Citrus Sinensis ID: 027966

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Secondary Structure (PSIPRED)
cEEEEEccccccEEcHHHHHcccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccEEEEcHHHHHHHHHEEHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccHHHccc
Coil and Loop (DISEMBL)
MHCVLLNMLQATHMfdcfyidgatnTVTINMAIFFVMTDLDFLFHMFFLARYCKLLeensfrgrTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSkqnpfihmSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFledvyprmtgrrplktpsFIKALFADEAVvvarpanvrfapppaeevhqd
Flexible Loop (DISEMBL)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVrfapppaeevhqd
Low Complexity Region (SEG)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Disordered region (IsUnstruct)
**CVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANV*************
Disordered Region (DISOPRED)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAV*********************
Disordered Region (DISEMBL)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAP*********
Disordered Region (DISPRO)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADE***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHCVLLNMLQATHMFDCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q9ZS88	244	Derlin-2.2 OS=Arabidopsis	yes	no	0.851	0.754	0.853	8e-90
Q8VZ96	244	Derlin-2.1 OS=Arabidopsis	no	no	0.851	0.754	0.842	4e-87
Q851X7	249	Derlin-2 OS=Oryza sativa	yes	no	0.787	0.682	0.870	1e-83
Q4G2J3	249	Derlin-2.2 OS=Zea mays GN	N/A	no	0.787	0.682	0.864	3e-83
Q4G2J4	249	Derlin-2.1 OS=Zea mays GN	N/A	no	0.787	0.682	0.858	2e-82
Q5RC74	239	Derlin-2 OS=Pongo abelii	yes	no	0.680	0.615	0.509	3e-39
Q9GZP9	239	Derlin-2 OS=Homo sapiens	yes	no	0.680	0.615	0.509	3e-39
Q8BNI4	239	Derlin-2 OS=Mus musculus	yes	no	0.680	0.615	0.490	3e-38
Q54NN1	254	Probable derlin-2 homolog	yes	no	0.703	0.598	0.5	4e-38
Q21997	237	Derlin-2 OS=Caenorhabditi	yes	no	0.745	0.679	0.446	3e-33

>sp|Q9ZS88|DER22_ARATH Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1

 Score =  329 bits (844), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 157/184 (85%), Positives = 169/184 (91%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDF+FHMFFLARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           S SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct: 121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E
Sbjct: 181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 IHQD 244

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ96|DER21_ARATH Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=3

 Score =  320 bits (821), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 166/184 (90%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRG+TADFLYMLLFGAT LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           S SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct: 121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
            D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E
Sbjct: 181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 IHQD 244

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1

 Score =  309 bits (791), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/170 (87%), Positives = 157/170 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 202
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARP N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1

 Score =  307 bits (787), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/170 (86%), Positives = 157/170 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYI 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 202
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2

 Score =  305 bits (780), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/170 (85%), Positives = 156/170 (91%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYI 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S W
Sbjct: 121 SETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 202
           VDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct: 181 VDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Zea mays (taxid: 4577)

>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 12/159 (7%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L
Sbjct: 62  LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------L 110

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
              F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct: 111 FGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
           VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct: 171 VDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Pongo abelii (taxid: 9601)

>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1

 Score =  161 bits (407), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 108/159 (67%), Gaps = 12/159 (7%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L
Sbjct: 62  LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------L 110

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
              F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct: 111 FGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
           VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct: 171 VDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In contrast to DERL1, it is not involved in the degradation of MHC class I heavy chains following infection by cytomegaloviruses. May play a role in cell proliferation.

Homo sapiens (taxid: 9606)

>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 107/159 (67%), Gaps = 12/159 (7%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T           L
Sbjct: 62  LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------L 110

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
              F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct: 111 FGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
           VDLLG+  GH Y+FLED++P   G  R LKTPS ++ +F
Sbjct: 171 VDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209

Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal glycoproteins, but not that of misfolded nonglycoproteins. May act by forming a channel that allows the retrotranslocation of misfolded glycoproteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate.

Mus musculus (taxid: 10090)

>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 4/156 (2%)

Query: 34  FFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLS 93
           F+    ++F FHM+FL R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + +
Sbjct: 62  FYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYT 117

Query: 94  ESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWV 153
           +   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L            
Sbjct: 118 KIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTT 177

Query: 154 DLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKAL 189
           DLLG +AGHAYYFLED YP ++ RR LKTP F+K L
Sbjct: 178 DLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNL 213

May be involved in the degradation process of specific misfolded endoplasmic reticulum (ER) luminal proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q21997|DERL2_CAEEL Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 16/177 (9%)

Query: 45  HMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSN 104
           +M F  RYC +LEE SFRGR ADF+YM LFGA  +            LS  F +I+FL  
Sbjct: 72  NMIFTYRYCMMLEEGSFRGRRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQ 120

Query: 105 SLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAY 164
           + T+M+VY+WS++NP I M+F G+ TFTA YLPWVLL FS+ +G +A VD +G+  GH Y
Sbjct: 121 AFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIY 180

Query: 165 YFLEDVYP-RMTGRRPLKTPSFIKALFADEAVVV----ARPANVRFAPPPAEEVHQD 216
           +FLEDV+P +  G+R LKTP ++  LF +          RP    +     E+   D
Sbjct: 181 FFLEDVFPFQEHGKRFLKTPQWLVYLFDERRPEPLPEDERPGGFEWGDEQPEQEQHD 237

May be required for the degradation process of some specific misfolded endoplasmic reticulum (ER) luminal proteins. Participates in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner. Its precise function remains unclear, but its ability to complement der1 mutations in C.cerevisiae, suggests a similar function in the degradation of ER misfolded proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255554933	244	Derlin-2, putative [Ricinus communis] gi	0.851	0.754	0.923	2e-95
358248830	244	uncharacterized protein LOC100802618 [Gl	0.851	0.754	0.923	6e-95
356555644	244	PREDICTED: derlin-2.2-like isoform 1 [Gl	0.851	0.754	0.923	7e-95
356555646	214	PREDICTED: derlin-2.2-like isoform 2 [Gl	0.851	0.859	0.923	1e-94
449433946	244	PREDICTED: derlin-2.2-like [Cucumis sati	0.851	0.754	0.891	4e-92
388497810	244	unknown [Medicago truncatula] gi|3885112	0.851	0.754	0.896	1e-91
449479441	244	PREDICTED: LOW QUALITY PROTEIN: derlin-2	0.851	0.754	0.885	1e-91
388509296	244	unknown [Lotus japonicus]	0.851	0.754	0.891	2e-91
224078644	244	predicted protein [Populus trichocarpa]	0.851	0.754	0.869	3e-91
388500012	244	unknown [Medicago truncatula]	0.851	0.754	0.891	5e-91

>gi|255554933|ref|XP_002518504.1| Derlin-2, putative [Ricinus communis] gi|223542349|gb|EEF43891.1| Derlin-2, putative [Ricinus communis]

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 170/184 (92%), Positives = 175/184 (95%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDF+FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPL+TPSFIK+LFADE VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLRTPSFIKSLFADETVVVARPANVRFAPPPAEE 240

Query: 213 VHQD 216
           VHQD
Sbjct: 241 VHQD 244

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248830|ref|NP_001239947.1| uncharacterized protein LOC100802618 [Glycine max] gi|255638233|gb|ACU19430.1| unknown [Glycine max]

 Score =  352 bits (903), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 170/184 (92%), Positives = 175/184 (95%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 LHQD 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555644|ref|XP_003546140.1| PREDICTED: derlin-2.2-like isoform 1 [Glycine max]

 Score =  352 bits (902), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 170/184 (92%), Positives = 175/184 (95%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARPANVRFAPPPAEE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 LHQD 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555646|ref|XP_003546141.1| PREDICTED: derlin-2.2-like isoform 2 [Glycine max]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 170/184 (92%), Positives = 175/184 (95%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 31  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLLGGMIPYL 90

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 91  SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 150

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARPANVRFAPPPAEE
Sbjct: 151 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADDPVVVARPANVRFAPPPAEE 210

Query: 213 VHQD 216
           +HQD
Sbjct: 211 LHQD 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433946|ref|XP_004134757.1| PREDICTED: derlin-2.2-like [Cucumis sativus]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 173/184 (94%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           +FF   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LFFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SES A++IFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGM+AGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPA++RFA P AE+
Sbjct: 181 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAED 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 IHQD 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497810|gb|AFK36971.1| unknown [Medicago truncatula] gi|388511275|gb|AFK43699.1| unknown [Medicago truncatula]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 165/184 (89%), Positives = 171/184 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARPANVRFA P  EE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPANVRFAAPQPEE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 LHQD 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479441|ref|XP_004155600.1| PREDICTED: LOW QUALITY PROTEIN: derlin-2.2-like [Cucumis sativus]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/184 (88%), Positives = 172/184 (93%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           +FF   DLDF FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LTG VL+GGMIPYL
Sbjct: 61  LFFRKMDLDFXFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLVGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SES A++IFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESIAEVIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGM+AGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPA++RFA P AE+
Sbjct: 181 VDLLGMVAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPADLRFAAPAAED 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 IHQD 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509296|gb|AFK42714.1| unknown [Lotus japonicus]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 171/184 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARPANVRFA PP ++
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPANVRFAAPPVDD 240

Query: 213 VHQD 216
            HQD
Sbjct: 241 RHQD 244

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078644|ref|XP_002305588.1| predicted protein [Populus trichocarpa] gi|222848552|gb|EEE86099.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/184 (86%), Positives = 171/184 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDF+FHMFFLARYCKLLEENSFRGRTADF YMLLFGAT LT  V++GG IPYL
Sbjct: 61  LYFRKMDLDFMFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVIVGGNIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLG+FTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGIFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGM AGHAYYFLEDVYPRMTGRRPL+TP FIK++FADEAVVVARP N+RFAPPPAEE
Sbjct: 181 VDLLGMTAGHAYYFLEDVYPRMTGRRPLQTPGFIKSMFADEAVVVARPVNIRFAPPPAEE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 LHQD 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500012|gb|AFK38072.1| unknown [Medicago truncatula]

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 164/184 (89%), Positives = 170/184 (92%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F   DLDFLFHMFFLARYCKLLEENSFRGRTADF YMLLFGA+ LTG VL+GGMIPYL
Sbjct: 61  LYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGASVLTGIVLLGGMIPYL 120

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
           SESFAKIIFLSNSLT MMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSV VGASAW
Sbjct: 121 SESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVLVGASAW 180

Query: 153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
           VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPS IKALFAD+ VVVARP NVRFA P  EE
Sbjct: 181 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIKALFADDPVVVARPVNVRFAAPQPEE 240

Query: 213 VHQD 216
           +HQD
Sbjct: 241 LHQD 244

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2138952	244	DER2.2 "AT4G04860" [Arabidopsi	0.851	0.754	0.853	1.9e-83
TAIR|locus:2141652	244	DER2.1 "AT4G21810" [Arabidopsi	0.851	0.754	0.842	1.2e-81
UNIPROTKB|F6PVF9	239	DERL2 "Uncharacterized protein	0.680	0.615	0.515	8.7e-40
UNIPROTKB|Q9GZP9	239	DERL2 "Derlin-2" [Homo sapiens	0.680	0.615	0.515	8.7e-40
UNIPROTKB|Q5RC74	239	DERL2 "Derlin-2" [Pongo abelii	0.680	0.615	0.515	8.7e-40
UNIPROTKB|E1BX18	239	DERL2 "Uncharacterized protein	0.680	0.615	0.509	2.3e-39
DICTYBASE|DDB_G0285131	254	derl2 "derlin-2" [Dictyosteliu	0.824	0.700	0.459	2.9e-39
UNIPROTKB|E1C6U6	241	DERL3 "Uncharacterized protein	0.680	0.609	0.509	4.8e-39
ZFIN|ZDB-GENE-050522-90	239	derl2 "Der1-like domain family	0.680	0.615	0.503	4.8e-39
MGI|MGI:2151483	239	Derl2 "Der1-like domain family	0.680	0.615	0.496	6.1e-39

TAIR|locus:2138952 DER2.2 "AT4G04860" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 157/184 (85%), Positives = 169/184 (91%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             ++F   DLDF+FHMFFLARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYL
Sbjct:    61 LYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYL 120

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
             S SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct:   121 SASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
             VDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E
Sbjct:   181 VDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDE 240

Query:   213 VHQD 216
             +HQD
Sbjct:   241 IHQD 244

GO:0006508 "proteolysis" evidence=ISS

TAIR|locus:2141652 DER2.1 "AT4G21810" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 155/184 (84%), Positives = 166/184 (90%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             ++F   DLDFLFHMFFLARYCKLLEENSFRG+TADFLYMLLFGAT LTG VLIGGMIPYL
Sbjct:    61 LYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTADFLYMLLFGATVLTGIVLIGGMIPYL 120

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
             S SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW
Sbjct:   121 SVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAW 180

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEE 212
              D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E
Sbjct:   181 GDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDE 240

Query:   213 VHQD 216
             +HQD
Sbjct:   241 IHQD 244

GO:0003674 "molecular_function" evidence=ND

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|F6PVF9 DERL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 82/159 (51%), Positives = 109/159 (68%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T   L G      
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   171 VDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

UNIPROTKB|Q9GZP9 DERL2 "Derlin-2" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 82/159 (51%), Positives = 109/159 (68%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T   L G      
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   171 VDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IMP

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IDA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5RC74 DERL2 "Derlin-2" [Pongo abelii (taxid:9601)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 82/159 (51%), Positives = 109/159 (68%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T   L G      
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   171 VDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0030307 "positive regulation of cell growth" evidence=ISS

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISS

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISS

UNIPROTKB|E1BX18 DERL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 81/159 (50%), Positives = 110/159 (69%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T    I G+    
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT----IFGL---- 113

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   114 ---FVNLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLIFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH Y+FLEDV+P   G  R L+TPS +KA+F
Sbjct:   171 VDLLGIAVGHIYFFLEDVFPNQPGGGRLLRTPSVLKAIF 209

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

DICTYBASE|DDB_G0285131 derl2 "derlin-2" [Dictyostelium discoideum (taxid:44689)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 84/183 (45%), Positives = 118/183 (64%)

Query:    34 FFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLS 93
             F+    ++F FHM+FL R+ +LLEE+SFRGR+AD+L+M +FG+ FL   +LI     + +
Sbjct:    62 FYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGS-FL---LLIMDAFLFYT 117

Query:    94 ESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWV 153
             +   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L            
Sbjct:   118 KIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTT 177

Query:   154 DLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALF-ADEAVVVARPANVRFAPPPAEE 212
             DLLG +AGHAYYFLED YP ++ RR LKTP F+K L    E  +V             +E
Sbjct:   178 DLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNLMDGQEQPIVDAHQQQEVQQAQQQE 237

Query:   213 VHQ 215
             V Q
Sbjct:   238 VQQ 240

GO:0003674 "molecular_function" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=ISS

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|E1C6U6 DERL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 81/159 (50%), Positives = 107/159 (67%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF      F F+M FL RYC++LEE SFRGRTADF++M LFG   +T   L G      
Sbjct:    62 LFFGPLGFSFFFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                FA + FL  + T+M+VYVWS++NP+I M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --LFASLFFLGQAFTIMLVYVWSRRNPYIRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTG-RRPLKTPSFIKALF 190
             +DLLG+  GH YYFLEDV+P   G ++ L TPSF+K +F
Sbjct:   171 IDLLGIAVGHIYYFLEDVFPNQPGGKKLLLTPSFLKMVF 209

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

ZFIN|ZDB-GENE-050522-90 derl2 "Der1-like domain family, member 2" [Danio rerio (taxid:7955)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 80/159 (50%), Positives = 108/159 (67%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T   + G      
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGLLMT---IFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
               +F  ++FL  + T+M+VY+WS++NP + M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --TFVNLVFLGQAFTIMLVYIWSRRNPNVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH YYFLEDV+P   G  R L+TPS +K LF
Sbjct:   171 VDLLGIAVGHVYYFLEDVFPNQPGGGRWLRTPSILKMLF 209

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2151483 Derl2 "Der1-like domain family, member 2" [Mus musculus (taxid:10090)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 79/159 (49%), Positives = 108/159 (67%)

Query:    33 IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
             +FF     +FLF+M FL RYC++LEE SFRGRTADF++M LFG   +T   L G      
Sbjct:    62 LFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT---LFG------ 112

Query:    93 SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
                F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  
Sbjct:   113 --LFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSII 170

Query:   153 VDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 190
             VDLLG+  GH Y+FLED++P   G  R LKTPS ++ +F
Sbjct:   171 VDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209

GO:0001967 "suckling behavior" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO;IDA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q851X7	DERL2_ORYSJ	No assigned EC number	0.8705	0.7870	0.6827	yes	no
Q9ZS88	DER22_ARATH	No assigned EC number	0.8532	0.8518	0.7540	yes	no
Q9GZP9	DERL2_HUMAN	No assigned EC number	0.5094	0.6805	0.6150	yes	no
Q5RC74	DERL2_PONAB	No assigned EC number	0.5094	0.6805	0.6150	yes	no
Q4G2J4	DER21_MAIZE	No assigned EC number	0.8588	0.7870	0.6827	N/A	no
Q4G2J3	DER22_MAIZE	No assigned EC number	0.8647	0.7870	0.6827	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_IV1734	hypothetical protein (245 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00400185	hypothetical protein (228 aa)						•			0.800
	eugene3.00021229	hypothetical protein (227 aa)						•			0.800
	estExt_Genewise1_v1.C_LG_VII3310	hypothetical protein (230 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam04511	192	pfam04511, DER1, Der1-like family	1e-37
COG5291	313	COG5291, COG5291, Predicted membrane protein [Func	1e-22

>gnl|CDD|218120 pfam04511, DER1, Der1-like family

 Score =  129 bits (326), Expect = 1e-37
 Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 13/153 (8%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
            +F  T   FLF+++FL RY  +LE  SFRGR AD+LYML+FGA  +T    I G+I   
Sbjct: 50  FYFGNTGFHFLFNLYFLYRYSSMLENGSFRGRAADYLYMLIFGAVLIT----IFGLIVNA 105

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-ASA 151
                   FL   LT M+VYVWS++N  + ++F GL  F A+YLPWVLLGFS  +G  S+
Sbjct: 106 Y-------FLGQGLTAMIVYVWSRKNADVQVNFFGLIRFKASYLPWVLLGFSFLLGNRSS 158

Query: 152 WVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTP 183
            VDL+G++ GH YYF +DVYPR+  G+  LKTP
Sbjct: 159 LVDLMGILVGHLYYFFKDVYPRLPGGKDLLKTP 191

The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process. The mutant classes were called 'der' for 'degradation in the ER'. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein, that is localised to the ER. Deletion of DER1 abolished degradation of the substrate proteins. The function of the Der1 protein seems to be specifically required for the degradation process associated with the ER. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. Suggesting that this family may also mediate degradation of misfolded proteins (Bateman A pers. obs.). Length = 192

>gnl|CDD|227611 COG5291, COG5291, Predicted membrane protein [Function unknown]

 Score = 93.1 bits (231), Expect = 1e-22
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 12/159 (7%)

Query: 33  IFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYL 92
           ++F    LD   H++FL RY ++LEE  F     ++ + LL  +  +     I G I  L
Sbjct: 68  LYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTSLVEYFWYLLVISLVIFAISNIYGGISAL 127

Query: 93  SESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW 152
             SF+  I           Y+WSK+NP   + F G  +    YLP++LLGFS        
Sbjct: 128 GTSFSATI----------TYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGIS 177

Query: 153 V-DLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALF 190
           + D+LG + GH +++  D+YP M GR  L TP ++K LF
Sbjct: 178 IDDVLGFVVGHLFHYFGDIYP-MIGRDILSTPCWVKKLF 215

Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0858	239	consensus Predicted membrane protein [Function unk	100.0
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	100.0
COG5291	313	Predicted membrane protein [Function unknown]	100.0
KOG2632	258	consensus Rhomboid family proteins [Function unkno	98.67
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	97.49
PTZ00101	278	rhomboid-1 protease; Provisional	96.93
COG0705	228	Membrane associated serine protease [Amino acid tr	96.39
PRK10907	276	intramembrane serine protease GlpG; Provisional	96.24
KOG2890	326	consensus Predicted membrane protein [Function unk	90.29
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	84.26

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=4.1e-54  Score=367.22  Aligned_cols=179  Identities=55%  Similarity=0.947  Sum_probs=169.1

Q ss_pred             cceeehhhhhhcccccee---------ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHH
Q 027966            2 HCVLLNMLQATHMFDCFY---------IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYML   72 (216)
Q Consensus         2 ~~~~~t~~~~~~~~~~~~---------~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~L   72 (216)
                      .|+++|++.++.+++|..         +|+|+|| ++|+++|+|+++++++|+++|+||||++||+++|++|++||+||+
T Consensus        22 ~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWR-liTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~ml  100 (239)
T KOG0858|consen   22 ACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWR-LITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYML  100 (239)
T ss_pred             HHHHHHHHHhhcccCchheEecHHHHHhHhHHHH-hhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Confidence            589999999999998876         5899999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccchhHHHhHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhcchhH
Q 027966           73 LFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAW  152 (216)
Q Consensus        73 l~~~~~i~~~s~~~~~~~y~~~~~~~~~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~~s~~  152 (216)
                      +++++++.+.+           .+.+.++|+++|+.+++|+|||+||+.+||++|++++||+|+||++++++++.+++.+
T Consensus       101 lf~~~l~~~~~-----------~~~~~~fLg~~l~~~l~YvWs~~Np~~~v~F~g~~~f~a~YlPwvll~fs~l~g~~~~  169 (239)
T KOG0858|consen  101 LFGAVLLTLTG-----------LFVYIVFLGQSLVFMLVYVWSKRNPDVIVSFFGLITFKAPYLPWVLLGFSFLFGGSIL  169 (239)
T ss_pred             HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEecCccccchHHHHHHHHHhCCchH
Confidence            99999888663           2457889999999999999999999999999999999999999999999999998779


Q ss_pred             HHHHHhhHHHHHHHhhhhccCCC-CCCCcCChHHHHHhhcc
Q 027966          153 VDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPSFIKALFAD  192 (216)
Q Consensus       153 ~~liGi~~GHly~fL~~i~P~~~-g~~~l~TP~fl~~l~~~  192 (216)
                      .|++||++||+|+|++|++|+.. |+|++|||+|++|++++
T Consensus       170 ~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~  210 (239)
T KOG0858|consen  170 VDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFAD  210 (239)
T ss_pred             HHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCC
Confidence            99999999999999999999954 69999999999999998

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=100.00  E-value=4.8e-49  Score=331.69  Aligned_cols=176  Identities=43%  Similarity=0.828  Sum_probs=160.7

Q ss_pred             cceeehhhhhhcccccee---------ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHH
Q 027966            2 HCVLLNMLQATHMFDCFY---------IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYML   72 (216)
Q Consensus         2 ~~~~~t~~~~~~~~~~~~---------~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~L   72 (216)
                      .++++|++++++.+||..         ++.|+|| ++|+++++|+.|+++++++|++++||++||+++|++|++||+|++
T Consensus        11 ~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WR-l~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~l   89 (197)
T PF04511_consen   11 STVALSLLVSFGIISPYYLYFDWELVFKKFQIWR-LFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFL   89 (197)
T ss_pred             HHHHHHHHHHCCCCCHHHeeECcHHHhhhcCcee-eEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHH
Confidence            367788899999887663         5799999 999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccccchhHHHhHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhcc-hh
Q 027966           73 LFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGA-SA  151 (216)
Q Consensus        73 l~~~~~i~~~s~~~~~~~y~~~~~~~~~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~~-s~  151 (216)
                      +++++++.+++.+.+      ....+.++++++++.+++|+|||+||+++||++|++++||+|+||+++++++++++ +.
T Consensus        90 l~~~~~i~~~~~~~~------~~~~~~~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~ylP~~~~~~~~l~~~~~~  163 (197)
T PF04511_consen   90 LFGASLILILSLLIG------PYFFNIPFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYLPWVLLAFSLLFGGSSP  163 (197)
T ss_pred             HHHHHHHHHHHHhhc------cchhHHHHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhHHHHHHHHHHHhCCCcH
Confidence            999999988865431      11246689999999999999999999999999999999999999999999999987 89


Q ss_pred             HHHHHHhhHHHHHHHhhhhccCCC-CCCCcCChH
Q 027966          152 WVDLLGMIAGHAYYFLEDVYPRMT-GRRPLKTPS  184 (216)
Q Consensus       152 ~~~liGi~~GHly~fL~~i~P~~~-g~~~l~TP~  184 (216)
                      ..|++||++||+|||++|++|+.+ |+|+||||+
T Consensus       164 ~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~  197 (197)
T PF04511_consen  164 IPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ  197 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence            999999999999999999999975 899999995

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>COG5291 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=8.3e-38  Score=267.63  Aligned_cols=177  Identities=30%  Similarity=0.619  Sum_probs=159.3

Q ss_pred             eeehhhhhhcccccee---------ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHH
Q 027966            4 VLLNMLQATHMFDCFY---------IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLF   74 (216)
Q Consensus         4 ~~~t~~~~~~~~~~~~---------~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~   74 (216)
                      .++|++....+++|++         ++.|+|| ++||+.++|+..++.+|++|++|+||+.||+++|...-.||+|||++
T Consensus        31 ~a~til~~~~lvsPwy~ly~~pL~~k~~qiwR-lfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~lv~Y~~yl~~  109 (313)
T COG5291          31 SAVTILVYVDLVSPWYSLYYSPLFLKRLQIWR-LFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTSLVEYFWYLLV  109 (313)
T ss_pred             HHHHHHHHHhhcCccceeeechhHHHHHHHHH-HHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence            4678888888888855         5799999 99999999999999999999999999999999998666799999999


Q ss_pred             HHHHHHHHHHhhcccccccchhHHHhHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhc-chhHH
Q 027966           75 GATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-ASAWV  153 (216)
Q Consensus        75 ~~~~i~~~s~~~~~~~y~~~~~~~~~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~-~s~~~  153 (216)
                      +..+|..++.+.+          +..-|+++++.+++|+||++||+.+++|+|+|+++++|+|+++++++++.+ +....
T Consensus       110 ~~l~i~a~s~I~g----------g~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYlP~Illgfsfl~~~g~~i~  179 (313)
T COG5291         110 ISLVIFAISNIYG----------GISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYLPFILLGFSFLSRRGISID  179 (313)
T ss_pred             HHHHHHHHHHHhc----------chhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhhhHHHHHHHHHhcCCccce
Confidence            9999988876632          234589999999999999999999999999999999999999999999998 78899


Q ss_pred             HHHHhhHHHHHHHhhhhccCCCCCCCcCChHHHHHhhcc
Q 027966          154 DLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFAD  192 (216)
Q Consensus       154 ~liGi~~GHly~fL~~i~P~~~g~~~l~TP~fl~~l~~~  192 (216)
                      |++|+.+||..+++.++||+. |++.+.||.|.++++.+
T Consensus       180 ~vlGf~~g~~~h~~g~I~~mi-~r~~~~t~~~~~~~~~~  217 (313)
T COG5291         180 DVLGFVVGHLFHYFGDIYPMI-GRDILSTPCWVKKLFNE  217 (313)
T ss_pred             eeeeeeeccccccccchhhhh-hcccCCCcccccccccC
Confidence            999999999999999999987 67788888888777644

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=98.67  E-value=1.2e-07  Score=82.84  Aligned_cols=147  Identities=25%  Similarity=0.303  Sum_probs=102.5

Q ss_pred             ceeecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchh
Q 027966           17 CFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESF   96 (216)
Q Consensus        17 ~~~~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~   96 (216)
                      ....+.|.|| ++|..++.... +++++++.-+..-++..|+.+  |.++-++.+..+.+..=-++.++..-..+.....
T Consensus        46 ~~l~~~ql~R-L~Ty~l~H~s~-~hllfnmlaL~~~g~~fE~~~--G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~  121 (258)
T KOG2632|consen   46 ELLINWQLYR-LITYALVHLSL-PHLLFNMLALWPLGSQFERTH--GTTVRILMFTVLLALFSGILYLLAYHVFLLSDLV  121 (258)
T ss_pred             HHhhhHHHHH-HHHHHHHhccH-HHHHHHHHHHHhchhHHHhhc--cceehHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            3346799999 99999987755 899999999999999999987  6688888777555432111111111000000000


Q ss_pred             HHHhHHH-HHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHH-HHhc-chhHHHHHHhhHHHHHHHh
Q 027966           97 AKIIFLS-NSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFS-VFVG-ASAWVDLLGMIAGHAYYFL  167 (216)
Q Consensus        97 ~~~~fL~-~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~-~l~~-~s~~~~liGi~~GHly~fL  167 (216)
                      ....--| +.-.++++=+-+-+.|..+.+++|.+++|++|-||+++++. ++.. .|++..+.|+++|..|-+.
T Consensus       122 ~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  122 YVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             hhcccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence            0000001 22334555555778899999999999999999999999888 5565 4999999999999999994

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.49  E-value=0.00039  Score=54.37  Aligned_cols=140  Identities=17%  Similarity=0.102  Sum_probs=73.3

Q ss_pred             ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHH-
Q 027966           20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAK-   98 (216)
Q Consensus        20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~-   98 (216)
                      .+.|+|| ++|+.+..++. .+++++++.++..+..+|+..   .+.++.-..+..+..-.+......-...   +..+ 
T Consensus         2 ~~~~~wr-l~T~~f~h~~~-~hl~~n~~~l~~~g~~lE~~~---G~~~~~~~~l~~~~~~~l~~~~~~~~~~---~~~G~   73 (145)
T PF01694_consen    2 QNGQWWR-LFTSPFVHANF-LHLLFNLLALWFFGSLLERRL---GSRRFLALYLLSGLLGSLLSLLFSPPNQ---PYVGA   73 (145)
T ss_dssp             GCC-TTH-HHHGGG--SSH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-S--------SS
T ss_pred             CCCcchh-hhHHHHHccCH-HHHHHHHHHHHHhhhhHhhhc---cchHHHHHHHHHHHhhhhcccccccccc---ccCCC
Confidence            3689999 99999887655 999999999999999999886   3445544443333322222211110000   0000 


Q ss_pred             HhHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhcchhHHHHHHhhHHHHHHHhhhh
Q 027966           99 IIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDV  170 (216)
Q Consensus        99 ~~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~~s~~~~liGi~~GHly~fL~~i  170 (216)
                      ..-....+.......+.++... +. ....+.+...+++..+.... ..+.+...++.|+++|-++-+.-..
T Consensus        74 Sg~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~hl~G~~~G~~~~~~~~~  142 (145)
T PF01694_consen   74 SGAVFGLLGAFLFLYPQNKKRL-RF-IYLALVVPIIVLVIILLLGF-IPNISFLGHLGGFLAGLLYGFLILR  142 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCS-----HCCCCCCCCCCCHHHCTSS-SSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred             cccchHHHHHHHHHHhhccchh-hc-chHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111112222222222222222 11 22234555556665555443 2234778899999999998876443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>PTZ00101 rhomboid-1 protease; Provisional

Probab=96.93  E-value=0.0041  Score=55.47  Aligned_cols=55  Identities=20%  Similarity=0.244  Sum_probs=42.4

Q ss_pred             cceeecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHH-HHHHHH
Q 027966           16 DCFYIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFL-YMLLFG   75 (216)
Q Consensus        16 ~~~~~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl-~~Ll~~   75 (216)
                      ++....+|+|| ++|+.|..++ -++.++++++++..++.+|+..   .+..|. -|++-+
T Consensus        94 ~~~i~~gq~WR-LiT~~FlH~~-~~HLl~Nm~~l~~~G~~lE~~~---G~~r~~ilYl~sG  149 (278)
T PTZ00101         94 ASRIKQGEIHR-LILPIFLHAN-IFHTFFNVFFQLRMGFTLEKNY---GIVKIIILYFLTG  149 (278)
T ss_pred             hhhhhcCCCHH-HHHHHHHccC-HHHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHH
Confidence            34445799999 9999888765 4899999999999999999986   455665 444333

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=96.39  E-value=0.019  Score=48.81  Aligned_cols=133  Identities=23%  Similarity=0.200  Sum_probs=88.7

Q ss_pred             cccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHHHhHH
Q 027966           23 ATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFL  102 (216)
Q Consensus        23 q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~~~fL  102 (216)
                      |+|| ++|+-|..++. .+.++|+..++.+.+.+|+..   .+..|+.+.+.++..-.+.....+...+       .+.+
T Consensus        67 ~~w~-lit~~FlH~~~-~Hll~N~~~l~~fg~~le~~~---G~~~f~~~yl~~gl~~~~~~~~~~~~~~-------~~~~  134 (228)
T COG0705          67 QLWR-LITAIFLHAGF-LHLLFNMLALWVFGSNLERRL---GTLRFLLFYLLSGLLAGLAQVLFGPKGG-------APSL  134 (228)
T ss_pred             chHH-HHHHHHHHhhH-HHHHHHHHHHHHhhHHHHHHh---chhHHHHHHHHHHHHHHHHHHHHccccc-------Cccc
Confidence            8999 89998887766 889999999999999999976   3444666666655543333322211110       1111


Q ss_pred             H-HHHHHHHHHHhhhcCCCceeEEEEe-ecccccchHHHHHHHHHHhcc-h------hHHHHHHhhHHHHHHHh
Q 027966          103 S-NSLTLMMVYVWSKQNPFIHMSFLGL-FTFTAAYLPWVLLGFSVFVGA-S------AWVDLLGMIAGHAYYFL  167 (216)
Q Consensus       103 ~-~~L~~~liYiWsr~np~~~V~~~G~-~~i~a~ylP~~~l~~~~l~~~-s------~~~~liGi~~GHly~fL  167 (216)
                      | +.-...++=.++...|..++..... ++.++..+=.+.++.+++.+. +      ...++-|.+.|=++-.+
T Consensus       135 GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~  208 (228)
T COG0705         135 GASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAAL  208 (228)
T ss_pred             chhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            1 3334445555566777777776644 666667777777778887652 2      56788999999888765

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=96.24  E-value=0.045  Score=48.79  Aligned_cols=132  Identities=16%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 027966           20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKI   99 (216)
Q Consensus        20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~~   99 (216)
                      ...|+|| ++|+-|..++. ++.+||++.++..++.+|+..   .+..++...+..++.=-+......      .+  ..
T Consensus       131 ~~~q~WR-l~T~~flH~~~-~Hl~fNml~l~~lG~~iE~~~---G~~~~l~l~l~s~i~~~~~~~~~~------~~--~~  197 (276)
T PRK10907        131 LKFELWR-YFTHALLHFSL-LHILFNLLWWWYLGGAVEKRL---GSGKLIVITLISALLSGWVQSKFS------GP--WF  197 (276)
T ss_pred             ccCCcHH-HHhHHHHhCCH-HHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHHHHHHHHHHHc------cc--hh
Confidence            3689999 99999887765 899999999999999999875   456666555544432111111110      10  00


Q ss_pred             hHHHHHHHHHHHHHhhh--cCCCceeEEEEeecccccchHHHHHHHH--H--Hhcc--hhHHHHHHhhHHHHHHHhhhh
Q 027966          100 IFLSNSLTLMMVYVWSK--QNPFIHMSFLGLFTFTAAYLPWVLLGFS--V--FVGA--SAWVDLLGMIAGHAYYFLEDV  170 (216)
Q Consensus       100 ~fL~~~L~~~liYiWsr--~np~~~V~~~G~~~i~a~ylP~~~l~~~--~--l~~~--s~~~~liGi~~GHly~fL~~i  170 (216)
                      .=++-++...+.|+|-+  ++|+..+      .+|..++-++.+-+-  +  +.+.  +-..++.|.++|-+.-+++..
T Consensus       198 gGaSGvVygL~g~~~~~~~~~p~~~~------~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        198 GGLSGVVYALMGYVWLRGERDPQSGI------YLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             hHHHHHHHHHHHHHHHHhccccccch------hhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence            01445555666677754  4554322      334444443333111  1  1121  336678888888877666433

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=90.29  E-value=0.56  Score=42.46  Aligned_cols=145  Identities=21%  Similarity=0.184  Sum_probs=95.1

Q ss_pred             ccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHH---
Q 027966           22 GATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAK---   98 (216)
Q Consensus        22 ~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~---   98 (216)
                      ...|+ ++|+. |++.--++.+.++.-+.-+++.+|.+-   .+.+++.+..+...+..+...+..+..|  ....+   
T Consensus        65 ~~~Wt-liTs~-fie~~vw~V~~sv~~L~v~G~~lEp~W---g~~e~lkff~ivn~~~~l~v~v~~~l~Y--~it~n~v~  137 (326)
T KOG2890|consen   65 FFPWT-LITSG-FIELNVWDVLVSVLTLSVGGKFLEPNW---GSLELLKFFAIVNGSTTLVVLVPALLLY--MITDNHVY  137 (326)
T ss_pred             hhhHH-HHhcc-hhhhhHHHHHHHHHheeecceeeccCC---CCHHHHHHHHHhhchhHHHHHHHHHHHH--HHhcCceE
Confidence            57899 89995 668888999999999999999999875   4555555544332221111111111111  00000   


Q ss_pred             --HhHH-HHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhc-------chhHHHHHHhhHHHHHHHhh
Q 027966           99 --IIFL-SNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-------ASAWVDLLGMIAGHAYYFLE  168 (216)
Q Consensus        99 --~~fL-~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~-------~s~~~~liGi~~GHly~fL~  168 (216)
                        +++- .......+.-.|-|.-|+..|--.=.-.++++-+|...+.++++..       .++..-..|..++-.|..+-
T Consensus       138 L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfy  217 (326)
T KOG2890|consen  138 LYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFY  217 (326)
T ss_pred             EEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheec
Confidence              1110 1345556777899999998776554456666679999888887754       24566778999999999888


Q ss_pred             hhccC
Q 027966          169 DVYPR  173 (216)
Q Consensus       169 ~i~P~  173 (216)
                      .-.|.
T Consensus       218 q~h~~  222 (326)
T KOG2890|consen  218 QRHPT  222 (326)
T ss_pred             ccCCc
Confidence            88883

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=84.26  E-value=2.9  Score=31.50  Aligned_cols=51  Identities=18%  Similarity=0.168  Sum_probs=42.9

Q ss_pred             cccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHH
Q 027966           23 ATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATF   78 (216)
Q Consensus        23 q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~   78 (216)
                      .+|+ ++|+.++ ...-+..+++...+.-.++.+|+.-   .+.+++.+++++.+.
T Consensus         7 ~pWt-l~T~~fv-e~~i~~~l~~~~~l~~~g~~lE~~W---Gs~E~lkFi~vv~~~   57 (99)
T PF08551_consen    7 YPWT-LFTAGFV-ETNIIGLLFSLLTLFYGGRYLEPIW---GSREFLKFILVVNVI   57 (99)
T ss_pred             ehHH-HHHHHHH-HhHHHHHHHHHHHHHHhhHHHHHhc---ChHHHHHHHHHHHHH
Confidence            7899 9999766 5556889999999999999999875   588999998877654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	98.14
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	96.64

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=98.14  E-value=1.3e-05  Score=65.23  Aligned_cols=132  Identities=12%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             eecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHH
Q 027966           19 YIDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAK   98 (216)
Q Consensus        19 ~~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~   98 (216)
                      ..+.|+|| ++|+.|..++. .++++|++.++..++.+|+..   .+.+|+.+.+.+++.-.+.+...+-.+.+ +    
T Consensus        40 ~~~~~~wr-l~T~~f~H~~~-~Hl~~Nm~~l~~~g~~~E~~~---G~~~fl~~yl~~~i~~~l~~~~~~~~~~v-G----  109 (181)
T 2xov_A           40 TLKFEFWR-YFTHALMHFSL-MHILFNLLWWWYLGGAVEKRL---GSGKLIVITLISALLSGYVQQKFSGPWFG-G----  109 (181)
T ss_dssp             GGTTCTTH-HHHGGGCCCSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCC-C----
T ss_pred             ccCCCCHH-HHHHHHHccCH-HHHHHHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHhcCCCce-e----
Confidence            45689999 99999998877 999999999999999999875   46788776665554333332221100000 0    


Q ss_pred             HhHHHHHHHHHHHH--HhhhcCCCceeEEEEeecccccchHHHHHHHHHHh----cchhHHHHHHhhHHHHHHHh
Q 027966           99 IIFLSNSLTLMMVY--VWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFV----GASAWVDLLGMIAGHAYYFL  167 (216)
Q Consensus        99 ~~fL~~~L~~~liY--iWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~----~~s~~~~liGi~~GHly~fL  167 (216)
                         .+.+....+.+  +.+|++|+.++.    ++.+...+-.+.++.++..    +-+...++-|+++|.++-.+
T Consensus       110 ---aSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~  177 (181)
T 2xov_A          110 ---LSGVVYALMGYVWLRGERDPQSGIY----LQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFV  177 (181)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHhhCcCceee----eHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence               01111112222  246788887653    2222222212223344332    23678899999999998765

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=96.64  E-value=0.0074  Score=49.36  Aligned_cols=133  Identities=11%  Similarity=0.180  Sum_probs=76.4

Q ss_pred             ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHhhcccccccchhHHH
Q 027966           20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKI   99 (216)
Q Consensus        20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~~~i~~~s~~~~~~~y~~~~~~~~   99 (216)
                      ...|+|| ++|+-|..++. .++++|++.++..++.+|+..   .+..|+...+.+++.-.+.+....-.+.+ + ..+.
T Consensus        46 ~~~~~wr-l~T~~flH~~~-~Hl~~Nm~~l~~~G~~lE~~~---G~~~~l~~yl~~~~~~~l~~~~~~~~~~v-G-aSGa  118 (196)
T 2nr9_A           46 QDSEVWR-YISHTLVHLSN-LHILFNLSWFFIFGGMIERTF---GSVKLLMLYVVASAITGYVQNYVSGPAFF-G-LSGV  118 (196)
T ss_dssp             GGGCTTH-HHHGGGCCSSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHCSCCC-C-SHHH
T ss_pred             ccCCcHH-HHHHHHHccCH-HHHHHHHHHHHHHHHHHHHHH---ChHHHHHHHHHHHHHHHHHHHHhcCCCee-e-HHHH
Confidence            5689999 99999888765 999999999999999999875   45677665555443322222221100000 0 0011


Q ss_pred             hHHHHHHHHHHHHHhhhcCCCceeEEEEeecccccchHHHHHHHHHHhc-----chhHHHHHHhhHHHHHHHhh
Q 027966          100 IFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVG-----ASAWVDLLGMIAGHAYYFLE  168 (216)
Q Consensus       100 ~fL~~~L~~~liYiWsr~np~~~V~~~G~~~i~a~ylP~~~l~~~~l~~-----~s~~~~liGi~~GHly~fL~  168 (216)
                       .. ..+...++  ..+++|+. +    .++.+...+-.+.++++++..     -+...++-|.++|-++-++.
T Consensus       119 -i~-gl~g~~~~--~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~  183 (196)
T 2nr9_A          119 -VY-AVLGYVFI--RDKLNHHL-F----DLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFID  183 (196)
T ss_dssp             -HH-HHHHHHHH--HHHSSTTS-C----CCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -HH-HHHHHHHH--HHHhcchh-h----cchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHH
Confidence             11 11111122  24555654 1    133444333333344555432     26788999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	97.65
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	97.11

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=4.9e-05  Score=59.25  Aligned_cols=52  Identities=12%  Similarity=0.181  Sum_probs=41.5

Q ss_pred             ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHHH
Q 027966           20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFGA   76 (216)
Q Consensus        20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~~   76 (216)
                      .++|+|| ++|+.+..++. .++++|+..++..++.+|+..   .+.+++...+.++
T Consensus        41 ~~g~~wr-l~T~~f~H~~~-~Hl~~N~~~l~~~G~~lE~~~---G~~~~~~~~~~~~   92 (180)
T d3b45a1          41 LKFEFWR-YFTHALMHFSL-MHILFNLLWWWYLGGAVEKRL---GSGKLIVITLISA   92 (180)
T ss_dssp             GTTCGGG-GTGGGGCCCSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH
T ss_pred             ccCchHH-HHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHhc---cchhheeeeeHHH
Confidence            5689999 99998887654 999999999999999999875   4566655544443

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=97.11  E-value=0.0011  Score=51.80  Aligned_cols=51  Identities=14%  Similarity=0.298  Sum_probs=41.6

Q ss_pred             ecccccchhhccceecCCCCHHHHHHHHHHHHHhhhhhhcCCCCCchhHHHHHHHH
Q 027966           20 IDGATNTVTINMAIFFVMTDLDFLFHMFFLARYCKLLEENSFRGRTADFLYMLLFG   75 (216)
Q Consensus        20 ~~~q~wR~liTsf~f~G~~sl~~l~~l~fl~~yss~LE~~~f~~~~aDyl~~Ll~~   75 (216)
                      .+.|+|| ++|+.|..++. .++++|++.+...++.+|+..   .+.+++...+..
T Consensus        43 ~~~~~wr-l~T~~f~H~~~-~Hl~~N~~~l~~~g~~~E~~~---G~~~~~~~~~~~   93 (189)
T d2nr9a1          43 QDSEVWR-YISHTLVHLSN-LHILFNLSWFFIFGGMIERTF---GSVKLLMLYVVA   93 (189)
T ss_dssp             GGGCTTH-HHHGGGCCSSH-HHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHH
T ss_pred             ccCchHH-hHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHH
Confidence            4689999 99998887665 999999999999999999876   466666554433