Citrus Sinensis ID: 027989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCAR
Secondary Structure (PSIPRED)
cHHHHHHcccccccccccEEEEEEccccEEcccccEEcccHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEcccHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccHHHHEccccccccccccccccHHHHHHccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccccEEEEEcccHHHHHHHHHHcccccccccccccccEEEEEEcccccccHHHcccccHccccEEEEEEEccEEEEEccccHcHHHHHHHHHHHHcHHHHcccccccccc
Coil and Loop (DISEMBL)
mlsrklkqlcfpgrafsygLNWAlagrgvvvndkafqNLTTSELQQKGATIaeslsglpvyvrgnllggssdISKAQYAKLLKQVTAHLSSIANVFvqdgavgsssecdakvrvisdspsAVLKLSSIlwktpsravshdscpltvYVTTsispgvvnavglraqgdngfiaADIERSSLIlcgkgfsdaNGVKEALAALSGPVIIARGGLLLCAR
Flexible Loop (DISEMBL)
mlsrklkqLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKvrvisdspsaVLKLSSIlwktpsravshdsCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALaalsgpviiaRGGLLLCAR
Low Complexity Region (SEG)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCAR
Disordered region (IsUnstruct)
******KQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLC**
Disordered Region (DISOPRED)
*************RAFSYGLNWALAGRGVVVNDKAFQNLTTSEL****************YVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL***
Disordered Region (DISEMBL)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCAR
Disordered Region (DISPRO)
*LSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
359489873	439	PREDICTED: uncharacterized protein LOC10	0.953	0.469	0.754	4e-87
255558073	380	conserved hypothetical protein [Ricinus	0.939	0.534	0.704	7e-78
58532129	485	OSJNBa0009P12.18 [Oryza sativa Japonica	0.935	0.416	0.658	3e-70
116311041	368	OSIGBa0142I02-OSIGBa0101B20.15 [Oryza sa	0.935	0.548	0.658	4e-70
222629458	435	hypothetical protein OsJ_15984 [Oryza sa	0.902	0.448	0.676	6e-70
115460232	367	Os04g0592500 [Oryza sativa Japonica Grou	0.902	0.531	0.676	8e-70
218195467	435	hypothetical protein OsI_17201 [Oryza sa	0.902	0.448	0.671	3e-69
326510085	432	predicted protein [Hordeum vulgare subsp	0.902	0.451	0.656	5e-69
449460742	391	PREDICTED: uncharacterized protein LOC10	0.944	0.521	0.637	6e-69
357165607	431	PREDICTED: uncharacterized protein LOC10	0.902	0.452	0.635	3e-68

>gi|359489873|ref|XP_002270810.2| PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera] gi|297737287|emb|CBI26488.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 185/208 (88%), Gaps = 2/208 (0%)

Query: 11  FP--GRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLG 68
           FP  G  FSYGLNWALAG+GV+VNDKAF+NL +SELQQKGATIAESLSGLP++VRG++LG
Sbjct: 46  FPREGPGFSYGLNWALAGKGVIVNDKAFRNLKSSELQQKGATIAESLSGLPIHVRGDVLG 105

Query: 69  GSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSI 128
           G+S+I KAQ++KLLKQVTAHLSSI++++V DGA+GSSS+CDAKVRVISDSPSAVL LS++
Sbjct: 106 GASEIPKAQFSKLLKQVTAHLSSISDIYVHDGAIGSSSKCDAKVRVISDSPSAVLSLSNV 165

Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFS 188
           LWKTP+RAVSHDSCPLTVY+ +S+SPG V A G+ +QG NG IAADIERSSLIL GK FS
Sbjct: 166 LWKTPTRAVSHDSCPLTVYIASSLSPGAVEAAGIGSQGKNGLIAADIERSSLILSGKAFS 225

Query: 189 DANGVKEALAALSGPVIIARGGLLLCAR 216
           D NG+K ALAAL GP+I ARGGL L AR
Sbjct: 226 DTNGIKTALAALCGPIISARGGLPLSAR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558073|ref|XP_002520065.1| conserved hypothetical protein [Ricinus communis] gi|223540829|gb|EEF42389.1| conserved hypothetical protein [Ricinus communis]

 Score =  295 bits (756), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 169/203 (83%)

Query: 13  GRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSD 72
           G  FSYGLNWALA +GV+V DKAF+NL +S+L QKGATI+ESLSGLPV++RGN+LGG+S+
Sbjct: 7   GSGFSYGLNWALAVKGVIVKDKAFKNLNSSQLHQKGATISESLSGLPVHIRGNVLGGTSE 66

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKT 132
           ISK Q+ KLLKQVT HLSS+++V+V DGA+GSSS+C  KVRVISDSPSA+L LS+ILW+ 
Sbjct: 67  ISKQQFGKLLKQVTTHLSSVSDVYVHDGAIGSSSKCGTKVRVISDSPSAILSLSNILWEV 126

Query: 133 PSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANG 192
           PSRA+SHDSCPLTVYV TS+S G V+AVGL AQ + G IAADIER SL+LCGK FSD N 
Sbjct: 127 PSRAISHDSCPLTVYVATSVSQGAVDAVGLGAQANKGVIAADIERFSLVLCGKAFSDINA 186

Query: 193 VKEALAALSGPVIIARGGLLLCA 215
            KEAL  LS PVI A G L L A
Sbjct: 187 TKEALTTLSEPVIFALGDLPLPA 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58532129|emb|CAE04131.3| OSJNBa0009P12.18 [Oryza sativa Japonica Group]

 Score =  270 bits (690), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 164/202 (81%)

Query: 10  CFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGG 69
           C   +  SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G
Sbjct: 39  CREDQEVSYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISG 98

Query: 70  SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSIL 129
             D+S+AQ+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+IL
Sbjct: 99  IPDVSRAQFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNIL 158

Query: 130 WKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSD 189
           WKTP R++SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D
Sbjct: 159 WKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFAD 218

Query: 190 ANGVKEALAALSGPVIIARGGL 211
           +  +K AL+AL+ PV+ ARGGL
Sbjct: 219 SAMLKGALSALTAPVLSARGGL 240

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311041|emb|CAH67972.1| OSIGBa0142I02-OSIGBa0101B20.15 [Oryza sativa Indica Group]

 Score =  270 bits (689), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 164/202 (81%)

Query: 10  CFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGG 69
           C   +  SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G
Sbjct: 39  CREDQEVSYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISG 98

Query: 70  SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSIL 129
             D+S+AQ+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+IL
Sbjct: 99  IPDVSRAQFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNIL 158

Query: 130 WKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSD 189
           WKTP R++SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D
Sbjct: 159 WKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFAD 218

Query: 190 ANGVKEALAALSGPVIIARGGL 211
           +  +K AL+AL+ PV+ ARGGL
Sbjct: 219 SAMLKGALSALTAPVLSARGGL 240

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629458|gb|EEE61590.1| hypothetical protein OsJ_15984 [Oryza sativa Japonica Group]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 162/195 (83%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460232|ref|NP_001053716.1| Os04g0592500 [Oryza sativa Japonica Group] gi|113565287|dbj|BAF15630.1| Os04g0592500 [Oryza sativa Japonica Group] gi|215694978|dbj|BAG90169.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 162/195 (83%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195467|gb|EEC77894.1| hypothetical protein OsI_17201 [Oryza sativa Indica Group]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 161/195 (82%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL L +ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLYNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510085|dbj|BAJ87259.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  266 bits (679), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 159/195 (81%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+A RGVVV DK F NL  SELQ+ G T AE LSG P++V+GN++GG  DIS+ 
Sbjct: 40  SYGLNWAIATRGVVVKDKVFYNLEPSELQKSGTTCAERLSGTPLHVKGNVIGGFPDISRG 99

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLKQVT HLSSI++++VQDGA+GSS+ECDAKVRVISD+PSA++ LS+IL KTP RA
Sbjct: 100 QFAKLLKQVTFHLSSISSLYVQDGAIGSSTECDAKVRVISDNPSAIMSLSNILQKTPDRA 159

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V NA+G   Q  NG   ADIERSSLILCGK F+D+  +K+A
Sbjct: 160 ISHDTCPLTIYVASSISTNVRNALGSGTQYANGVAVADIERSSLILCGKAFADSAMLKDA 219

Query: 197 LAALSGPVIIARGGL 211
           L AL+ P++ ARGGL
Sbjct: 220 LTALAAPILSARGGL 234

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460742|ref|XP_004148104.1| PREDICTED: uncharacterized protein LOC101222903 [Cucumis sativus]

 Score =  266 bits (679), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 130/204 (63%), Positives = 157/204 (76%)

Query: 13  GRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSD 72
           G   S+GLN ALAG+GV+V DK FQNL +SEL QKGAT+AE LSG P++VRG+   GSS+
Sbjct: 3   GSWHSHGLNSALAGKGVLVLDKVFQNLKSSELFQKGATVAEFLSGFPIHVRGHTFQGSSN 62

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKT 132
           ISK Q+ KLLKQVT+H+SSI+N++V DGA+G  S  +  +R+ISD PS+VL  S+I+W+T
Sbjct: 63  ISKPQFTKLLKQVTSHISSISNIYVHDGAIGPRSTGNVNIRMISDGPSSVLAFSNIIWET 122

Query: 133 PSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANG 192
            SRA+S DSCPLTVY   SISPGV N++GL  +GD GFIAADIE S LILCG  FSD NG
Sbjct: 123 SSRAISQDSCPLTVYSAESISPGVRNSIGLGTEGDKGFIAADIEHSMLILCGTAFSDING 182

Query: 193 VKEALAALSGPVIIARGGLLLCAR 216
            KE L ALS PVI ARGGL L  R
Sbjct: 183 TKETLVALSEPVIFARGGLPLPGR 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357165607|ref|XP_003580437.1| PREDICTED: uncharacterized protein LOC100830278 [Brachypodium distachyon]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 161/195 (82%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+A RGVVV DK F NL TSELQ+ GAT AE LSG+P++V+GN++ G  +I+ A
Sbjct: 40  SYGLNWAIAARGVVVKDKVFYNLETSELQKGGATYAEHLSGIPLHVKGNVISGVPNITGA 99

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLKQVT HLSS+++++VQDGA+GSS++CDAKVRVISD+PSA++ LS++LWK P RA
Sbjct: 100 QFAKLLKQVTFHLSSVSSIYVQDGAIGSSADCDAKVRVISDNPSAIMLLSNVLWKIPDRA 159

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++    Q  NGF AADIERSSLILCGK F+D+  +K+A
Sbjct: 160 ISHDTCPLTIYVASSISTNVRNSLDSGTQYANGFAAADIERSSLILCGKAFADSTMLKDA 219

Query: 197 LAALSGPVIIARGGL 211
           L AL+ P++ AR GL
Sbjct: 220 LTALTVPILSARRGL 234

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
DICTYBASE|DDB_G0290857	519	DDB_G0290857 [Dictyostelium di	0.773	0.321	0.220	9e-05

DICTYBASE|DDB_G0290857 DDB_G0290857 [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
 Identities = 39/177 (22%), Positives = 77/177 (43%)

Query:    31 VNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLS 90
             V DK    L TS   Q+   +        +  + N    S  IS A Y  +L++V  ++S
Sbjct:   106 VTDKN-NVLITSSSSQEPKNVVNFFLDETISSKNNK-DSSKVISIADYKLVLEKVKQNIS 163

Query:    91 SIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTT 150
                N++V D AVGS  + ++K+R +++   + L +  +L  T    V+     LTVY   
Sbjct:   164 ESTNIYVHDSAVGSCRDVESKIRFVTNDAVSSLFVKHLLPTTTPTQVNEFKHQLTVYCVP 223

Query:   151 SIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVII 206
                 P   +++       + F   D +R   ++ G        ++  ++++S  +++
Sbjct:   224 EFKFPSSSSSLP-----SSSFNIIDTKRGIAVIVG--IQSTENIRNVISSISSNILM 273

GO:0017076 "purine nucleotide binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004612 "phosphoenolpyruvate carboxykinase (ATP) activity" evidence=IEA

GO:0004611 "phosphoenolpyruvate carboxykinase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
pfam01293	467	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxyk	4e-05
PRK09344	526	PRK09344, PRK09344, phosphoenolpyruvate carboxykin	0.003

>gnl|CDD|216417 pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVIS 116
           IS  ++  L ++V  +LS   ++FV D   G+  +   KVRV++
Sbjct: 68  ISPEKFDALKERVLDYLSG-KDLFVVDLFAGADPDYRLKVRVVT 110

Length = 467

>gnl|CDD|236471 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVL 123
           IS  ++  L ++V A+LS   ++FV DG  G+  E    VRVI++     L
Sbjct: 82  ISPEKFDALKQKVLAYLSG-KDLFVVDGFAGADPEYRLPVRVITELAWHAL 131

Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
PLN02597	555	phosphoenolpyruvate carboxykinase [ATP]	100.0
COG1866	529	PckA Phosphoenolpyruvate carboxykinase (ATP) [Ener	100.0
PTZ00311	561	phosphoenolpyruvate carboxykinase; Provisional	100.0
TIGR00224	532	pckA phosphoenolpyruvate carboxykinase (ATP). Invo	100.0
cd00484	508	PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK	100.0
PRK09344	526	phosphoenolpyruvate carboxykinase; Provisional	100.0
PF01293	466	PEPCK_ATP: Phosphoenolpyruvate carboxykinase The P	100.0
cd01919	515	PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a	100.0

>PLN02597 phosphoenolpyruvate carboxykinase [ATP]

Probab=100.00  E-value=3.3e-63  Score=471.97  Aligned_cols=187  Identities=18%  Similarity=0.238  Sum_probs=175.7

Q ss_pred             hhhhhCCCCcCcceeecCChHHHHHhh----cccccc-CCceEE--------------EEecCCC-----CC----CcCC
Q 027989           22 WALAGRGVVVNDKAFQNLTTSELQQKG----ATIAES-LSGLPV--------------YVRGNLL-----GG----SSDI   73 (216)
Q Consensus        22 ~~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~-~Gal~v--------------iV~~~~t-----~~----n~pi   73 (216)
                      ..|..+||+. ..+||||++++|+|++    ||.+++ +|||+|              ||+++.+     |+    |+||
T Consensus        23 ~~~~~~~~~~-~~v~~nl~~~~Lye~Al~~~eG~l~~~~GaL~v~TGk~TGRSP~DKfIV~d~~t~~~iwWg~g~vN~p~  101 (555)
T PLN02597         23 IDVSDSGLKF-THVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPKDKRVVRDETTEDELWWGKGSPNIEM  101 (555)
T ss_pred             cccccccCCc-ceEEeCCCHHHHHHHHHHhCCCeEEecCCCEEecCCCcCCCCcccceecCCCCcccceeccCCccCccC
Confidence            4567888887 5899999999999997    998665 999999              9999977     62    7999


Q ss_pred             CHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCC-CCCeEEEEcCCC
Q 027989           74 SKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSI  152 (216)
Q Consensus        74 s~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f-~pdfTI~~aP~f  152 (216)
                      ++++|++|++|+++||+++++|||+|+||||||+||++||||||.||||||+|||||||+.+|+++| +|||||||+|+|
T Consensus       102 ~~~~f~~l~~~~~~~l~~~~~lfv~D~~~Gad~~~r~~vRvite~aw~alF~~nmfirP~~~el~~f~~PdftIi~ap~f  181 (555)
T PLN02597        102 DEETFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQF  181 (555)
T ss_pred             CHHHHHHHHHHHHHHHccCCCEEEEeeeeccCccceeeEEEEeCHHHHHHHHHhcCCCCChHHhccCCCCCEEEEeCCCC
Confidence            9999999999999999986679999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          153 SPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       153 ~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      ++|| ..|||+|   ++||++||++|++|||||+  |+|||||||||+|||+||+||+|||||
T Consensus       182 ~a~~-~~~g~~S---e~~i~in~~~~~~lI~GT~--YaGE~KK~iFs~~~~ll~~rg~l~mHa  238 (555)
T PLN02597        182 PCNR-YTHYMTS---STSIDLNLKRKEMVILGTQ--YAGEMKKGLFSLMHYLMPMRGILSLHS  238 (555)
T ss_pred             CCCc-cccCCCC---CcEEEEEccCCeEEEEccc--hhhhhHHHHHHHHHHHHHHCCcEeecC
Confidence            9999 4559999   6999999999999999999  899999999999999999999999997

>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]

Probab=100.00  E-value=2.7e-63  Score=463.99  Aligned_cols=188  Identities=21%  Similarity=0.299  Sum_probs=178.6

Q ss_pred             hhhhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCH
Q 027989           21 NWALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISK   75 (216)
Q Consensus        21 n~~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~   75 (216)
                      ...++.+|+.+...+++||++++|+|++    ||.++++|||+|              ||+|+.+     |+  ||||++
T Consensus         7 ~~~~~~~~~~~~~~v~~n~s~~~L~e~~i~~~eg~lt~~Gal~~~TG~~TGRSPkDkfiV~~~~t~~~i~W~~~Nkpi~~   86 (529)
T COG1866           7 AQELEALGIRDVEDVVYNLSAAQLYEEAIRRGEGVLTATGALRVDTGIYTGRSPKDKFIVRDDSTRDTIWWGTRNKPISP   86 (529)
T ss_pred             hhhHHHhcccchHHHHhcCCHHHHHHHHhhcCCCccCCCCceEEecccccCCCCCCceEEecCcccccccccccCccCCH
Confidence            4567889998888999999999999994    999999999999              9999877     65  799999


Q ss_pred             HHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCC
Q 027989           76 AQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPG  155 (216)
Q Consensus        76 e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI~~aP~f~ad  155 (216)
                      |.|++|+.+|.+||++ ++|||+|++||||++||++||||||.|||+||+|||||||+.||+.+|+|||||+++|+|+||
T Consensus        87 e~f~~L~~~~~~yl~~-k~lfv~d~~~Ga~~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~~~dftvin~p~f~~~  165 (529)
T COG1866          87 ETFDRLKGDVTDYLSG-KDLFVVDGFAGADPDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTFKPDFTVINAPSFKAD  165 (529)
T ss_pred             HHHHHHHHHHHHHhcc-CcEEEEEeeecCCccceeeeEeehhhHHHHHHHHhcccccchhhhccCCCCeEEEeCCcCCCC
Confidence            9999999999999999 579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          156 VVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       156 p~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      |. .||+||   |+||++||++|++|||||+  |+|||||||||||||+||++||||||.
T Consensus       166 ~~-~~g~~S---e~~i~~n~~~~~~lIggT~--YaGEMKK~~fs~mnylLP~~~i~~MHc  219 (529)
T COG1866         166 PK-RDGLRS---ETFVAFNFTERIVLIGGTW--YAGEMKKGIFSVMNYLLPLKGILSMHC  219 (529)
T ss_pred             hh-hccccc---ccEEEEecccceeeeeccc--hhhhhhhhHHHHhhcccccccccccee
Confidence            84 559999   6999999999999999999  899999999999999999999999995

>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional

Probab=100.00  E-value=1.2e-61  Score=463.05  Aligned_cols=190  Identities=21%  Similarity=0.262  Sum_probs=178.2

Q ss_pred             hhhhhhhhCCCCcCcceeecCChHHHHHhh-----ccccccCCceEE--------------EEecCCC-----CC--CcC
Q 027989           19 GLNWALAGRGVVVNDKAFQNLTTSELQQKG-----ATIAESLSGLPV--------------YVRGNLL-----GG--SSD   72 (216)
Q Consensus        19 ~ln~~L~~~gi~~~~~v~~Nls~~~L~e~~-----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~p   72 (216)
                      .+...|+.+||.+ ..+||||++++|+|++     ||.++++|+|+|              ||+++.+     ||  |+|
T Consensus        29 ~~~~~l~~~g~~~-~~i~~Nl~~~~L~E~al~~~~~g~~t~~GaL~v~TG~~TGRSpkDKfIV~~~~~~d~i~Wg~vN~p  107 (561)
T PTZ00311         29 QLEEELHKLGLHN-TTIHRNLTVPELYEHALKYEKNTSITSTGALCVYSGAKTGRSPKDKRIVKEDSSEDDIWWGKVNIP  107 (561)
T ss_pred             hhhccHhhcCCCC-CeEEeCCCHHHHHHHHHhhcCCcEEecCCceEEecCCccCCCCCceEEeCCCCcccccccCccCcc
Confidence            3447778889987 4899999999999996     889999999999              9988766     76  899


Q ss_pred             CCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCcccc----CCCCCCeEEEE
Q 027989           73 ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAV----SHDSCPLTVYV  148 (216)
Q Consensus        73 is~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el----~~f~pdfTI~~  148 (216)
                      |++++|+.|+++|.+||+.++++||+|+||||||+||++||||||.||||||++||||||+.+|+    +.|+||||||+
T Consensus       108 ~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~~~f~PdftIi~  187 (561)
T PTZ00311        108 LSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFGEDFVPDFTIYN  187 (561)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcccceeEEEEecHHHHHHHHHHCCCCCChHHhhccccCCCCCEEEEE
Confidence            99999999999999999765789999999999999999999999999999999999999999999    89999999999


Q ss_pred             cCCCCCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          149 TTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       149 aP~f~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      +|+|++||. .|||+|   ++||+|||++|++|||||+  |+|||||||||+|||+||+||+|||||
T Consensus       188 ~P~f~a~~~-~~G~~s---e~~i~in~~~~~~lI~GT~--YaGEiKKgiFt~~~~ll~~rg~l~lHa  248 (561)
T PTZ00311        188 AGEFKANRL-IEGVTS---ETSVALNFKRREMVILGTQ--YAGEMKKGILTVMMYLMPKQGVLPLHS  248 (561)
T ss_pred             CCCCCCCcc-cCCCCc---ccEEEEEccCCeEEEEccc--chhhhHHHHHHHHHHHHHHCCceeeee
Confidence            999999995 459999   6999999999999999999  899999999999999999999999997

>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP)

Probab=100.00  E-value=2.3e-61  Score=458.58  Aligned_cols=190  Identities=17%  Similarity=0.228  Sum_probs=178.7

Q ss_pred             hhhhhhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC-----CC-
Q 027989           19 GLNWALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL-----GG-   69 (216)
Q Consensus        19 ~ln~~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t-----~~-   69 (216)
                      .+-..|+.+||.+...+||||++++|+|++         ||.++++|||+|              ||+++.+     || 
T Consensus         5 ~~~~~l~~~g~~~~~~v~~Nl~~~~L~e~a~~~~~~~~~eg~~t~~Gal~v~TG~~TGRSpkDK~IV~~~~t~~~i~Wg~   84 (532)
T TIGR00224         5 LTPQELEALGISDVHDIVYNPSYAQLYEEELKPSLTGYEKGVLTSTGAVAVDTGIFTGRSPKDKYIVEDETTKDTIWWGP   84 (532)
T ss_pred             hhhhhHHhcCCCCCceEEeCCCHHHHHHHHHhhccccCCCceeccCCceEEecCCeeCCCcCceEEeCCCCcccccccCc
Confidence            445667788898877899999999999995         488999999999              9988877     76 


Q ss_pred             -CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEEEE
Q 027989           70 -SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYV  148 (216)
Q Consensus        70 -n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI~~  148 (216)
                       |+||++++|+.|+++|.+||+. +++||+|+||||||+||++||||||+||||||+|||||||+.+|++.|+||||||+
T Consensus        85 vN~p~~~~~f~~L~~~v~~~l~~-~~lyv~D~~~GaDp~~rl~vRvite~AwhalF~~nmfirP~~eel~~fePdftI~~  163 (532)
T TIGR00224        85 VNKPLSEETWQHLKGLVTRQLSR-KRLFVVDAFCGADPKYRLSVRVVTEVAWQAHFVKNMFIRPTEEELAGFEPDFTVMN  163 (532)
T ss_pred             CCcCCCHHHHHHHHHHHHHHhcC-CCEEEEeeeeccCcccceeEEEEEcHHHHHHHHHhhCCCCChHHhccCCCCEEEEe
Confidence             7999999999999999999996 68999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          149 TTSIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       149 aP~f~-adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      +|+|+ +|| .++|++|   ++||++||++|++|||||+  |+|||||||||+|||+||+||+|||||
T Consensus       164 ~p~f~~ad~-~~~g~~S---~~~i~in~~~~~~lI~GT~--YaGEiKKgiFs~~~~ll~~rg~l~lH~  225 (532)
T TIGR00224       164 GAKFTNPNW-KEQGLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGILSMHC  225 (532)
T ss_pred             CCCCCCCCc-ccCCCCc---CcEEEEecccCeEEEECcc--hhhhhHHHHHHHHHHHHHhCCeEeecC
Confidence            99999 998 5569999   6999999999999999999  899999999999999999999999997

Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421

>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=100.00  E-value=3.7e-60  Score=449.86  Aligned_cols=175  Identities=19%  Similarity=0.321  Sum_probs=168.2

Q ss_pred             ceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHHHHHHHHHHHHH
Q 027989           34 KAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQYAKLLKQVTAH   88 (216)
Q Consensus        34 ~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~F~~L~~~v~~y   88 (216)
                      ++|||||+++|+|+|    ||+++++|+|+|              ||+++.+     ||  |+||++++|++|++++.+|
T Consensus         2 ~v~~Nls~~eL~E~A~~~~eg~~t~~GaL~v~TG~~TGRSPkDkfIV~~~~t~~~i~wg~vn~~~~~~~f~~L~~~~~~y   81 (508)
T cd00484           2 HIHHNLSPAELYEEALKRGEGVLTSTGALAVDTGKKTGRSPKDKFIVDEPSSEDDIWWGKVNQPISEETFEILRERAVDY   81 (508)
T ss_pred             ccccCCCHHHHHHHHHhCCCCEEecCCCeEeccCCccCCCCCceeEeCCCCccccccccccCcCCCHHHHHHHHHHHHHH
Confidence            579999999999997    999999999999              9988866     76  8999999999999999999


Q ss_pred             HcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCCccCCcCCCCCC
Q 027989           89 LSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDN  168 (216)
Q Consensus        89 L~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI~~aP~f~adp~~~~Gt~Se~~e  168 (216)
                      |++ ++|||+|+||||||+||++||||||.||||||++||||||+.+|+++|.||||||++|+|++|| ..|||+|   +
T Consensus        82 l~~-~~lyv~D~~vGadp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f~pdftI~~~P~f~~~~-~~~G~~s---~  156 (508)
T cd00484          82 LNT-KKLFVFDGFAGADPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFGPDFTIYNAPKFKANP-ETDGMNS---E  156 (508)
T ss_pred             hcC-CCEEEEeeeeecCcccceeeEEEECHHHHHHHHHhCCCCCChHHhccCCcCEEEEECCCCcCCc-cccCCCc---c
Confidence            999 5799999999999999999999999999999999999999999999999999999999999999 5559999   6


Q ss_pred             eEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          169 GFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       169 ~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      +||++||++|++|||||+  |+|||||||||+|||+||+||+|||||
T Consensus       157 ~~iiin~~~~~~lI~GT~--YaGEiKKgif~~~~~ll~~~g~l~lH~  201 (508)
T cd00484         157 TFVIINFAEREMVIGGTE--YAGEMKKGIFSVMNYLLPKKGVLSMHC  201 (508)
T ss_pred             cEEEEEccCCeEEEECcc--chhhhHHHHHHHHHHHHHhCCcEeecc
Confidence            999999999999999999  899999999999999999999999997

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.

>PRK09344 phosphoenolpyruvate carboxykinase; Provisional

Probab=100.00  E-value=6.9e-57  Score=429.76  Aligned_cols=186  Identities=21%  Similarity=0.295  Sum_probs=178.0

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHH
Q 027989           23 ALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQ   77 (216)
Q Consensus        23 ~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~   77 (216)
                      .|+.+||.+..++||||++++|+|++    ||.++++|+|+|              ||+|+.+     |+  |+||++++
T Consensus         7 ~l~~~g~~~~~~i~~n~~~~~L~e~a~~~~~g~~t~~Gal~~~tG~~tGRSp~dk~iV~~~~~~~~i~wg~~n~~~~~~~   86 (526)
T PRK09344          7 DLEAYGITNLSNVHYNLSYAELYEEALRRGEGVLTDTGALAVDTGKFTGRSPKDKFIVRDPSTEDTIWWGDDNKPISPEK   86 (526)
T ss_pred             chhhcCCCCcceeEeCCCHHHHHHHHHHcCCCeeccCCceEEecCCccCCCcCceeeecCccccccccccccCCCCCHHH
Confidence            37889999888999999999999997    899999999999              9998877     76  89999999


Q ss_pred             HHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCC
Q 027989           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVV  157 (216)
Q Consensus        78 F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI~~aP~f~adp~  157 (216)
                      |++|++++.+||+++ ++||+|+|||+||+||++||||||+|||+||++|||+||+.+|++.|+||||||++|+|+++| 
T Consensus        87 f~~l~~~~~~~l~~~-~lyv~d~~vG~d~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~~~~Pd~~ii~~p~~~~~~-  164 (526)
T PRK09344         87 FDALKQKVLAYLSGK-DLFVVDGFAGADPEYRLPVRVITELAWHALFVRNLFIRPSEEELASFEPDFTIINAPKFKADP-  164 (526)
T ss_pred             HHHHHHHHHHHhcCC-cEEEEeeeecCChhHeeeEEEEecHHHHHHHHhhcCCCCChhHhccCCCCEEEEEcCCCCCCc-
Confidence            999999999999995 899999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             ccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          158 NAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       158 ~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      ..||++|   ++||++||++|.++||||+  |+|||||++||+|||+||.||+||||+
T Consensus       165 ~~~g~~s---~~~i~~~~~~~~~~I~Gt~--Y~GE~KK~~lt~~~~~l~~rg~l~lH~  217 (526)
T PRK09344        165 ERDGTNS---ETFIAINFTERIVLIGGTD--YAGEMKKSIFSVMNYLLPLKGVLPMHC  217 (526)
T ss_pred             cccCCCC---CceEEEecccCeEEEEcch--hHHHHHHHHHHHHHHHHHHCCcEeeeC
Confidence            6669999   6999999999999999999  899999999999999999999999997

>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate

Probab=100.00  E-value=3.5e-57  Score=427.82  Aligned_cols=176  Identities=24%  Similarity=0.350  Sum_probs=153.1

Q ss_pred             cceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHHHHHHHHHHHH
Q 027989           33 DKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQYAKLLKQVTA   87 (216)
Q Consensus        33 ~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~F~~L~~~v~~   87 (216)
                      .++|||||+++|+|+|    ||.++++|||+|              ||+++.+     |+  |+||++++|++|+++|.+
T Consensus         2 ~~v~~Nls~~~L~e~a~~~~eg~lt~~Gal~v~tG~~TGRSp~dkfIV~~~~~~~~v~Wg~~n~~i~~e~f~~L~~~v~~   81 (466)
T PF01293_consen    2 ANVYRNLSPPELYEEAIKRGEGVLTKTGALVVNTGKFTGRSPKDKFIVDEPGTEDKVWWGSVNQPISEEQFEKLLERVVD   81 (466)
T ss_dssp             SEEEES--HHHHHHHHCHTTTEEE-TTSSEEE--TT-SSB-GGGEEEE-STTTTTTS-BTTSBEEE-HHHHHHHHHHHHH
T ss_pred             CeeEeCCCHHHHHHHHHhcCCCEEccCCCEEEeCCCccCCCCCceEEecCCccccccccccCCcccCHHHHHHHHHHHHH
Confidence            4789999999999997    999999999999              9998877     76  799999999999999999


Q ss_pred             HHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCCccCCcCCCCC
Q 027989           88 HLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGD  167 (216)
Q Consensus        88 yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI~~aP~f~adp~~~~Gt~Se~~  167 (216)
                      ||+++ +|||+|+||||||+||++||||||.||||||++|||+||+.+|+.+|+|||||+++|+|++||+.+ |++|   
T Consensus        82 yL~~k-~lyv~D~~vG~d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f~pd~tI~~~p~f~~~p~~~-g~~s---  156 (466)
T PF01293_consen   82 YLSTK-ELYVQDGYVGADPDYRIKVRVITERAWHALFARNLFIRPPPEELQNFEPDFTIINAPDFKADPEID-GTNS---  156 (466)
T ss_dssp             HHTTS-EEEEEEEEESSSTTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT-S-SEEEEEETTS--TTCHC-T-SS---
T ss_pred             Hhccc-ceEEEEEEEecCHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhcccCCCEEEEeCCccccCCCcC-CCCC---
Confidence            99995 999999999999999999999999999999999999999999999999999999999999999666 9999   


Q ss_pred             CeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          168 NGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       168 e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      ++||++|+++|++||+||+  |+|||||++||+|||+||.+|+||||+
T Consensus       157 ~~~i~~d~~~~~~vI~Gt~--Y~GEiKK~ift~~n~ll~~~g~l~mH~  202 (466)
T PF01293_consen  157 DTFIIFDFERNVAVILGTR--YAGEIKKGIFTVMNYLLPRNGVLPMHC  202 (466)
T ss_dssp             S-EEEEETTTTEEEEES-----THHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred             CcEEEEccccCeEEEECCc--ccccchHHHHHHHHHhhHhcCeEEEEe
Confidence            6999999999999999999  899999999999999999999999997

The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....

>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=100.00  E-value=2e-48  Score=371.70  Aligned_cols=176  Identities=16%  Similarity=0.137  Sum_probs=165.5

Q ss_pred             ceeecCChHHHHHhh-----ccccccCCceEE--------------EEecCCC----C-------CCcCCCHHHHHHHHH
Q 027989           34 KAFQNLTTSELQQKG-----ATIAESLSGLPV--------------YVRGNLL----G-------GSSDISKAQYAKLLK   83 (216)
Q Consensus        34 ~v~~Nls~~~L~e~~-----eg~l~~~Gal~v--------------iV~~~~t----~-------~n~pis~e~F~~L~~   83 (216)
                      .+|||+++++|+|++     ||+++++|+|+|              ||+++.+    |       -|+++++++|++|++
T Consensus         2 ~v~~n~~~~~L~e~~~~~~g~~~~~~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~~w~~~N~~~~~~~~~~~~~   81 (515)
T cd01919           2 HIHINDENGRLLQQMLEEYGILRLTKNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGLSQLNRWLSEEDFEKAFN   81 (515)
T ss_pred             ceEECCCHHHHHHHHHHhcCCEEECCCceEEECCCCccccCCCceEEeCCCccccCccccccccccCCCCCHHHHHHHHH
Confidence            589999999999994     678999999999              8987766    2       389999999999999


Q ss_pred             HHHHHH-cCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCC
Q 027989           84 QVTAHL-SSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVG  161 (216)
Q Consensus        84 ~v~~yL-~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f-~pdfTI~~aP~f~adp~~~~G  161 (216)
                      ++.+|+ ++ +++||+|+++|+||.||+++|+|||+|||+||+|||||||+.+|++.| +|+|||||+|+|++||...+|
T Consensus        82 ~~~~~~m~g-r~myV~d~~~G~~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~p~~~ii~~~g~~~~~~~w~g  160 (515)
T cd01919          82 ARFPGLMKG-RTLFVVDFFMGPGSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGDPDVKCLNSVGCPLPLQKWPG  160 (515)
T ss_pred             HHHHHHhcC-CCEEEEeceECCCCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCCCCEEEEeCCCCcCCccCCCC
Confidence            999999 77 689999999999999999999999999999999999999998999999 699999999999999966469


Q ss_pred             cCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          162 LRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       162 t~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      ++|   ++||++|+++|+|+|+||+  |+|||||++|++|||++|++|+||||+
T Consensus       161 ~~s---~~~I~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~~~~~l~~~~g~L~~H~  209 (515)
T cd01919         161 LPS---LTLVAHNPDRREQIIFGTG--YGGEMKKGFLRMMSRLAPEEGWLAMHM  209 (515)
T ss_pred             CCC---CcEEEEEcccCEEEEecCc--cccchHHHHHHHHHHHHHhcCceeeec
Confidence            999   6999999999999999999  899999999999999999999999997

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	1e-04
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	4e-04
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	4e-04
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	6e-04

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1 Length = 524

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVL 123
           +S+  +A++ K     L +  ++FV D   G       KVRV +  P   L
Sbjct: 68  LSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHAL 118

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A* Length = 529

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSP 119
            +   +  L ++V  +LS   +++VQD   G+       VRV+++SP
Sbjct: 78  FAPEAFEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESP 123

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A Length = 532

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSP 119
           +++  +A+L       LS+   ++V D   G++     K+R + +  
Sbjct: 90  VTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVA 135

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A* Length = 540

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSP 119
           +S   +  L   VT  LS    +FV D   G++ +    VR I++  
Sbjct: 97  LSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVA 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	100.0
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	100.0
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	100.0
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	100.0

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=100.00  E-value=1.7e-52  Score=399.96  Aligned_cols=190  Identities=13%  Similarity=0.152  Sum_probs=178.5

Q ss_pred             hhhhhhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC----C---
Q 027989           19 GLNWALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL----G---   68 (216)
Q Consensus        19 ~ln~~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t----~---   68 (216)
                      .|.+.|+.+||++..++|||+++++|+|++         ||.++++|++++              ||+++.+    |   
T Consensus         2 ~~~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~i~w~~~   81 (532)
T 1ytm_A            2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKEIWWTSD   81 (532)
T ss_dssp             CHHHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCEEECTTSSEEECCTTCCSBCGGGEEEECSGGGTTSCCCCS
T ss_pred             ccccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccceecCCCCEEEcCCCcccCCCCceEEeCCCCccccccccc
Confidence            466889999999988999999999999985         688999999999              8877655    6   


Q ss_pred             --C--CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCe
Q 027989           69 --G--SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL  144 (216)
Q Consensus        69 --~--n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdf  144 (216)
                        +  |+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||+.+|+++|+|||
T Consensus        82 ~~~~~n~~~~~e~f~~l~~~~~~~l~~-k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f~pd~  160 (532)
T 1ytm_A           82 EFKNDNKPVTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPDF  160 (532)
T ss_dssp             SSCCSCEEECHHHHHHHHHHHHHHHSS-SEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTCCCSE
T ss_pred             ccCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccCCCCE
Confidence              4  7899999999999999999999 5899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCC-CCCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          145 TVYVTTS-ISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       145 TI~~aP~-f~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      |||++|+ |+++|..+ |++|   +++|++|+++++++||||+  |+|||||++||+|||++|++|+||||+
T Consensus       161 ~i~~~p~~f~~~~~~~-G~~s---~~~v~~n~~~~~~~I~gt~--Y~GemKK~~ftl~n~~~~~~G~L~~H~  226 (532)
T 1ytm_A          161 VVLNASKAKVENFKEL-GLNS---ETAVVFNLAEKMQIILNTW--YGGEMKKGMFSMMNFYLPLQGIAAMHC  226 (532)
T ss_dssp             EEEEETTCCCTTTTTT-TCSS---SCEEEEETTTTEEEEESCC--CTTHHHHHHHHHHHHHTGGGTCEEEEE
T ss_pred             EEEECCccccCCcccC-CCCC---ceEEEEECCCCEEEEeCCc--cCchhhHhHHHHHHHHHHHCCcEeecC
Confidence            9999999 99998554 9999   6999999999999999999  799999999999999999999999995

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=100.00  E-value=6e-51  Score=389.25  Aligned_cols=184  Identities=16%  Similarity=0.207  Sum_probs=174.0

Q ss_pred             hhhhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC-----C-C--
Q 027989           21 NWALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL-----G-G--   69 (216)
Q Consensus        21 n~~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t-----~-~--   69 (216)
                      ...|+.+||++..++|||+++++|+|++         ||.++++|++++              ||+++.+     | +  
T Consensus         9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~~   88 (540)
T 2olr_A            9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKG   88 (540)
T ss_dssp             HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSS
T ss_pred             ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccceecCCCCEEEcCCCcccCCCCceEEeCCCCCcccccccccc
Confidence            4578999999988999999999999995         689999999999              8888766     4 3  


Q ss_pred             -----CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCe
Q 027989           70 -----SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL  144 (216)
Q Consensus        70 -----n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdf  144 (216)
                           |+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||+.+|+++|+|||
T Consensus        89 ~~~~~N~~~~~e~f~~l~~~~~~~l~~-k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~~pd~  167 (540)
T 2olr_A           89 KGKNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDF  167 (540)
T ss_dssp             SSCCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSE
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHcC-CCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCCCCCE
Confidence                 6899999999999999999999 5899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEc-----CCCCCCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          145 TVYVT-----TSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       145 TI~~a-----P~f~adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      |||++     |+|+++     |++|   +++|++|+++++++||||+  |+|||||++||+|||+||++|+||||+
T Consensus       168 ~i~~~~~~~~p~f~~~-----G~~s---~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~l~~~G~L~mH~  233 (540)
T 2olr_A          168 IVMNGAKCTNPQWKEQ-----GLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGIASMHC  233 (540)
T ss_dssp             EEEEETTCCCTTTTTT-----TCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGTCEEECE
T ss_pred             EEEEeccCCCCCcccC-----CccC---ccEEEEEccCCeEEEeCCc--CchHhhhhHHHHhHHHHHHCCcEeecc
Confidence            99999     999987     9999   6999999999999999999  899999999999999999999999995

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=100.00  E-value=3.3e-51  Score=390.52  Aligned_cols=177  Identities=19%  Similarity=0.229  Sum_probs=165.8

Q ss_pred             cceeecCChHHHHHhh----cc-ccccCCceEE--------------EEecCCC-----CC--CcCCCHHHHHHHHHHHH
Q 027989           33 DKAFQNLTTSELQQKG----AT-IAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQYAKLLKQVT   86 (216)
Q Consensus        33 ~~v~~Nls~~~L~e~~----eg-~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~F~~L~~~v~   86 (216)
                      .++|||+++++|+|++    || .++++|+|++              ||+++.+     |+  |+|+++++|+.|+++|.
T Consensus         2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~   81 (524)
T 1ii2_A            2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK   81 (524)
T ss_dssp             CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred             CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence            3689999999999995    68 8999999999              8877754     66  79999999999999999


Q ss_pred             HHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 027989           87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ  165 (216)
Q Consensus        87 ~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f-~pdfTI~~aP~f~adp~~~~Gt~Se  165 (216)
                      +||++++++||+|+++|+||+||++|||||+.|||+||++|||+||+.+|+.+| +||||||++|+|+++|.. +||+| 
T Consensus        82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~~~-~G~~s-  159 (524)
T 1ii2_A           82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSI-PGLTS-  159 (524)
T ss_dssp             HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTS-TTCCS-
T ss_pred             HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCccc-CCcCc-
Confidence            999995349999999999999999999999999999999999999998999999 999999999999999855 59999 


Q ss_pred             CCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       166 ~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                        ++||++|+++++++|+||+  |+|||||++||+|||++|++|+||||+
T Consensus       160 --~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~~~~~g~L~~H~  205 (524)
T 1ii2_A          160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMNHLCMHA  205 (524)
T ss_dssp             --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTTCEEESE
T ss_pred             --ccEEEEECCCCeEEEECCc--chHHHHHHHHHHHHHHHHHCCcEeecc
Confidence              6999999999999999999  899999999999999999999999995

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=100.00  E-value=1.4e-47  Score=365.77  Aligned_cols=186  Identities=20%  Similarity=0.258  Sum_probs=170.2

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHH
Q 027989           23 ALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQ   77 (216)
Q Consensus        23 ~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~   77 (216)
                      .|+.+||.+..++|||++.++|+|++    +|.++++|++++              ||+++.+     |+  |++++++.
T Consensus         3 ~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~e~   82 (529)
T 1j3b_A            3 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA   82 (529)
T ss_dssp             CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred             chhhccCCCCCeEEECCChHHHHHHHHHcCCCEECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCHHH
Confidence            47889999888999999999999985    889999999988              8887755     55  78999999


Q ss_pred             HHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 027989           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS  153 (216)
Q Consensus        78 F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~----~~el~~f~pdfTI~~aP~f~  153 (216)
                      |+.|++++.+||++ +++||+|+++|+|+.+++++|+||++|||+||++||||||.    .+|+++|+|||+||++|+|+
T Consensus        83 f~~l~~~~~~~m~g-r~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~pd~~i~~~p~f~  161 (529)
T 1j3b_A           83 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ  161 (529)
T ss_dssp             HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred             HHHHHHHHHHHhcC-CcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCCCCEEEEeCCCcc
Confidence            99999999999999 58999999999999999999999999999999999999998    78999999999999999999


Q ss_pred             CCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCCcccccC
Q 027989          154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCA  215 (216)
Q Consensus       154 adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~gvlpm~~  215 (216)
                      ++| ..+||+|   +++|++|+++|+|+|+||+  |+|||||++|++|||++|++|+||||+
T Consensus       162 ~~~-~~~G~~s---~~~i~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~i~~~~~~~~G~L~~H~  217 (529)
T 1j3b_A          162 AVP-ERDGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRGVFPMHA  217 (529)
T ss_dssp             CCH-HHHCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGTCEEEEC
T ss_pred             cCc-ccCCCCC---ceEEEEECccCEEEEeCCc--cCcchHHHHHHHHHHHHHHCCeEeccc
Confidence            997 4459999   6999999999999999999  899999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1j3ba2	210	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0
d2olra2	222	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0
d1ii2a2	199	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0

>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=9.8e-76  Score=502.45  Aligned_cols=180  Identities=20%  Similarity=0.262  Sum_probs=167.4

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHhh----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHH
Q 027989           23 ALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQ   77 (216)
Q Consensus        23 ~L~~~gi~~~~~v~~Nls~~~L~e~~----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~   77 (216)
                      .|+++||++.+++||||++++|+|++    ||+++++|||+|              ||+|+.|     ||  |+||++|+
T Consensus         2 ~L~~~Gi~~~~~v~~Nl~~~~L~e~ai~~~eG~l~~~GaL~v~TG~~TGRSPkDKfiV~d~~t~d~IwWg~vN~~is~e~   81 (210)
T d1j3ba2           2 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA   81 (210)
T ss_dssp             CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred             chHHcCCCCCCeEEeCCCHHHHHHHHHHcCCeEEcCCCCEEEecCCccCcCCCccEEEeecccccccccccccccccHHH
Confidence            47899999988999999999999997    999999999999              9999976     65  89999999


Q ss_pred             HHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 027989           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS  153 (216)
Q Consensus        78 F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~----~~el~~f~pdfTI~~aP~f~  153 (216)
                      |+.|+++|++||++ +++||+|+||||||+||++||||||+||||||+|||||||+    ++|+.+|+|||||||||+|+
T Consensus        82 F~~L~~~~~~yl~~-k~lyv~D~~~Gad~~~r~~vRvite~AwhalF~~nMFirP~~~~~~~el~~f~Pd~tIi~ap~f~  160 (210)
T d1j3ba2          82 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ  160 (210)
T ss_dssp             HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred             HHHHHHHHHHHHcC-CCcEEEEEEEecCcccccceEEeehhhhHHHHhhheeccccccCchhhHhccCCCcEEEecCccc
Confidence            99999999999999 58999999999999999999999999999999999999996    48999999999999999999


Q ss_pred             CCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCC
Q 027989          154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (216)
Q Consensus       154 adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~g  209 (216)
                      |||+. |||||   ++||+|||++|+||||||+  |||||||||||||||+||+||
T Consensus       161 ~~p~~-~g~~S---e~~v~inf~~k~ilI~GT~--YaGEiKKsiFsvmNylLP~~G  210 (210)
T d1j3ba2         161 AVPER-DGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRG  210 (210)
T ss_dssp             CCHHH-HCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGT
T ss_pred             CCccc-cCCCC---CCEEEEEcccCEEEEEcCc--ccchhHHHHHHHHHhhcCCCC
Confidence            99955 59999   6999999999999999999  899999999999999999997

>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-73  Score=490.41  Aligned_cols=180  Identities=17%  Similarity=0.244  Sum_probs=171.4

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHhh---------ccccccCCceEE--------------EEecCCC-----CC-----
Q 027989           23 ALAGRGVVVNDKAFQNLTTSELQQKG---------ATIAESLSGLPV--------------YVRGNLL-----GG-----   69 (216)
Q Consensus        23 ~L~~~gi~~~~~v~~Nls~~~L~e~~---------eg~l~~~Gal~v--------------iV~~~~t-----~~-----   69 (216)
                      .|+.+||++..++||||++++|+|++         ||+++++|||+|              ||+|+.|     ||     
T Consensus         6 ~L~~~Gi~~~~~i~~Nl~~~~L~e~al~~~~~~~~eG~ls~~GaL~v~TG~~TGRSPkDKfIV~d~~t~d~IwWG~v~~~   85 (222)
T d2olra2           6 ELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKG   85 (222)
T ss_dssp             HHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSSSS
T ss_pred             HHHHhCCCCCCeEEeCCCHHHHHHHHHHhcccccCceEEcCCCcEEEeCCCCCCCCCCceEEEEecccccceeecccccc
Confidence            68999999989999999999999985         899999999999              9999987     64     


Q ss_pred             ---CcCCCHHHHHHHHHHHHHHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCCCCCeEE
Q 027989           70 ---SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTV  146 (216)
Q Consensus        70 ---n~pis~e~F~~L~~~v~~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f~pdfTI  146 (216)
                         |+||++++|+.|+++|.+||++ +++||+|+||||||+||++||||||+||||||+|||||||+.+|+++|.|||||
T Consensus        86 ~~~N~p~s~e~F~~L~~~~~~yl~~-k~lyV~D~~aGad~~~rl~VRvite~AwhaLF~~nMfirp~~~el~~f~pd~ti  164 (222)
T d2olra2          86 KNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIV  164 (222)
T ss_dssp             CCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSEEE
T ss_pred             ccCCccCCHHHHHHHHHHHHHHhcc-CCceEEEEEEecCccceeeeeeehhhhHHHHHHHHHhCCCcchhhccCCchheE
Confidence               8999999999999999999999 589999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCC-CCCCccCCcCCCCCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCC
Q 027989          147 YVTTSIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (216)
Q Consensus       147 ~~aP~f~-adp~~~~Gt~Se~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~g  209 (216)
                      |++|+|. +|| ..|||||   ++||+|||++|+||||||+  |||||||||||||||+||+||
T Consensus       165 i~~~~~~~~~~-~~~g~~S---e~~v~inf~~k~ilI~GT~--YaGEiKKsiFsvmNylLP~~G  222 (222)
T d2olra2         165 MNGAKCTNPQW-KEQGLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKG  222 (222)
T ss_dssp             EEETTCCCTTT-TTTTCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGT
T ss_pred             ecccccccCcc-ccCCCCc---CcEEEEEcccCEEEEEcCc--ccchhhHHHHHHHHhhcCCCC
Confidence            9999985 677 5559999   6999999999999999999  899999999999999999997

>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1.7e-71  Score=472.81  Aligned_cols=171  Identities=18%  Similarity=0.230  Sum_probs=162.0

Q ss_pred             cceeecCChHHHHHhh-----ccccccCCceEE--------------EEecCCC-----CC--CcCCCHHHHHHHHHHHH
Q 027989           33 DKAFQNLTTSELQQKG-----ATIAESLSGLPV--------------YVRGNLL-----GG--SSDISKAQYAKLLKQVT   86 (216)
Q Consensus        33 ~~v~~Nls~~~L~e~~-----eg~l~~~Gal~v--------------iV~~~~t-----~~--n~pis~e~F~~L~~~v~   86 (216)
                      .++||||++++|+|++     ||+++++|||+|              ||+|+.|     ||  |+||++++|+.|+++|.
T Consensus         2 ~~v~~NL~~~~L~e~ai~~~~eg~ls~~GaL~v~TG~~TGRSPkDKfIV~d~~t~~~i~Wg~~N~~~~~e~F~~L~~~v~   81 (199)
T d1ii2a2           2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK   81 (199)
T ss_dssp             CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred             CeeEcCCCHHHHHHHHHhhCCCcEEcCCCCEEEecCCccCCCCCceEEEccCCccccceeecCCccCCHHHHHHHHHHHH
Confidence            4799999999999985     899999999999              9988866     75  79999999999999999


Q ss_pred             HHHcCCCceEeEeeeecCCcCCcceEEEEcchhhhHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 027989           87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ  165 (216)
Q Consensus        87 ~yL~~~~~lyV~D~~aGad~~~rl~VRvIte~AwhaLF~~nmfirp~~~el~~f-~pdfTI~~aP~f~adp~~~~Gt~Se  165 (216)
                      +||+++++|||+|++|||||+||++||||||+||||||+|||||||+.+|+++| +|||||+|||+|++||+. ||||| 
T Consensus        82 ~yl~~~~~lyv~D~~~Gad~~~~~~VRvite~AWh~lF~~nMFirP~~~e~~~~~~pd~tI~~ap~~~~dp~~-~g~~S-  159 (199)
T d1ii2a2          82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADPSI-PGLTS-  159 (199)
T ss_dssp             HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCTTS-TTCCS-
T ss_pred             HHHhhccceEEEeEEecCCcccceeEEEeehHHHHHHHhhheecccccccccccCCCceEEecccccccCccc-cCCCC-
Confidence            999986679999999999999999999999999999999999999999999999 799999999999999855 59999 


Q ss_pred             CCCeEEEEecccCeEEEecCCCCccchhhhHHHHhhhhccccCC
Q 027989          166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (216)
Q Consensus       166 ~~e~fiiinf~~r~ilIgGT~Y~YaGEiKKsiFsvmNylLP~~g  209 (216)
                        ++||+|||++|+||||||+  |||||||||||||||+||+|+
T Consensus       160 --~~~i~in~~~k~ilI~GT~--YaGEiKKsiFsvmNy~LP~~n  199 (199)
T d1ii2a2         160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMN  199 (199)
T ss_dssp             --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTT
T ss_pred             --CcEEEEEcccCEEEEEcCc--cchhhhhhHHhhhhhcccCCC
Confidence              6999999999999999999  899999999999999999885