Citrus Sinensis ID: 027999

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Secondary Structure (PSIPRED)
ccccHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mdvdprqyehiaindnDIHNIVLSYLVHNCYKETVDSFisctgmkqpancleDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAqtkltpfgkVQKYVEKLEDFMALLAyeepekspmfHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Flexible Loop (DISEMBL)
MDVDPRQYEHiaindndihNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEfaqtkltpfgkVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Low Complexity Region (SEG)
MDVDPRQYEhiaindndihniVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered region (IsUnstruct)
*******YEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLS*******************
Disordered Region (DISOPRED)
*D*DPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQ***KDVHPPFSLKDFMK*
Disordered Region (DISEMBL)
MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered Region (DISPRO)
*DVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
A7SWD3	225	Glucose-induced degradati	N/A	no	0.711	0.68	0.354	1e-19
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.767	0.723	0.341	1e-19
Q32L52	228	Glucose-induced degradati	yes	no	0.734	0.692	0.35	3e-19
Q9D7M1	228	Glucose-induced degradati	yes	no	0.734	0.692	0.35	4e-19
Q9NWU2	228	Glucose-induced degradati	yes	no	0.734	0.692	0.35	1e-18
Q6PC55	228	Glucose-induced degradati	yes	no	0.767	0.723	0.329	2e-18
Q54X16	228	Glucose-induced degradati	no	no	0.846	0.798	0.302	4e-15
P69566	653	Ran-binding protein 9 OS=	no	no	0.395	0.130	0.372	3e-06
Q96S59	729	Ran-binding protein 9 OS=	no	no	0.395	0.116	0.372	3e-06
Q28FM1	548	Ran-binding protein 9 OS=	no	no	0.395	0.155	0.372	4e-06

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 17  DIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELT 76
           +++ +++ YLV   YKE  + F   +G  QP   L+ ++ R +I     +G+  +A+ +T
Sbjct: 25  EMNRLIMDYLVTEGYKEAAEKFRIESGT-QPTAPLDSLDDRIKIREAVQKGDLEQAVSMT 83

Query: 77  EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDF 135
            +L  D+L+ N+ L+F L     +EL+  +    A+EFAQ + +  G+   +Y+E+LE  
Sbjct: 84  NKLNPDILDSNQQLYFHLQQQRLIELIREKDIEAAVEFAQGQFSEQGQESGRYLEELEQT 143

Query: 136 MALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL 170
           MALLA++ PE+SP   LL    RQ VA  LN AIL
Sbjct: 144 MALLAFDNPEESPFGDLLHTSQRQKVASELNAAIL 178

Nematostella vectensis (taxid: 45351)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 99/167 (59%), Gaps = 2/167 (1%)

Query: 10  HIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNA 69
           ++ I   D++ ++++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G  
Sbjct: 21  NLHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQI 79

Query: 70  LKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY- 128
            +AI L   L  +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  
Sbjct: 80  QEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESREC 139

Query: 129 VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER 175
           + ++E  +ALLA++ PE+SP   LL++  RQ V   +N+A+L +  R
Sbjct: 140 LTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENR 186

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 17  DIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELT 76
           D++ ++++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L 
Sbjct: 28  DMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALI 86

Query: 77  EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDF 135
             L  +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  
Sbjct: 87  NSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERT 146

Query: 136 MALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER 175
           +ALLA++ PE SP   LL++  RQ V   +N+A+L +  R
Sbjct: 147 LALLAFDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENR 186

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 95/160 (59%), Gaps = 2/160 (1%)

Query: 17  DIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELT 76
           D++ ++++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L 
Sbjct: 28  DMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALI 86

Query: 77  EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDF 135
             L  +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  
Sbjct: 87  NSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERT 146

Query: 136 MALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER 175
           +ALLA++ PE+SP   LL +  RQ V   +N+A+L +  R
Sbjct: 147 LALLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENR 186

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 2/160 (1%)

Query: 17  DIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELT 76
           D++ ++++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L 
Sbjct: 28  DMNRLIMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALI 86

Query: 77  EELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDF 135
             L  +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  
Sbjct: 87  NSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERT 146

Query: 136 MALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER 175
           +ALLA++ PE+SP   LL    RQ V   +N+A+L +  R
Sbjct: 147 LALLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENR 186

Homo sapiens (taxid: 9606)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 98/167 (58%), Gaps = 2/167 (1%)

Query: 10  HIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNA 69
           ++ I   D++ ++++YLV   +KE  + F   +G+ +P   L+ ++ R +I    L+G  
Sbjct: 21  NVHIQRADMNRLIMNYLVTEGFKEAAEKFRMESGI-EPNVDLDSLDERIKIREMVLKGQI 79

Query: 70  LKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY- 128
            +AI L   L  +LL+ N+ L+F L   H +EL+  R+   ALEFAQ++L   G+  +  
Sbjct: 80  QEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLAEQGEESREC 139

Query: 129 VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER 175
           + ++E  +ALLA++ PE+SP   LL++  RQ V   +N+A+L +  R
Sbjct: 140 LTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENR 186

Danio rerio (taxid: 7955)

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 102/195 (52%), Gaps = 13/195 (6%)

Query: 10  HIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQP---ANCLEDMEMRKRILHFALE 66
            + I+ +D++ +V++YLV   Y+E    F   +  +     A+  + M +R  I      
Sbjct: 25  EVNISKSDLNKLVMNYLVIEGYQEAAAKFQEESSTQTTVDLASIADRMAIRSAIQC---- 80

Query: 67  GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG-KV 125
           G+  K IE+  +L  ++L+ N  L+F L     +EL+      EAL+FAQ +L P G + 
Sbjct: 81  GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140

Query: 126 QKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL---AHAERPRYAAME 182
            K++E+LE  ++LL +E+  KSP+  LL    RQ  A  LN AIL   +  + P+   + 
Sbjct: 141 NKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQDKDPKLPTIL 200

Query: 183 RLIQ--QTTAVRQCL 195
           +L++  QT    +C+
Sbjct: 201 KLLKWAQTQLDSKCI 215

Dictyostelium discoideum (taxid: 44689)

>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 18  IHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTE 77
           I  +V SYLVH+ Y  T ++F   T  +     L  ++ R+RI    L G   +AIE T+
Sbjct: 294 IQKMVSSYLVHHGYCATAEAFARSTD-QTVLEELASIKNRQRIQKLVLAGRMGEAIETTQ 352

Query: 78  ELAQDLLEKNKDLHFDLLSLHFVELV 103
           +L   LLE+N +L F L    F+E+V
Sbjct: 353 QLYPSLLERNPNLLFTLKVRQFIEMV 378

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation (By similarity). Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Mus musculus (taxid: 10090)

>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 18  IHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTE 77
           I  +V SYLVH+ Y  T ++F   T  +     L  ++ R+RI    L G   +AIE T+
Sbjct: 369 IQKMVSSYLVHHGYCATAEAFARSTD-QTVLEELASIKNRQRIQKLVLAGRMGEAIETTQ 427

Query: 78  ELAQDLLEKNKDLHFDLLSLHFVELV 103
           +L   LLE+N +L F L    F+E+V
Sbjct: 428 QLYPSLLERNPNLLFTLKVRQFIEMV 453

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. May be involved in signaling of ITGB2/LFA-1 and other integrins. Enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but not affect estrogen-induced transactivation. Stabilizes TP73 isoform Alpha, probably by inhibiting its ubiquitination, and increases its proapoptotic activity. Inhibits the kinase activity of DYRK1A and DYRK1B. Inhibits FMR1 binding to RNA.

Homo sapiens (taxid: 9606)

>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)

Query: 18  IHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTE 77
           I  +V SYLVH+ Y  T ++F   T        L  ++ R+RI    L G   +AIE T+
Sbjct: 221 IQRMVSSYLVHHGYCSTAEAFAKSTDQTVQEE-LASIKNRQRIQKLVLSGRMGEAIETTQ 279

Query: 78  ELAQDLLEKNKDLHFDLLSLHFVELV 103
           +L   LLE+N +L F L    F+E+V
Sbjct: 280 QLYPSLLERNPNLLFTLKVRQFIEMV 305

May act as an adapter protein to couple membrane receptors to intracellular signaling pathways.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
302142570	215	unnamed protein product [Vitis vinifera]	1.0	1.0	0.865	1e-104
225458141	216	PREDICTED: protein C20orf11 homolog [Vit	1.0	0.995	0.865	1e-104
317106667	215	JHL18I08.4 [Jatropha curcas]	1.0	1.0	0.837	1e-103
356518435	215	PREDICTED: UPF0559 protein v1g247787-lik	1.0	1.0	0.818	1e-100
358248824	214	uncharacterized protein LOC100801338 [Gl	0.995	1.0	0.823	1e-100
224066094	215	predicted protein [Populus trichocarpa]	1.0	1.0	0.762	5e-92
449460223	215	PREDICTED: glucose-induced degradation p	1.0	1.0	0.762	1e-90
224082928	215	predicted protein [Populus trichocarpa]	1.0	1.0	0.753	2e-89
222619339	833	hypothetical protein OsJ_03649 [Oryza sa	0.990	0.255	0.713	4e-89
218189143	833	hypothetical protein OsI_03937 [Oryza sa	0.990	0.255	0.713	4e-89

>gi|302142570|emb|CBI19773.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/215 (86%), Positives = 198/215 (92%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPRQYE+ AIND+DIHNIVLSYLVHNC+KETV+SFISCTGMKQPA+  EDME RKRI
Sbjct: 1   MDVDPRQYENAAINDSDIHNIVLSYLVHNCFKETVESFISCTGMKQPADYQEDMEKRKRI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
            HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LVCSRKCTEALEFAQTKLT
Sbjct: 61  FHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLVCSRKCTEALEFAQTKLT 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD+LNRA+LAHA  P  +A
Sbjct: 121 PFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVADSLNRALLAHANLPSCSA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 181 MERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458141|ref|XP_002280458.1| PREDICTED: protein C20orf11 homolog [Vitis vinifera]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/215 (86%), Positives = 198/215 (92%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPRQYE+ AIND+DIHNIVLSYLVHNC+KETV+SFISCTGMKQPA+  EDME RKRI
Sbjct: 2   MDVDPRQYENAAINDSDIHNIVLSYLVHNCFKETVESFISCTGMKQPADYQEDMEKRKRI 61

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
            HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LVCSRKCTEALEFAQTKLT
Sbjct: 62  FHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLVCSRKCTEALEFAQTKLT 121

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD+LNRA+LAHA  P  +A
Sbjct: 122 PFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVADSLNRALLAHANLPSCSA 181

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 182 MERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106667|dbj|BAJ53170.1| JHL18I08.4 [Jatropha curcas]

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 193/215 (89%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPR YE +AI DNDIHN+VLSYLVHNCYKETV+SFISCTGMKQPA+C++DME RKRI
Sbjct: 1   MDVDPRHYEQVAIKDNDIHNVVLSYLVHNCYKETVESFISCTGMKQPADCVQDMEKRKRI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
             +ALEGN LKAIELTEELA DLLE NKDLHFDLLSLHF+ELVC+RKCTEALEFAQTKLT
Sbjct: 61  FRYALEGNVLKAIELTEELAHDLLEINKDLHFDLLSLHFIELVCTRKCTEALEFAQTKLT 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLS+EYRQ V DNLNRAILAHA RP Y A
Sbjct: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSMEYRQQVVDNLNRAILAHANRPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLIQQ T VRQ L+Q+ GKD   PFSLKDF+K 
Sbjct: 181 MERLIQQMTVVRQSLNQDHGKDGLQPFSLKDFLKG 215

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518435|ref|XP_003527884.1| PREDICTED: UPF0559 protein v1g247787-like [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/215 (81%), Positives = 194/215 (90%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MD+DPRQYE++A+NDNDIHNIVLSYL+HNCYKE+V+SFI+CTG  QPA+ LEDM+ RKRI
Sbjct: 1   MDLDPRQYENLAVNDNDIHNIVLSYLIHNCYKESVESFIACTGATQPADYLEDMDKRKRI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
            HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVCSRKCTEALEFAQTKL 
Sbjct: 61  FHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLG 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+LNRAILAH   P Y A
Sbjct: 121 PFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLIQQ T VRQCLSQE GKD  PPFSLKDF++S
Sbjct: 181 MERLIQQATVVRQCLSQEAGKDAPPPFSLKDFLRS 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248824|ref|NP_001239946.1| uncharacterized protein LOC100801338 [Glycine max] gi|255636536|gb|ACU18606.1| unknown [Glycine max]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/215 (82%), Positives = 194/215 (90%), Gaps = 1/215 (0%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MD+DPRQYE++A+NDNDIHNIVLSYL+HNCYKE+V+SFI+CTG KQP + LEDM+ RKRI
Sbjct: 1   MDLDPRQYENLAVNDNDIHNIVLSYLIHNCYKESVESFIACTGAKQPTDYLEDMDKRKRI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
            HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVCSRKCTEALEFAQTKL 
Sbjct: 61  FHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCSRKCTEALEFAQTKLG 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+LNRAILAH   P Y A
Sbjct: 121 PFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILAHLNLPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLIQQ T VRQCLSQE GKD  PPFSLKDF+KS
Sbjct: 181 MERLIQQATVVRQCLSQEAGKD-GPPFSLKDFLKS 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066094|ref|XP_002302009.1| predicted protein [Populus trichocarpa] gi|222843735|gb|EEE81282.1| predicted protein [Populus trichocarpa]

 Score =  342 bits (878), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 164/215 (76%), Positives = 186/215 (86%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPR YE IAI D+DIHNIVLSYLVHNCY ET++SF++C+GM +PA+ +EDME RK I
Sbjct: 1   MDVDPRHYEQIAIKDSDIHNIVLSYLVHNCYGETLESFVACSGMPEPADFIEDMEKRKGI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
           +  ALEGNALKA+ELTE++A DLLE NKDLHFDLLSLHF +LVC++KCTEALEFAQ KLT
Sbjct: 61  VRCALEGNALKAVELTEQVAGDLLENNKDLHFDLLSLHFADLVCAKKCTEALEFAQKKLT 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGK +KYVEKLEDFMALLAYEEPEKSP+FHLL LEYRQHVAD LNRAILAH   P Y A
Sbjct: 121 PFGKEKKYVEKLEDFMALLAYEEPEKSPVFHLLGLEYRQHVADKLNRAILAHTNLPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           +ERLIQQTT VRQ L+Q+ GKD  P FSLKDF+K 
Sbjct: 181 IERLIQQTTVVRQSLNQDHGKDGIPLFSLKDFLKG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460223|ref|XP_004147845.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449521475|ref|XP_004167755.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 164/215 (76%), Positives = 182/215 (84%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPR Y++IA+ND DI NIVLSYLVHNCYKET +SF +CTG+K   + L DM  RKRI
Sbjct: 1   MDVDPRHYDNIAVNDGDIQNIVLSYLVHNCYKETAESFTTCTGLKHHTDYLVDMAKRKRI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
             FA+EGNALKAIELTEE+A  LLEK +DLHFDLLSLHFVELVCSRKCTEALEFAQ KL 
Sbjct: 61  YDFAVEGNALKAIELTEEVAPGLLEKIEDLHFDLLSLHFVELVCSRKCTEALEFAQVKLA 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGK+ KYVEKLEDFMALLAYEEPEKSPMFHLLS++YRQ VA++LNRAILAH   P Y A
Sbjct: 121 PFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAESLNRAILAHGNLPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           MERLI+Q T VRQ LSQELGKD    FSL+DF+KS
Sbjct: 181 MERLIKQVTVVRQSLSQELGKDGFQSFSLRDFLKS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082928|ref|XP_002306895.1| predicted protein [Populus trichocarpa] gi|222856344|gb|EEE93891.1| predicted protein [Populus trichocarpa]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 180/215 (83%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MDVDPR YE I I DNDIHNIVLSYLVHNCY+ET++SF+ CTGM +PA+ +EDME RK I
Sbjct: 1   MDVDPRHYEQIGIKDNDIHNIVLSYLVHNCYRETLESFVDCTGMPEPADYIEDMEKRKGI 60

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
               LEGNALKAIELTE++A DLLE N DLHFDLLSLHFVELVC++KCTEALEFAQ KL 
Sbjct: 61  FCCVLEGNALKAIELTEQVACDLLENNNDLHFDLLSLHFVELVCAKKCTEALEFAQNKLM 120

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGK QK +EKLEDF++LLAYEEPEKSPMFHLL  EYRQHVAD LNRAILAH   P Y A
Sbjct: 121 PFGKEQKLLEKLEDFLSLLAYEEPEKSPMFHLLGSEYRQHVADKLNRAILAHRNLPSYTA 180

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 215
           +ERLIQQT  VRQ L+Q+ GKD  PPFSLKDF+K 
Sbjct: 181 VERLIQQTIVVRQSLNQDHGKDEIPPFSLKDFLKG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619339|gb|EEE55471.1| hypothetical protein OsJ_03649 [Oryza sativa Japonica Group]

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 152/213 (71%), Positives = 183/213 (85%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MD+DPR YE+++++DND+ NIVLSYL+HNC+KET ++F+S TG++ P +   D++ RK I
Sbjct: 2   MDLDPRLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKAI 61

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
             F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV SRKCTEALEF Q KLT
Sbjct: 62  FSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKLT 121

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD+LNRA+LAHA RP Y++
Sbjct: 122 PFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLAHANRPAYSS 181

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 213
           +ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 182 LERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189143|gb|EEC71570.1| hypothetical protein OsI_03937 [Oryza sativa Indica Group]

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 152/213 (71%), Positives = 183/213 (85%)

Query: 1   MDVDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRI 60
           MD+DPR YE+++++DND+ NIVLSYL+HNC+KET ++F+S TG++ P +   D++ RK I
Sbjct: 2   MDLDPRLYENVSVSDNDVRNIVLSYLMHNCFKETAETFLSSTGLELPVDYTVDVDKRKAI 61

Query: 61  LHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 120
             F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV SRKCTEALEF Q KLT
Sbjct: 62  FSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSRKCTEALEFGQKKLT 121

Query: 121 PFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAA 180
           PFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD+LNRA+LAHA RP Y++
Sbjct: 122 PFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLNRAVLAHANRPAYSS 181

Query: 181 MERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 213
           +ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 182 LERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2198796	213	AT1G06060 "AT1G06060" [Arabido	0.986	0.995	0.665	2e-72
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.758	0.714	0.345	2.1e-20
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.758	0.714	0.345	4.4e-20
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.758	0.714	0.345	4.4e-20
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.758	0.714	0.345	9.2e-20
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.758	0.652	0.333	3.1e-19
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.758	0.670	0.321	1.1e-16
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.841	0.793	0.303	1.3e-15
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.683	0.542	0.343	4.9e-13
TAIR|locus:2008683	467	RanBPM "AT1G35470" [Arabidopsi	0.893	0.411	0.273	1.1e-11

TAIR|locus:2198796 AT1G06060 "AT1G06060" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 141/212 (66%), Positives = 163/212 (76%)

Query:     3 VDPRQYEXXXXXXXXXXXXVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILH 62
             +DPRQ+E            V+SYL+HNC+ ET DS  S TG+KQPA   ++ME RK+I+H
Sbjct:     1 MDPRQFEHTVVADNDIHSIVMSYLLHNCFNETADSLASSTGVKQPAIDRDNMERRKQIIH 60

Query:    63 FALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPF 122
             F LE  ALKA ELTE+LAQDLLEKNKDL FDLL LHFVEL+C+  CTEAL+F +T+L PF
Sbjct:    61 FILERKALKAFELTEQLAQDLLEKNKDLQFDLLCLHFVELICAGNCTEALKFGKTRLAPF 120

Query:   123 GKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAME 182
             GKV+KYVEKLED MALLAYE+PEKSPMFHLLS EYRQ VADNLNR IL H   P Y  ME
Sbjct:   121 GKVKKYVEKLEDVMALLAYEDPEKSPMFHLLSSEYRQQVADNLNRTILEHTNHPSYTPME 180

Query:   183 RLIQQTTAVRQCLSQELGKDVHPPFSLKDFMK 214
             R+IQQ T VRQ L++E GKD  PPFSLKD +K
Sbjct:   181 RIIQQVTVVRQYLTEENGKDAFPPFSLKDSLK 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 58/168 (34%), Positives = 99/168 (58%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             +++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L   L  
Sbjct:    33 IMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAISLINSLHP 91

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLA 140
             +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  +ALLA
Sbjct:    92 ELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLI 185
             ++ PE+SP   LL++  RQ V   +N+A+L +  R   P+ A + +L+
Sbjct:   152 FDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 58/168 (34%), Positives = 98/168 (58%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             +++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L   L  
Sbjct:    33 IMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLA 140
             +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  +ALLA
Sbjct:    92 ELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLI 185
             ++ PE SP   LL++  RQ V   +N+A+L +  R   P+ A + +L+
Sbjct:   152 FDNPEDSPFGDLLNMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 58/168 (34%), Positives = 98/168 (58%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             +++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L   L  
Sbjct:    33 IMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLA 140
             +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  +ALLA
Sbjct:    92 ELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLI 185
             ++ PE+SP   LL +  RQ V   +N+A+L +  R   P+ A + +L+
Sbjct:   152 FDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLL 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 58/168 (34%), Positives = 97/168 (57%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             +++YLV   +KE  + F   +G+ +P+  LE ++ R +I    L+G   +AI L   L  
Sbjct:    33 IMNYLVTEGFKEAAEKFRMESGI-EPSVDLETLDERIKIREMILKGQIQEAIALINSLHP 91

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLA 140
             +LL+ N+ L+F L   H +EL+  R+   ALEFAQT+L   G+  +  + ++E  +ALLA
Sbjct:    92 ELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLALLA 151

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLI 185
             ++ PE+SP   LL    RQ V   +N+A+L +  R   P+ A + +L+
Sbjct:   152 FDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 56/168 (33%), Positives = 98/168 (58%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             +++YLV   +KE  + F   +G+ +P   L+ ++ R +I    L+G   +AI L   L  
Sbjct:    55 IMNYLVTEGFKEAAEKFRMESGI-EPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHP 113

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLA 140
             +LL+ N+ L+F L   H +EL+  R+   ALEFAQ++L   G+  +  + ++E  +ALLA
Sbjct:   114 ELLDTNRYLYFHLQQQHLIELIRLRETEAALEFAQSQLAEQGEESRECLTEMERTLALLA 173

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLI 185
             ++ PE+SP   LL++  RQ V   +N+A+L +  R   P+ A + +L+
Sbjct:   174 FDNPEESPFGDLLNMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLL 221

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 54/168 (32%), Positives = 88/168 (52%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             V+++LV   Y E  + F   +G K P   L  +  R  +      GN   AIE   +L  
Sbjct:    48 VMNFLVTEGYVEAAEKFQRESGTK-PEIDLATITDRMAVKKAVQNGNVEDAIEKVNDLNP 106

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKV-QKYVEKLEDFMALLA 140
             ++L+ N +L F L     +EL+   K  EALEFAQ +L P G+  Q ++E+LE  +ALL 
Sbjct:   107 EILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEENQAFLEELEKTVALLV 166

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAIL---AHAERPRYAAMERLI 185
             +++    P+  LL L +R   A  +N AIL   +H + P+  ++ +++
Sbjct:   167 FDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKDPKLPSLLKML 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 57/188 (30%), Positives = 94/188 (50%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             V++YLV   Y+E    F   +  +   + L  +  R  I      G+  K IE+  +L  
Sbjct:    37 VMNYLVIEGYQEAAAKFQEESSTQTTVD-LASIADRMAIRSAIQCGDVEKGIEIVNDLNP 95

Query:    82 DLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQ-KYVEKLEDFMALLA 140
             ++L+ N  L+F L     +EL+      EAL+FAQ +L P G+   K++E+LE  ++LL 
Sbjct:    96 EILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEENNKFLEELEKTISLLV 155

Query:   141 YEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAMERLIQ--QTTAVRQCL 195
             +E+  KSP+  LL    RQ  A  LN AIL    +   P+   + +L++  QT    +C+
Sbjct:   156 FEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQDKDPKLPTILKLLKWAQTQLDSKCI 215

Query:   196 SQELGKDV 203
               ++   V
Sbjct:   216 YPKITNTV 223

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 172 (65.6 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 54/157 (34%), Positives = 77/157 (49%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQ 81
             V+ YLV N Y      F     + +P + +E +  R  I      GN   AIE   EL  
Sbjct:    39 VMDYLVTNGYPAAAQKFALEANI-EPVD-VESIRERVEIRTAIYSGNIQAAIEKINELNP 96

Query:    82 DLLEKNKDLHFDLLSLHFVELV--CSRK----CTEALEFAQTKLTPFGKVQ-KYVEKLED 134
              +L++N  LHF LL L  VEL+  CS       T ALEFA ++L P      +++E LE 
Sbjct:    97 QILDENPSLHFSLLRLQLVELIRSCSVNPDGDITPALEFATSQLAPRAPTNPQFLEDLEK 156

Query:   135 FMALLAYEEPEKSP-MFHLLSLEYRQHVADNLNRAIL 170
              +ALL Y +   +P +  LL  + R+ +   +N AIL
Sbjct:   157 TLALLIYPKENLTPSLAPLLHSDLRRDIYAKVNAAIL 193

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

TAIR|locus:2008683 RanBPM "AT1G35470" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 59/216 (27%), Positives = 106/216 (49%)

Query:    22 VLSYLVHNCYKETVDSFISCTGMKQPA------NCLED------MEMRKRILHFALEGNA 69
             V +YL+H  Y+ET+D+F   T    P       N +++      ++ RK +      G  
Sbjct:   252 VKTYLLHYGYEETLDAFNLATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEI 311

Query:    70 LKAIELTEELAQDLLEKNKDLHFDLLSLH-FVELVCSRKCTEALEFAQTKLTPFGKVQKY 128
               A+   ++L   +++ +K +   LL    F+ELV   K  E + + + +L  F  +  +
Sbjct:   312 DTALAELQKLYPQIVQDDKSVVCFLLHCQKFIELVRVGKLEEGVNYGRLELAKFVGLTGF 371

Query:   129 VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILA------HAERPRY--AA 180
              + +ED  ALLAYE+PE+S +++ L    R+ VAD +N AIL+        +R  +  + 
Sbjct:   372 QDIVEDCFALLAYEKPEESSVWYFLEDSQRELVADAVNAAILSTNPNKKDVQRSCHLQSH 431

Query:   181 MERLIQQTTAVRQCLSQE-LGKDVHPPFSLKDFMKS 215
             +E+L++Q T    CL +  L  D    F L+  + +
Sbjct:   432 LEKLLRQLTVC--CLERRSLNGDQGETFRLRHVLNN 465

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	2e-29
smart00757	99	smart00757, CRA, CT11-RanBPM	3e-19
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	2e-08

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  106 bits (267), Expect = 2e-29
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 53  DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEAL 112
             + R +I    L G+  +A+E   E   +LL+ N +L F+L    F+EL+   K  EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 113 EFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPE-KSPMFHLLSLEYRQHVADNLNRAILA 171
           E+A+  L PF   ++++++++  M LLA+ +P   SP   LLS    + +A+  NRAIL 
Sbjct: 61  EYARENLAPFFN-EQHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILK 119

Query: 172 HAERPRYAAMERLIQQTTAVRQ 193
                  + +E L++   +  +
Sbjct: 120 LLGLSSESPLEILLKAGLSALK 141

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 106 RKCTEALEFAQTKLTPFGKVQKYVEK-LEDFMALLAYEEP-EKSPMFHLLSLEYRQHVAD 163
            K  EAL +A+  L PF K  +   K LE  MALLAY +P E SP   LLS   R+ +A+
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 164 NLNRAILAHAE-RPRYAAMERLIQQTTAVRQCLSQE 198
            LN AIL     +   + +E L+    A  + L ++
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 57  RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTE 110
           RKRI    L+G+  +A+E    L   LLE+N  L F+L    F+ELV   K  E
Sbjct: 5   RKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	100.0
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.97
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.95
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.76
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.46
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.42
KOG1477	469	consensus SPRY domain-containing proteins [General	98.9
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.62
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	98.39
COG5109	396	Uncharacterized conserved protein, contains RING Z	98.27
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.83
KOG1333	241	consensus Uncharacterized conserved protein [Funct	94.05
PF09398	81	FOP_dimer: FOP N terminal dimerisation domain; Int	93.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	86.58
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	82.89

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-41  Score=272.73  Aligned_cols=197  Identities=36%  Similarity=0.530  Sum_probs=187.6

Q ss_pred             CChhhhhcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHH
Q 027999            3 VDPRQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQD   82 (215)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~   82 (215)
                      .+.+.+.++++..+++|+||++||+|+||.|+|+.|.+|+|++.|..+.+.+..|.+|+.+|..|+|..||+.+++++|.
T Consensus        14 ~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe   93 (228)
T KOG2659|consen   14 EWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE   93 (228)
T ss_pred             hhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH
Confidence            35678999999999999999999999999999999999999998777899999999999999999999999999999999


Q ss_pred             HHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCC-chhHHHHHHHHHhHhccCCCCCCchhhhCCHHHHHHH
Q 027999           83 LLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHV  161 (215)
Q Consensus        83 l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~-~~~~~~~l~~~~~lla~~~~~~s~~~~ll~~~~r~~l  161 (215)
                      +++.|.+|.|.|++|+||||||.|...+||+|+|++++|++. ++.+..+++++|++|+|++|+.||++++++.++|.++
T Consensus        94 iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kv  173 (228)
T KOG2659|consen   94 ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKV  173 (228)
T ss_pred             HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996 6789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhhc
Q 027999          162 ADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQEL  199 (215)
Q Consensus       162 a~~vn~~il~~~~~~~~s~Le~l~~~~~~~~~~l~~~~  199 (215)
                      |+.||++|+.+++.+..+.|..|++...+.+..+..+.
T Consensus       174 A~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~  211 (228)
T KOG2659|consen  174 ASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREK  211 (228)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhh
Confidence            99999999999999999999999998888887776643

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=100.00  E-value=1.9e-32  Score=211.75  Aligned_cols=140  Identities=35%  Similarity=0.577  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHH
Q 027999           54 MEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLE  133 (215)
Q Consensus        54 ~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~  133 (215)
                      +.+|++|+++|++||+++|++|+++++|.+++.++.++|.|++|+|||||++|++.+||+|||+++.++.  ..+.++++
T Consensus         2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~--~~~~~~l~   79 (145)
T PF10607_consen    2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFN--DEFLEELK   79 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999997775  46889999


Q ss_pred             HHHhHhccCCCCC---CchhhhCCHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Q 027999          134 DFMALLAYEEPEK---SPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCL  195 (215)
Q Consensus       134 ~~~~lla~~~~~~---s~~~~ll~~~~r~~la~~vn~~il~~~~~~~~s~Le~l~~~~~~~~~~l  195 (215)
                      ++|++|+|++|..   +|+++++++++|+.|++.||+++|..+|+|+.|+|+.++++..++...+
T Consensus        80 ~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   80 KLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            9999999999887   8999999999999999999999999999999999999999988876543

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.97  E-value=6.7e-30  Score=217.46  Aligned_cols=176  Identities=19%  Similarity=0.225  Sum_probs=166.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCC
Q 027999            9 EHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNK   88 (215)
Q Consensus         9 ~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~   88 (215)
                      +..++++..++++|++||.|+||.+||..|.+++.+.... +.+.+...+.|+++|+.|++.+|+.||++|.-.|-+.++
T Consensus       109 ~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlv-D~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S  187 (389)
T KOG0396|consen  109 NSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLV-DSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEES  187 (389)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhH-hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccc
Confidence            3467889999999999999999999999999999998665 588999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccC-CCCCCchhhhCCHHHHHHHHHHHHH
Q 027999           89 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYE-EPEKSPMFHLLSLEYRQHVADNLNR  167 (215)
Q Consensus        89 ~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~-~~~~s~~~~ll~~~~r~~la~~vn~  167 (215)
                      .++|.++.|+|||||+.++..+||+|++++|+|++  ..+..+++.+||++||+ .++.++|..+++..+|+.+++.|-+
T Consensus       188 ~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~--~~~~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s  265 (389)
T KOG0396|consen  188 SLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWA--KSHKSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLS  265 (389)
T ss_pred             hhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhh--hhhHHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999  68899999999999996 5667779999999999999999999


Q ss_pred             HHHHhcCCCCCcHHHHHHHH
Q 027999          168 AILAHAERPRYAAMERLIQQ  187 (215)
Q Consensus       168 ~il~~~~~~~~s~Le~l~~~  187 (215)
                      ..++.+|+|..|+|-+.++.
T Consensus       266 ~a~~l~~i~~~~~L~~~l~~  285 (389)
T KOG0396|consen  266 EALKLFGIPINPALTIYLQA  285 (389)
T ss_pred             HHHHHhCCCCCcHHHHHHHh
Confidence            99999999999999999985

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.8e-26  Score=198.52  Aligned_cols=175  Identities=22%  Similarity=0.357  Sum_probs=159.2

Q ss_pred             cCCCCHHH-HHHHHHHHHHhhcHHHHHHHHHHhhCCCCC-CCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccC
Q 027999           10 HIAINDND-IHNIVLSYLVHNCYKETVDSFISCTGMKQP-ANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKN   87 (215)
Q Consensus        10 ~~~~~~~~-l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~-~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~   87 (215)
                      ++..+... +|.+|+.|++++|..++|..|++|+|...+ ......+.+.++|.++|..||+.+|++|+..+...|.+.+
T Consensus       110 ~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~  189 (394)
T KOG2817|consen  110 SVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS  189 (394)
T ss_pred             CcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc
Confidence            44455444 499999999999999999999999999765 3345678899999999999999999999999999999999


Q ss_pred             CcchhhhhHHHHHHHHhccchh--hHHHHHHHhccccCCchhHHHHHHHHHhHhcc--CCCCCCchhhhCCHHHHHHHHH
Q 027999           88 KDLHFDLLSLHFVELVCSRKCT--EALEFAQTKLTPFGKVQKYVEKLEDFMALLAY--EEPEKSPMFHLLSLEYRQHVAD  163 (215)
Q Consensus        88 ~~l~F~L~~q~fiEli~~~~~~--~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~--~~~~~s~~~~ll~~~~r~~la~  163 (215)
                      +.|+|.|+.++|+++++.|...  +||.|||++++||+  ..+.++||.+|++|.|  ...++|||.+++++..|..+..
T Consensus       190 s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~--~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~  267 (394)
T KOG2817|consen  190 SSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFV--ADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTE  267 (394)
T ss_pred             ccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccc--cchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHH
Confidence            9999999999999999998766  99999999999998  6668999999999999  3478999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCcHHHHHHH
Q 027999          164 NLNRAILAHAERPRYAAMERLIQ  186 (215)
Q Consensus       164 ~vn~~il~~~~~~~~s~Le~l~~  186 (215)
                      +|-+..|..+|+|.+|||..++.
T Consensus       268 ~f~r~ycallg~s~eSPL~v~v~  290 (394)
T KOG2817|consen  268 EFTREYCALLGISVESPLSVLVN  290 (394)
T ss_pred             HHHHHHHHHcCCCccCcHHHHHH
Confidence            99999999999999999988776

>smart00757 CRA CT11-RanBPM

Probab=99.76  E-value=1.1e-17  Score=120.91  Aligned_cols=94  Identities=39%  Similarity=0.560  Sum_probs=85.8

Q ss_pred             chhhHHHHHHHhccccCC-chhHHHHHHHHHhHhccCCC-CCCchhhhCCHHHHHHHHHHHHHHHHHhc-CCCCCcHHHH
Q 027999          107 KCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEP-EKSPMFHLLSLEYRQHVADNLNRAILAHA-ERPRYAAMER  183 (215)
Q Consensus       107 ~~~~Al~~ar~~l~~~~~-~~~~~~~l~~~~~lla~~~~-~~s~~~~ll~~~~r~~la~~vn~~il~~~-~~~~~s~Le~  183 (215)
                      ++.+||+|||+++++|.. ++...++|+++|++|+|+++ +.+||++++++++|+.+++.||++||..+ |.+.+|+|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999995 44457899999999999998 89999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 027999          184 LIQQTTAVRQCLSQELG  200 (215)
Q Consensus       184 l~~~~~~~~~~l~~~~~  200 (215)
                      ++++..++...+....+
T Consensus        82 ~~~~~~~~~~~l~~~~~   98 (99)
T smart00757       82 LLSAGLAALKTLLEKGG   98 (99)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999888876554

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>smart00668 CTLH C-terminal to LisH motif

Probab=99.46  E-value=1.8e-13  Score=89.22  Aligned_cols=56  Identities=38%  Similarity=0.524  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchh
Q 027999           54 MEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCT  109 (215)
Q Consensus        54 ~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~  109 (215)
                      +..|..|+++|+.|+|++|++|++.++|.+.+.++.+.|.|++|+|||+++.|+..
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~~   57 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLE   57 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCcC
Confidence            46889999999999999999999999999999999999999999999999988653

Alpha-helical motif of unknown function.

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.42  E-value=1.4e-12  Score=113.45  Aligned_cols=170  Identities=16%  Similarity=0.165  Sum_probs=139.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHh-cHHHHccCCcc
Q 027999           12 AINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEEL-AQDLLEKNKDL   90 (215)
Q Consensus        12 ~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~-~p~l~~~~~~l   90 (215)
                      -+.+.++.+++.+.|+..||.+++..++.|+|+..+.      +.-+.+.+++++|+|+.++..+... +++ ..+....
T Consensus        14 likk~efi~il~q~l~slgy~~S~~~lE~es~ll~~t------at~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea   86 (519)
T KOG0293|consen   14 LIKKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPT------ATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEA   86 (519)
T ss_pred             eeccchhhHhHHHHHHhcCccccchhhHHhhCccccc------chHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHH
Confidence            3567789999999999999999999999999997665      4567888999999999999888776 555 5556789


Q ss_pred             hhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCCCCCch--hhhCCHHHHHHHHHHHHHH
Q 027999           91 HFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPM--FHLLSLEYRQHVADNLNRA  168 (215)
Q Consensus        91 ~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~~s~~--~~ll~~~~r~~la~~vn~~  168 (215)
                      .|.+.+|.|+|.++.|++..|+...|..+.+...+   .+.+.++.+.|.+++...+..  -.-.....|..|.+++...
T Consensus        87 ~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~---~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elsky  163 (519)
T KOG0293|consen   87 MFLVNKQIFLEFLKTGSISHALPVLRNPVLYLRKN---KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKY  163 (519)
T ss_pred             HHHHHHHHHHHHHhhccHhhhhHhhhcchhhhhhh---HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhh
Confidence            99999999999999999999999999877776544   467788889999875332221  0111234588899999999


Q ss_pred             HHHhcCCCCCcHHHHHHHHHHHHH
Q 027999          169 ILAHAERPRYAAMERLIQQTTAVR  192 (215)
Q Consensus       169 il~~~~~~~~s~Le~l~~~~~~~~  192 (215)
                      |....-+| +.+||.|++|+...|
T Consensus       164 i~p~illP-~rRLehLl~qAv~~Q  186 (519)
T KOG0293|consen  164 IPPNILLP-KRRLEHLLEQAVKYQ  186 (519)
T ss_pred             CCHhhcCC-hHHHHHHHHHHHHHH
Confidence            99999997 689999999999885

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=98.90  E-value=4.9e-10  Score=101.41  Aligned_cols=195  Identities=18%  Similarity=0.101  Sum_probs=154.2

Q ss_pred             HHHHHHHHHhhcHHHHHHHHHHhhCCCCCC---CCH-HhHH-------HHHHHHHHHHcCCHHHHHHHHHHhcHHHHc--
Q 027999           19 HNIVLSYLVHNCYKETVDSFISCTGMKQPA---NCL-EDME-------MRKRILHFALEGNALKAIELTEELAQDLLE--   85 (215)
Q Consensus        19 ~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~---~~~-~~~~-------~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~--   85 (215)
                      ...+..|+++.||.+++..|+..+.-..++   ... ....       .+...+.-+-.|.+..+++.+.+.-+....  
T Consensus       253 t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~  332 (469)
T KOG1477|consen  253 TVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVG  332 (469)
T ss_pred             CCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccc
Confidence            357889999999999999998876432111   001 1111       233334444445555566666555554444  


Q ss_pred             -----cCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCC---chhHHHHHHHHHhHhccCCCCCCchhhhCCHHH
Q 027999           86 -----KNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK---VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEY  157 (215)
Q Consensus        86 -----~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~---~~~~~~~l~~~~~lla~~~~~~s~~~~ll~~~~  157 (215)
                           ..+...+.+.|+.+|.+.+-+.+...+++.+..+++...   +......+...++|++|.+|..||...++++.+
T Consensus       333 ~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~~~~~  412 (469)
T KOG1477|consen  333 QVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLLDPIQ  412 (469)
T ss_pred             eeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCccccccCccc
Confidence                 346788999999999999999999999999988888775   567788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhhhhc
Q 027999          158 RQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMK  214 (215)
Q Consensus       158 r~~la~~vn~~il~~~~~~~~s~Le~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  214 (215)
                      |+-+++.+|.+|+...+.++.+.|+.++.|+.++...+....+++. .+++++++++
T Consensus       413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  468 (469)
T KOG1477|consen  413 REPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLYARDNPPRN-DFVRDRDYFH  468 (469)
T ss_pred             chhHHhhhcccccccCCCCccchhhhhhccchhhHhhhhhcCCCcc-ceecchhhhc
Confidence            9999999999999999999999999999999999999988887766 7778877654

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.62  E-value=5.4e-08  Score=53.55  Aligned_cols=27  Identities=33%  Similarity=0.677  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 027999           16 NDIHNIVLSYLVHNCYKETVDSFISCT   42 (215)
Q Consensus        16 ~~l~~lI~~yL~~~Gy~eta~~f~~e~   42 (215)
                      ++||++|.+||.++||.+||.+|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=98.39  E-value=6.8e-07  Score=51.23  Aligned_cols=32  Identities=25%  Similarity=0.648  Sum_probs=29.4

Q ss_pred             CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCC
Q 027999           14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMK   45 (215)
Q Consensus        14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~   45 (215)
                      .+.+++++|++||.++||.+||.+|++|+++.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999999999874

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.27  E-value=1.4e-05  Score=68.00  Aligned_cols=185  Identities=14%  Similarity=0.145  Sum_probs=139.9

Q ss_pred             hhhhcCCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHc
Q 027999            6 RQYEHIAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLE   85 (215)
Q Consensus         6 ~~~~~~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~   85 (215)
                      +.+..++++...++.+--.++.+.|-..-+..|+.+.|...+....+.+...+.|.+-|.+.+...-|+|+ +....+.+
T Consensus        91 n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~k  169 (396)
T COG5109          91 NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSK  169 (396)
T ss_pred             hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCcccc
Confidence            44555666677777788888888899999999999999988777778899999999999999999999999 55556666


Q ss_pred             cCCcchhhhhHHHHHHHH-hccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCC--CCC-------chhhhC--
Q 027999           86 KNKDLHFDLLSLHFVELV-CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEP--EKS-------PMFHLL--  153 (215)
Q Consensus        86 ~~~~l~F~L~~q~fiEli-~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~--~~s-------~~~~ll--  153 (215)
                      .++..++.|+......+. ...++++|+-+.++.++.|.  +.|...++.++-.+.+-..  ..+       ...+++  
T Consensus       170 gdtesel~l~~~~~esl~l~hk~~~~a~r~c~t~~a~f~--~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~k  247 (396)
T COG5109         170 GDTESELELYLVSHESLLLIHKRYDEALRLCFTKLASFV--PKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKK  247 (396)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHH
Confidence            666666666555544433 22379999999999999999  8888888888877776211  000       011111  


Q ss_pred             ----------C--HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH-HHHHHH
Q 027999          154 ----------S--LEYRQHVADNLNRAILAHAERPRYAAMERLIQQ-TTAVRQ  193 (215)
Q Consensus       154 ----------~--~~~r~~la~~vn~~il~~~~~~~~s~Le~l~~~-~~~~~~  193 (215)
                                +  ...|..+-..|-+..|+..|+|-+|+|..+|.. +.+...
T Consensus       248 sligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~  300 (396)
T COG5109         248 SLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQ  300 (396)
T ss_pred             hhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHH
Confidence                      1  245899999999999999999999999998874 455443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.83  E-value=0.00025  Score=61.05  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=115.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcc
Q 027999           11 IAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDL   90 (215)
Q Consensus        11 ~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~p~l~~~~~~l   90 (215)
                      +.+...++.++|.+||-.+....|...+..|+++....     ......+.+.|.+|+|+..+..+++..     --..-
T Consensus         3 ieiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLNT-----VDSvd~Fv~dI~sG~WD~VL~~vqsLK-----LP~kk   72 (508)
T KOG0275|consen    3 IEIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNT-----VDSVDGFVNDINSGHWDTVLKTVQSLK-----LPDKK   72 (508)
T ss_pred             eeeecchHHHHHHHHHhhhhHHHHHHHHHHhhccceee-----chhHHHHHHhcccCchHHHHHHHHhcc-----CchhH
Confidence            44556689999999999999999999999999976433     344567889999999999999988763     11234


Q ss_pred             hhhhhHHHHHHHHhccchhhHHHHHHHhccccCC----chhHHHHHHHHHhHhc--cCCCCCCchhhhCCHHHHHHHHHH
Q 027999           91 HFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK----VQKYVEKLEDFMALLA--YEEPEKSPMFHLLSLEYRQHVADN  164 (215)
Q Consensus        91 ~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~----~~~~~~~l~~~~~lla--~~~~~~s~~~~ll~~~~r~~la~~  164 (215)
                      ...|+-|-.+|||.-.....|-..+|+. .|...    .|+..-.++   .+|.  |-||. ..|.+--.+.+|..+|..
T Consensus        73 L~dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE---~ll~R~YFDp~-EaY~dssKEkrRa~IAQ~  147 (508)
T KOG0275|consen   73 LIDLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLE---NLLNRSYFDPR-EAYGDSSKEKRRAVIAQA  147 (508)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHH---HHhcccccChh-hhcCcchHHHHHHHHHHH
Confidence            4678899999999877677776666642 22221    344444455   4553  44552 335553335677888876


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Q 027999          165 LNRAILAHAERPRYAAMERLIQQTTAVRQCLSQ  197 (215)
Q Consensus       165 vn~~il~~~~~~~~s~Le~l~~~~~~~~~~l~~  197 (215)
                      +....   .-. +.|+|-.|+-|+..-++..+-
T Consensus       148 ls~EV---~VV-ppSRLlaLlGQaLKWQqHQGL  176 (508)
T KOG0275|consen  148 LSGEV---HVV-PPSRLLALLGQALKWQQHQGL  176 (508)
T ss_pred             hcCce---EEc-ChHHHHHHHHHHhhhHhhcCC
Confidence            65432   223 468999999988666655443

>KOG1333 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=0.28  Score=39.80  Aligned_cols=137  Identities=11%  Similarity=0.128  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHH----HHhcHHHHccC----
Q 027999           16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIELT----EELAQDLLEKN----   87 (215)
Q Consensus        16 ~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~----~~~~p~l~~~~----   87 (215)
                      +..+.+|-+||+-.|+.-|.++|-.|....-..... .=....++.++|...|++.--+.-    +..|..|....    
T Consensus         6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~fr-vdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~   84 (241)
T KOG1333|consen    6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFR-VDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTI   84 (241)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            457899999999999999999998776543221100 002334566777777776543332    23333333321    


Q ss_pred             CcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCCC-CCchhhhCCHHH
Q 027999           88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPE-KSPMFHLLSLEY  157 (215)
Q Consensus        88 ~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~-~s~~~~ll~~~~  157 (215)
                      ..++=.|.+..++-.+.++..++|=+|-++.-+...++++..+++    .+=..++-. ..|++.+++...
T Consensus        85 ~kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqnq~eWkDWF----~fPf~~~a~~tppf~~~F~ktw  151 (241)
T KOG1333|consen   85 HKLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQNQAEWKDWF----VLPFLPSAKDTPPFRKYFDKTW  151 (241)
T ss_pred             HHHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhcchhhhhhe----ecccCCCCCCCccHHHHHHhhh
Confidence            135566777778888888889998888876555554455444432    111112222 445666665443

>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes

Probab=93.17  E-value=0.19  Score=34.84  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHhhCCCCC
Q 027999           17 DIHNIVLSYLVHNCYKETVDSFISCTGMKQP   47 (215)
Q Consensus        17 ~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~   47 (215)
                      .++.||.+||-.+||.=|+..|..|+|.+..
T Consensus        20 Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~   50 (81)
T PF09398_consen   20 LINELIREYLEFNNLDYTLSVFQPESGQPEE   50 (81)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred             HHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence            5799999999999999999999999998643

This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=86.58  E-value=4  Score=26.03  Aligned_cols=56  Identities=23%  Similarity=0.129  Sum_probs=35.5

Q ss_pred             HHHcCCHHHHHHHHHHhcHHHHccCCcchhhhhHHHHHHHHhccchhhHHHHHHHhccccC
Q 027999           63 FALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG  123 (215)
Q Consensus        63 ~I~~G~i~~Ai~~~~~~~p~l~~~~~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~  123 (215)
                      ++..|++++|++.+++... ....+..+.+.|    ..=+++.|+.++|.....+.+....
T Consensus         1 ll~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l----a~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ-RNPDNPEARLLL----AQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH-HTTTSHHHHHHH----HHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             ChhccCHHHHHHHHHHHHH-HCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4778999999999987531 122233444432    2224578999999998886555443

...

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=82.89  E-value=9.4  Score=28.68  Aligned_cols=59  Identities=14%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             HHHHHHHhhcHHHHHHHHHHhhC--CCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 027999           21 IVLSYLVHNCYKETVDSFISCTG--MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELA   80 (215)
Q Consensus        21 lI~~yL~~~Gy~eta~~f~~e~~--~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~~~~~~   80 (215)
                      -|.+.+ ..|-.+.|-..+++..  +.........--.+.++.+.|.+|++.+||++++.+.
T Consensus         7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l   67 (145)
T PF10607_consen    7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL   67 (145)
T ss_pred             HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            355556 8888888888876632  1111123555567789999999999999999999865

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 51/182 (28%)

Query: 9   EHIAINDNDIHNIVLSYLVHNCYK--ETVDSFISCTGMKQPANCLEDMEMRKRILHFAL- 65
           + +A  DN        +   NC K    ++S +         N LE  E RK     ++ 
Sbjct: 339 DGLATWDN--------WKHVNCDKLTTIIESSL---------NVLEPAEYRKMFDRLSVF 381

Query: 66  -EG-----NALKAI--ELTEELAQDLLEK-------NKDLHFDLLSLHFVELVCSRKCTE 110
                     L  I  ++ +     ++ K        K      +S+  + L    K   
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 111 ALEFAQTKLTPFGKVQKYVEKLEDFMAL---------LAY-----EEPEKSPMFHLLSLE 156
                ++ +  +   + +    +D +           + +     E PE+  +F ++ L+
Sbjct: 442 EYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 157 YR 158
           +R
Sbjct: 500 FR 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	96.4
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.08
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.37
2d68_A	82	FOP, FGFR1OP; alpha helical bundle, dimer, cell cy	89.57
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	88.43

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=96.40  E-value=0.0036  Score=43.01  Aligned_cols=54  Identities=20%  Similarity=0.234  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027999           15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIEL   75 (215)
Q Consensus        15 ~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~   75 (215)
                      +++||+-|++||...||.+++.+|.+|++++.+.   +.  .  ..-.-+++.+|+..+.+
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~---~~--~--~ky~gLLEKKWTSViRL   63 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE---EL--D--KKYAGLLEKKWTSVIRL   63 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCH---HH--H--HHHTTHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCc---hh--h--hhhhhhhhhhHHHHHHH
Confidence            4689999999999999999999999999876542   10  1  12344555556555543

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.08  E-value=0.0052  Score=42.45  Aligned_cols=38  Identities=16%  Similarity=0.332  Sum_probs=33.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCC
Q 027999           11 IAINDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPA   48 (215)
Q Consensus        11 ~~~~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~   48 (215)
                      ++++.+++|.||-.||...||..||-+|.+|+++..+.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~   38 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSN   38 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence            46789999999999999999999999999999886543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.37  E-value=0.051  Score=46.55  Aligned_cols=55  Identities=18%  Similarity=0.233  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCCCCCHHhHHHHHHHHHHHHcCCHHHHHHH
Q 027999           14 NDNDIHNIVLSYLVHNCYKETVDSFISCTGMKQPANCLEDMEMRKRILHFALEGNALKAIEL   75 (215)
Q Consensus        14 ~~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~~~~~~~~~~r~~I~~~I~~G~i~~Ai~~   75 (215)
                      .+++++++|++||..+||.+++.+|.+|++++...       ........+++++|+..+..
T Consensus         7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~~~~~~~w~~~~~l   61 (410)
T 1vyh_C            7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNE-------ELDKKYAGLLEKKWTSVIRL   61 (410)
T ss_dssp             --------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCc-------chhhhhhchhhhhhhheeeH
Confidence            35789999999999999999999999999875322       11233344566777666553

>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}

Probab=89.57  E-value=0.61  Score=31.45  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhhCCCC
Q 027999           16 NDIHNIVLSYLVHNCYKETVDSFISCTGMKQ   46 (215)
Q Consensus        16 ~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~   46 (215)
                      ..++.||.+||-..||.=|+..|..|+|.+.
T Consensus        19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~   49 (82)
T 2d68_A           19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQ   49 (82)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHcCCcchHHhhhhccCCCC
Confidence            4688999999999999999999999999864

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=88.43  E-value=0.49  Score=35.78  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             CcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCCCCCch
Q 027999           88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPM  149 (215)
Q Consensus        88 ~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~~s~~  149 (215)
                      ..+.|=+-+.-|++|+.+|...+|-.|..+.-..+.  +.+.+.++.+.++.--.+..+.+.
T Consensus        50 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~  109 (156)
T 2nxp_A           50 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNET  109 (156)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHH
Confidence            478899999999999999999999999987666664  667788887665443333334443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.96
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	87.98

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00032  Score=45.35  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHhhcHHHHHHHHHHhhCCCCC
Q 027999           15 DNDIHNIVLSYLVHNCYKETVDSFISCTGMKQP   47 (215)
Q Consensus        15 ~~~l~~lI~~yL~~~Gy~eta~~f~~e~~~~~~   47 (215)
                      +++||+-|.+||..+||.+++.+|.+|++++.+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~   39 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   39 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCC
Confidence            578999999999999999999999999987643

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.98  E-value=0.26  Score=35.26  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=44.7

Q ss_pred             CcchhhhhHHHHHHHHhccchhhHHHHHHHhccccCCchhHHHHHHHHHhHhccCCCCCCc
Q 027999           88 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSP  148 (215)
Q Consensus        88 ~~l~F~L~~q~fiEli~~~~~~~Al~~ar~~l~~~~~~~~~~~~l~~~~~lla~~~~~~s~  148 (215)
                      ..+.|=+...-|++|+.+|+..+|..|-.+.-..+.  ..+.+.|+++.++..-.+....+
T Consensus        43 ~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~--~~~~~~I~~L~~i~~~~~l~~n~  101 (149)
T d2nxpa1          43 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNE  101 (149)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCHHHHhhhH
Confidence            468899999999999999999999999997655554  67788888776654433333333