeCcC-CCccCceEEEEcCCC--CCeeEC
Confidence            34789999999986    77    444  578899999999999 58999999984 445579999999999  999999


Q ss_pred             ccCcCCCCCCCC-CCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCC
Q 027962           84 PYELQNIPAGFS-LPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG  162 (216)
Q Consensus        84 ~~~~~~~~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  162 (216)
                              .++| .+|..|+++. .+++||++||.+.  ....++++||++                  +++|+++..+.
T Consensus       155 --------~~~p~~~r~~~~~~~-~~~~iYv~GG~~~--~~~~~~~~yd~~------------------~~~W~~~~~~~  205 (323)
T TIGR03548       155 --------PDFPGEPRVQPVCVK-LQNELYVFGGGSN--IAYTDGYKYSPK------------------KNQWQKVADPT  205 (323)
T ss_pred             --------CCCCCCCCCcceEEE-ECCEEEEEcCCCC--ccccceEEEecC------------------CCeeEECCCCC
Confidence                    5566 4788888877 8999999999863  234678899988                  77999987653


Q ss_pred             C--CCCCCcceeEEEecCCCEEEEEcccc
Q 027962          163 Y--KPNCRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       163 ~--~~~~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                      .  .|..+..++.+++ .+++|||+||..
T Consensus       206 ~~~~p~~~~~~~~~~~-~~~~iyv~GG~~  233 (323)
T TIGR03548       206 TDSEPISLLGAASIKI-NESLLLCIGGFN  233 (323)
T ss_pred             CCCCceeccceeEEEE-CCCEEEEECCcC
Confidence            2  2333444444443 578999999985

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.88  E-value=6.8e-22  Score=160.92  Aligned_cols=148  Identities=28%  Similarity=0.496  Sum_probs=121.4

Q ss_pred             cCCCCCCCcCceEEEEc-CCeEEEEccC---CCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEe
Q 027962           32 THPSPPARSGHSLTRIG-GNRTVLFGGR---GVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLIL  107 (216)
Q Consensus        32 ~~~~p~~r~~h~~~~~~-~~~iyv~GG~---~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~  107 (216)
                      .-++|.||++.++++.. .+++++|||-   +.....+|++|.|++++  ++|.++      ..++.|.+|..|.++++.
T Consensus        60 ~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~--~eWkk~------~spn~P~pRsshq~va~~  131 (521)
T KOG1230|consen   60 SVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK--NEWKKV------VSPNAPPPRSSHQAVAVP  131 (521)
T ss_pred             cCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccc--cceeEe------ccCCCcCCCccceeEEec
Confidence            45788999999988863 3479999996   22345799999999999  999998      567789999999999978


Q ss_pred             CCEEEEEeCcCCC-----CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEE
Q 027962          108 GGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYL  182 (216)
Q Consensus       108 ~~~l~v~GG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l  182 (216)
                      .+.+|||||.-..     .-.+.|+|.||+.                  +++|+++...| .|.+|++|-|++  ..++|
T Consensus       132 s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~------------------trkweql~~~g-~PS~RSGHRMva--wK~~l  190 (521)
T KOG1230|consen  132 SNILWLFGGEFASPNQEQFHHYKDLWLFDLK------------------TRKWEQLEFGG-GPSPRSGHRMVA--WKRQL  190 (521)
T ss_pred             cCeEEEeccccCCcchhhhhhhhheeeeeec------------------cchheeeccCC-CCCCCccceeEE--eeeeE
Confidence            7899999996321     1235799999999                  88999999865 799999999999  58999


Q ss_pred             EEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          183 YVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       183 ~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      +||||..+..      .+..|+||+|+||++.
T Consensus       191 ilFGGFhd~n------r~y~YyNDvy~FdLdt  216 (521)
T KOG1230|consen  191 ILFGGFHDSN------RDYIYYNDVYAFDLDT  216 (521)
T ss_pred             EEEcceecCC------CceEEeeeeEEEeccc
Confidence            9999996542      2334889999999973

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.87  E-value=8.7e-21  Score=158.31  Aligned_cols=173  Identities=17%  Similarity=0.200  Sum_probs=127.3

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEE-EEcCCeEEEEccCCCCC-------------------------
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLT-RIGGNRTVLFGGRGVGY-------------------------   62 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~-~~~~~~iyv~GG~~~~~-------------------------   62 (216)
                      .++++|+||+.++    +|+++.. ++|.+|.+|+++ .+ +++||++||.....                         
T Consensus        83 ~~~~v~~Yd~~~~----~W~~~~~-~~p~~~~~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (346)
T TIGR03547        83 VFDDVYRYDPKKN----SWQKLDT-RSPVGLLGASGFSLH-NGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY  156 (346)
T ss_pred             ecccEEEEECCCC----EEecCCC-CCCCcccceeEEEEe-CCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence            4789999999998    9999852 456777888877 57 68999999984210                         


Q ss_pred             --------ceeCcEEEEecCCCCccEEEeccCcCCCCCCCCC-CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEec-
Q 027962           63 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDT-  132 (216)
Q Consensus        63 --------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~-  132 (216)
                              ...+++++||+.+  ++|+.+        +++|. +|.+|+++. .+++||++||..........++.|++ 
T Consensus       157 ~~~~~~~~~~~~~v~~YDp~t--~~W~~~--------~~~p~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y~~~  225 (346)
T TIGR03547       157 FSQPPEDYFWNKNVLSYDPST--NQWRNL--------GENPFLGTAGSAIVH-KGNKLLLINGEIKPGLRTAEVKQYLFT  225 (346)
T ss_pred             hCCChhHcCccceEEEEECCC--CceeEC--------ccCCCCcCCCceEEE-ECCEEEEEeeeeCCCccchheEEEEec
Confidence                    0147899999999  999999        67775 688887777 89999999998644333455666654 


Q ss_pred             -CCCCccccccc-----------------------------------------------------cccccCcccCCceEe
Q 027962          133 -KAIPFTSVQQS-----------------------------------------------------MLDSRGLLLNMWKRL  158 (216)
Q Consensus       133 -~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~W~~~  158 (216)
                       ++++|...+..                                                     -+.+|++.+++|+.+
T Consensus       226 ~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  305 (346)
T TIGR03547       226 GGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKV  305 (346)
T ss_pred             CCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCccccc
Confidence             56688622100                                                     023788899999988


Q ss_pred             ecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeec
Q 027962          159 RAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVEL  212 (216)
Q Consensus       159 ~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~  212 (216)
                      ...   |.+|..|++++  .+++|||+||......         ..+++++|-+
T Consensus       306 ~~l---p~~~~~~~~~~--~~~~iyv~GG~~~~~~---------~~~~v~~~~~  345 (346)
T TIGR03547       306 GKL---PQGLAYGVSVS--WNNGVLLIGGENSGGK---------AVTDVYLLSW  345 (346)
T ss_pred             CCC---CCCceeeEEEE--cCCEEEEEeccCCCCC---------EeeeEEEEEe
Confidence            765   77888777665  6999999999854321         4567776654

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.86  E-value=2.7e-20  Score=155.30  Aligned_cols=159  Identities=20%  Similarity=0.314  Sum_probs=107.1

Q ss_pred             cccEEEEec--cCCccccceEEcccCCCC-CCCcCceEEEEcCCeEEEEccCCCCC-----ceeCcEEEEecCCCCccEE
Q 027962           10 LGDTWVLEL--SENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGVGY-----EVLNDVWFLDVYEGFFKWV   81 (216)
Q Consensus        10 ~~~~~~~d~--~~~~~~~~W~~~~~~~~p-~~r~~h~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~~d~~~~~~~W~   81 (216)
                      .+++++||+  .++    +|++++  ++| .+|.+|+++.+ +++|||+||.....     ..++++|+||+.+  ++|+
T Consensus        28 ~~~~~~~d~~~~~~----~W~~l~--~~p~~~R~~~~~~~~-~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~--~~W~   98 (346)
T TIGR03547        28 GTSWYKLDLKKPSK----GWQKIA--DFPGGPRNQAVAAAI-DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK--NSWQ   98 (346)
T ss_pred             CCeeEEEECCCCCC----CceECC--CCCCCCcccceEEEE-CCEEEEEeCCCCCCCCCcceecccEEEEECCC--CEEe
Confidence            368999997  344    899984  566 58999999999 58999999985321     2578999999999  9999


Q ss_pred             EeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC--CCCCceEEEecCCCCccccc-------------ccccc
Q 027962           82 QIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR--RRKDDFWVLDTKAIPFTSVQ-------------QSMLD  146 (216)
Q Consensus        82 ~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~--~~~~~~~~~~~~~~~~~~~~-------------~~~~~  146 (216)
                      ++.       ..+|.+|.+|+++...+++||++||.+...  ....++..++.....|....             ...+.
T Consensus        99 ~~~-------~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  171 (346)
T TIGR03547        99 KLD-------TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL  171 (346)
T ss_pred             cCC-------CCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence            993       346777888877633899999999986320  01111111111111110000             01133


Q ss_pred             ccCcccCCceEeecCCCCCC-CCcceeEEEecCCCEEEEEcccc
Q 027962          147 SRGLLLNMWKRLRAEGYKPN-CRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       147 ~~~~~~~~W~~~~~~~~~~~-~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                      +||+.+++|+.+..+   |. +|.+|++++  .+++|||+||..
T Consensus       172 ~YDp~t~~W~~~~~~---p~~~r~~~~~~~--~~~~iyv~GG~~  210 (346)
T TIGR03547       172 SYDPSTNQWRNLGEN---PFLGTAGSAIVH--KGNKLLLINGEI  210 (346)
T ss_pred             EEECCCCceeECccC---CCCcCCCceEEE--ECCEEEEEeeee
Confidence            334448899998765   43 678887777  589999999984

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.85  E-value=2.7e-20  Score=156.95  Aligned_cols=174  Identities=17%  Similarity=0.259  Sum_probs=127.6

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEE-EcCCeEEEEccCCCCC-------------------------
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTR-IGGNRTVLFGGRGVGY-------------------------   62 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~-~~~~~iyv~GG~~~~~-------------------------   62 (216)
                      .++++|+||+.++    +|+++.. ..|.++.+|++++ . +++||++||.....                         
T Consensus       104 ~~~~v~~YD~~~n----~W~~~~~-~~p~~~~~~~~~~~~-~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~  177 (376)
T PRK14131        104 VFDDVYKYDPKTN----SWQKLDT-RSPVGLAGHVAVSLH-NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY  177 (376)
T ss_pred             EcccEEEEeCCCC----EEEeCCC-CCCCcccceEEEEee-CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence            3689999999998    9999853 3467778888887 6 68999999984210                         


Q ss_pred             --------ceeCcEEEEecCCCCccEEEeccCcCCCCCCCCC-CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEE--Ee
Q 027962           63 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSL-PRVGHSATLILGGRVLIYGGEDSARRRKDDFWV--LD  131 (216)
Q Consensus        63 --------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~--~~  131 (216)
                              ...+++++||+.+  ++|+.+        +.+|. +|.+|+++. .+++||++||....+....+++.  +|
T Consensus       178 ~~~~~~~~~~~~~v~~YD~~t--~~W~~~--------~~~p~~~~~~~a~v~-~~~~iYv~GG~~~~~~~~~~~~~~~~~  246 (376)
T PRK14131        178 FDKKPEDYFFNKEVLSYDPST--NQWKNA--------GESPFLGTAGSAVVI-KGNKLWLINGEIKPGLRTDAVKQGKFT  246 (376)
T ss_pred             hcCChhhcCcCceEEEEECCC--CeeeEC--------CcCCCCCCCcceEEE-ECCEEEEEeeeECCCcCChhheEEEec
Confidence                    1247899999999  999998        66775 678887777 89999999997544444455554  45


Q ss_pred             cCCCCccccccc------------------------------------------------------cccccCcccCCceE
Q 027962          132 TKAIPFTSVQQS------------------------------------------------------MLDSRGLLLNMWKR  157 (216)
Q Consensus       132 ~~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~~W~~  157 (216)
                      +++.+|...+..                                                      .+.+||+.+++|+.
T Consensus       247 ~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~  326 (376)
T PRK14131        247 GNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQK  326 (376)
T ss_pred             CCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccc
Confidence            577888622100                                                      01258999999998


Q ss_pred             eecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          158 LRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       158 ~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      +...   |.+|..|++++  .+++|||+||......         ..+++++|+..
T Consensus       327 ~~~l---p~~r~~~~av~--~~~~iyv~GG~~~~~~---------~~~~v~~~~~~  368 (376)
T PRK14131        327 VGEL---PQGLAYGVSVS--WNNGVLLIGGETAGGK---------AVSDVTLLSWD  368 (376)
T ss_pred             cCcC---CCCccceEEEE--eCCEEEEEcCCCCCCc---------EeeeEEEEEEc
Confidence            8654   78898887666  6899999999753311         34678777754

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.83  E-value=3.7e-19  Score=150.05  Aligned_cols=143  Identities=21%  Similarity=0.369  Sum_probs=105.5

Q ss_pred             ccEEEEeccCCccccceEEcccCCCC-CCCcCceEEEEcCCeEEEEccCCC-C----CceeCcEEEEecCCCCccEEEec
Q 027962           11 GDTWVLELSENFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRGV-G----YEVLNDVWFLDVYEGFFKWVQIP   84 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~~~~~~~p-~~r~~h~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~~d~~~~~~~W~~~~   84 (216)
                      +.+++||++..  ..+|.++.  ++| .+|.+|+++.+ +++|||+||... .    ...++++|+||+.+  ++|+.+.
T Consensus        50 ~~~~~~d~~~~--~~~W~~l~--~~p~~~r~~~~~v~~-~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~--n~W~~~~  122 (376)
T PRK14131         50 TSWYKLDLNAP--SKGWTKIA--AFPGGPREQAVAAFI-DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT--NSWQKLD  122 (376)
T ss_pred             CeEEEEECCCC--CCCeEECC--cCCCCCcccceEEEE-CCEEEEEcCCCCCCCCCceeEcccEEEEeCCC--CEEEeCC
Confidence            56899998631  12899884  444 58999999999 589999999853 1    23578999999999  9999993


Q ss_pred             cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--CC-------------------------------CCCceEEEe
Q 027962           85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--RR-------------------------------RKDDFWVLD  131 (216)
Q Consensus        85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~-------------------------------~~~~~~~~~  131 (216)
                             ...|.+|.+|+++++.+++||++||.+..  ..                               ..+++++||
T Consensus       123 -------~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD  195 (376)
T PRK14131        123 -------TRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYD  195 (376)
T ss_pred             -------CCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEE
Confidence                   23577788887766578999999998531  00                               124556666


Q ss_pred             cCCCCccccccccccccCcccCCceEeecCCCCCC-CCcceeEEEecCCCEEEEEccccC
Q 027962          132 TKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPN-CRSFHRACPDYSGRYLYVFGGMVD  190 (216)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~-~r~~h~~~~~~~~~~l~i~GG~~~  190 (216)
                      +.                  +++|..+...   |. +|.+|++++  .+++|||+||...
T Consensus       196 ~~------------------t~~W~~~~~~---p~~~~~~~a~v~--~~~~iYv~GG~~~  232 (376)
T PRK14131        196 PS------------------TNQWKNAGES---PFLGTAGSAVVI--KGNKLWLINGEIK  232 (376)
T ss_pred             CC------------------CCeeeECCcC---CCCCCCcceEEE--ECCEEEEEeeeEC
Confidence            55                  8899987654   53 677777766  5889999999743

>PHA03098 kelch-like protein; Provisional

Probab=99.83  E-value=3e-19  Score=157.08  Aligned_cols=170  Identities=14%  Similarity=0.088  Sum_probs=129.5

Q ss_pred             cEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCC
Q 027962           12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIP   91 (216)
Q Consensus        12 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~   91 (216)
                      .+.+|+..++    +|..+.  +.| .+..|+++++ ++++|++||........+++++||+.+  ++|..+        
T Consensus       265 ~~~~~~~~~~----~~~~~~--~~~-~~~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~--------  326 (534)
T PHA03098        265 NYITNYSPLS----EINTII--DIH-YVYCFGSVVL-NNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV--------  326 (534)
T ss_pred             eeeecchhhh----hccccc--Ccc-ccccceEEEE-CCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC--------
Confidence            3445666664    787763  222 3455788888 589999999965555678999999999  999998        


Q ss_pred             CCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c---------------------------
Q 027962           92 AGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S---------------------------  143 (216)
Q Consensus        92 ~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------  143 (216)
                      +++|.+|.+|+++. .+++||++||.+. ....+++++||+.+.+|...++ +                           
T Consensus       327 ~~~~~~R~~~~~~~-~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~  404 (534)
T PHA03098        327 PELIYPRKNPGVTV-FNNRIYVIGGIYN-SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL  404 (534)
T ss_pred             CCCCcccccceEEE-ECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc
Confidence            78899999999988 8999999999873 4567899999999999984432 0                           


Q ss_pred             --cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 --MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 --~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                        .+..||+.+++|+.+.+.   |.+|.+|++++  .+++|||+||.......     .  ..+++++||..
T Consensus       405 ~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~~~-----~--~~~~v~~yd~~  464 (534)
T PHA03098        405 LKTVECFSLNTNKWSKGSPL---PISHYGGCAIY--HDGKIYVIGGISYIDNI-----K--VYNIVESYNPV  464 (534)
T ss_pred             cceEEEEeCCCCeeeecCCC---CccccCceEEE--ECCEEEEECCccCCCCC-----c--ccceEEEecCC
Confidence              167899999999998754   77898898877  58899999998533110     0  12457777754

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=8.1e-20  Score=152.50  Aligned_cols=158  Identities=25%  Similarity=0.475  Sum_probs=130.3

Q ss_pred             cceEEcc--cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCce
Q 027962           25 GSWQQLV--THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS  102 (216)
Q Consensus        25 ~~W~~~~--~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~  102 (216)
                      .+|+++.  +++.|.||-+|.+++|+ .-|+||||-++  -..+.+..|+..+  ++|..-.     ..++.|.+.+.|.
T Consensus        17 ~rWrrV~~~tGPvPrpRHGHRAVaik-ELiviFGGGNE--GiiDELHvYNTat--nqWf~Pa-----vrGDiPpgcAA~G   86 (830)
T KOG4152|consen   17 VRWRRVQQSTGPVPRPRHGHRAVAIK-ELIVIFGGGNE--GIIDELHVYNTAT--NQWFAPA-----VRGDIPPGCAAFG   86 (830)
T ss_pred             cceEEEecccCCCCCccccchheeee-eeEEEecCCcc--cchhhhhhhcccc--ceeecch-----hcCCCCCchhhcc
Confidence            4899998  78899999999999995 57999998843  4567899999999  9997543     4589999998888


Q ss_pred             EEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC----CCCCCCCcceeEEEecC
Q 027962          103 ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE----GYKPNCRSFHRACPDYS  178 (216)
Q Consensus       103 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~r~~h~~~~~~~  178 (216)
                      +++ .+.+||+|||.-+.+.+.+|++.+...                  .+.|+++.+.    |..|+||.+|+..+  .
T Consensus        87 fvc-dGtrilvFGGMvEYGkYsNdLYELQas------------------RWeWkrlkp~~p~nG~pPCPRlGHSFsl--~  145 (830)
T KOG4152|consen   87 FVC-DGTRILVFGGMVEYGKYSNDLYELQAS------------------RWEWKRLKPKTPKNGPPPCPRLGHSFSL--V  145 (830)
T ss_pred             eEe-cCceEEEEccEeeeccccchHHHhhhh------------------hhhHhhcCCCCCCCCCCCCCccCceeEE--e
Confidence            888 999999999999999999999887766                  6688887654    56688999999998  6


Q ss_pred             CCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          179 GRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       179 ~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      +++.|+|||..++..+..... -+|.||+|.+++.+
T Consensus       146 gnKcYlFGGLaNdseDpknNv-PrYLnDlY~leL~~  180 (830)
T KOG4152|consen  146 GNKCYLFGGLANDSEDPKNNV-PRYLNDLYILELRP  180 (830)
T ss_pred             ccEeEEeccccccccCccccc-chhhcceEEEEecc
Confidence            899999999976544433333 35999999999873

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.79  E-value=6.6e-19  Score=147.11  Aligned_cols=172  Identities=23%  Similarity=0.381  Sum_probs=138.8

Q ss_pred             ccccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            9 RLGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      -..++..|+.++|    +|-... .++.|++-+-|.++..+ ++||+|||..+...+.|++|.+....  -.|.++. .+
T Consensus        55 iiDELHvYNTatn----qWf~PavrGDiPpgcAA~GfvcdG-trilvFGGMvEYGkYsNdLYELQasR--WeWkrlk-p~  126 (830)
T KOG4152|consen   55 IIDELHVYNTATN----QWFAPAVRGDIPPGCAAFGFVCDG-TRILVFGGMVEYGKYSNDLYELQASR--WEWKRLK-PK  126 (830)
T ss_pred             chhhhhhhccccc----eeecchhcCCCCCchhhcceEecC-ceEEEEccEeeeccccchHHHhhhhh--hhHhhcC-CC
Confidence            3678889999998    998777 78999999999999995 79999999977788899998877665  6677764 22


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--------CCCCCceEEEecCCCCccccccccccccCcccCCceEee
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--------RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLR  159 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  159 (216)
                      ....+.+|++|.+|+..+ .+.+-|+|||...+        ..+++|++++++..              ....-.|+.+.
T Consensus       127 ~p~nG~pPCPRlGHSFsl-~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~--------------Gsgvv~W~ip~  191 (830)
T KOG4152|consen  127 TPKNGPPPCPRLGHSFSL-VGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRP--------------GSGVVAWDIPI  191 (830)
T ss_pred             CCCCCCCCCCccCceeEE-eccEeEEeccccccccCcccccchhhcceEEEEecc--------------CCceEEEeccc
Confidence            334567899999999988 99999999997321        24689999998862              22256899999


Q ss_pred             cCCCCCCCCcceeEEEecCC----CEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          160 AEGYKPNCRSFHRACPDYSG----RYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       160 ~~~~~~~~r~~h~~~~~~~~----~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      ..|-.|.+|..|++++...+    .++||+||++..           ..+|+|.+|++.
T Consensus       192 t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-----------RLgDLW~Ldl~T  239 (830)
T KOG4152|consen  192 TYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-----------RLGDLWTLDLDT  239 (830)
T ss_pred             ccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-----------cccceeEEecce
Confidence            88999999999999987443    389999999755           568999999874

>PHA02790 Kelch-like protein; Provisional

Probab=99.67  E-value=1.2e-15  Score=132.50  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=88.1

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN   89 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~   89 (216)
                      .+++++||+.++    +|..+  .++|.+|.+|+++++ +++||++||... .  .+.+.+||+.+  ++|+.+      
T Consensus       330 ~~sve~ydp~~n----~W~~~--~~l~~~r~~~~~~~~-~g~IYviGG~~~-~--~~~ve~ydp~~--~~W~~~------  391 (480)
T PHA02790        330 PTSVERWFHGDA----AWVNM--PSLLKPRCNPAVASI-NNVIYVIGGHSE-T--DTTTEYLLPNH--DQWQFG------  391 (480)
T ss_pred             CCceEEEECCCC----eEEEC--CCCCCCCcccEEEEE-CCEEEEecCcCC-C--CccEEEEeCCC--CEEEeC------
Confidence            367999999997    99988  478899999999999 689999999842 2  36789999999  999999      


Q ss_pred             CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc
Q 027962           90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ  141 (216)
Q Consensus        90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                        .++|.+|.+|++++ .+++||++||.         +++||+++++|+..+
T Consensus       392 --~~m~~~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~~~~W~~~~  431 (480)
T PHA02790        392 --PSTYYPHYKSCALV-FGRRLFLVGRN---------AEFYCESSNTWTLID  431 (480)
T ss_pred             --CCCCCccccceEEE-ECCEEEEECCc---------eEEecCCCCcEeEcC
Confidence              78999999998888 99999999984         478999999998443

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.50  E-value=1.1e-13  Score=111.69  Aligned_cols=173  Identities=19%  Similarity=0.267  Sum_probs=121.6

Q ss_pred             CccCCCCcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCC----CceeCcEEEEecCCC
Q 027962            1 MCIGLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVG----YEVLNDVWFLDVYEG   76 (216)
Q Consensus         1 ~~~g~~~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~----~~~~~~~~~~d~~~~   76 (216)
                      +|+|+.++   +.+.+|++..  ...|+++.. -+..+|.+.+++.+ +++||+|||.+..    ...++++|+||+.+ 
T Consensus        51 VGLGs~G~---afy~ldL~~~--~k~W~~~a~-FpG~~rnqa~~a~~-~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~-  122 (381)
T COG3055          51 VGLGSAGT---AFYVLDLKKP--GKGWTKIAD-FPGGARNQAVAAVI-GGKLYVFGGYGKSVSSSPQVFNDAYRYDPST-  122 (381)
T ss_pred             EEeccCCc---cceehhhhcC--CCCceEccc-CCCcccccchheee-CCeEEEeeccccCCCCCceEeeeeEEecCCC-
Confidence            35665555   7888888752  248999863 34568999999999 6899999998532    34699999999999 


Q ss_pred             CccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCC--CCCCCceEEEecCCCCccccc-------c-----
Q 027962           77 FFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSA--RRRKDDFWVLDTKAIPFTSVQ-------Q-----  142 (216)
Q Consensus        77 ~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~~~~~~~~~~~~~~~~~-------~-----  142 (216)
                       ++|.++.       ...|....++.++...+.+++++||.+..  +.++.|+-..+-+...+....       .     
T Consensus       123 -nsW~kl~-------t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~  194 (381)
T COG3055         123 -NSWHKLD-------TRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFF  194 (381)
T ss_pred             -Chhheec-------cccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcc
Confidence             9999995       55677888888888444499999998642  334455555444433332211       0     


Q ss_pred             -ccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCC
Q 027962          143 -SMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLV  193 (216)
Q Consensus       143 -~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~  193 (216)
                       ..++.|+|.+++|+.+...+  -.++++++.+.  .++++.++-|+.-+..
T Consensus       195 n~ev~sy~p~~n~W~~~G~~p--f~~~aGsa~~~--~~n~~~lInGEiKpGL  242 (381)
T COG3055         195 NKEVLSYDPSTNQWRNLGENP--FYGNAGSAVVI--KGNKLTLINGEIKPGL  242 (381)
T ss_pred             cccccccccccchhhhcCcCc--ccCccCcceee--cCCeEEEEcceecCCc
Confidence             24999999999999886442  24556543333  7788999988865544

>PF13964 Kelch_6: Kelch motif

Probab=99.35  E-value=3.4e-12  Score=76.31  Aligned_cols=50  Identities=32%  Similarity=0.463  Sum_probs=45.0

Q ss_pred             CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCC
Q 027962           38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPR   98 (216)
Q Consensus        38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r   98 (216)
                      ||.+|+++.+ +++|||+||.......++++++||+++  ++|+++        +++|.+|
T Consensus         1 pR~~~s~v~~-~~~iyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~--------~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVV-GGKIYVFGGYDNSGKYSNDVERYDPET--NTWEQL--------PPMPTPR   50 (50)
T ss_pred             CCccCEEEEE-CCEEEEECCCCCCCCccccEEEEcCCC--CcEEEC--------CCCCCCC
Confidence            6899999999 589999999964477899999999999  999999        7888887

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.30  E-value=7e-12  Score=105.23  Aligned_cols=157  Identities=24%  Similarity=0.372  Sum_probs=114.4

Q ss_pred             ccceEEcc-cC-------CCCCCCcCceEEEEc-CCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCC
Q 027962           24 FGSWQQLV-TH-------PSPPARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGF   94 (216)
Q Consensus        24 ~~~W~~~~-~~-------~~p~~r~~h~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~   94 (216)
                      +..|.++. ..       .-|--|.+|-|+.-. ++.+|++||.+ .-+.+.|.|.|...+  ++|+.+.     .....
T Consensus       238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd-G~~~l~DFW~Y~v~e--~~W~~iN-----~~t~~  309 (723)
T KOG2437|consen  238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD-GTQDLADFWAYSVKE--NQWTCIN-----RDTEG  309 (723)
T ss_pred             cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc-cchhHHHHHhhcCCc--ceeEEee-----cCCCC
Confidence            45888876 22       356779999999873 34799999995 566689999999999  9999996     66668


Q ss_pred             CCCCCCceEEEE-eCCEEEEEeCcCCC-----CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCC---CCC
Q 027962           95 SLPRVGHSATLI-LGGRVLIYGGEDSA-----RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG---YKP  165 (216)
Q Consensus        95 p~~r~~~~~~~~-~~~~l~v~GG~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~  165 (216)
                      |..|.+|-+++. .+.+||+.|-+-..     .....|+|+||..                  ++.|.-+.-..   -.|
T Consensus       310 PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~------------------~~~W~~ls~dt~~dGGP  371 (723)
T KOG2437|consen  310 PGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDID------------------TNTWMLLSEDTAADGGP  371 (723)
T ss_pred             CcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecC------------------CceeEEecccccccCCc
Confidence            999999999883 33489999865321     2335799999999                  66777665432   246


Q ss_pred             CCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          166 NCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       166 ~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      ..-+.|.++++...+.+|||||..-...+  .     -..-+|.|+..
T Consensus       372 ~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e--~-----~f~GLYaf~~~  412 (723)
T KOG2437|consen  372 KLVFDHQMCVDSEKHMIYVFGGRILTCNE--P-----QFSGLYAFNCQ  412 (723)
T ss_pred             ceeecceeeEecCcceEEEecCeeccCCC--c-----cccceEEEecC
Confidence            66789999997555579999999543221  1     22356666654

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.22  E-value=1.8e-11  Score=72.84  Aligned_cols=44  Identities=39%  Similarity=0.770  Sum_probs=30.6

Q ss_pred             CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962           38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus        38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ||.+|+++.+++++||||||.......++++|+||+++  ++|+++
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~--~~W~~~   44 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIET--NTWTRL   44 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTT--TEEEE-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCC--CEEEEC
Confidence            79999999996689999999976667899999999999  999999

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.21  E-value=5e-12  Score=106.09  Aligned_cols=152  Identities=22%  Similarity=0.383  Sum_probs=116.0

Q ss_pred             cccEEEEeccCCccccceEEcc-cCCCCCCCcCceEEEEc-CCeEEEEccCCC-----CCceeCcEEEEecCCCCccEEE
Q 027962           10 LGDTWVLELSENFCFGSWQQLV-THPSPPARSGHSLTRIG-GNRTVLFGGRGV-----GYEVLNDVWFLDVYEGFFKWVQ   82 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~-~~~~p~~r~~h~~~~~~-~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~~~W~~   82 (216)
                      +.|+|.|....+    +|..+. -+..|-.|+-|.|+... ..++|+.|-+-.     ....-+|+|+||..+  +.|..
T Consensus       287 l~DFW~Y~v~e~----~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~--~~W~~  360 (723)
T KOG2437|consen  287 LADFWAYSVKEN----QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDT--NTWML  360 (723)
T ss_pred             HHHHHhhcCCcc----eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCC--ceeEE
Confidence            789999999998    999887 34578899999999862 238999998721     122357899999999  99999


Q ss_pred             eccCcCCCC-CCCCCCCCCceEEEEeCCE--EEEEeCcCC--CCCCCCceEEEecCCCCccccccccccccCcccCCceE
Q 027962           83 IPYELQNIP-AGFSLPRVGHSATLILGGR--VLIYGGEDS--ARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKR  157 (216)
Q Consensus        83 ~~~~~~~~~-~~~p~~r~~~~~~~~~~~~--l~v~GG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  157 (216)
                      ++   +++. ..-|...+.|.+++ .+++  +|||||+.-  +......+++|++.                  ...|+.
T Consensus       361 ls---~dt~~dGGP~~vfDHqM~V-d~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~------------------~~~w~~  418 (723)
T KOG2437|consen  361 LS---EDTAADGGPKLVFDHQMCV-DSEKHMIYVFGGRILTCNEPQFSGLYAFNCQ------------------CQTWKL  418 (723)
T ss_pred             ec---ccccccCCcceeecceeeE-ecCcceEEEecCeeccCCCccccceEEEecC------------------CccHHH
Confidence            85   3232 23588899999999 5555  999999842  33567889999998                  668876


Q ss_pred             eecC-----C--CCCCCCcceeEEEecCCCEEEEEcccc
Q 027962          158 LRAE-----G--YKPNCRSFHRACPDYSGRYLYVFGGMV  189 (216)
Q Consensus       158 ~~~~-----~--~~~~~r~~h~~~~~~~~~~l~i~GG~~  189 (216)
                      +...     +  +....|.+|.+.+...++++|+|||..
T Consensus       419 l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~  457 (723)
T KOG2437|consen  419 LREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR  457 (723)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence            5432     1  113458899999988888999999975

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.20  E-value=3.1e-10  Score=91.97  Aligned_cols=162  Identities=19%  Similarity=0.302  Sum_probs=116.1

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCC-----------------------------
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV-----------------------------   60 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~-----------------------------   60 (216)
                      ++|+|+||+++|    +|.++.+ ..|....+++++.+++.+||++||.+.                             
T Consensus       112 ~nd~Y~y~p~~n----sW~kl~t-~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~  186 (381)
T COG3055         112 FNDAYRYDPSTN----SWHKLDT-RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD  186 (381)
T ss_pred             eeeeEEecCCCC----hhheecc-ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence            799999999998    9999974 445668999999996558999999732                             


Q ss_pred             ----CCceeCcEEEEecCCCCccEEEeccCcCCCCC-CCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecC--
Q 027962           61 ----GYEVLNDVWFLDVYEGFFKWVQIPYELQNIPA-GFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK--  133 (216)
Q Consensus        61 ----~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~--  133 (216)
                          +......++.|++++  ++|+.+        + .+-.++++++.+. .++++.++-|.-.++.+...+++++..  
T Consensus       187 ~~~~dy~~n~ev~sy~p~~--n~W~~~--------G~~pf~~~aGsa~~~-~~n~~~lInGEiKpGLRt~~~k~~~~~~~  255 (381)
T COG3055         187 KKAEDYFFNKEVLSYDPST--NQWRNL--------GENPFYGNAGSAVVI-KGNKLTLINGEIKPGLRTAEVKQADFGGD  255 (381)
T ss_pred             CCHHHhccccccccccccc--chhhhc--------CcCcccCccCcceee-cCCeEEEEcceecCCccccceeEEEeccC
Confidence                122466788999999  999988        5 4445677755444 778899999986666666666666544  


Q ss_pred             CCCcccccc----c----c-----------------------------------------------ccccCcccCCceEe
Q 027962          134 AIPFTSVQQ----S----M-----------------------------------------------LDSRGLLLNMWKRL  158 (216)
Q Consensus       134 ~~~~~~~~~----~----~-----------------------------------------------~~~~~~~~~~W~~~  158 (216)
                      ..+|.....    .    +                                               |..++  .+.|+.+
T Consensus       256 ~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~  333 (381)
T COG3055         256 NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIV  333 (381)
T ss_pred             ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeee
Confidence            556653311    0    0                                               55555  7888887


Q ss_pred             ecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCC
Q 027962          159 RAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQ  194 (216)
Q Consensus       159 ~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~  194 (216)
                      ...   |.++..-.++.  .++.+|++||+..+...
T Consensus       334 GeL---p~~l~YG~s~~--~nn~vl~IGGE~~~Gka  364 (381)
T COG3055         334 GEL---PQGLAYGVSLS--YNNKVLLIGGETSGGKA  364 (381)
T ss_pred             ccc---CCCccceEEEe--cCCcEEEEccccCCCee
Confidence            554   66765444444  68999999999766543

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.19  E-value=9.1e-11  Score=69.72  Aligned_cols=46  Identities=41%  Similarity=0.777  Sum_probs=41.9

Q ss_pred             CeEEEEccCC-CCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEE
Q 027962           50 NRTVLFGGRG-VGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL  105 (216)
Q Consensus        50 ~~iyv~GG~~-~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~  105 (216)
                      +++|||||.+ .....++++|+||+.+  .+|+++        +++|.+|.+|++++
T Consensus         2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~--------~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    2 NKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI--------GDLPPPRSGHTATV   48 (49)
T ss_pred             CEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC--------CCCCCCccceEEEE
Confidence            6899999996 4678899999999999  999999        78999999999986

>PLN02772 guanylate kinase

Probab=99.10  E-value=6.9e-10  Score=92.60  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             CCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeE
Q 027962           94 FSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRA  173 (216)
Q Consensus        94 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~  173 (216)
                      -+.++..|+++. .++++||+||.++.....+++++||..                  +..|..+...|..|.+|-+|++
T Consensus        21 ~~~~~~~~tav~-igdk~yv~GG~~d~~~~~~~v~i~D~~------------------t~~W~~P~V~G~~P~~r~GhSa   81 (398)
T PLN02772         21 GVKPKNRETSVT-IGDKTYVIGGNHEGNTLSIGVQILDKI------------------TNNWVSPIVLGTGPKPCKGYSA   81 (398)
T ss_pred             cCCCCCcceeEE-ECCEEEEEcccCCCccccceEEEEECC------------------CCcEecccccCCCCCCCCcceE
Confidence            455888899999 999999999998755578999999999                  7899999999999999999999


Q ss_pred             EEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          174 CPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       174 ~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      +++ .++.|+|+++....            ++++|.+++.
T Consensus        82 ~v~-~~~rilv~~~~~~~------------~~~~w~l~~~  108 (398)
T PLN02772         82 VVL-NKDRILVIKKGSAP------------DDSIWFLEVD  108 (398)
T ss_pred             EEE-CCceEEEEeCCCCC------------ccceEEEEcC
Confidence            986 67788998866433            3678887775

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.07  E-value=1.9e-10  Score=67.66  Aligned_cols=43  Identities=28%  Similarity=0.452  Sum_probs=39.1

Q ss_pred             CCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962           38 ARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus        38 ~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ||.+|+++.+ +++|||+||.......++++++||+.+  ++|+++
T Consensus         1 pR~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~   43 (47)
T PF01344_consen    1 PRSGHAAVVV-GNKIYVIGGYDGNNQPTNSVEVYDPET--NTWEEL   43 (47)
T ss_dssp             -BBSEEEEEE-TTEEEEEEEBESTSSBEEEEEEEETTT--TEEEEE
T ss_pred             CCccCEEEEE-CCEEEEEeeecccCceeeeEEEEeCCC--CEEEEc
Confidence            6899999999 589999999976578899999999999  999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13964 Kelch_6: Kelch motif

Probab=99.06  E-value=6e-10  Score=66.44  Aligned_cols=50  Identities=36%  Similarity=0.753  Sum_probs=42.9

Q ss_pred             CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCC
Q 027962           97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR  168 (216)
Q Consensus        97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r  168 (216)
                      +|.+|++++ .+++||++||........+++++||++                  +++|+++.++   |.+|
T Consensus         1 pR~~~s~v~-~~~~iyv~GG~~~~~~~~~~v~~yd~~------------------t~~W~~~~~m---p~pR   50 (50)
T PF13964_consen    1 PRYGHSAVV-VGGKIYVFGGYDNSGKYSNDVERYDPE------------------TNTWEQLPPM---PTPR   50 (50)
T ss_pred             CCccCEEEE-ECCEEEEECCCCCCCCccccEEEEcCC------------------CCcEEECCCC---CCCC
Confidence            688999988 999999999997656789999999999                  7799999765   5555

>PLN02772 guanylate kinase

Probab=99.04  E-value=3.1e-09  Score=88.78  Aligned_cols=90  Identities=22%  Similarity=0.355  Sum_probs=74.7

Q ss_pred             CCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEE
Q 027962           34 PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLI  113 (216)
Q Consensus        34 ~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v  113 (216)
                      -.+.|+..|+++.++ +++|||||........+.+++||..+  .+|..-.     ..+..|.+|.+|+++++.+++|+|
T Consensus        20 ~~~~~~~~~tav~ig-dk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~-----V~G~~P~~r~GhSa~v~~~~rilv   91 (398)
T PLN02772         20 FGVKPKNRETSVTIG-DKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPI-----VLGTGPKPCKGYSAVVLNKDRILV   91 (398)
T ss_pred             ccCCCCCcceeEEEC-CEEEEEcccCCCccccceEEEEECCC--CcEeccc-----ccCCCCCCCCcceEEEECCceEEE
Confidence            345689999999995 79999999865444789999999999  9998765     559999999999999978899999


Q ss_pred             EeCcCCCCCCCCceEEEecCC
Q 027962          114 YGGEDSARRRKDDFWVLDTKA  134 (216)
Q Consensus       114 ~GG~~~~~~~~~~~~~~~~~~  134 (216)
                      +++....   -.++|.+.+.+
T Consensus        92 ~~~~~~~---~~~~w~l~~~t  109 (398)
T PLN02772         92 IKKGSAP---DDSIWFLEVDT  109 (398)
T ss_pred             EeCCCCC---ccceEEEEcCC
Confidence            9876433   37788888774

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.03  E-value=6.7e-10  Score=65.96  Aligned_cols=47  Identities=38%  Similarity=0.740  Sum_probs=40.4

Q ss_pred             CCEEEEEeCcC-CCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEE
Q 027962          108 GGRVLIYGGED-SARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACP  175 (216)
Q Consensus       108 ~~~l~v~GG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~  175 (216)
                      +++||||||++ .....++++|+||+.                  +.+|+++   ++.|.+|.+|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~------------------~~~W~~~---~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLD------------------TNTWTRI---GDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECC------------------CCEEEEC---CCCCCCccceEEEE
Confidence            46899999998 456788999999999                  7799988   55699999999886

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.03  E-value=1e-09  Score=65.18  Aligned_cols=43  Identities=33%  Similarity=0.652  Sum_probs=38.8

Q ss_pred             CCcCceEEEEcCCeEEEEccC--CCCCceeCcEEEEecCCCCccEEEe
Q 027962           38 ARSGHSLTRIGGNRTVLFGGR--GVGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus        38 ~r~~h~~~~~~~~~iyv~GG~--~~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ||.+|+++++ +++||||||+  .......++++.||+++  ++|+.+
T Consensus         1 ~r~~hs~~~~-~~kiyv~GG~~~~~~~~~~~~v~~~d~~t--~~W~~~   45 (49)
T PF07646_consen    1 PRYGHSAVVL-DGKIYVFGGYGTDNGGSSSNDVWVFDTET--NQWTEL   45 (49)
T ss_pred             CccceEEEEE-CCEEEEECCcccCCCCcccceeEEEECCC--CEEeec
Confidence            6899999999 6899999999  44567799999999999  999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13854 Kelch_5: Kelch motif

Probab=98.98  E-value=1.8e-09  Score=61.84  Aligned_cols=40  Identities=35%  Similarity=0.588  Sum_probs=35.4

Q ss_pred             CCCCCcCceEEEEcCCeEEEEccCC-CCCceeCcEEEEecCC
Q 027962           35 SPPARSGHSLTRIGGNRTVLFGGRG-VGYEVLNDVWFLDVYE   75 (216)
Q Consensus        35 ~p~~r~~h~~~~~~~~~iyv~GG~~-~~~~~~~~~~~~d~~~   75 (216)
                      +|.||.+|+++.+ +++||||||.. .....++++|+||+.+
T Consensus         1 ~P~~R~~hs~~~~-~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVV-GNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEE-CCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4789999999999 58999999997 3678899999999876

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.97  E-value=1.6e-08  Score=79.82  Aligned_cols=118  Identities=17%  Similarity=0.287  Sum_probs=80.1

Q ss_pred             EEEEccCCCCCceeCcEEEEecCCCC-ccEEEeccCcCCCCCCCCCCCCCceEEEE-eC--CEEEEEeCcCCC-------
Q 027962           52 TVLFGGRGVGYEVLNDVWFLDVYEGF-FKWVQIPYELQNIPAGFSLPRVGHSATLI-LG--GRVLIYGGEDSA-------  120 (216)
Q Consensus        52 iyv~GG~~~~~~~~~~~~~~d~~~~~-~~W~~~~~~~~~~~~~~p~~r~~~~~~~~-~~--~~l~v~GG~~~~-------  120 (216)
                      .++.||++.+.+..+++|.+.+.+.. ++=..+.+.+....++.|.+|++|++.++ ..  ...++|||+.-.       
T Consensus        41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT  120 (337)
T PF03089_consen   41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT  120 (337)
T ss_pred             EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence            67789999888999999999776511 22222333344567999999999999886 22  348999998531       


Q ss_pred             ------CCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccC
Q 027962          121 ------RRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVD  190 (216)
Q Consensus       121 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~  190 (216)
                            .....+++.+|++                  -..+. .-..++...+.+.|.+.+  .++.+|++||+.-
T Consensus       121 enWNsVvDC~P~VfLiDle------------------FGC~t-ah~lpEl~dG~SFHvsla--r~D~VYilGGHsl  175 (337)
T PF03089_consen  121 ENWNSVVDCPPQVFLIDLE------------------FGCCT-AHTLPELQDGQSFHVSLA--RNDCVYILGGHSL  175 (337)
T ss_pred             hhcceeccCCCeEEEEecc------------------ccccc-cccchhhcCCeEEEEEEe--cCceEEEEccEEc
Confidence                  1123456666665                  43333 233344456778888877  7899999999953

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.94  E-value=6.8e-10  Score=65.90  Aligned_cols=46  Identities=39%  Similarity=0.822  Sum_probs=30.0

Q ss_pred             CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeec
Q 027962           97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRA  160 (216)
Q Consensus        97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  160 (216)
                      ||++|+++.+.+++||||||++.....++++++||++                  +++|+++.+
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~------------------~~~W~~~~~   46 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIE------------------TNTWTRLPS   46 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETT------------------TTEEEE--S
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECC------------------CCEEEECCC
Confidence            6999999985579999999998766789999999999                  779988844

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.90  E-value=4.5e-09  Score=62.35  Aligned_cols=46  Identities=41%  Similarity=0.894  Sum_probs=39.3

Q ss_pred             CCCCceEEEEeCCEEEEEeCc--CCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC
Q 027962           97 PRVGHSATLILGGRVLIYGGE--DSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE  161 (216)
Q Consensus        97 ~r~~~~~~~~~~~~l~v~GG~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  161 (216)
                      +|++|++++ .+++||||||+  .......+++++||++                  +++|+.++++
T Consensus         1 ~r~~hs~~~-~~~kiyv~GG~~~~~~~~~~~~v~~~d~~------------------t~~W~~~~~~   48 (49)
T PF07646_consen    1 PRYGHSAVV-LDGKIYVFGGYGTDNGGSSSNDVWVFDTE------------------TNQWTELSPM   48 (49)
T ss_pred             CccceEEEE-ECCEEEEECCcccCCCCcccceeEEEECC------------------CCEEeecCCC
Confidence            689999998 99999999999  4456778999999999                  6788887664

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13854 Kelch_5: Kelch motif

Probab=98.83  E-value=9.9e-09  Score=58.77  Aligned_cols=39  Identities=36%  Similarity=0.718  Sum_probs=35.3

Q ss_pred             CCCCCCCceEEEEeCCEEEEEeCcC-CCCCCCCceEEEecC
Q 027962           94 FSLPRVGHSATLILGGRVLIYGGED-SARRRKDDFWVLDTK  133 (216)
Q Consensus        94 ~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~~~~~  133 (216)
                      +|.+|++|++++ .+++||||||.+ ......+|+|++|+.
T Consensus         1 ~P~~R~~hs~~~-~~~~iyi~GG~~~~~~~~~~d~~~l~l~   40 (42)
T PF13854_consen    1 IPSPRYGHSAVV-VGNNIYIFGGYSGNNNSYSNDLYVLDLP   40 (42)
T ss_pred             CCCCccceEEEE-ECCEEEEEcCccCCCCCEECcEEEEECC
Confidence            488999999999 899999999998 367789999999987

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.75  E-value=1.1e-08  Score=59.93  Aligned_cols=46  Identities=30%  Similarity=0.649  Sum_probs=39.6

Q ss_pred             CCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecC
Q 027962           97 PRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAE  161 (216)
Q Consensus        97 ~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  161 (216)
                      +|.+|++++ .+++||++||.+......+++++||+.                  +++|++++++
T Consensus         1 pR~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~yd~~------------------~~~W~~~~~m   46 (47)
T PF01344_consen    1 PRSGHAAVV-VGNKIYVIGGYDGNNQPTNSVEVYDPE------------------TNTWEELPPM   46 (47)
T ss_dssp             -BBSEEEEE-ETTEEEEEEEBESTSSBEEEEEEEETT------------------TTEEEEEEEE
T ss_pred             CCccCEEEE-ECCEEEEEeeecccCceeeeEEEEeCC------------------CCEEEEcCCC
Confidence            588899988 999999999998767788999999999                  7788888764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>smart00612 Kelch Kelch domain

Probab=98.59  E-value=1.3e-07  Score=55.03  Aligned_cols=44  Identities=27%  Similarity=0.493  Sum_probs=38.5

Q ss_pred             eEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEE
Q 027962           51 RTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATL  105 (216)
Q Consensus        51 ~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~  105 (216)
                      +||++||.. .....+++++||+.+  ++|+.+        .++|.+|..|++++
T Consensus         1 ~iyv~GG~~-~~~~~~~v~~yd~~~--~~W~~~--------~~~~~~r~~~~~~~   44 (47)
T smart00612        1 KIYVVGGFD-GGQRLKSVEVYDPET--NKWTPL--------PSMPTPRSGHGVAV   44 (47)
T ss_pred             CEEEEeCCC-CCceeeeEEEECCCC--CeEccC--------CCCCCccccceEEE
Confidence            489999985 356689999999999  999998        78999999998877

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.46  E-value=1.1e-05  Score=63.96  Aligned_cols=115  Identities=21%  Similarity=0.268  Sum_probs=74.9

Q ss_pred             cccEEEEeccCCcc----ccceEEcc-cCCCCCCCcCceEEEE---cCCeEEEEccCCC-------------CCceeCcE
Q 027962           10 LGDTWVLELSENFC----FGSWQQLV-THPSPPARSGHSLTRI---GGNRTVLFGGRGV-------------GYEVLNDV   68 (216)
Q Consensus        10 ~~~~~~~d~~~~~~----~~~W~~~~-~~~~p~~r~~h~~~~~---~~~~iyv~GG~~~-------------~~~~~~~~   68 (216)
                      .+++|++...+..+    +....... .++.|.+|++|++-++   ++.-.++|||+.-             --++...+
T Consensus        54 S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~V  133 (337)
T PF03089_consen   54 SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQV  133 (337)
T ss_pred             ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeE
Confidence            56788877664321    23333333 6899999999998776   2234899999820             11245668


Q ss_pred             EEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCC-CCCCCCceEEEecC
Q 027962           69 WFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS-ARRRKDDFWVLDTK  133 (216)
Q Consensus        69 ~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~~~~~  133 (216)
                      +++|++-  ...+.-      .-+...-+...|.+.. .++.+|++||..- .+.+...++++.++
T Consensus       134 fLiDleF--GC~tah------~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVd  190 (337)
T PF03089_consen  134 FLIDLEF--GCCTAH------TLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVD  190 (337)
T ss_pred             EEEeccc--cccccc------cchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEe
Confidence            8888876  544433      1134455667787777 9999999999853 24456677776554

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>smart00612 Kelch Kelch domain

Probab=98.13  E-value=3.8e-06  Score=48.66  Aligned_cols=45  Identities=29%  Similarity=0.408  Sum_probs=35.8

Q ss_pred             EEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEe
Q 027962          110 RVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPD  176 (216)
Q Consensus       110 ~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~  176 (216)
                      +||++||.+. ....+++++||+.                  +++|+++..+   +.+|..|+++++
T Consensus         1 ~iyv~GG~~~-~~~~~~v~~yd~~------------------~~~W~~~~~~---~~~r~~~~~~~~   45 (47)
T smart00612        1 KIYVVGGFDG-GQRLKSVEVYDPE------------------TNKWTPLPSM---PTPRSGHGVAVI   45 (47)
T ss_pred             CEEEEeCCCC-CceeeeEEEECCC------------------CCeEccCCCC---CCccccceEEEe
Confidence            4899999864 4567889999988                  7799988754   788988887763

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.41  E-value=0.0018  Score=51.32  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=61.2

Q ss_pred             EEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCC--CCccEEEeccCcCCC
Q 027962           13 TWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYE--GFFKWVQIPYELQNI   90 (216)
Q Consensus        13 ~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~~~W~~~~~~~~~~   90 (216)
                      -..||+.++    +++.+.   ...-..-.+...+.++++++.||... .  .+.+-.|++..  ....|.+..      
T Consensus        48 s~~yD~~tn----~~rpl~---v~td~FCSgg~~L~dG~ll~tGG~~~-G--~~~ir~~~p~~~~~~~~w~e~~------  111 (243)
T PF07250_consen   48 SVEYDPNTN----TFRPLT---VQTDTFCSGGAFLPDGRLLQTGGDND-G--NKAIRIFTPCTSDGTCDWTESP------  111 (243)
T ss_pred             EEEEecCCC----cEEecc---CCCCCcccCcCCCCCCCEEEeCCCCc-c--ccceEEEecCCCCCCCCceECc------
Confidence            345899997    888764   22222223334455789999999843 2  23455666531  125798874      


Q ss_pred             CCCCCCCCCCceEEEEeCCEEEEEeCcC
Q 027962           91 PAGFSLPRVGHSATLILGGRVLIYGGED  118 (216)
Q Consensus        91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~  118 (216)
                       ..|..+|.+.++..+.+++++|+||..
T Consensus       112 -~~m~~~RWYpT~~~L~DG~vlIvGG~~  138 (243)
T PF07250_consen  112 -NDMQSGRWYPTATTLPDGRVLIVGGSN  138 (243)
T ss_pred             -ccccCCCccccceECCCCCEEEEeCcC
Confidence             458999999999888999999999986

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.38  E-value=0.0072  Score=47.94  Aligned_cols=104  Identities=12%  Similarity=0.094  Sum_probs=62.5

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecC-C---CCccEEEecc
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVY-E---GFFKWVQIPY   85 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~-~---~~~~W~~~~~   85 (216)
                      .+.+-.|++.+....-.|.... ..+..+|.+.+++.+.+++++|+||...      ..+.|-+. .   ....|..+. 
T Consensus        90 ~~~ir~~~p~~~~~~~~w~e~~-~~m~~~RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~-  161 (243)
T PF07250_consen   90 NKAIRIFTPCTSDGTCDWTESP-NDMQSGRWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLS-  161 (243)
T ss_pred             ccceEEEecCCCCCCCCceECc-ccccCCCccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecch-
Confidence            4567778876522234787764 3488999999999999999999999952      11222221 1   002222221 


Q ss_pred             CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecC
Q 027962           86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTK  133 (216)
Q Consensus        86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~  133 (216)
                         ......+..-|-+...+ .+++|++|+...        ..+||..
T Consensus       162 ---~~~~~~~~nlYP~~~ll-PdG~lFi~an~~--------s~i~d~~  197 (243)
T PF07250_consen  162 ---QTSDTLPNNLYPFVHLL-PDGNLFIFANRG--------SIIYDYK  197 (243)
T ss_pred             ---hhhccCccccCceEEEc-CCCCEEEEEcCC--------cEEEeCC
Confidence               01112344445444444 999999998863        2677776

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=96.17  E-value=0.38  Score=37.62  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEE-eccCcCC
Q 027962           11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ-IPYELQN   89 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~-~~~~~~~   89 (216)
                      ..+.+|+..++    +|+.+.. .++........+.+ ++.+|-+.-... ......|..||+.+  .+|+. +.     
T Consensus        70 ~~~~Vys~~~~----~Wr~~~~-~~~~~~~~~~~v~~-~G~lyw~~~~~~-~~~~~~IvsFDl~~--E~f~~~i~-----  135 (230)
T TIGR01640        70 SEHQVYTLGSN----SWRTIEC-SPPHHPLKSRGVCI-NGVLYYLAYTLK-TNPDYFIVSFDVSS--ERFKEFIP-----  135 (230)
T ss_pred             ccEEEEEeCCC----Ccccccc-CCCCccccCCeEEE-CCEEEEEEEECC-CCCcEEEEEEEccc--ceEeeeee-----
Confidence            46788999996    9999852 12211122236677 578888764421 11112689999999  99995 63     


Q ss_pred             CCCCCCCCCC----CceEEEEeCCEEEEEeCcCCCCCCCCceEEEe
Q 027962           90 IPAGFSLPRV----GHSATLILGGRVLIYGGEDSARRRKDDFWVLD  131 (216)
Q Consensus        90 ~~~~~p~~r~----~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  131 (216)
                          +|..+.    ...... .+++|.+.......  ..-++|+++
T Consensus       136 ----~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~--~~~~IWvl~  174 (230)
T TIGR01640       136 ----LPCGNSDSVDYLSLIN-YKGKLAVLKQKKDT--NNFDLWVLN  174 (230)
T ss_pred             ----cCccccccccceEEEE-ECCEEEEEEecCCC--CcEEEEEEC
Confidence                233221    222333 67888776553221  124677775

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.77  E-value=0.57  Score=38.15  Aligned_cols=108  Identities=9%  Similarity=0.060  Sum_probs=61.9

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      .+..+..||..+.    +|..+..+  -.... .++...+++++|+.|-.+........+..||.++  .+|+.+...  
T Consensus        14 ~C~~lC~yd~~~~----qW~~~g~~--i~G~V-~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~--~~w~~~~~~--   82 (281)
T PF12768_consen   14 PCPGLCLYDTDNS----QWSSPGNG--ISGTV-TDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN--QTWSSLGGG--   82 (281)
T ss_pred             CCCEEEEEECCCC----EeecCCCC--ceEEE-EEEEEecCCEEEEEEeeEECCCCceeEEEEecCC--CeeeecCCc--
Confidence            4778889999996    99987432  11221 3344445667888876643332456688999999  999988400  


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEe
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLD  131 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  131 (216)
                       .....|.+.............+++.|.. ..+  ..-+..||
T Consensus        83 -~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~d  121 (281)
T PF12768_consen   83 -SSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYD  121 (281)
T ss_pred             -ccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEc
Confidence             0013455542222222144567776654 211  33455565

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=93.21  E-value=3.2  Score=32.34  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=55.8

Q ss_pred             ccEEEEeccCCccccceEEcccCCCCCC-CcCc-eEEEE----cCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962           11 GDTWVLELSENFCFGSWQQLVTHPSPPA-RSGH-SLTRI----GGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP   84 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~-r~~h-~~~~~----~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~   84 (216)
                      ..+.+.||.|.    +|..++..+.+.. ...+ ....+    ++=+++.+.... .......+..|++.+  +.|+.+.
T Consensus        14 ~~~~V~NP~T~----~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~--~~Wr~~~   86 (230)
T TIGR01640        14 KRLVVWNPSTG----QSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGS--NSWRTIE   86 (230)
T ss_pred             CcEEEECCCCC----CEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCC--CCccccc
Confidence            46788888885    9998852111101 1111 12222    111344443321 111234678999999  9999983


Q ss_pred             cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962           85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI  135 (216)
Q Consensus        85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~  135 (216)
                             ...+........+. .++.+|-+.-... ......+..||+.++
T Consensus        87 -------~~~~~~~~~~~~v~-~~G~lyw~~~~~~-~~~~~~IvsFDl~~E  128 (230)
T TIGR01640        87 -------CSPPHHPLKSRGVC-INGVLYYLAYTLK-TNPDYFIVSFDVSSE  128 (230)
T ss_pred             -------cCCCCccccCCeEE-ECCEEEEEEEECC-CCCcEEEEEEEcccc
Confidence                   11222111222444 7887777764321 111236889999943

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.33  E-value=2.5  Score=34.43  Aligned_cols=92  Identities=14%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             eeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCce--EEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc
Q 027962           64 VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHS--ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ  141 (216)
Q Consensus        64 ~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  141 (216)
                      .-+.+-.||...  .+|+...        .-   ..+..  .....+++||+.|-....+.....+..||++        
T Consensus        14 ~C~~lC~yd~~~--~qW~~~g--------~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~--------   72 (281)
T PF12768_consen   14 PCPGLCLYDTDN--SQWSSPG--------NG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFK--------   72 (281)
T ss_pred             CCCEEEEEECCC--CEeecCC--------CC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecC--------
Confidence            357789999999  9999883        22   22222  2222577888877554434346678899998        


Q ss_pred             cccccccCcccCCceEeecC--CCCCCCCcceeEEEe-cCCCEEEEEccc
Q 027962          142 QSMLDSRGLLLNMWKRLRAE--GYKPNCRSFHRACPD-YSGRYLYVFGGM  188 (216)
Q Consensus       142 ~~~~~~~~~~~~~W~~~~~~--~~~~~~r~~h~~~~~-~~~~~l~i~GG~  188 (216)
                                +.+|..+...  ...|.+-  .+..+. .....+++.|..
T Consensus        73 ----------~~~w~~~~~~~s~~ipgpv--~a~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   73 ----------NQTWSSLGGGSSNSIPGPV--TALTFISNDGSNFWVAGRS  110 (281)
T ss_pred             ----------CCeeeecCCcccccCCCcE--EEEEeeccCCceEEEecee
Confidence                      6688877652  1233332  223222 123466766654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=85.28  E-value=27  Score=31.21  Aligned_cols=74  Identities=19%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCC---CCCCCceEEEEeCCEEEEEeCcCC
Q 027962           43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFS---LPRVGHSATLILGGRVLIYGGEDS  119 (216)
Q Consensus        43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p---~~r~~~~~~~~~~~~l~v~GG~~~  119 (216)
                      +-++. ++.+|+....       +.++.+|.++++..|+.-...   .....+   ........++ .++++|+ +..  
T Consensus        64 tPvv~-~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~---~~~~~~~~~~~~~~rg~av-~~~~v~v-~t~--  128 (527)
T TIGR03075        64 QPLVV-DGVMYVTTSY-------SRVYALDAKTGKELWKYDPKL---PDDVIPVMCCDVVNRGVAL-YDGKVFF-GTL--  128 (527)
T ss_pred             CCEEE-CCEEEEECCC-------CcEEEEECCCCceeeEecCCC---CcccccccccccccccceE-ECCEEEE-EcC--
Confidence            34455 5788885432       258999999888889865200   000001   1111122334 6777776 222  


Q ss_pred             CCCCCCceEEEecCCC
Q 027962          120 ARRRKDDFWVLDTKAI  135 (216)
Q Consensus       120 ~~~~~~~~~~~~~~~~  135 (216)
                          ...+.++|.++-
T Consensus       129 ----dg~l~ALDa~TG  140 (527)
T TIGR03075       129 ----DARLVALDAKTG  140 (527)
T ss_pred             ----CCEEEEEECCCC
Confidence                246899998876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=84.92  E-value=11  Score=26.46  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=44.6

Q ss_pred             cccEEEEeccCCccccceEEcccC-CCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEe-cCCCCccEEEec
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTH-PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLD-VYEGFFKWVQIP   84 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~-~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d-~~~~~~~W~~~~   84 (216)
                      .+.+-.||+++.    +|+.+..+ ..........++.+ ++++.++.-........-++|.++ ..+  .+|++..
T Consensus        19 ~~~IvsFDv~~E----~f~~i~~P~~~~~~~~~~~L~~~-~G~L~~v~~~~~~~~~~~~iWvLeD~~k--~~Wsk~~   88 (129)
T PF08268_consen   19 NNVIVSFDVRSE----KFRFIKLPEDPYSSDCSSTLIEY-KGKLALVSYNDQGEPDSIDIWVLEDYEK--QEWSKKH   88 (129)
T ss_pred             CcEEEEEEcCCc----eEEEEEeeeeeccccCccEEEEe-CCeEEEEEecCCCCcceEEEEEeecccc--ceEEEEE
Confidence            467888999997    99888531 23344566677888 578777654422222345788885 556  8899774

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF15525 DUF4652: Domain of unknown function (DUF4652)

Probab=82.28  E-value=15  Score=28.02  Aligned_cols=68  Identities=15%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeE-EEEccCCCCCceeCcEEEEecCCCCccEEEe
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRT-VLFGGRGVGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~i-yv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ..++|++|..++    .|.++...+-+...+.=-+..+++.+| +++|-.-..-.--..+|.|++.+  ..-+.+
T Consensus        87 iGkIYIkn~~~~----~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~t--g~~~~l  155 (200)
T PF15525_consen   87 IGKIYIKNLNNN----NWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNT--GNLTEL  155 (200)
T ss_pred             ceeEEEEecCCC----ceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccC--CceeEe
Confidence            679999999997    776654222221112224566755564 44553211223345699999999  777777

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=81.42  E-value=16  Score=25.66  Aligned_cols=75  Identities=17%  Similarity=0.153  Sum_probs=42.5

Q ss_pred             EEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCC
Q 027962           46 RIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKD  125 (216)
Q Consensus        46 ~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~  125 (216)
                      .+ |+-+|...-.  .....+.+..||+.+  .+|+.+.     .+............+. .+|+|-++.-........-
T Consensus         3 ci-nGvly~~a~~--~~~~~~~IvsFDv~~--E~f~~i~-----~P~~~~~~~~~~~L~~-~~G~L~~v~~~~~~~~~~~   71 (129)
T PF08268_consen    3 CI-NGVLYWLAWS--EDSDNNVIVSFDVRS--EKFRFIK-----LPEDPYSSDCSSTLIE-YKGKLALVSYNDQGEPDSI   71 (129)
T ss_pred             EE-CcEEEeEEEE--CCCCCcEEEEEEcCC--ceEEEEE-----eeeeeccccCccEEEE-eCCeEEEEEecCCCCcceE
Confidence            45 4555555444  223356789999999  9999985     1111223333334444 8888777654332212345


Q ss_pred             ceEEEe
Q 027962          126 DFWVLD  131 (216)
Q Consensus       126 ~~~~~~  131 (216)
                      ++|+++
T Consensus        72 ~iWvLe   77 (129)
T PF08268_consen   72 DIWVLE   77 (129)
T ss_pred             EEEEee
Confidence            788874

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=80.43  E-value=33  Score=28.74  Aligned_cols=129  Identities=11%  Similarity=0.108  Sum_probs=66.9

Q ss_pred             cEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCce----eCcEEEE--ec------CCCCcc
Q 027962           12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV----LNDVWFL--DV------YEGFFK   79 (216)
Q Consensus        12 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~--d~------~~~~~~   79 (216)
                      .+.+||+++.    .-...  ..++.+...-.++.++ ++||+.-........    ....+.+  +.      ....-.
T Consensus        87 ~t~vyDt~t~----av~~~--P~l~~pk~~pisv~VG-~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~  159 (342)
T PF07893_consen   87 RTLVYDTDTR----AVATG--PRLHSPKRCPISVSVG-DKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWS  159 (342)
T ss_pred             CeEEEECCCC----eEecc--CCCCCCCcceEEEEeC-CeEEEeeccCccccccCccceeEEEeccccccccccCCCcce
Confidence            4778999885    33332  2244445555777785 579999776321110    0133343  21      121134


Q ss_pred             EEEeccCcCCCCCCCCCCCCC------ceE-EEEeCCEEEE-EeCcCCCCCCCCceEEEecCCCCcccccc-----cccc
Q 027962           80 WVQIPYELQNIPAGFSLPRVG------HSA-TLILGGRVLI-YGGEDSARRRKDDFWVLDTKAIPFTSVQQ-----SMLD  146 (216)
Q Consensus        80 W~~~~~~~~~~~~~~p~~r~~------~~~-~~~~~~~l~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  146 (216)
                      |+.+        +.+|..+..      -++ ++..+..|+| .-|..      ...+.||+.+.+|...-.     .+-=
T Consensus       160 W~~L--------P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~GdW~LPF~G~a  225 (342)
T PF07893_consen  160 WRSL--------PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGDWMLPFHGQA  225 (342)
T ss_pred             EEcC--------CCCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccceecCcCCcc
Confidence            6666        334444332      122 2213666777 33321      347999999887774431     2344


Q ss_pred             ccCcccCCceEeecC
Q 027962          147 SRGLLLNMWKRLRAE  161 (216)
Q Consensus       147 ~~~~~~~~W~~~~~~  161 (216)
                      .|++.-+.|--+...
T Consensus       226 ~y~~el~~W~Gls~~  240 (342)
T PF07893_consen  226 EYVPELDLWFGLSSD  240 (342)
T ss_pred             EECCCcCeEEEeccC
Confidence            556666666655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	3e-18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	7e-15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-09
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-07
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-04

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score =  105 bits (264), Expect = 1e-26
 Identities = 35/197 (17%), Positives = 61/197 (30%), Gaps = 34/197 (17%)

Query: 4   GLYGLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVL-FGGRGVGY 62
           G    R+ +   L +  +       ++ +   P AR  H+ T I  N  +L  GGR   +
Sbjct: 405 GSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH 464

Query: 63  EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR 122
           + L+D W  D+     +W  I     ++       R  HSA  +  G VLI GG      
Sbjct: 465 QGLSDNWIFDMKTR--EWSMIK----SLSH----TRFRHSACSLPDGNVLILGGVTEG-- 512

Query: 123 RKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRAC-PDYSGRY 181
                 + +                      ++K +  +               D   + 
Sbjct: 513 --PAMLLYNVTE------------------EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552

Query: 182 LYVFGGMVDGLVQPADT 198
             + GG        +D 
Sbjct: 553 GIILGGGFMDQTTVSDK 569

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 81.7 bits (201), Expect = 3e-18
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 6/113 (5%)

Query: 7   GLRLGDTWVLELSENFCFGSWQQLVTHPSPP-ARSGHSLTRIGGNRTVLFGGRGVG--YE 63
                   + +            +     P   R G  +  I   + ++ GG      ++
Sbjct: 564 TTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFD 623

Query: 64  VLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGG 116
             N +  LD          IP   + I    SL   G S      G + I GG
Sbjct: 624 RTNSIISLDP--LSETLTSIPIS-RRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 77.1 bits (189), Expect = 1e-16
 Identities = 24/195 (12%), Positives = 49/195 (25%), Gaps = 29/195 (14%)

Query: 10  LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVW 69
           L D W+ ++        W           R  HS   +     ++ GG   G      + 
Sbjct: 467 LSDNWIFDMKTR----EWSM--IKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAML 516

Query: 70  FLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWV 129
             +V E    +  +  + +           G     +    +++ GG        D   +
Sbjct: 517 LYNVTEE--IFKDVTPKDEFFQNSLV--SAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572

Query: 130 LDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMV 189
               A   T                   ++   +    R   +       + L + GG  
Sbjct: 573 FKYDAENAT--------------EPITVIKKLQHPLFQRYGSQIKYITPRK-LLIVGGTS 617

Query: 190 DGLVQPADTSGLRFD 204
              +     S +  D
Sbjct: 618 PSGLFDRTNSIISLD 632

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 71.7 bits (175), Expect = 7e-15
 Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 28/183 (15%)

Query: 11  GDTWVLELSENFCFGSWQQLVT----HPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLN 66
               +  ++E      ++ +        +    +G     +     +L GG      V +
Sbjct: 513 PAMLLYNVTEE----IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSD 568

Query: 67  DVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR--RK 124
                              +    P      R G     I   ++LI GG   +    R 
Sbjct: 569 KAIIFKYDAENATEPITVIKKLQHPL---FQRYGSQIKYITPRKLLIVGGTSPSGLFDRT 625

Query: 125 DDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYV 184
           +    LD  +   TS+  S               R         +         G  +++
Sbjct: 626 NSIISLDPLSETLTSIPISR--------------RIWEDHSLMLAGFSLVSTSMGT-IHI 670

Query: 185 FGG 187
            GG
Sbjct: 671 IGG 673

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 30/190 (15%), Positives = 54/190 (28%), Gaps = 22/190 (11%)

Query: 25  GSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP 84
             W      P     +G ++   G ++T L  G        + V+ LD      KW ++ 
Sbjct: 178 QQWSYAGESP-WYGTAGAAVVNKG-DKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA 235

Query: 85  YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRK---DDFWVLDTKAIPFTSVQ 141
                 P        G  A  I    ++  GG      R+   +             S  
Sbjct: 236 ------PVSSPDGVAGGFAG-ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTD 288

Query: 142 QSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGL 201
             +  +       W +    G     R++  + P      L + GG   G     D+  +
Sbjct: 289 IHLWHN-----GKWDKS---GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLI 338

Query: 202 RFDGRLLLVE 211
                 + V+
Sbjct: 339 TVKDNKVTVQ 348

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 24/159 (15%), Positives = 43/159 (27%), Gaps = 40/159 (25%)

Query: 34  PSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAG 93
            +P      +          +  G           + LD      KW  +       P G
Sbjct: 5   ETPVPFKSGTGAIDND-TVYIGLGSAG-----TAWYKLDTQAKDKKWTALA----AFPGG 54

Query: 94  FSLPRVGHSATLILGGRVLIYGG----EDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRG 149
              PR   ++   + G + ++GG     +   +  +D    + K                
Sbjct: 55  ---PRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK---------------- 94

Query: 150 LLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGM 188
              N W +L +    P   + H           YV GG+
Sbjct: 95  --TNSWVKLMSH--APMGMAGHVTFV--HNGKAYVTGGV 127

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 31/213 (14%), Positives = 54/213 (25%), Gaps = 39/213 (18%)

Query: 12  DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYE----VLND 67
             + L+         W  L   P  P R   +   I G    +FGG G   E    V ND
Sbjct: 32  AWYKLDT--QAKDKKWTALAAFPGGP-RDQATSAFIDG-NLYVFGGIGKNSEGLTQVFND 87

Query: 68  VWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDF 127
           V   +       WV++           +   +    T +  G+  + GG +        F
Sbjct: 88  VHKYNPKTN--SWVKL--------MSHAPMGMAGHVTFVHNGKAYVTGGVNQN-IFNGYF 136

Query: 128 WVLDTKAIPFTSVQQSMLDSRGLLL----------------NMWKRLRAEGYKPNCRSFH 171
             L+      T++ +                            W       +     +  
Sbjct: 137 EDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYG--TAGA 194

Query: 172 RACPDYSGRYLYVFGGMVDGLVQPADTSGLRFD 204
                  G   ++  G     ++      L F 
Sbjct: 195 AVVNK--GDKTWLINGEAKPGLRTDAVFELDFT 225

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 31/211 (14%), Positives = 48/211 (22%), Gaps = 62/211 (29%)

Query: 25  GSWQQLVTHPSPPARSGHSLTRIGG--------------------------------NRT 52
            SW +L++H  P   +GH      G                                   
Sbjct: 96  NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA 154

Query: 53  VLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVL 112
             F  +   Y     +   D      +W          P        G +     G +  
Sbjct: 155 HYFDKKAEDYFFNKFLLSFDPSTQ--QWSYAG----ESPW---YGTAGAAVV-NKGDKTW 204

Query: 113 IYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHR 172
           +  GE     R D  + LD                       W +L A    P+  +   
Sbjct: 205 LINGEAKPGLRTDAVFELDFTGNNLK----------------WNKL-APVSSPDGVAGGF 247

Query: 173 ACPDYSGRYLYVFGGMVDGLVQPADTSGLRF 203
           A    S   L   GG      +    +G  +
Sbjct: 248 AG--ISNDSLIFAGGAGFKGSRENYQNGKNY 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.95
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.95
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.95
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.95
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.94
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.93
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.92
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.92
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.91
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.89
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.69
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	90.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	86.15
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	83.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	80.71

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.95  E-value=3.5e-27  Score=192.51  Aligned_cols=181  Identities=20%  Similarity=0.244  Sum_probs=148.3

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCC--CCCceeCcEEEEecCCCCccEEEeccCc
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG--VGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~--~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      .+++++||+.++    +|+++  .++|.+|.+|+++.+ +++||++||..  ......+++++||+.+  ++|+++    
T Consensus        66 ~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~----  132 (315)
T 4asc_A           66 SAYFLQFDHLDS----EWLGM--PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLS--FKWGES----  132 (315)
T ss_dssp             EEEEEEEETTTT----EEEEC--CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTT--TEEEEC----
T ss_pred             ccceEEecCCCC----eEEEC--CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCC--CcEeEC----
Confidence            567999999997    99988  468899999999999 58999999974  2356789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-----------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-----------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------  143 (216)
                          .++|.+|.+|++++ .+++||++||.+......+++++||+.+.+|...+. +                       
T Consensus       133 ----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  207 (315)
T 4asc_A          133 ----DPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTD  207 (315)
T ss_dssp             ----CCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECS
T ss_pred             ----CCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCC
Confidence                67999999999999 999999999996566778999999999999984431 1                       


Q ss_pred             -----cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          144 -----MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       144 -----~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                           .+.+||+.+++|+.+...   |.+|..|++++  .+++|||+||........ ........+++++||+..
T Consensus       208 ~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~-~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          208 TGLTSSAEVYSITDNKWAPFEAF---PQERSSLSLVS--LVGTLYAIGGFATLETES-GELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             SSEEEEEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEEEEEEEEECTT-SCEEEEEEEEEEEEETTT
T ss_pred             CCccceEEEEECCCCeEEECCCC---CCcccceeEEE--ECCEEEEECCccccCcCC-ccccccccCcEEEecCCC
Confidence                 178999999999999754   78999998888  488999999985321111 111122568999999863

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.95  E-value=9.2e-27  Score=189.11  Aligned_cols=173  Identities=17%  Similarity=0.217  Sum_probs=146.4

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++++++||+.++    +|++++  ++|.+|.+|+++.+ +++||++||.......++++++||+.+  ++|+.+    
T Consensus        67 ~~~~~~~~~d~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~--~~W~~~----  133 (306)
T 3ii7_A           67 FPIKRMDCYNVVKD----SWYSKL--GPPTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRT--ESWHTK----  133 (306)
T ss_dssp             SBCCEEEEEETTTT----EEEEEE--CCSSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTT--TEEEEE----
T ss_pred             CCcceEEEEeCCCC----eEEECC--CCCccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCC--CceEeC----
Confidence            45899999999997    999984  68899999999999 689999999964666789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCC---CCceEEEecCCCCcccccc-c--------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRR---KDDFWVLDTKAIPFTSVQQ-S--------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~---~~~~~~~~~~~~~~~~~~~-~--------------------  143 (216)
                          +++|.+|.+|+++. .+++||++||.+.....   .+++++||+.+.+|...+. +                    
T Consensus       134 ----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  208 (306)
T 3ii7_A          134 ----PSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG  208 (306)
T ss_dssp             ----CCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             ----CCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeC
Confidence                78999999999998 89999999998654332   8999999999999984432 1                    


Q ss_pred             --------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 --------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 --------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                              .+.+||+.+++|+.+...   |.+|..|+++++  +++|||+||.....          ..++++.||+.
T Consensus       209 ~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~--~~~i~v~GG~~~~~----------~~~~~~~yd~~  271 (306)
T 3ii7_A          209 QNGLGGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAV--GSIVYVLAGFQGVG----------RLGHILEYNTE  271 (306)
T ss_dssp             EETTEEBCCEEEEETTTTEEEECCCC---SCCBSCCEEEEE--TTEEEEEECBCSSS----------BCCEEEEEETT
T ss_pred             CCCCCCCceEEEeeCCCCcEEECCCC---CCCccceeEEEE--CCEEEEEeCcCCCe----------eeeeEEEEcCC
Confidence                    178999999999999654   789999988884  88999999985332          45688888876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.95  E-value=6.1e-27  Score=190.17  Aligned_cols=169  Identities=14%  Similarity=0.146  Sum_probs=145.0

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN   89 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~   89 (216)
                      ++++++||++++    +|+++  .++|.+|.+|+++.+ +++||++||..  ...++++++||+.+  ++|+.+      
T Consensus        23 ~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~--~~~~~~~~~~d~~~--~~W~~~------   85 (306)
T 3ii7_A           23 PQSCRYFNPKDY----SWTDI--RCPFEKRRDAACVFW-DNVVYILGGSQ--LFPIKRMDCYNVVK--DSWYSK------   85 (306)
T ss_dssp             TTSEEEEETTTT----EEEEC--CCCSCCCBSCEEEEE-TTEEEEECCBS--SSBCCEEEEEETTT--TEEEEE------
T ss_pred             CceEEEecCCCC----CEecC--CCCCcccceeEEEEE-CCEEEEEeCCC--CCCcceEEEEeCCC--CeEEEC------
Confidence            889999999997    99998  468899999999999 58999999995  56789999999999  999999      


Q ss_pred             CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-------------------------
Q 027962           90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-------------------------  143 (216)
Q Consensus        90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------------  143 (216)
                        .++|.+|.+|++++ .+++||++||.+......+++++||+.+.+|...+. +                         
T Consensus        86 --~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  162 (306)
T 3ii7_A           86 --LGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN  162 (306)
T ss_dssp             --ECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCT
T ss_pred             --CCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCC
Confidence              67899999999998 899999999997556678999999999999974431 0                         


Q ss_pred             -------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 -------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 -------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                             .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       163 ~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~----------~~~~~~~yd~~  224 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATETWTELCPM---IEARKNHGLVF--VKDKIFAVGGQNGLG----------GLDNVEYYDIK  224 (306)
T ss_dssp             TTCEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCEETTE----------EBCCEEEEETT
T ss_pred             CcccccceEEEeCCCCCeEEECCCc---cchhhcceEEE--ECCEEEEEeCCCCCC----------CCceEEEeeCC
Confidence                   056899999999999754   78899999988  488999999985431          45688888876

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.95  E-value=1e-26  Score=190.00  Aligned_cols=181  Identities=17%  Similarity=0.284  Sum_probs=146.8

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCC-CCceeCcEEEEecCCCCccEEEeccCcC
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV-GYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      .+++++||+.++    +|+++  .++|.+|.+|+++.+ +++||++||... ....++++++||+.+  ++|+.+     
T Consensus        77 ~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~~W~~~-----  142 (318)
T 2woz_A           77 QSYFFQLDNVSS----EWVGL--PPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVA--AKWSEV-----  142 (318)
T ss_dssp             CBEEEEEETTTT----EEEEC--SCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTT--TEEEEE-----
T ss_pred             cccEEEEeCCCC----cEEEC--CCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCC--CCEeEC-----
Confidence            346999999997    99998  468899999999999 589999999852 456789999999999  999999     


Q ss_pred             CCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c------------------------
Q 027962           89 NIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S------------------------  143 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------  143 (216)
                         .++|.+|.+|++++ .+++||++||.+......+++++||+.+.+|...+. +                        
T Consensus       143 ---~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  218 (318)
T 2woz_A          143 ---KNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTED  218 (318)
T ss_dssp             ---CCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETT
T ss_pred             ---CCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCC
Confidence               68899999999998 999999999986656678999999999999984431 1                        


Q ss_pred             ----cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          144 ----MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       144 ----~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                          .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||........ ........+++|.||+..
T Consensus       219 ~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~-~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          219 GLSASVEAFDLKTNKWEVMTEF---PQERSSISLVS--LAGSLYAIGGFAMIQLES-KEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EEEEEEEEEETTTCCEEECCCC---SSCCBSCEEEE--ETTEEEEECCBCCBC-----CCBCCBCCCEEEEETTT
T ss_pred             CccceEEEEECCCCeEEECCCC---CCcccceEEEE--ECCEEEEECCeeccCCCC-ceeccceeeeEEEEeCCC
Confidence                167899999999998654   78899998888  588999999985421111 111122568999999863

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=186.14  Aligned_cols=172  Identities=18%  Similarity=0.264  Sum_probs=144.3

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++++++||+.++    +|++++  ++|.+|.+|+++.+ +++||++||.. ....++++++||+.+  ++|+.+    
T Consensus        74 ~~~~~~~~~d~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~~d~~~--~~W~~~----  139 (302)
T 2xn4_A           74 LRVRTVDSYDPVKD----QWTSVA--NMRDRRSTLGAAVL-NGLLYAVGGFD-GSTGLSSVEAYNIKS--NEWFHV----  139 (302)
T ss_dssp             SBCCCEEEEETTTT----EEEEEC--CCSSCCBSCEEEEE-TTEEEEEEEEC-SSCEEEEEEEEETTT--TEEEEE----
T ss_pred             ccccceEEECCCCC----ceeeCC--CCCccccceEEEEE-CCEEEEEcCCC-CCccCceEEEEeCCC--CeEeec----
Confidence            45789999999997    999984  68899999999999 58999999995 456789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC-CCCCceEEEecCCCCcccccc-c----------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR-RRKDDFWVLDTKAIPFTSVQQ-S----------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~-~----------------------  143 (216)
                          .++|.+|.+|++++ .+++||++||.+... ...+++++||+.+.+|..... +                      
T Consensus       140 ----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  214 (302)
T 2xn4_A          140 ----APMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHD  214 (302)
T ss_dssp             ----CCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBS
T ss_pred             ----CCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCC
Confidence                68899999999988 899999999986543 357899999999999984431 0                      


Q ss_pred             ------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 ------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 ------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                            .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       215 ~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~--~~~~i~v~GG~~~~~----------~~~~v~~yd~~  275 (302)
T 2xn4_A          215 GPLVRKSVEVYDPTTNAWRQVADM---NMCRRNAGVCA--VNGLLYVVGGDDGSC----------NLASVEYYNPT  275 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCBCSSS----------BCCCEEEEETT
T ss_pred             CCcccceEEEEeCCCCCEeeCCCC---CCccccCeEEE--ECCEEEEECCcCCCc----------ccccEEEEcCC
Confidence                  177899999999999754   78899898887  488999999984321          34678888875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=185.51  Aligned_cols=172  Identities=17%  Similarity=0.225  Sum_probs=144.8

Q ss_pred             CcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccC
Q 027962            7 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYE   86 (216)
Q Consensus         7 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~   86 (216)
                      ...++++++||+.++    +|+++  .++|.+|.+|+++.+ +++||++||.. .....+++++||+.+  ++|+++   
T Consensus        26 ~~~~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~~~~~d~~~--~~W~~~---   92 (302)
T 2xn4_A           26 PKAIRSVECYDFKEE----RWHQV--AELPSRRCRAGMVYM-AGLVFAVGGFN-GSLRVRTVDSYDPVK--DQWTSV---   92 (302)
T ss_dssp             SSBCCCEEEEETTTT----EEEEE--CCCSSCCBSCEEEEE-TTEEEEESCBC-SSSBCCCEEEEETTT--TEEEEE---
T ss_pred             CCCCCcEEEEcCcCC----cEeEc--ccCCcccccceEEEE-CCEEEEEeCcC-CCccccceEEECCCC--CceeeC---
Confidence            345789999999997    99998  478889999999999 68999999985 445689999999999  999999   


Q ss_pred             cCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c----------------------
Q 027962           87 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S----------------------  143 (216)
Q Consensus        87 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------  143 (216)
                           .++|.+|.+|++++ .+++||++||.+. ....+++++||+.+.+|...+. +                      
T Consensus        93 -----~~~p~~r~~~~~~~-~~~~iyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  165 (302)
T 2xn4_A           93 -----ANMRDRRSTLGAAV-LNGLLYAVGGFDG-STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYD  165 (302)
T ss_dssp             -----CCCSSCCBSCEEEE-ETTEEEEEEEECS-SCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred             -----CCCCccccceEEEE-ECCEEEEEcCCCC-CccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCC
Confidence                 67999999999999 8999999999875 4557899999999999974431 0                      


Q ss_pred             --------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 --------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 --------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                              .+..||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       166 ~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~~~~yd~~  228 (302)
T 2xn4_A          166 VASRQCLSTVECYNATTNEWTYIAEM---STRRSGAGVGV--LNNLLYAVGGHDGPL----------VRKSVEVYDPT  228 (302)
T ss_dssp             TTTTEECCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCBSSSS----------BCCCEEEEETT
T ss_pred             CCCCccccEEEEEeCCCCcEEECCCC---ccccccccEEE--ECCEEEEECCCCCCc----------ccceEEEEeCC
Confidence                    167899999999999654   78899998888  488999999985321          45788888875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.94  E-value=3e-26  Score=186.55  Aligned_cols=173  Identities=17%  Similarity=0.182  Sum_probs=145.8

Q ss_pred             CcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCC---CCCceeCcEEEEecCCCCccEEEe
Q 027962            7 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRG---VGYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus         7 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~---~~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      +..++++++||+.++    +|+++  .++|.+|.+|+++.+ +++||++||..   ......+++++||+.+  ++|+++
T Consensus        35 ~~~~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~~W~~~  105 (308)
T 1zgk_A           35 RQSLSYLEAYNPSNG----TWLRL--ADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPC  105 (308)
T ss_dssp             SSBCCCEEEEETTTT----EEEEC--CCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEEC
T ss_pred             CCCcceEEEEcCCCC----eEeEC--CCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCC--CeEeEC
Confidence            456899999999997    99998  478899999999999 68999999983   3456789999999999  999999


Q ss_pred             ccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-------------------
Q 027962           84 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-------------------  143 (216)
Q Consensus        84 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------  143 (216)
                              .++|.+|.+|++++ .+++||++||.+. ....+++++||+.+.+|...+. +                   
T Consensus       106 --------~~~p~~r~~~~~~~-~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  175 (308)
T 1zgk_A          106 --------APMSVPRNRIGVGV-IDGHIYAVGGSHG-CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG  175 (308)
T ss_dssp             --------CCCSSCCBTCEEEE-ETTEEEEECCEET-TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             --------CCCCcCccccEEEE-ECCEEEEEcCCCC-CcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEe
Confidence                    67899999999999 8999999999865 3457899999999999984431 1                   


Q ss_pred             ---------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 ---------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 ---------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                               .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~v~~yd~~  239 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCV--LHNCIYAAGGYDGQD----------QLNSVERYDVE  239 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEE--ETTEEEEECCBCSSS----------BCCCEEEEETT
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCC---CCccccceEEE--ECCEEEEEeCCCCCC----------ccceEEEEeCC
Confidence                     177899999999998654   78999999888  488999999985331          35788888875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.94  E-value=5e-26  Score=185.23  Aligned_cols=171  Identities=16%  Similarity=0.166  Sum_probs=145.0

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++++++||+.++    +|+++  .++|.+|.+|+++.+ +++||++||.. ....++++++||+.+  ++|+.+    
T Consensus        87 ~~~~~~~~~d~~~~----~W~~~--~~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~--~~W~~~----  152 (308)
T 1zgk_A           87 TDSSALDCYNPMTN----QWSPC--APMSVPRNRIGVGVI-DGHIYAVGGSH-GCIHHNSVERYEPER--DEWHLV----  152 (308)
T ss_dssp             EECCCEEEEETTTT----EEEEC--CCCSSCCBTCEEEEE-TTEEEEECCEE-TTEECCCEEEEETTT--TEEEEC----
T ss_pred             eecceEEEECCCCC----eEeEC--CCCCcCccccEEEEE-CCEEEEEcCCC-CCcccccEEEECCCC--CeEeEC----
Confidence            34789999999997    99998  468889999999999 68999999985 456789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-----------------------
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-----------------------  143 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------  143 (216)
                          .++|.+|.+|++++ .+++||++||.+.. ...+++++||+.+.+|..... +                       
T Consensus       153 ----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          153 ----APMLTRRIGVGVAV-LNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             ----CCCSSCCBSCEEEE-ETTEEEEECCBCSS-CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             ----CCCCccccceEEEE-ECCEEEEEeCCCCC-CcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCC
Confidence                67899999999998 89999999999754 348999999999999974431 0                       


Q ss_pred             -----cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 -----MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 -----~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                           .+..||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       227 ~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~----------~~~~v~~yd~~  286 (308)
T 1zgk_A          227 QDQLNSVERYDVETETWTFVAPM---KHRRSALGITV--HQGRIYVLGGYDGHT----------FLDSVECYDPD  286 (308)
T ss_dssp             SSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEE--ETTEEEEECCBCSSC----------BCCEEEEEETT
T ss_pred             CCccceEEEEeCCCCcEEECCCC---CCCccceEEEE--ECCEEEEEcCcCCCc----------ccceEEEEcCC
Confidence                 178999999999998754   78899999888  488999999975321          45788999876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.94  E-value=9.9e-26  Score=182.49  Aligned_cols=171  Identities=16%  Similarity=0.240  Sum_probs=144.2

Q ss_pred             cccccEEEEeccCCccccc---eEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEec
Q 027962            8 LRLGDTWVLELSENFCFGS---WQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIP   84 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~---W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~   84 (216)
                      ..++++++||+.++    +   |+++  .++|.+|.+|+++.+ +++||++||.. .....+++++||+.+  ++|+.+ 
T Consensus        75 ~~~~~~~~~d~~~~----~~~~W~~~--~~~p~~r~~~~~~~~-~~~lyv~GG~~-~~~~~~~~~~~d~~~--~~W~~~-  143 (301)
T 2vpj_A           75 SRLSSVECLDYTAD----EDGVWYSV--APMNVRRGLAGATTL-GDMIYVSGGFD-GSRRHTSMERYDPNI--DQWSML-  143 (301)
T ss_dssp             CBCCCEEEEETTCC----TTCCCEEE--CCCSSCCBSCEEEEE-TTEEEEECCBC-SSCBCCEEEEEETTT--TEEEEE-
T ss_pred             ccCceEEEEECCCC----CCCeeEEC--CCCCCCccceeEEEE-CCEEEEEcccC-CCcccceEEEEcCCC--CeEEEC-
Confidence            45789999999997    8   9998  578899999999999 68999999995 455689999999999  999999 


Q ss_pred             cCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c--------------------
Q 027962           85 YELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S--------------------  143 (216)
Q Consensus        85 ~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------------  143 (216)
                             .++|.+|.+|++++ .+++||++||.+.. ...+++++||+.+.+|...+. +                    
T Consensus       144 -------~~~p~~r~~~~~~~-~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG  214 (301)
T 2vpj_A          144 -------GDMQTAREGAGLVV-ASGVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGG  214 (301)
T ss_dssp             -------EECSSCCBSCEEEE-ETTEEEEECCBCSS-CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred             -------CCCCCCcccceEEE-ECCEEEEECCCCCC-cccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeC
Confidence                   67899999999998 89999999998753 468999999999999984431 0                    


Q ss_pred             --------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 --------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 --------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                              .+..||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       215 ~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~----------~~~~v~~yd~~  277 (301)
T 2vpj_A          215 FDGTAHLSSVEAYNIRTDSWTTVTSM---TTPRCYVGATV--LRGRLYAIAGYDGNS----------LLSSIECYDPI  277 (301)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCBCSSS----------BEEEEEEEETT
T ss_pred             CCCCcccceEEEEeCCCCcEEECCCC---CCcccceeEEE--ECCEEEEEcCcCCCc----------ccccEEEEcCC
Confidence                    167899999999999654   78899998888  488999999975331          44688888875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=181.63  Aligned_cols=172  Identities=18%  Similarity=0.216  Sum_probs=145.3

Q ss_pred             CcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCcc---EEEe
Q 027962            7 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFK---WVQI   83 (216)
Q Consensus         7 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~---W~~~   83 (216)
                      +..++++++||+.++    +|++++  ++|.+|.+|+++.+ +++||++||.. .....+++++||+.+  ++   |+.+
T Consensus        27 ~~~~~~~~~~d~~~~----~W~~~~--~~p~~r~~~~~~~~-~~~l~v~GG~~-~~~~~~~~~~~d~~~--~~~~~W~~~   96 (301)
T 2vpj_A           27 QSPIDVVEKYDPKTQ----EWSFLP--SITRKRRYVASVSL-HDRIYVIGGYD-GRSRLSSVECLDYTA--DEDGVWYSV   96 (301)
T ss_dssp             TEECCCEEEEETTTT----EEEECC--CCSSCCBSCEEEEE-TTEEEEECCBC-SSCBCCCEEEEETTC--CTTCCCEEE
T ss_pred             CcceeEEEEEcCCCC----eEEeCC--CCChhhccccEEEE-CCEEEEEcCCC-CCccCceEEEEECCC--CCCCeeEEC
Confidence            355899999999997    999984  67889999999999 58999999995 556789999999999  99   9999


Q ss_pred             ccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcccccc-c-------------------
Q 027962           84 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQ-S-------------------  143 (216)
Q Consensus        84 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------  143 (216)
                              .++|.+|.+|+++. .+++||++||.+. ....+++++||+.+.+|...+. +                   
T Consensus        97 --------~~~p~~r~~~~~~~-~~~~lyv~GG~~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  166 (301)
T 2vpj_A           97 --------APMNVRRGLAGATT-LGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG  166 (301)
T ss_dssp             --------CCCSSCCBSCEEEE-ETTEEEEECCBCS-SCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEEC
T ss_pred             --------CCCCCCccceeEEE-ECCEEEEEcccCC-CcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEEC
Confidence                    78999999999999 8999999999975 3458899999999999984431 0                   


Q ss_pred             ---------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 ---------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 ---------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                               .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..++++.||+.
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~--~~~~i~v~GG~~~~~----------~~~~v~~yd~~  230 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVAL--LNDHIYVVGGFDGTA----------HLSSVEAYNIR  230 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEECCBCSSS----------BCCCEEEEETT
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCC---CcccccceEEE--ECCEEEEEeCCCCCc----------ccceEEEEeCC
Confidence                     177899999999999654   78999999888  488999999985332          35788888875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=183.15  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=140.6

Q ss_pred             ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccC-----CCCCceeCcEEEEecCCCCccEEEecc
Q 027962           11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGR-----GVGYEVLNDVWFLDVYEGFFKWVQIPY   85 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~~d~~~~~~~W~~~~~   85 (216)
                      +++++||++++    +|... ..+.|.+|.+|+++.+ +++||++||.     .......+++++||+.+  ++|+.+  
T Consensus        13 ~~~~~yd~~~~----~W~~~-~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~--   82 (315)
T 4asc_A           13 EGAVAYDPAAN----ECYCA-SLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD--SEWLGM--   82 (315)
T ss_dssp             TEEEEEETTTT----EEEEE-ECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTT--TEEEEC--
T ss_pred             CceEEECCCCC----eEecC-CCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCC--CeEEEC--
Confidence            58999999997    99873 3345779999999999 5899999996     22344567799999999  999999  


Q ss_pred             CcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcC--CCCCCCCceEEEecCCCCcccccc-c-------------------
Q 027962           86 ELQNIPAGFSLPRVGHSATLILGGRVLIYGGED--SARRRKDDFWVLDTKAIPFTSVQQ-S-------------------  143 (216)
Q Consensus        86 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------  143 (216)
                            .++|.+|.+|++++ .+++||++||.+  ......+++++||+.+.+|...+. +                   
T Consensus        83 ------~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  155 (315)
T 4asc_A           83 ------PPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIG  155 (315)
T ss_dssp             ------CCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             ------CCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEe
Confidence                  77999999999999 899999999975  235678999999999999974431 1                   


Q ss_pred             ----------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 ----------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 ----------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                                .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~~~~yd~~  220 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKFEWKELAPM---QTARSLFGATV--HDGRIIVAAGVTDTG----------LTSSAEVYSIT  220 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEE--ETTEEEEEEEECSSS----------EEEEEEEEETT
T ss_pred             CCCCCCcccceEEEEeCCCCeEEECCCC---CCchhceEEEE--ECCEEEEEeccCCCC----------ccceEEEEECC
Confidence                      178999999999998754   78999999988  488999999985432          45688888875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.92  E-value=2.2e-24  Score=193.48  Aligned_cols=163  Identities=20%  Similarity=0.293  Sum_probs=135.8

Q ss_pred             cccccEEEEeccCCccccceEEcc-c---CCCCCCCcCceEEEEc-CCeEEEEccCCCCCceeCcEEEEecCCCCccEEE
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLV-T---HPSPPARSGHSLTRIG-GNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQ   82 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~-~---~~~p~~r~~h~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~   82 (216)
                      ..++++|+||+.++    +|+++. .   +.+|.+|.+|+++.+. +++|||+||.+.....++++|+||+.+  ++|+.
T Consensus       409 ~~~~~v~~yd~~~~----~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t--~~W~~  482 (695)
T 2zwa_A          409 YRVNEILQLSIHYD----KIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT--REWSM  482 (695)
T ss_dssp             SBCCCEEEEEECSS----CEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT--TEEEE
T ss_pred             CCcCcEEEEECCCC----eEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC--CcEEE
Confidence            56899999999997    999986 3   3589999999999994 479999999965555789999999999  99999


Q ss_pred             eccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCC
Q 027962           83 IPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEG  162 (216)
Q Consensus        83 ~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~  162 (216)
                      +        +++|.+|.+|+++++.+++||+|||.+...    ++++||+.                  +++|+.+...+
T Consensus       483 ~--------~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~------------------t~~W~~~~~~g  532 (695)
T 2zwa_A          483 I--------KSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVT------------------EEIFKDVTPKD  532 (695)
T ss_dssp             C--------CCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETT------------------TTEEEECCCSS
T ss_pred             C--------CCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECC------------------CCceEEccCCC
Confidence            9        789999999999984499999999997543    99999999                  77999998877


Q ss_pred             CCCCCCcceeEEEecCC-CEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          163 YKPNCRSFHRACPDYSG-RYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       163 ~~~~~r~~h~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                      ..|.+|.+|+++++..+ ++|||+||......        ...+++++||+..
T Consensus       533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~--------~~~~~v~~yd~~~  577 (695)
T 2zwa_A          533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQT--------TVSDKAIIFKYDA  577 (695)
T ss_dssp             GGGGSCCBSCEEEEETTTTEEEEECCBCTTSS--------CBCCEEEEEEECT
T ss_pred             CCCCcccceeEEEEeCCCCEEEEECCcCCCCC--------eeeCcEEEEEccC
Confidence            77899999997764333 89999999854321        1557889888753

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.92  E-value=1.8e-24  Score=176.61  Aligned_cols=170  Identities=16%  Similarity=0.184  Sum_probs=137.3

Q ss_pred             cEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCC-----CceeCcEEEEecCCCCccEEEeccC
Q 027962           12 DTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVG-----YEVLNDVWFLDVYEGFFKWVQIPYE   86 (216)
Q Consensus        12 ~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~~~~~~W~~~~~~   86 (216)
                      ++++||++++    +|...+ .+.|.+|.+|+++.+ +++||++||....     ....+++++||+.+  ++|+++   
T Consensus        25 ~~~~yd~~~~----~W~~~~-~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~--~~W~~~---   93 (318)
T 2woz_A           25 AAVAYDPMEN----ECYLTA-LAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS--SEWVGL---   93 (318)
T ss_dssp             EEEEEETTTT----EEEEEE-ECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTT--TEEEEC---
T ss_pred             ceEEECCCCC----ceeccc-CCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCC--CcEEEC---
Confidence            5899999997    998853 345679999999999 5899999996311     12345599999999  999999   


Q ss_pred             cCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCC-CCCCCCceEEEecCCCCcccccc-c---------------------
Q 027962           87 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDS-ARRRKDDFWVLDTKAIPFTSVQQ-S---------------------  143 (216)
Q Consensus        87 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---------------------  143 (216)
                           +++|.+|.+|++++ .+++||++||... .....+++++||+.+.+|..... +                     
T Consensus        94 -----~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  167 (318)
T 2woz_A           94 -----PPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK  167 (318)
T ss_dssp             -----SCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred             -----CCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence                 78999999999998 8999999999863 34567899999999999984421 1                     


Q ss_pred             --------cccccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          144 --------MLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       144 --------~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                              .+.+||+.+++|+++...   |.+|..|++++  .+++|||+||.....          ..+++++||+.
T Consensus       168 ~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~--~~~~iyv~GG~~~~~----------~~~~~~~yd~~  230 (318)
T 2woz_A          168 TDDKKCTNRVFIYNPKKGDWKDLAPM---KTPRSMFGVAI--HKGKIVIAGGVTEDG----------LSASVEAFDLK  230 (318)
T ss_dssp             ESSSCBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEE--ETTEEEEEEEEETTE----------EEEEEEEEETT
T ss_pred             CCCCCccceEEEEcCCCCEEEECCCC---CCCcccceEEE--ECCEEEEEcCcCCCC----------ccceEEEEECC
Confidence                    178999999999999754   78999999888  588999999985431          45688888876

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.92  E-value=2.6e-24  Score=178.14  Aligned_cols=176  Identities=16%  Similarity=0.224  Sum_probs=133.6

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCC-------------------------
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGY-------------------------   62 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~-------------------------   62 (216)
                      ..++++|+||++++    +|+++...+ |.+|.+|+++.+ +++|||+||.....                         
T Consensus        83 ~~~~~v~~yd~~~~----~W~~~~~~~-p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (357)
T 2uvk_A           83 QVFNDVHKYNPKTN----SWVKLMSHA-PMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY  156 (357)
T ss_dssp             EECCCEEEEETTTT----EEEECSCCC-SSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eeeccEEEEeCCCC----cEEECCCCC-CcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence            34899999999997    999986322 589999999998 68999999984221                         


Q ss_pred             --------ceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCC-ceEEEEeCCEEEEEeCcCCCCCCCCceEEEec-
Q 027962           63 --------EVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVG-HSATLILGGRVLIYGGEDSARRRKDDFWVLDT-  132 (216)
Q Consensus        63 --------~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~-~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~-  132 (216)
                              ..++++++||+.+  ++|+.+        .++|.+|.. |++++ .+++||+|||.+......+++++||+ 
T Consensus       157 ~~~~~~~~~~~~~v~~yd~~~--~~W~~~--------~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d  225 (357)
T 2uvk_A          157 FDKKAEDYFFNKFLLSFDPST--QQWSYA--------GESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFT  225 (357)
T ss_dssp             HSSCGGGGCCCCEEEEEETTT--TEEEEE--------EECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC
T ss_pred             ccccccccCCcccEEEEeCCC--CcEEEC--------CCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEec
Confidence                    2468999999999  999999        567766554 88877 89999999998765556789999987 


Q ss_pred             -CCCCcccccc---c---------------------------------------------cccccCcccCCceEeecCCC
Q 027962          133 -KAIPFTSVQQ---S---------------------------------------------MLDSRGLLLNMWKRLRAEGY  163 (216)
Q Consensus       133 -~~~~~~~~~~---~---------------------------------------------~~~~~~~~~~~W~~~~~~~~  163 (216)
                       ++.+|.....   +                                             .+.+||+.+++|+++...  
T Consensus       226 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--  303 (357)
T 2uvk_A          226 GNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--  303 (357)
T ss_dssp             ---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC--
T ss_pred             CCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC--
Confidence             8888974321   0                                             134789999999999765  


Q ss_pred             CCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeeccc
Q 027962          164 KPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELVP  214 (216)
Q Consensus       164 ~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~  214 (216)
                       |.+|..|++++  .+++||||||......         ..+|+++|+++.
T Consensus       304 -p~~r~~~~~~~--~~~~i~v~GG~~~~~~---------~~~~v~~l~~~~  342 (357)
T 2uvk_A          304 -SQGRAYGVSLP--WNNSLLIIGGETAGGK---------AVTDSVLITVKD  342 (357)
T ss_dssp             -SSCCBSSEEEE--ETTEEEEEEEECGGGC---------EEEEEEEEEC-C
T ss_pred             -CCCcccceeEE--eCCEEEEEeeeCCCCC---------EeeeEEEEEEcC
Confidence             78999998887  5899999999854321         357888888763

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.91  E-value=3.4e-23  Score=171.46  Aligned_cols=153  Identities=17%  Similarity=0.259  Sum_probs=122.1

Q ss_pred             cccEEEEeccC--CccccceEEcccCCCC-CCCcCceEEEEcCCeEEEEccCC----CCCceeCcEEEEecCCCCccEEE
Q 027962           10 LGDTWVLELSE--NFCFGSWQQLVTHPSP-PARSGHSLTRIGGNRTVLFGGRG----VGYEVLNDVWFLDVYEGFFKWVQ   82 (216)
Q Consensus        10 ~~~~~~~d~~~--~~~~~~W~~~~~~~~p-~~r~~h~~~~~~~~~iyv~GG~~----~~~~~~~~~~~~d~~~~~~~W~~   82 (216)
                      .+++|+||+.+  +    +|++++  ++| .+|.+|+++.+ +++||||||.+    .....++++++||+.+  ++|++
T Consensus        30 ~~~~~~~d~~~~~~----~W~~~~--~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~--~~W~~  100 (357)
T 2uvk_A           30 GTAWYKLDTQAKDK----KWTALA--AFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT--NSWVK  100 (357)
T ss_dssp             TTCEEEEETTSSSC----CEEECC--CCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTT--TEEEE
T ss_pred             CCeEEEEccccCCC----CeeECC--CCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCC--CcEEE
Confidence            46999999984  5    999984  577 79999999999 58999999982    2346789999999999  99999


Q ss_pred             eccCcCCCCCCC-CCCCCCceEEEEeCCEEEEEeCcCCCC---------------------------------CCCCceE
Q 027962           83 IPYELQNIPAGF-SLPRVGHSATLILGGRVLIYGGEDSAR---------------------------------RRKDDFW  128 (216)
Q Consensus        83 ~~~~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~~~~~---------------------------------~~~~~~~  128 (216)
                      +        ..+ |.+|.+|++++ .+++||++||.+...                                 ...++++
T Consensus       101 ~--------~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  171 (357)
T 2uvk_A          101 L--------MSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL  171 (357)
T ss_dssp             C--------SCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred             C--------CCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence            9        344 49999999998 999999999986421                                 2468999


Q ss_pred             EEecCCCCccccccccccccCcccCCceEeecCCCCCCCC-cceeEEEecCCCEEEEEccccCCCCCCCCCcccccccce
Q 027962          129 VLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCR-SFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRL  207 (216)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r-~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~  207 (216)
                      +||+.                  +++|+.+...   |.+| .+|++++  .+++|||+||.....         ...+++
T Consensus       172 ~yd~~------------------~~~W~~~~~~---p~~~~~~~~~~~--~~~~iyv~GG~~~~~---------~~~~~v  219 (357)
T 2uvk_A          172 SFDPS------------------TQQWSYAGES---PWYGTAGAAVVN--KGDKTWLINGEAKPG---------LRTDAV  219 (357)
T ss_dssp             EEETT------------------TTEEEEEEEC---SSCCCBSCEEEE--ETTEEEEECCEEETT---------EECCCE
T ss_pred             EEeCC------------------CCcEEECCCC---CCCCcccccEEE--ECCEEEEEeeecCCC---------cccCce
Confidence            99998                  7799999764   5554 5588877  589999999985332         134677


Q ss_pred             eEeec
Q 027962          208 LLVEL  212 (216)
Q Consensus       208 ~~~~~  212 (216)
                      +.||+
T Consensus       220 ~~~d~  224 (357)
T 2uvk_A          220 FELDF  224 (357)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77776

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.89  E-value=2.7e-22  Score=179.99  Aligned_cols=165  Identities=15%  Similarity=0.155  Sum_probs=127.7

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQ   88 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~   88 (216)
                      .++++|+||+.++    +|+++  .++|.+|.+|+++.+.+++||||||.+...    ++++||+.+  ++|+.+.    
T Consensus       466 ~~~dv~~yd~~t~----~W~~~--~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t--~~W~~~~----  529 (695)
T 2zwa_A          466 GLSDNWIFDMKTR----EWSMI--KSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTE--EIFKDVT----  529 (695)
T ss_dssp             BCCCCEEEETTTT----EEEEC--CCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTT--TEEEECC----
T ss_pred             ccccEEEEeCCCC----cEEEC--CCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCC--CceEEcc----
Confidence            5899999999997    99998  578899999999997457999999995333    899999999  9999995    


Q ss_pred             CCCCCCCCCCCCceEEEEe-C-CEEEEEeCcCCCC-CCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCC
Q 027962           89 NIPAGFSLPRVGHSATLIL-G-GRVLIYGGEDSAR-RRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKP  165 (216)
Q Consensus        89 ~~~~~~p~~r~~~~~~~~~-~-~~l~v~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~  165 (216)
                       ..+++|.+|.+|+++++. + ++||++||....+ ...+++++||+.+++|.            ....|+++...  .+
T Consensus       530 -~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~------------~~~~W~~~~~~--p~  594 (695)
T 2zwa_A          530 -PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT------------EPITVIKKLQH--PL  594 (695)
T ss_dssp             -CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSS------------CCEEEEEEEEC--GG
T ss_pred             -CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccc------------cceEEEEcCCC--CC
Confidence             334589999999977732 2 8999999996543 56899999999944220            01128888763  14


Q ss_pred             CCCcceeEEEecCC-CEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          166 NCRSFHRACPDYSG-RYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       166 ~~r~~h~~~~~~~~-~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      .+|.+|+++++  + ++|||+||......       ....++++.||+.
T Consensus       595 ~~R~~~~~~~~--~~~~iyv~GG~~~~~~-------~~~~~~v~~yd~~  634 (695)
T 2zwa_A          595 FQRYGSQIKYI--TPRKLLIVGGTSPSGL-------FDRTNSIISLDPL  634 (695)
T ss_dssp             GCCBSCEEEEE--ETTEEEEECCBCSSCC-------CCTTTSEEEEETT
T ss_pred             CCcccceEEEe--CCCEEEEECCccCCCC-------CCCCCeEEEEECC
Confidence            78999998884  5 89999999853321       0245788888876

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.78  E-value=1.4e-17  Score=148.36  Aligned_cols=178  Identities=14%  Similarity=0.074  Sum_probs=131.3

Q ss_pred             ccccEEEEeccCCccccceEEcccCCCCCCCcCce--EEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccC
Q 027962            9 RLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHS--LTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYE   86 (216)
Q Consensus         9 ~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~   86 (216)
                      ..+++++||++++    +|+++.  .+|.+|..|+  ++.+.+++||++||...     +++++||+.+  ++|+++   
T Consensus       217 ~~~~~~~yd~~t~----~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t--~~W~~~---  280 (656)
T 1k3i_A          217 GITLTSSWDPSTG----IVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSS--DSWIPG---  280 (656)
T ss_dssp             SEEEEEEECTTTC----CBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGG--TEEEEC---
T ss_pred             CeEEEEEEeCCCC----cEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcC--CceeEC---
Confidence            3568999999997    999874  4566676654  45444689999999853     2799999999  999999   


Q ss_pred             cCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccc------c------------------
Q 027962           87 LQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQ------Q------------------  142 (216)
Q Consensus        87 ~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------  142 (216)
                           .++|.+|.+|+++++.+++||++||........+++++||+.+.+|...+      .                  
T Consensus       281 -----~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~  355 (656)
T 1k3i_A          281 -----PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  355 (656)
T ss_dssp             -----CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             -----CCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence                 78999999999988339999999996444556788999999888886320      0                  


Q ss_pred             ----------------------------------------------------c------------------------ccc
Q 027962          143 ----------------------------------------------------S------------------------MLD  146 (216)
Q Consensus       143 ----------------------------------------------------~------------------------~~~  146 (216)
                                                                          .                        .+.
T Consensus       356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~  435 (656)
T 1k3i_A          356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  435 (656)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence                                                                0                        144


Q ss_pred             ccCcccCCceEeecCCCCCCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          147 SRGLLLNMWKRLRAEGYKPNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       147 ~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      +||+.+++|.++. .+..|.+|..|++++. .+++|||+||........    .....+++++||..
T Consensus       436 ~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l-~~g~i~v~GG~~~~~~~~----~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          436 LGEPGTSPNTVFA-SNGLYFARTFHTSVVL-PDGSTFITGGQRRGIPFE----DSTPVFTPEIYVPE  496 (656)
T ss_dssp             CCSTTSCCEEEEC-TTCCSSCCBSCEEEEC-TTSCEEEECCBSBCCTTC----CCSBCCCCEEEEGG
T ss_pred             cCCCCCCCeeEEc-cCCCCCCcccCCeEEC-CCCCEEEECCcccCcCcC----CCCcccceEEEcCC
Confidence            6778888898876 2345889999988774 478999999985331100    11245677888764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.69  E-value=1e-16  Score=142.90  Aligned_cols=147  Identities=11%  Similarity=0.060  Sum_probs=105.7

Q ss_pred             EEEEeccCCccccceEEcccCCCCCCCcCceEEEEc-CCeEEEEccCCCC-----CceeCcEEEEecCCCCccEEEeccC
Q 027962           13 TWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIG-GNRTVLFGGRGVG-----YEVLNDVWFLDVYEGFFKWVQIPYE   86 (216)
Q Consensus        13 ~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~-~~~iyv~GG~~~~-----~~~~~~~~~~d~~~~~~~W~~~~~~   86 (216)
                      +..||+.++    +|+.+.    |.|+..|+++.+. +++||++||....     ....+++++||+.+  ++|+.+   
T Consensus       168 ~~~~dp~~~----~W~~~~----~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~---  234 (656)
T 1k3i_A          168 YTAPQPGLG----RWGPTI----DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDR---  234 (656)
T ss_dssp             CCCCCTTSC----EEEEEE----ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCC---
T ss_pred             cccCCCCCC----eeeeec----cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC--CcEEeC---
Confidence            444566675    999873    3456667777663 5899999997432     12345799999999  999988   


Q ss_pred             cCCCCCCCCCCCCCce--EEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCC
Q 027962           87 LQNIPAGFSLPRVGHS--ATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYK  164 (216)
Q Consensus        87 ~~~~~~~~p~~r~~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~  164 (216)
                           ..+|.+|..++  +++..+++||++||.+.     .++++||+.                  +++|+++..+   
T Consensus       235 -----~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~------------------t~~W~~~~~~---  283 (656)
T 1k3i_A          235 -----TVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSS------------------SDSWIPGPDM---  283 (656)
T ss_dssp             -----EEEECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGG------------------GTEEEECCCC---
T ss_pred             -----cccCCCCCCccccccCCCCCCEEEeCCCCC-----CceEEecCc------------------CCceeECCCC---
Confidence                 45677776554  44437899999999864     279999998                  7799988654   


Q ss_pred             CCCCcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          165 PNCRSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       165 ~~~r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      +.+|..|+++++ .+++|||+||..+...         ..+++++||..
T Consensus       284 ~~~R~~~s~~~~-~dg~iyv~GG~~~~~~---------~~~~~e~yd~~  322 (656)
T 1k3i_A          284 QVARGYQSSATM-SDGRVFTIGGSWSGGV---------FEKNGEVYSPS  322 (656)
T ss_dssp             SSCCSSCEEEEC-TTSCEEEECCCCCSSS---------CCCCEEEEETT
T ss_pred             CccccccceEEe-cCCeEEEEeCcccCCc---------ccccceEeCCC
Confidence            789999988873 3889999999643321         33566666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=90.83  E-value=5  Score=31.63  Aligned_cols=96  Identities=14%  Similarity=0.089  Sum_probs=51.0

Q ss_pred             ccEEEEeccCCccccceEE-cccCCCCCCCcCceEEEEcCCeEEEEccCCCCCce----eCcEEEEecCCCCccEEEecc
Q 027962           11 GDTWVLELSENFCFGSWQQ-LVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEV----LNDVWFLDVYEGFFKWVQIPY   85 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~-~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~----~~~~~~~d~~~~~~~W~~~~~   85 (216)
                      +.+.++|+++.    +..+ +..+..  |   +.++.-.++++|+..........    .+.++++|+.+  .+....  
T Consensus       152 ~~v~viD~~t~----~~~~~i~~g~~--p---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~v~~~--  218 (328)
T 3dsm_A          152 NRILKIDTETD----KVVDELTIGIQ--P---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FTVEKQ--  218 (328)
T ss_dssp             CEEEEEETTTT----EEEEEEECSSC--B---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TEEEEE--
T ss_pred             CEEEEEECCCC----eEEEEEEcCCC--c---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--CeEEEE--
Confidence            46888999885    4332 222221  2   23333445788777532111111    36799999988  655432  


Q ss_pred             CcCCCCCCCCCCCCCceEEEEe-CCEEEEEeCcCCCCCCCCceEEEecCC
Q 027962           86 ELQNIPAGFSLPRVGHSATLIL-GGRVLIYGGEDSARRRKDDFWVLDTKA  134 (216)
Q Consensus        86 ~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~  134 (216)
                            -..|....-...++.. ++.||+..+         .++++|+.+
T Consensus       219 ------~~~~~g~~p~~la~~~d~~~lyv~~~---------~v~~~d~~t  253 (328)
T 3dsm_A          219 ------FKFKLGDWPSEVQLNGTRDTLYWINN---------DIWRMPVEA  253 (328)
T ss_dssp             ------EECCTTCCCEEEEECTTSCEEEEESS---------SEEEEETTC
T ss_pred             ------EecCCCCCceeEEEecCCCEEEEEcc---------EEEEEECCC
Confidence                  1122222223444422 567777532         789999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=86.15  E-value=9.8  Score=29.18  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             ccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCC
Q 027962           11 GDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNI   90 (216)
Q Consensus        11 ~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~   90 (216)
                      +.+..+|+++.    +=.+-  -++|..-.+..++.. ++++|+....      .+.++.||.++  .+-  +       
T Consensus        43 S~v~~vD~~tg----kv~~~--~~l~~~~fgeGi~~~-~~~ly~ltw~------~~~v~v~D~~t--l~~--~-------   98 (243)
T 3mbr_X           43 SSVRKVDLETG----RILQR--AEVPPPYFGAGIVAW-RDRLIQLTWR------NHEGFVYDLAT--LTP--R-------   98 (243)
T ss_dssp             CEEEEEETTTC----CEEEE--EECCTTCCEEEEEEE-TTEEEEEESS------SSEEEEEETTT--TEE--E-------
T ss_pred             ceEEEEECCCC----CEEEE--EeCCCCcceeEEEEe-CCEEEEEEee------CCEEEEEECCc--CcE--E-------
Confidence            57888999985    33221  134444455666777 5799998544      25689999987  433  2       


Q ss_pred             CCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCC
Q 027962           91 PAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAI  135 (216)
Q Consensus        91 ~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~  135 (216)
                       ...+.+-.+.+.+. .+++||+.-|       .+.++.+|+++.
T Consensus        99 -~ti~~~~~Gwglt~-dg~~L~vSdg-------s~~l~~iDp~t~  134 (243)
T 3mbr_X           99 -ARFRYPGEGWALTS-DDSHLYMSDG-------TAVIRKLDPDTL  134 (243)
T ss_dssp             -EEEECSSCCCEEEE-CSSCEEEECS-------SSEEEEECTTTC
T ss_pred             -EEEeCCCCceEEee-CCCEEEEECC-------CCeEEEEeCCCC
Confidence             12233335556665 6777888644       235666666653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=83.13  E-value=19  Score=31.65  Aligned_cols=77  Identities=16%  Similarity=0.033  Sum_probs=42.4

Q ss_pred             eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCC
Q 027962           43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR  122 (216)
Q Consensus        43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~  122 (216)
                      +-++. ++.+|+....       ..++.+|..+++..|+.-............+.....+.++ .+++||+.. .     
T Consensus        61 ~P~v~-~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~-~-----  125 (668)
T 1kv9_A           61 TPLFH-DGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGT-L-----  125 (668)
T ss_dssp             CCEEE-TTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEEC-T-----
T ss_pred             CCEEE-CCEEEEECCC-------CeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEc-C-----
Confidence            33455 5788887542       3589999988888898752000000000001111223344 778877742 1     


Q ss_pred             CCCceEEEecCCC
Q 027962          123 RKDDFWVLDTKAI  135 (216)
Q Consensus       123 ~~~~~~~~~~~~~  135 (216)
                       ...++++|..+-
T Consensus       126 -dg~l~alD~~tG  137 (668)
T 1kv9_A          126 -DGRLIALDAKTG  137 (668)
T ss_dssp             -TSEEEEEETTTC
T ss_pred             -CCEEEEEECCCC
Confidence             246899998866

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=80.71  E-value=30  Score=30.60  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=42.1

Q ss_pred             eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCC
Q 027962           43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR  122 (216)
Q Consensus        43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~  122 (216)
                      +-++. ++.+|+....       +.++.+|..+++..|+.-............+.....+.++ .+++||+-. .     
T Consensus        65 ~P~v~-~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~v~~-~-----  129 (689)
T 1yiq_A           65 TPIVV-DGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV-WKGKVYVGV-L-----  129 (689)
T ss_dssp             CCEEE-TTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEEC-T-----
T ss_pred             cCEEE-CCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE-ECCEEEEEc-c-----
Confidence            33445 5788887542       3589999998888898652000000000000111122344 788877743 1     


Q ss_pred             CCCceEEEecCCC
Q 027962          123 RKDDFWVLDTKAI  135 (216)
Q Consensus       123 ~~~~~~~~~~~~~  135 (216)
                       ...+.++|..+-
T Consensus       130 -dg~l~AlDa~TG  141 (689)
T 1yiq_A          130 -DGRLEAIDAKTG  141 (689)
T ss_dssp             -TSEEEEEETTTC
T ss_pred             -CCEEEEEECCCC
Confidence             246899998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.79
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.78
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.85
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	81.43
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.36

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-25  Score=175.28  Aligned_cols=173  Identities=16%  Similarity=0.193  Sum_probs=133.7

Q ss_pred             CcccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCC---CCceeCcEEEEecCCCCccEEEe
Q 027962            7 GLRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGV---GYEVLNDVWFLDVYEGFFKWVQI   83 (216)
Q Consensus         7 ~~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~---~~~~~~~~~~~d~~~~~~~W~~~   83 (216)
                      ...++++++||++++    +|+++  .++|.||.+|+++.+ +++|||+||...   ....++++|.||+.+  ++|+.+
T Consensus        15 ~~~~~~~~~yd~~t~----~W~~~--~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--~~w~~~   85 (288)
T d1zgka1          15 RQSLSYLEAYNPSNG----TWLRL--ADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--NQWSPC   85 (288)
T ss_dssp             SSBCCCEEEEETTTT----EEEEC--CCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTT--TEEEEC
T ss_pred             CCCCceEEEEECCCC----eEEEC--CCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhccccc--cccccc
Confidence            455899999999997    99998  478999999999999 589999999731   245688999999999  999999


Q ss_pred             ccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCce------------------------------------
Q 027962           84 PYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDF------------------------------------  127 (216)
Q Consensus        84 ~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~------------------------------------  127 (216)
                              +++|.+|.+|++++ .++++|++||... ....++.                                    
T Consensus        86 --------~~~p~~r~~~~~~~-~~~~i~~~gg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          86 --------APMSVPRNRIGVGV-IDGHIYAVGGSHG-CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             --------CCCSSCCBTCEEEE-ETTEEEEECCEET-TEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred             --------ccccceecceeccc-cceeeEEecceec-ccccceeeeeccccCccccccccccccccceeeeeeecceEec
Confidence                    78999999999998 8999999998643 2233444                                    


Q ss_pred             -----------EEEecCCCCccccccc-----------------------------cccccCcccCCceEeecCCCCCCC
Q 027962          128 -----------WVLDTKAIPFTSVQQS-----------------------------MLDSRGLLLNMWKRLRAEGYKPNC  167 (216)
Q Consensus       128 -----------~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~W~~~~~~~~~~~~  167 (216)
                                 +.||+.+.+|......                             ....|++.+.+|+.+...   |.+
T Consensus       156 G~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~  232 (288)
T d1zgka1         156 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM---KHR  232 (288)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC---SSC
T ss_pred             CcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCc---cCc
Confidence                       4445444444322110                             067778888888877643   788


Q ss_pred             CcceeEEEecCCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          168 RSFHRACPDYSGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       168 r~~h~~~~~~~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      |..|++++  .+++||||||.....          +.+++++||++
T Consensus       233 r~~~~~~~--~~~~l~v~GG~~~~~----------~~~~v~~yd~~  266 (288)
T d1zgka1         233 RSALGITV--HQGRIYVLGGYDGHT----------FLDSVECYDPD  266 (288)
T ss_dssp             CBSCEEEE--ETTEEEEECCBCSSC----------BCCEEEEEETT
T ss_pred             ccceEEEE--ECCEEEEEecCCCCe----------ecceEEEEECC
Confidence            99999988  488999999984332          55788999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.79  E-value=1.8e-18  Score=141.66  Aligned_cols=110  Identities=16%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             cccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCC
Q 027962           10 LGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQN   89 (216)
Q Consensus        10 ~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~   89 (216)
                      +..+++||++++    +|++......|..+..++++...++++|++||.+.     +++++||+.+  ++|+.+      
T Consensus        51 ~~~~~~yd~~t~----~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~--~~w~~~------  113 (387)
T d1k3ia3          51 ITLTSSWDPSTG----IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSS--DSWIPG------  113 (387)
T ss_dssp             EEEEEEECTTTC----CBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGG--TEEEEC------
T ss_pred             eeEEEEEECCCC----cEeecCCCCCCcccceeEEEEecCCcEEEeecCCC-----cceeEecCcc--Cccccc------
Confidence            556889999997    99876533333444455666666789999998852     5689999999  999998      


Q ss_pred             CCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCcc
Q 027962           90 IPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFT  138 (216)
Q Consensus        90 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~  138 (216)
                        .++|.+|.+|+++++.++++|++||........+++++||+.+++|.
T Consensus       114 --~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         114 --PDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             --CCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             --ccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence              78999999999988678899999998777777899999999998886

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.1e-18  Score=133.28  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=110.8

Q ss_pred             cccccEEEEeccCCccccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCc
Q 027962            8 LRLGDTWVLELSENFCFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYEL   87 (216)
Q Consensus         8 ~~~~~~~~~d~~~~~~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~   87 (216)
                      ..++++++||+.++    +|...  ..++.++..|+++.+ +++|+++||.. ....+++++.||..+  .+|+.+    
T Consensus       161 ~~~~~~~~~d~~~~----~~~~~--~~~~~~~~~~~~~~~-~~~i~i~GG~~-~~~~~~~~~~~~~~~--~~~~~~----  226 (288)
T d1zgka1         161 NRLNSAECYYPERN----EWRMI--TAMNTIRSGAGVCVL-HNCIYAAGGYD-GQDQLNSVERYDVET--ETWTFV----  226 (288)
T ss_dssp             CBCCCEEEEETTTT----EEEEC--CCCSSCCBSCEEEEE-TTEEEEECCBC-SSSBCCCEEEEETTT--TEEEEC----
T ss_pred             cccceEEEeecccc----ccccc--cccccccccccccce-eeeEEEecCcc-ccccccceeeeeecc--eeeecc----
Confidence            44789999999996    99987  456778899999999 58999999985 566789999999999  999999    


Q ss_pred             CCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCC
Q 027962           88 QNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNC  167 (216)
Q Consensus        88 ~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~  167 (216)
                          .++|.+|.+|++++ .+++||||||.+. ....+++++||++                  +++|+++..+   |.+
T Consensus       227 ----~~~p~~r~~~~~~~-~~~~l~v~GG~~~-~~~~~~v~~yd~~------------------~~~W~~~~~~---p~~  279 (288)
T d1zgka1         227 ----APMKHRRSALGITV-HQGRIYVLGGYDG-HTFLDSVECYDPD------------------TDTWSEVTRM---TSG  279 (288)
T ss_dssp             ----CCCSSCCBSCEEEE-ETTEEEEECCBCS-SCBCCEEEEEETT------------------TTEEEEEEEC---SSC
T ss_pred             ----cCccCcccceEEEE-ECCEEEEEecCCC-CeecceEEEEECC------------------CCEEEECCCC---CCC
Confidence                67899999999998 8999999999965 5678899999999                  7799999876   889


Q ss_pred             CcceeEEE
Q 027962          168 RSFHRACP  175 (216)
Q Consensus       168 r~~h~~~~  175 (216)
                      |.+|++++
T Consensus       280 R~~~~~~~  287 (288)
T d1zgka1         280 RSGVGVAV  287 (288)
T ss_dssp             CBSCEEEE
T ss_pred             cEeEEEEE
Confidence            99998876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.59  E-value=2.5e-15  Score=122.67  Aligned_cols=144  Identities=13%  Similarity=0.144  Sum_probs=99.9

Q ss_pred             cccceEEcccCCCCCCCcCceEEEEcCCeEEEEccCCCC-----CceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCC
Q 027962           23 CFGSWQQLVTHPSPPARSGHSLTRIGGNRTVLFGGRGVG-----YEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLP   97 (216)
Q Consensus        23 ~~~~W~~~~~~~~p~~r~~h~~~~~~~~~iyv~GG~~~~-----~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~   97 (216)
                      ..++|+...  ++|..+.+++++.. +++||+|||....     ...+..+++||+.+  ++|+++.      ....|..
T Consensus         7 ~~g~W~~~~--~~p~~~~~~a~~~~-~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t--~~w~~~~------~~~~~~~   75 (387)
T d1k3ia3           7 GLGRWGPTI--DLPIVPAAAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPST--GIVSDRT------VTVTKHD   75 (387)
T ss_dssp             TSCEEEEEE--ECSSCCSEEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTT--CCBCCCE------EEECSCC
T ss_pred             CCCccCCcC--CCCccccEEEEEee-CCEEEEEEeecCcccCCCCCceeEEEEEECCC--CcEeecC------CCCCCcc
Confidence            346899763  45555665544444 6899999997421     12344588999999  9998762      1223444


Q ss_pred             CCCceEEEEeCCEEEEEeCcCCCCCCCCceEEEecCCCCccccccccccccCcccCCceEeecCCCCCCCCcceeEEEec
Q 027962           98 RVGHSATLILGGRVLIYGGEDSARRRKDDFWVLDTKAIPFTSVQQSMLDSRGLLLNMWKRLRAEGYKPNCRSFHRACPDY  177 (216)
Q Consensus        98 r~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~h~~~~~~  177 (216)
                      +..++.++..++++|++||.+.     +++++||+.                  +.+|..+..+   +.+|..|++++. 
T Consensus        76 ~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~------------------~~~w~~~~~~---~~~r~~~~~~~~-  128 (387)
T d1k3ia3          76 MFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSS------------------SDSWIPGPDM---QVARGYQSSATM-  128 (387)
T ss_dssp             CSSCEEEECTTSCEEEECSSST-----TCEEEEEGG------------------GTEEEECCCC---SSCCSSCEEEEC-
T ss_pred             cceeEEEEecCCcEEEeecCCC-----cceeEecCc------------------cCcccccccc---cccccccceeee-
Confidence            5555555557889999998753     567899988                  7799887554   788998988875 


Q ss_pred             CCCEEEEEccccCCCCCCCCCcccccccceeEeecc
Q 027962          178 SGRYLYVFGGMVDGLVQPADTSGLRFDGRLLLVELV  213 (216)
Q Consensus       178 ~~~~l~i~GG~~~~~~~~~~~~~~~~~~d~~~~~~~  213 (216)
                      .++++|++||......         ..+++++||..
T Consensus       129 ~dG~v~v~GG~~~~~~---------~~~~v~~yd~~  155 (387)
T d1k3ia3         129 SDGRVFTIGGSWSGGV---------FEKNGEVYSPS  155 (387)
T ss_dssp             TTSCEEEECCCCCSSS---------CCCCEEEEETT
T ss_pred             cCCceeeecccccccc---------ccceeeeecCC
Confidence            5679999999854322         44566777654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=83.85  E-value=9.4  Score=30.82  Aligned_cols=78  Identities=15%  Similarity=0.023  Sum_probs=42.8

Q ss_pred             ceEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCC
Q 027962           42 HSLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSAR  121 (216)
Q Consensus        42 h~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~  121 (216)
                      .+=+++ ++.+|+....       +.++.+|.++++..|+.-....................+. .++++|+...     
T Consensus        60 stPiv~-~g~vyv~t~~-------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-----  125 (560)
T d1kv9a2          60 ATPLFH-DGVIYTSMSW-------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTL-----  125 (560)
T ss_dssp             CCCEEE-TTEEEEEEGG-------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECT-----
T ss_pred             eCCEEE-CCEEEEECCC-------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce-eCCeEEEEeC-----
Confidence            444666 6789987533       4689999999889998641000000001111112223334 6677666421     


Q ss_pred             CCCCceEEEecCCC
Q 027962          122 RRKDDFWVLDTKAI  135 (216)
Q Consensus       122 ~~~~~~~~~~~~~~  135 (216)
                        -..++++|..+-
T Consensus       126 --~g~l~Alda~tG  137 (560)
T d1kv9a2         126 --DGRLIALDAKTG  137 (560)
T ss_dssp             --TSEEEEEETTTC
T ss_pred             --CCEEEEEECCCC
Confidence              245788888765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.43  E-value=8.2  Score=28.42  Aligned_cols=80  Identities=5%  Similarity=-0.044  Sum_probs=39.5

Q ss_pred             eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCC
Q 027962           43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR  122 (216)
Q Consensus        43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~  122 (216)
                      .++.-.++.+|+..-.  .......+..++..+  .....+.       ........-...++..++.+|+..-......
T Consensus        86 gla~~~dG~l~va~~~--~~~~~~~i~~~~~~~--~~~~~~~-------~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          86 AIKIHKDGRLFVCYLG--DFKSTGGIFAATENG--DNLQDII-------EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN  154 (319)
T ss_dssp             EEEECTTSCEEEEECT--TSSSCCEEEEECTTS--CSCEEEE-------CSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred             EEEECCCCCEEEEecC--CCccceeEEEEcCCC--ceeeeec-------cCCCcccCCcceeEEeccceeeccccccccc
Confidence            3444446788887422  112345677888776  5444442       1212222222344447778887532211122


Q ss_pred             CCCceEEEecC
Q 027962          123 RKDDFWVLDTK  133 (216)
Q Consensus       123 ~~~~~~~~~~~  133 (216)
                      ....+++++.+
T Consensus       155 ~~g~v~~~~~d  165 (319)
T d2dg1a1         155 PLGGVYYVSPD  165 (319)
T ss_dssp             CCEEEEEECTT
T ss_pred             CcceeEEEecc
Confidence            34557777765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.36  E-value=12  Score=30.24  Aligned_cols=77  Identities=14%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             eEEEEcCCeEEEEccCCCCCceeCcEEEEecCCCCccEEEeccCcCCCCCCCCCCCCCceEEEEeCCEEEEEeCcCCCCC
Q 027962           43 SLTRIGGNRTVLFGGRGVGYEVLNDVWFLDVYEGFFKWVQIPYELQNIPAGFSLPRVGHSATLILGGRVLIYGGEDSARR  122 (216)
Q Consensus        43 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~~~W~~~~~~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~  122 (216)
                      +=+++ ++.+|+....       +.|+.+|.++++..|+.-....................++ .++++|+..       
T Consensus        72 tPiv~-~g~vyv~t~~-------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~~~t-------  135 (573)
T d1kb0a2          72 TPVVV-DGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGA-------  135 (573)
T ss_dssp             CCEEE-TTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEEC-------
T ss_pred             CCEEE-CCEEEEECCC-------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-ECCcEEEEe-------
Confidence            33556 6789886433       4589999999888898641000000000011112223344 777777632       


Q ss_pred             CCCceEEEecCCC
Q 027962          123 RKDDFWVLDTKAI  135 (216)
Q Consensus       123 ~~~~~~~~~~~~~  135 (216)
                      .-..++++|.++-
T Consensus       136 ~~g~l~alda~tG  148 (573)
T d1kb0a2         136 WDGRLIALDAATG  148 (573)
T ss_dssp             TTSEEEEEETTTC
T ss_pred             cccceeeeccccc
Confidence            1346788888765