Citrus Sinensis ID: 028009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Secondary Structure (PSIPRED)
ccHHccHHHHHHHHHHHHHHHHHHcEEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEcccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHcEEEEEccccccEEEEEEcccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEEccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MEKRQRHRYVATYMILALLMSLIGRLSslsvtvndvECVYEYVIYegdtvagnfvvvdhdifwstdhpgidftvtspagnvvhtvkgtsgdkfefkaprsgmykfcfnnpystpetvSFYIHVghipnehnlakdehldpINVKIAELREALESVVSEQKYLRARdtrhrhtnestrKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Flexible Loop (DISEMBL)
mekrqrhrYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHtvkgtsgdkfefkapRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVseqkylrardtrhrhtnestrkrllGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Low Complexity Region (SEG)
MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Disordered region (IsUnstruct)
*******RYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVV*********************KRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA****
Disordered Region (DISOPRED)
************YMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVH***G**GDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEH*******LDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA****
Disordered Region (DISEMBL)
********YVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Disordered Region (DISPRO)
****QRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9LIL4	214	Transmembrane emp24 domai	yes	no	0.995	1.0	0.813	1e-102
Q9S7M9	208	Transmembrane emp24 domai	no	no	0.948	0.980	0.331	5e-28
Q769F9	205	Transmembrane emp24 domai	yes	no	0.8	0.839	0.320	2e-18
Q54BN0	209	Transmembrane emp24 domai	no	no	0.804	0.827	0.316	1e-16
Q9R0Q3	201	Transmembrane emp24 domai	yes	no	0.637	0.681	0.309	2e-15
P49020	196	Transmembrane emp24 domai	yes	no	0.637	0.698	0.309	2e-15
Q63524	201	Transmembrane emp24 domai	yes	no	0.637	0.681	0.309	2e-15
Q15363	201	Transmembrane emp24 domai	yes	no	0.637	0.681	0.309	2e-15
A7SXK3	203	Transmembrane emp24 domai	N/A	no	0.637	0.674	0.273	3e-14
Q9Y3B3	224	Transmembrane emp24 domai	no	no	0.762	0.732	0.3	1e-13

>sp|Q9LIL4|P24B3_ARATH Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana GN=At3g22845 PE=2 SV=1

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 196/215 (91%), Gaps = 1/215 (0%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+RQ   +V   + L LL S I ++SSLSVTVND ECV EYV+YEGDTV+GNFVVVDHD
Sbjct: 1   MERRQAKIHVFVLIGLILLNS-INQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 59

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW +DHPG+DFTVTSPAGN+V T+KGTSGDKFEFKAP+SGMYKFCF+NPYSTPETVSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIPNEH+LAKDEHLDP+NVKIAELREALESVV+EQKYL+ARDTRHRHTNESTRKR+
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+ LA AS LQVLYIRKLFSKSVAYNRV
Sbjct: 180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7M9|P24B2_ARATH Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana GN=At3g07680 PE=1 SV=1

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 1/205 (0%)

Query: 11  ATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGI 70
            T ++L LL S    L  +   ++  EC      YEGDT+  +FVV+  D  W  +  G+
Sbjct: 5   GTIVLLGLLWSFQATLG-IRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGV 63

Query: 71  DFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEH 130
           D  +  P G  +H  +     K +F   + G+Y+FCF N     ET+ F + +GH     
Sbjct: 64  DLVIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYD 123

Query: 131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             AKDEH  P+  +I++L EAL ++  EQ +L A+  R    NE+  KR +   + E   
Sbjct: 124 QHAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFA 183

Query: 191 LAMASALQVLYIRKLFSKSVAYNRV 215
           L  AS LQV  +R+LF + +  +RV
Sbjct: 184 LIGASFLQVYLLRRLFERKLGMSRV 208

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity). Interacts with p24delta5 at endoplasmic reticulum export sites for endoplasmic reticulum exit and coupled transport to the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q769F9|TMEDA_DICDI Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 9/181 (4%)

Query: 28  SLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKG 87
           S  V+    EC+YE +  +    A  F V+            IDFT+ SP   +V++ + 
Sbjct: 26  SFKVSAKVEECIYEEIGVDLSFTA-MFQVIQGG------FNDIDFTIISPDKRIVYSGQR 78

Query: 88  TSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKI 145
            S      ++  +G+Y FCF+N  S  T +TVSF + VG       +AK + L PI   I
Sbjct: 79  ESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSI 138

Query: 146 AELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKL 205
             L + + +V +EQ Y + R+  HR+T EST  R+L +++ E  +L   S  Q+ Y+R+ 
Sbjct: 139 MTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLIALSIWQIYYLRRF 198

Query: 206 F 206
           F
Sbjct: 199 F 199

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54BN0|TMEDB_DICDI Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 23/196 (11%)

Query: 22  LIGRLSSLSVTV--NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAG 79
           LIG  S+L++ V     EC Y + I  G T    + V+   +        I+  +T P G
Sbjct: 18  LIGSSSALTLQVEPKSQECFYNF-IESGKTSLLLYQVIRGGLL------DINVKLTDPKG 70

Query: 80  NVVH-------TVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEH 130
           N +         +KG    K  F A  SG YK CFNN  S  T + V+F           
Sbjct: 71  NTIFERLHFDTQMKG----KQSFTAGESGAYKVCFNNEMSRFTAKVVTF-TWASEEEGVK 125

Query: 131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
            +AK + + P++  + ++   L+SV+ EQK LR R+  +R T+EST  R++ +TI E ++
Sbjct: 126 EVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIV 185

Query: 191 LAMASALQVLYIRKLF 206
           L +    Q+ Y+RK F
Sbjct: 186 LVVMGVGQIWYLRKWF 201

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9R0Q3|TMED2_MOUSE Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 70  IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIP 127
           ID  +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 128 NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE 187
              ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 188 YVLLAMASALQVLYIRKLF 206
            ++L   +  Q+ Y+++ F
Sbjct: 177 ALVLVAMTLGQIYYLKRFF 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing (By similarity). Required for morphogenesis of embryo and placenta.

Mus musculus (taxid: 10090)

>sp|P49020|TMED2_CRIGR Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 70  IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIP 127
           ID  +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P
Sbjct: 52  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 111

Query: 128 NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE 187
              ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E
Sbjct: 112 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 171

Query: 188 YVLLAMASALQVLYIRKLF 206
            ++L   +  Q+ Y+++ F
Sbjct: 172 ALVLVAMTLGQIYYLKRFF 190

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Cricetulus griseus (taxid: 10029)

>sp|Q63524|TMED2_RAT Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 70  IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIP 127
           ID  +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 128 NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE 187
              ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 188 YVLLAMASALQVLYIRKLF 206
            ++L   +  Q+ Y+++ F
Sbjct: 177 ALVLVAMTLGQIYYLKRFF 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Rattus norvegicus (taxid: 10116)

>sp|Q15363|TMED2_HUMAN Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 70  IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIP 127
           ID  +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P
Sbjct: 57  IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAP 116

Query: 128 NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE 187
              ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E
Sbjct: 117 KGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFE 176

Query: 188 YVLLAMASALQVLYIRKLF 206
            ++L   +  Q+ Y+++ F
Sbjct: 177 ALVLVAMTLGQIYYLKRFF 195

Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway but also in post-Golgi membranes. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side. In COPII vesicle-mediated anterograde transport involved in the transport of GPI-anchored proteins and proposed to act togther with TMED10 as their cargo receptor; the function specifically implies SEC24C and SEC24D of the COPII vesicle coat and lipid raft-like microdomains of the ER. Recognizes GPI anchors structural remodeled in the ER by PGAP1 and MPPE1. In COPI vesicle-mediated retrograde transport inhibits the GTPase-activating activity of ARFGAP1 towards ARF1 thus preventing immature uncoating and allowing cargo selection to take place. Involved in trafficking of G protein-coupled receptors (GPCRs). Regulates F2RL1, OPRM1 and P2RY4 exocytic trafficking from the Golgi to the plasma membrane thus contributing to receptor resensitization. Facilitates CASR maturation and stabilization in the early secretory pathway and increases CASR plasma membrane targeting. Proposed to be involved in organization of intracellular membranes such as the maintenance of the Golgi apparatus. May also play a role in the biosynthesis of secreted cargo such as eventual processing.

Homo sapiens (taxid: 9606)

>sp|A7SXK3|TMED_NEMVE Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 75/139 (53%), Gaps = 2/139 (1%)

Query: 70  IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIP 127
           ID  +  P   V+++ +  +  K+ F A   G Y +CF+N  ST  P+ + F + +G  P
Sbjct: 59  IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAP 118

Query: 128 NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE 187
            + +   +   D ++  +++L EA+  V  EQ+Y+  R+  HR  N++T  R++ ++  E
Sbjct: 119 KDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFE 178

Query: 188 YVLLAMASALQVLYIRKLF 206
            ++L   +  QV Y+++ F
Sbjct: 179 SLVLVAMTLGQVYYLKRFF 197

Could have a role in the budding of coatomer-coated and other species of coated vesicles.

Nematostella vectensis (taxid: 45351)

>sp|Q9Y3B3|TMED7_HUMAN Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 34  NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKF 93
           N  +C YE  I +G      F V+      +  H  +D  +  P G V++       D F
Sbjct: 44  NAKQCFYE-DIAQGTKCTLEFQVI------TGGHYDVDCRLEDPDGKVLYKEMKKQYDSF 96

Query: 94  EFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAE 147
            F A ++G YKFCF+N +S  T +TV F   VG      P+E+ ++    ++   V I  
Sbjct: 97  TFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSI-- 154

Query: 148 LREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFS 207
             EAL+SV+  Q + R R+ + R   E    R+  +++GE ++L + S  QV  ++  FS
Sbjct: 155 -HEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 213

Potential role in vesicular protein trafficking, mainly in the early secretory pathway. Appears to play a role in the biosynthesis of secreted cargo including processing and post-translational modifications.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
225432800	215	PREDICTED: transmembrane emp24 domain-co	1.0	1.0	0.823	1e-104
255552039	210	coated vesicle membrane protein, putativ	0.930	0.952	0.86	1e-101
297830996	214	hypothetical protein ARALYDRAFT_479795 [	0.995	1.0	0.818	1e-100
42565125	214	emp24/gp25L/p24 family/GOLD domain-conta	0.995	1.0	0.813	1e-100
224111104	211	predicted protein [Populus trichocarpa]	0.981	1.0	0.795	1e-100
449432664	215	PREDICTED: transmembrane emp24 domain-co	1.0	1.0	0.795	6e-98
388497880	215	unknown [Lotus japonicus]	0.939	0.939	0.806	1e-97
351727807	210	uncharacterized protein LOC100306668 pre	0.939	0.961	0.811	6e-97
351727050	210	uncharacterized protein LOC100499675 pre	0.939	0.961	0.811	1e-96
242032995	213	hypothetical protein SORBIDRAFT_01g00839	0.888	0.896	0.795	2e-89

>gi|225432800|ref|XP_002283487.1| PREDICTED: transmembrane emp24 domain-containing protein A [Vitis vinifera] gi|297737114|emb|CBI26315.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 177/215 (82%), Positives = 197/215 (91%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+R  HR    ++ +AL  S I R+S+LSVTVN+VECVYEYVIYEGDTV+GNFVVVDHD
Sbjct: 1   MERRHTHRCATGFIFIALFFSFIHRISALSVTVNEVECVYEYVIYEGDTVSGNFVVVDHD 60

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW +DHPGIDFTVTSPAGN VHT+KGTSGDKFEFKAPRSGMYKFCF N Y+TPETVSFY
Sbjct: 61  IFWGSDHPGIDFTVTSPAGNTVHTLKGTSGDKFEFKAPRSGMYKFCFQNSYATPETVSFY 120

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIPNEHNLAKDEHLDPINVKIAELREALESV +EQKYL+ARDTRHRHTNESTRKR+
Sbjct: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVTAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+LLA+AS LQV+YIR+LFSKSVAYNRV
Sbjct: 181 IFYTLGEYLLLALASGLQVVYIRRLFSKSVAYNRV 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552039|ref|XP_002517064.1| coated vesicle membrane protein, putative [Ricinus communis] gi|223543699|gb|EEF45227.1| coated vesicle membrane protein, putative [Ricinus communis]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/200 (86%), Positives = 190/200 (95%)

Query: 16  LALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVT 75
           + LLM+LIGR+SSLSVTVNDVECVYEYV+YEGDTV+GNFVVVDHDIFWS+DHPGID TVT
Sbjct: 11  ILLLMNLIGRISSLSVTVNDVECVYEYVLYEGDTVSGNFVVVDHDIFWSSDHPGIDLTVT 70

Query: 76  SPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKD 135
           SPA NVVHTVKGTSGDKFEFKAPRSGMYKFCF+NPYSTPETVSFYIHVGHIPN H+LAKD
Sbjct: 71  SPADNVVHTVKGTSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFYIHVGHIPNAHDLAKD 130

Query: 136 EHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMAS 195
           EHL+PINVKIAELREALESV +EQKYL+ARD RHR TNESTRKR++GYT+GEY+LL + S
Sbjct: 131 EHLNPINVKIAELREALESVTAEQKYLKARDARHRRTNESTRKRVIGYTVGEYILLGLVS 190

Query: 196 ALQVLYIRKLFSKSVAYNRV 215
            LQV+YIR+LFSKSVAYNRV
Sbjct: 191 TLQVVYIRRLFSKSVAYNRV 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830996|ref|XP_002883380.1| hypothetical protein ARALYDRAFT_479795 [Arabidopsis lyrata subsp. lyrata] gi|297329220|gb|EFH59639.1| hypothetical protein ARALYDRAFT_479795 [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/215 (81%), Positives = 196/215 (91%), Gaps = 1/215 (0%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+RQ   +V   + L LL S I ++SSLSVTVND ECV EYV+YEGDTV+GNFVVVDHD
Sbjct: 1   MERRQAKIHVFVLIGLILLNS-INQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 59

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW +DHPG+DFTVTSPAGN+V T+KGTSGDKFEFKAPRSGMYKFCF+NPYSTPETVSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 119

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIPNEH+LAKDEHLDP+NVKIAELREALESVV+EQKYL+ARDTRHRHTNESTRKR+
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+ LA AS LQVLYIRKLFSKSVAYNRV
Sbjct: 180 ILYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565125|ref|NP_188924.3| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana] gi|75273406|sp|Q9LIL4.1|P24B3_ARATH RecName: Full=Transmembrane emp24 domain-containing protein p24beta3; AltName: Full=p24 family protein beta2; Short=p24beta2; AltName: Full=p24 family protein beta3; Short=p24beta3; Flags: Precursor gi|11994713|dbj|BAB03029.1| coated vesicle membrane protein-like [Arabidopsis thaliana] gi|17979492|gb|AAL50082.1| AT3g22845/MWI23_22 [Arabidopsis thaliana] gi|20147305|gb|AAM10366.1| AT3g22845/MWI23_22 [Arabidopsis thaliana] gi|332643162|gb|AEE76683.1| emp24/gp25L/p24 family/GOLD domain-containing protein [Arabidopsis thaliana]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/215 (81%), Positives = 196/215 (91%), Gaps = 1/215 (0%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+RQ   +V   + L LL S I ++SSLSVTVND ECV EYV+YEGDTV+GNFVVVDHD
Sbjct: 1   MERRQAKIHVFVLIGLILLNS-INQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 59

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW +DHPG+DFTVTSPAGN+V T+KGTSGDKFEFKAP+SGMYKFCF+NPYSTPETVSFY
Sbjct: 60  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIPNEH+LAKDEHLDP+NVKIAELREALESVV+EQKYL+ARDTRHRHTNESTRKR+
Sbjct: 120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+ LA AS LQVLYIRKLFSKSVAYNRV
Sbjct: 180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111104|ref|XP_002315749.1| predicted protein [Populus trichocarpa] gi|222864789|gb|EEF01920.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 195/215 (90%), Gaps = 4/215 (1%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+R++  YV    + ALLMS I R+ SLSVTVNDVECVYEYV+YEGDTV+GNFVVVDHD
Sbjct: 1   MERRRKQIYV----VAALLMSFISRIYSLSVTVNDVECVYEYVLYEGDTVSGNFVVVDHD 56

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW +DHPGIDFT TSP  N VHTVKGTSGDKFEFKAPRSGMYKFCF+NPY+TPETVSFY
Sbjct: 57  IFWGSDHPGIDFTATSPGDNTVHTVKGTSGDKFEFKAPRSGMYKFCFHNPYATPETVSFY 116

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIP+EH+LAKDEHL+P+NVKIAELREALESV +EQ+YL+ARD RHRHTNESTR+R+
Sbjct: 117 IHVGHIPSEHDLAKDEHLNPVNVKIAELREALESVTAEQRYLKARDIRHRHTNESTRRRV 176

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+LLA AS LQV+YIR+LFSKSVAYNRV
Sbjct: 177 IAYTVGEYLLLAAASTLQVVYIRRLFSKSVAYNRV 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432664|ref|XP_004134119.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cucumis sativus] gi|449504149|ref|XP_004162266.1| PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cucumis sativus]

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 171/215 (79%), Positives = 196/215 (91%)

Query: 1   MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
           ME+R R + +   +   LL+SLI  + S+SVTVN+VECVYEYV+YEGD+V+GNFVVVDHD
Sbjct: 1   MERRVREKGLGFLLAAFLLLSLIAGIDSISVTVNEVECVYEYVLYEGDSVSGNFVVVDHD 60

Query: 61  IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
           IFW  DHPGI+FTVTSPAGNVVH++K TSGDKFEFKAPRSGMYKFCF+NPYSTPETVSFY
Sbjct: 61  IFWGADHPGIEFTVTSPAGNVVHSLKETSGDKFEFKAPRSGMYKFCFHNPYSTPETVSFY 120

Query: 121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
           IHVGHIPNEH+ AKDEHLDPINVKIAELREALESV+SEQKYL+ARD RHRHTNESTRKR+
Sbjct: 121 IHVGHIPNEHDHAKDEHLDPINVKIAELREALESVISEQKYLKARDARHRHTNESTRKRV 180

Query: 181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
           + YT+GEY+LLA+AS LQV+YIR+LFSKSVAYNRV
Sbjct: 181 IFYTVGEYLLLAVASGLQVIYIRRLFSKSVAYNRV 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497880|gb|AFK37006.1| unknown [Lotus japonicus]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 163/202 (80%), Positives = 187/202 (92%)

Query: 14  MILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFT 73
           +++ L++S + R+ SLSVTV++VEC+YEYV+YEGDTV+GNFVVVDHDIFW +DHPGID T
Sbjct: 14  VLMCLMLSFVARIESLSVTVHEVECIYEYVLYEGDTVSGNFVVVDHDIFWGSDHPGIDLT 73

Query: 74  VTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLA 133
           VTSPAGN VH +KGTSGDKF+FKAP SGMYKFCF+NPYSTPETVSFYIHVGHIPNEHNLA
Sbjct: 74  VTSPAGNTVHDIKGTSGDKFQFKAPASGMYKFCFHNPYSTPETVSFYIHVGHIPNEHNLA 133

Query: 134 KDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAM 193
           KDEHLDPINVKIAELREALESV +EQKYL+ARDTRHRHTNESTR R++ YT+GEY+LLA 
Sbjct: 134 KDEHLDPINVKIAELREALESVTAEQKYLKARDTRHRHTNESTRSRVIFYTVGEYLLLAA 193

Query: 194 ASALQVLYIRKLFSKSVAYNRV 215
            S LQV+YIR+LFSKSVAYNRV
Sbjct: 194 VSTLQVIYIRRLFSKSVAYNRV 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727807|ref|NP_001238453.1| uncharacterized protein LOC100306668 precursor [Glycine max] gi|255629227|gb|ACU14958.1| unknown [Glycine max]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 164/202 (81%), Positives = 186/202 (92%)

Query: 14  MILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFT 73
           +++ L++S   R+ SLSVTVNDVECVYEYV+YEGDTV+GNFVVVDHDIFW++DHPGIDFT
Sbjct: 9   VLMCLMVSFFARIESLSVTVNDVECVYEYVLYEGDTVSGNFVVVDHDIFWNSDHPGIDFT 68

Query: 74  VTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLA 133
           VTS AGN VH +KGTSGDKF FKAP  GMYKFCF+NPYSTPETVSFYIHVGHIP+EH+LA
Sbjct: 69  VTSAAGNTVHNIKGTSGDKFSFKAPTHGMYKFCFHNPYSTPETVSFYIHVGHIPSEHDLA 128

Query: 134 KDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAM 193
           KDEHLDPINVKIAELREALESV +EQKYL+ARD RHRHTNESTRKR++ YT+GEY+LLA 
Sbjct: 129 KDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVVFYTVGEYLLLAA 188

Query: 194 ASALQVLYIRKLFSKSVAYNRV 215
            SALQV+YIR+LFSKSVAYNRV
Sbjct: 189 VSALQVIYIRRLFSKSVAYNRV 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727050|ref|NP_001238171.1| uncharacterized protein LOC100499675 precursor [Glycine max] gi|255625697|gb|ACU13193.1| unknown [Glycine max]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 164/202 (81%), Positives = 185/202 (91%)

Query: 14  MILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFT 73
           + + L +S   R+ SLSVTVNDVECVYEYV+YEGDTV+GNFVVVDHDIFWS+DHPGIDFT
Sbjct: 9   VFMCLTVSFFARIESLSVTVNDVECVYEYVLYEGDTVSGNFVVVDHDIFWSSDHPGIDFT 68

Query: 74  VTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLA 133
           VT+ AGN VH++KGTSGDKF FKAP  GMYKFCF+NPYSTPETVSFYIHVGHIP+EH+LA
Sbjct: 69  VTTAAGNTVHSIKGTSGDKFSFKAPSHGMYKFCFHNPYSTPETVSFYIHVGHIPSEHDLA 128

Query: 134 KDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAM 193
           KDEHLDPINVKIAELREALESV +EQKYL+ARD RHRHTNESTRKR++ YT+GEY+LLA 
Sbjct: 129 KDEHLDPINVKIAELREALESVTAEQKYLKARDARHRHTNESTRKRVVFYTVGEYLLLAA 188

Query: 194 ASALQVLYIRKLFSKSVAYNRV 215
            SALQV+YIR+LFSKSVAYNRV
Sbjct: 189 VSALQVIYIRRLFSKSVAYNRV 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032995|ref|XP_002463892.1| hypothetical protein SORBIDRAFT_01g008390 [Sorghum bicolor] gi|241917746|gb|EER90890.1| hypothetical protein SORBIDRAFT_01g008390 [Sorghum bicolor]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 152/191 (79%), Positives = 170/191 (89%)

Query: 25  RLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHT 84
           R  +LSVTV D EC++E+V YEGDTV+GNFVVVDHDIFWS+DHPGID TVTSP GN VHT
Sbjct: 23  RADALSVTVTDTECIHEFVPYEGDTVSGNFVVVDHDIFWSSDHPGIDLTVTSPGGNTVHT 82

Query: 85  VKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHNLAKDEHLDPINVK 144
           +KG SGDKFEFKAPR GMYKFCF+NPY  PETVSFYIHVGHIPNEHNLAKDEHLDPINVK
Sbjct: 83  LKGKSGDKFEFKAPRGGMYKFCFHNPYGAPETVSFYIHVGHIPNEHNLAKDEHLDPINVK 142

Query: 145 IAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRK 204
           IAEL+EALESV +EQKYL+AR+ RHRHTNESTRKR++ YT+ EY+    ASALQVLYIR+
Sbjct: 143 IAELKEALESVTAEQKYLKAREARHRHTNESTRKRVMFYTMAEYIAFMAASALQVLYIRR 202

Query: 205 LFSKSVAYNRV 215
           LFSK+V YNRV
Sbjct: 203 LFSKNVGYNRV 213

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2094364	214	AT3G22845 [Arabidopsis thalian	0.995	1.0	0.813	3.4e-93
TAIR|locus:2091107	208	p24beta2 "p24 subfamily beta 2	0.944	0.975	0.333	1.7e-27
DICTYBASE|DDB_G0288053	205	empA "emp24/gp25L/p24 family p	0.855	0.897	0.323	3.1e-19
FB|FBgn0029709	208	CHOp24 "CHOp24" [Drosophila me	0.790	0.817	0.342	8.3e-19
UNIPROTKB|Q15363	201	TMED2 "Transmembrane emp24 dom	0.860	0.920	0.285	7.5e-18
UNIPROTKB|P49020	196	TMED2 "Transmembrane emp24 dom	0.860	0.943	0.285	9.5e-18
UNIPROTKB|C3V9V7	201	TMED2 "RNP24" [Bos taurus (tax	0.860	0.920	0.285	1.2e-17
UNIPROTKB|E2RGZ5	201	TMED2 "Uncharacterized protein	0.860	0.920	0.285	1.2e-17
UNIPROTKB|F2Z501	201	TMED2 "Uncharacterized protein	0.860	0.920	0.285	1.2e-17
RGD|69243	201	Tmed2 "transmembrane emp24 dom	0.860	0.920	0.285	1.2e-17

TAIR|locus:2094364 AT3G22845 [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 175/215 (81%), Positives = 196/215 (91%)

Query:     1 MEKRQRHRYVATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHD 60
             ME+RQ   +V   + L LL S I ++SSLSVTVND ECV EYV+YEGDTV+GNFVVVDHD
Sbjct:     1 MERRQAKIHVFVLIGLILLNS-INQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 59

Query:    61 IFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFY 120
             IFW +DHPG+DFTVTSPAGN+V T+KGTSGDKFEFKAP+SGMYKFCF+NPYSTPETVSFY
Sbjct:    60 IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 119

Query:   121 IHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRL 180
             IHVGHIPNEH+LAKDEHLDP+NVKIAELREALESVV+EQKYL+ARDTRHRHTNESTRKR+
Sbjct:   120 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 179

Query:   181 LGYTIGEYVLLAMASALQVLYIRKLFSKSVAYNRV 215
             + YT+GEY+ LA AS LQVLYIRKLFSKSVAYNRV
Sbjct:   180 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2091107 p24beta2 "p24 subfamily beta 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 68/204 (33%), Positives = 104/204 (50%)

Query:    12 TYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGID 71
             T ++L LL S    L  +   ++  EC      YEGDT+  +FVV+  D  W  +  G+D
Sbjct:     6 TIVLLGLLWSFQATLG-IRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVD 64

Query:    72 FTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTPETVSFYIHVGHIPNEHN 131
               +  P G  +H  +     K +F   + G+Y+FCF N     ET+ F + +GH      
Sbjct:    65 LVIHGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQ 124

Query:   132 LAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLL 191
              AKDEH  P+  +I++L EAL ++  EQ +L A+  R    NE+  KR +   + E   L
Sbjct:   125 HAKDEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFAL 184

Query:   192 AMASALQVLYIRKLFSKSVAYNRV 215
               AS LQV  +R+LF + +  +RV
Sbjct:   185 IGASFLQVYLLRRLFERKLGMSRV 208

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030134 "ER to Golgi transport vesicle" evidence=IDA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0288053 empA "emp24/gp25L/p24 family protein A" [Dictyostelium discoideum (taxid:44689)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 63/195 (32%), Positives = 102/195 (52%)

Query:    15 ILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTV 74
             +L +  + I    S  V+    EC+YE +  +    A  F V+        D   IDFT+
Sbjct:    13 LLCIASNSIVESFSFKVSAKVEECIYEEIGVDLSFTA-MFQVIQGGF---ND---IDFTI 65

Query:    75 TSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNL 132
              SP   +V++ +  S      ++  +G+Y FCF+N  S  T +TVSF + VG       +
Sbjct:    66 ISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREI 125

Query:   133 AKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGE-YVLL 191
             AK + L PI   I  L + + +V +EQ Y + R+  HR+T EST  R+L +++ E +VL+
Sbjct:   126 AKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLI 185

Query:   192 AMASALQVLYIRKLF 206
             A+ S  Q+ Y+R+ F
Sbjct:   186 AL-SIWQIYYLRRFF 199

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0029709 CHOp24 "CHOp24" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 63/184 (34%), Positives = 94/184 (51%)

Query:    29 LSVTVNDVECVYEYVIYEGDTVAG-NFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKG 87
             +SV  ++ EC +E V  EG T  G  F V+D       D   +D  ++ P  +V+H  + 
Sbjct:    27 VSVDAHNEECFFENV--EGGTKFGVTFEVIDGGFL---D---VDIKISGPDNHVMHESEK 78

Query:    88 TSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAK-DEHLDPINVK 144
              S  K+ F AP  G Y  CFNN  S  TP+ V F I VG  P     A  +E +    ++
Sbjct:    79 ESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLE 138

Query:   145 --IAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYI 202
               I EL   L SV  EQ+Y+  RD  HR  NE+T  R++ ++  E ++L + +  QV Y+
Sbjct:   139 DMIRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYL 198

Query:   203 RKLF 206
             ++ F
Sbjct:   199 KRFF 202

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035220 "wing disc development" evidence=IMP

GO:0070863 "positive regulation of protein exit from endoplasmic reticulum" evidence=IMP

GO:0061357 "positive regulation of Wnt protein secretion" evidence=IMP

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

UNIPROTKB|Q15363 TMED2 "Transmembrane emp24 domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 56/196 (28%), Positives = 96/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+  +S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 59

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   180 LVAMTLGQIYYLKRFF 195

GO:0001843 "neural tube closure" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0035459 "cargo loading into vesicle" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0042589 "zymogen granule membrane" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P49020 TMED2 "Transmembrane emp24 domain-containing protein 2" [Cricetulus griseus (taxid:10029)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 54

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    55 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 114

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   115 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 174

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   175 LVAMTLGQIYYLKRFF 190

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0007030 "Golgi organization" evidence=ISS

GO:0030137 "COPI-coated vesicle" evidence=IDA

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0072661 "protein targeting to plasma membrane" evidence=ISS

UNIPROTKB|C3V9V7 TMED2 "RNP24" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 59

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   180 LVAMTLGQIYYLKRFF 195

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2RGZ5 TMED2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 59

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   180 LVAMTLGQIYYLKRFF 195

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F2Z501 TMED2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 59

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   180 LVAMTLGQIYYLKRFF 195

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001892 "embryonic placenta development" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|69243 Tmed2 "transmembrane emp24 domain trafficking protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 56/196 (28%), Positives = 95/196 (48%)

Query:    15 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDF 72
             +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID 
Sbjct:     7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDV 59

Query:    73 TVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEH 130
              +T P    ++     S  K+ F A   G YKFCF+N  ST  P+ V F I +G  P   
Sbjct:    60 EITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 119

Query:   131 NLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVL 190
             ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++
Sbjct:   120 DMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179

Query:   191 LAMASALQVLYIRKLF 206
             L   +  Q+ Y+++ F
Sbjct:   180 LVAMTLGQIYYLKRFF 195

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001843 "neural tube closure" evidence=IEA;ISO

GO:0001892 "embryonic placenta development" evidence=IEA;ISO

GO:0001893 "maternal placenta development" evidence=IEA

GO:0001947 "heart looping" evidence=IEA;ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO;ISS

GO:0005794 "Golgi apparatus" evidence=ISO;ISS

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO;NAS

GO:0006903 "vesicle targeting" evidence=NAS

GO:0007030 "Golgi organization" evidence=ISO;ISS

GO:0010628 "positive regulation of gene expression" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;IDA

GO:0030137 "COPI-coated vesicle" evidence=ISS;IDA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0032525 "somite rostral/caudal axis specification" evidence=IEA;ISO

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=ISO;ISS

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0036342 "post-anal tail morphogenesis" evidence=IEA;ISO

GO:0042589 "zymogen granule membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LIL4	P24B3_ARATH	No assigned EC number	0.8139	0.9953	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam01105	178	pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOL	5e-47

>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD

 Score =  152 bits (386), Expect = 5e-47
 Identities = 71/179 (39%), Positives = 101/179 (56%), Gaps = 14/179 (7%)

Query: 34  NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGN---VVHTVKGTSG 90
            + EC YE  + +G  V G++ V+         +  IDFT+T P GN   +       SG
Sbjct: 9   GEKECFYEE-VPKGTLVTGSYQVISGG------NLDIDFTITDPDGNGNVIYSKEDRKSG 61

Query: 91  DKFEFKAPRSGMYKFCFNNPYSTPE--TVSFYIHVGHIPNEHNLAKDEHLDPINVKIAEL 148
            KF F A  SG YKFCF+N +ST    TVSF I VG    +  +AK E LDP+  ++ +L
Sbjct: 62  GKFSFTATESGEYKFCFSNSFSTFSSKTVSFDIKVGEEAKD--IAKKEKLDPLEEELKKL 119

Query: 149 REALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFS 207
            + L  +  EQKYLR R+ RHR TNEST  R++ ++I + ++L   S LQV Y+++ F 
Sbjct: 120 EDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFFE 178

Members of this family are implicated in bringing cargo forward from the ER and binding to coat proteins by their cytoplasmic domains. This domain corresponds closely to the beta-strand rich GOLD domain described in. The GOLD domain is always found combined with lipid- or membrane-association domains. Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG1692	201	consensus Putative cargo transport protein EMP24 (	100.0
KOG1690	215	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1691	210	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG1693	209	consensus emp24/gp25L/p24 family of membrane traff	100.0
KOG3287	236	consensus Membrane trafficking protein, emp24/gp25	100.0
PF01105	183	EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro	100.0
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	95.45
smart00557	93	IG_FLMN Filamin-type immunoglobulin domains. These	91.68
PF04151	70	PPC: Bacterial pre-peptidase C-terminal domain; In	88.79
PF00630	101	Filamin: Filamin/ABP280 repeat; InterPro: IPR01786	88.53
PF13897	136	GOLD_2: Golgi-dynamics membrane-trafficking	85.88
PF11589	106	DUF3244: Domain of unknown function (DUF3244); Int	82.86
PF05738	70	Cna_B: Cna protein B-type domain; InterPro: IPR008	80.08

>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-49  Score=301.70  Aligned_cols=195  Identities=39%  Similarity=0.659  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHHHhhcceEEEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeec
Q 028009           10 VATYMILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTS   89 (215)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~   89 (215)
                      +...++|+++|++...+.++++++.++|||+|++.+ |+.+.++|+|.+|+      ..++++.|++|+|+++++..+.+
T Consensus         4 ~~~~~vll~~L~~~~~~~~is~~ah~eeCf~e~~~~-gd~~~vsF~v~~gg------~~~vd~~I~gP~~~~i~~~~~~s   76 (201)
T KOG1692|consen    4 LASVIVLLGLLFISAAGYGISLDAHEEECFFENLEE-GDKLSVSFEVIDGG------FLGVDVEITGPDGKIIHKGKRES   76 (201)
T ss_pred             hhhHHHHHHHHHHHhhheeEEEccchhhhHhhhhcc-CCEEEEEEEEecCC------ccceeEEEECCCCchhhhccccc
Confidence            566788888888888899999999999999999995 99999999999976      67999999999999999998889


Q ss_pred             CCEEEEEcCCCceeeEEEEcCCC--CCeEEEEEEEEccCCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028009           90 GDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDT  167 (215)
Q Consensus        90 ~g~f~f~~~~~G~y~iCf~n~~~--~~~~V~f~i~~~~~~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~  167 (215)
                      .|+|+|+++.+|.|++||+|..+  .||.|.|++++|..+++++.+++++.+++++.+++|.+.+..++.||+|+..|+.
T Consensus        77 sgk~tF~a~~~G~Y~fCF~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer  156 (201)
T KOG1692|consen   77 SGKYTFTAPKKGTYTFCFSNKMSTMTPKTVMFTIHVGHAPQRDDLAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARER  156 (201)
T ss_pred             CceEEEEecCCceEEEEecCCCCCCCceEEEEEEEEeeccccchhcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999  5999999999998877777888899999999999999999999999999999999


Q ss_pred             HhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 028009          168 RHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA  211 (215)
Q Consensus       168 ~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~  211 (215)
                      .||.++|+|++||.|||++|.++||+++++|||||||||++|+.
T Consensus       157 ~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvkrv  200 (201)
T KOG1692|consen  157 IHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV  200 (201)
T ss_pred             HHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence            99999999999999999999999999999999999999999874

>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-42  Score=263.66  Aligned_cols=195  Identities=24%  Similarity=0.350  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCcc---cc-CCCCCCeeEEEEcCCCC--eEee
Q 028009           13 YMILALLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDI---FW-STDHPGIDFTVTSPAGN--VVHT   84 (215)
Q Consensus        13 ~~~~~~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~---~~-~~~~~~i~~~I~~p~g~--~l~~   84 (215)
                      +..++||++++..+.|++|+++  +++||++++|+ ++.+.|+|.+.-.+.   .| ...+.++.+.|.+|.++  ++++
T Consensus         5 ~~~~lll~~l~~~~~a~yFy~~~~e~KCF~eelpk-~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~   83 (215)
T KOG1690|consen    5 MRLLLLLLLLATQVQALYFYIAGTEKKCFIEELPK-GTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLS   83 (215)
T ss_pred             HHHHHHHHHHHhhccEEEEEecCCcccchhhhCCC-CcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEe
Confidence            5678888899999999999995  67899999996 999999999864332   12 12356889999999665  9999


Q ss_pred             eeeecCCEEEEEcCCCceeeEEEEcCCCC-----CeEEEEEEEEccCC-CCCcccccCCCchHHHHHHHHHHHHHHHHHH
Q 028009           85 VKGTSGDKFEFKAPRSGMYKFCFNNPYST-----PETVSFYIHVGHIP-NEHNLAKDEHLDPINVKIAELREALESVVSE  158 (215)
Q Consensus        85 ~~~~~~g~f~f~~~~~G~y~iCf~n~~~~-----~~~V~f~i~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~  158 (215)
                      +.+.++|+|+|++.++|+|+||+.+..+.     ..+|.+++++|.+. ++.  ..+++.+.++.++..|++++..|..|
T Consensus        84 q~~ss~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a~l~a--~~ke~~k~l~~Rv~~L~~~~~~IrkE  161 (215)
T KOG1690|consen   84 QQYSSEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHANLDA--QIKETDKLLEGRVRQLNSRLESIRKE  161 (215)
T ss_pred             ecCCCCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchhhhhh--hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888762     46999999999774 222  23466778888999999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 028009          159 QKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSV  210 (215)
Q Consensus       159 q~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk  210 (215)
                      |+++|.||+++|++.||+|+|++|||++|+++|+++|+||+.+||+||.++|
T Consensus       162 Q~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqK  213 (215)
T KOG1690|consen  162 QNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQK  213 (215)
T ss_pred             HHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999987

>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=264.08  Aligned_cols=198  Identities=28%  Similarity=0.482  Sum_probs=178.1

Q ss_pred             hHHHHH-HHHHHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeee
Q 028009            9 YVATYM-ILALLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTV   85 (215)
Q Consensus         9 ~~~~~~-~~~~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~   85 (215)
                      ++++.. .++++++++..+.|+.|+++  .+.|+.|++.+ |..+.|.|.+.+....   ..+.+++.|+||.|+.+++.
T Consensus         2 ~~~~~~~~l~i~~~~~~~~~a~~f~v~~~~~kCi~EeI~~-n~lv~g~y~i~~~~~~---~~~~~~~~Vts~~G~~~~~~   77 (210)
T KOG1691|consen    2 MMPCLSLLLLIFLLLLPLVHALRFDVPSKTTKCISEEIHE-NVLVVGDYEIINPNGD---HSHKLSVKVTSPYGNNLHSK   77 (210)
T ss_pred             ccHhHHHHHHHHHHHhhhhheEEEEecCCCCEeehhhhcc-CeEEEEEEEEecCCCC---ccceEEEEEEcCCCceeehh
Confidence            344444 44456688999999999995  68999999996 9999999999876521   12579999999999999999


Q ss_pred             eeecCCEEEEEcCCCceeeEEEEcC--CCC---CeEEEEEEEEccC-CCCCcccccCCCchHHHHHHHHHHHHHHHHHHH
Q 028009           86 KGTSGDKFEFKAPRSGMYKFCFNNP--YST---PETVSFYIHVGHI-PNEHNLAKDEHLDPINVKIAELREALESVVSEQ  159 (215)
Q Consensus        86 ~~~~~g~f~f~~~~~G~y~iCf~n~--~~~---~~~V~f~i~~~~~-~~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q  159 (215)
                      ++..+|+|+|++.+.|.|.+||.|.  ...   ...|+|++..|.+ +||+++|++++++|+|.++++|++.+..|.++.
T Consensus        78 env~~gqFaFta~e~~~y~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~  157 (210)
T KOG1691|consen   78 ENVTKGQFAFTAEESGMYEACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEM  157 (210)
T ss_pred             hccccceEEEEeccCCcEEEEEecccCCCCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999993  333   3689999999987 589999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 028009          160 KYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSV  210 (215)
Q Consensus       160 ~~~~~re~~~~~~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk  210 (215)
                      -|++.||+++|+++|+||+||.|+|++.++++++++.||++|||+||++||
T Consensus       158 ~YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK  208 (210)
T KOG1691|consen  158 YYLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK  208 (210)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999997

>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-41  Score=257.64  Aligned_cols=190  Identities=31%  Similarity=0.482  Sum_probs=168.3

Q ss_pred             HHHHHhhcceEEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEE
Q 028009           18 LLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEF   95 (215)
Q Consensus        18 ~~~~~~~~~~~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f   95 (215)
                      +++++++.+..|+|+++  .++|||+++++.++.+++.|+|+.||      +.+|++.|.+|+|+++++..++..++|.|
T Consensus        13 lla~~~s~a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG------~fDVD~~I~aPdgkvI~~~~kk~~~~~~f   86 (209)
T KOG1693|consen   13 LLALLFSEASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGG------HFDVDYDIEAPDGKVIYSEKKKRYDSFLF   86 (209)
T ss_pred             HHHHHhhhcccEEEEcCCcchhheeeecccCCceEEEEEEEEeCC------ceeeEEEEECCCCCEEeeccccccccEEE
Confidence            34455566889999995  78999999997555599999999997      67999999999999999999999999999


Q ss_pred             EcCCCceeeEEEEcCCCC--CeEEEEEEEEccCCCCCcc--cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 028009           96 KAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEHNL--AKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRH  171 (215)
Q Consensus        96 ~~~~~G~y~iCf~n~~~~--~~~V~f~i~~~~~~~~~~~--a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~  171 (215)
                      ++...|+|++||+|..++  .|.|.+++++|.+.+....  +.+...+.++..+..+.+.|+.|.+.|.|+|.||.+.+.
T Consensus        87 ~ae~~G~Y~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~  166 (209)
T KOG1693|consen   87 KAEGKGEYTFCFSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRS  166 (209)
T ss_pred             EEecceEEEEEecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999985  7999999999976433222  223456788999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 028009          172 TNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVAYN  213 (215)
Q Consensus       172 ~~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~~~  213 (215)
                      +++|+++||+|||++++++++++++.|++.||.||+.|+..+
T Consensus       167 tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~~  208 (209)
T KOG1693|consen  167 TVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRKRY  208 (209)
T ss_pred             chhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence            999999999999999999999999999999999999887643

>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-35  Score=230.39  Aligned_cols=177  Identities=27%  Similarity=0.458  Sum_probs=154.4

Q ss_pred             EEEEe--CCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEE
Q 028009           29 LSVTV--NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFC  106 (215)
Q Consensus        29 l~f~l--~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iC  106 (215)
                      +++.+  |+++|||+.++. +..+.++|+|.+|.     ++.+|++++.+|.|.++.+.+.+..|.+.+.+.++|.|++|
T Consensus        36 ftv~ipAGk~eCf~Q~v~~-~~tle~eyQVi~G~-----GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C  109 (236)
T KOG3287|consen   36 FTVMIPAGKTECFYQPVPQ-GATLEVEYQVIDGA-----GDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC  109 (236)
T ss_pred             eEEEecCCCceeeeeeccC-CeEEEEEEEEEecC-----CccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence            45555  589999999995 89999999999982     36899999999999999998889999999999999999999


Q ss_pred             EEcCCCC--CeEEEEEEEEccCC-------CCCcccc-----cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 028009          107 FNNPYST--PETVSFYIHVGHIP-------NEHNLAK-----DEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHT  172 (215)
Q Consensus       107 f~n~~~~--~~~V~f~i~~~~~~-------~~~~~a~-----~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~  172 (215)
                      |+|++|.  .|.|.|++-+..+.       .|.+.++     ..+++++++.++.+.+++..+...|..+|.||.++|.+
T Consensus       110 fDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L  189 (236)
T KOG3287|consen  110 FDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNL  189 (236)
T ss_pred             EcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            9999995  89999998554321       1222111     23567889999999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 028009          173 NESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSKSVA  211 (215)
Q Consensus       173 ~es~~~rv~~~sii~i~vli~~~~~Qv~~lk~fF~~Kk~  211 (215)
                      .+|+..||.|||.+|++++|+++..|+|+||++|+.|+.
T Consensus       190 ~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~  228 (236)
T KOG3287|consen  190 QESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSK  228 (236)
T ss_pred             HhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCC
Confidence            999999999999999999999999999999999998853

>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins

Probab=100.00  E-value=2.9e-37  Score=241.82  Aligned_cols=174  Identities=40%  Similarity=0.700  Sum_probs=5.5

Q ss_pred             EEEEEeC--CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEE--cCCCCeEeeeeee-cCCEEEEEcCCCce
Q 028009           28 SLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVT--SPAGNVVHTVKGT-SGDKFEFKAPRSGM  102 (215)
Q Consensus        28 ~l~f~l~--~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~--~p~g~~l~~~~~~-~~g~f~f~~~~~G~  102 (215)
                      |++|.++  +++||++++++ ++.+.|+|.+.+++     ...++++.|+  +|+|+.++...+. .+|.|+|+++++|+
T Consensus         1 a~~f~l~~g~~~Cf~e~v~~-~~~i~~~y~v~~~~-----~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~   74 (183)
T PF01105_consen    1 ALTFELEPGETECFYEEVPK-GTTIRGSYRVTDGG-----GAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGE   74 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEECCCCcEEEEEEcCC-CcEEEEEEEEeecc-----ccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCC
Confidence            5778884  78999999996 99999999998765     2468999999  5666888888655 45799999999999


Q ss_pred             eeEEEEcCCCC--C-eEEEEEEEEccCC-CCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 028009          103 YKFCFNNPYST--P-ETVSFYIHVGHIP-NEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRK  178 (215)
Q Consensus       103 y~iCf~n~~~~--~-~~V~f~i~~~~~~-~~~~~a~~~~~~~l~~~l~~l~~~l~~i~~~q~~~~~re~~~~~~~es~~~  178 (215)
                      |++||+|+.+.  + +.|+|+++++.+. ++++.++++++++++..|++|.+.++.|.++|+|++.|+.+|++++++++.
T Consensus        75 y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~  154 (183)
T PF01105_consen   75 YQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNS  154 (183)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999986  4 8999999998653 567788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 028009          179 RLLGYTIGEYVLLAMASALQVLYIRKLFS  207 (215)
Q Consensus       179 rv~~~sii~i~vli~~~~~Qv~~lk~fF~  207 (215)
                      ||+||+++++++++++++||+++||+||+
T Consensus       155 ~i~~~si~~~~vli~~~~~Qv~~lk~~f~  183 (183)
T PF01105_consen  155 RIMWWSIIQIVVLILVSVWQVYYLKKFFK  183 (183)
T ss_dssp             -----------------------HHHHHH
T ss_pred             eEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999996

It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=95.45  E-value=0.37  Score=33.46  Aligned_cols=67  Identities=22%  Similarity=0.267  Sum_probs=43.5

Q ss_pred             CCcEEEEEEEEEeCcc-ccCCCCCCeeEEEEcCCCCeEeeeee---ecCCEEEE--Ec---CCCceeeEEEEcCCC
Q 028009           46 EGDTVAGNFVVVDHDI-FWSTDHPGIDFTVTSPAGNVVHTVKG---TSGDKFEF--KA---PRSGMYKFCFNNPYS  112 (215)
Q Consensus        46 ~~~~i~~~y~v~~~~~-~~~~~~~~i~~~I~~p~g~~l~~~~~---~~~g~f~f--~~---~~~G~y~iCf~n~~~  112 (215)
                      +|+.+.+.--+.+.+. ...+.+..+.+.|.||+|+.+.++..   ...|.+++  ..   ...|.|++=+.....
T Consensus        13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~   88 (99)
T PF01835_consen   13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD   88 (99)
T ss_dssp             TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred             CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence            6888877766655441 11223568999999999999988765   24565444  33   236899998888544

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>smart00557 IG_FLMN Filamin-type immunoglobulin domains

Probab=91.68  E-value=1.8  Score=29.76  Aligned_cols=45  Identities=18%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|+.+.-. .+...|  ..+|++...|.|.+.+.-..
T Consensus        31 ~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g   78 (93)
T smart00557       31 GGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG   78 (93)
T ss_pred             CCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            4679999999999755433 334456  56778899999999886554

These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).

>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=88.79  E-value=2.2  Score=27.53  Aligned_cols=61  Identities=21%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             ceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeeec--C---CEEEEEcCCCceeeEEE
Q 028009           37 ECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTS--G---DKFEFKAPRSGMYKFCF  107 (215)
Q Consensus        37 eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~~--~---g~f~f~~~~~G~y~iCf  107 (215)
                      ..|...+++ +..+.+.  +...       ..+.++.+.+++|..+.......  .   ....|+++.+|+|.+=+
T Consensus         3 D~y~f~v~a-g~~l~i~--l~~~-------~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V   68 (70)
T PF04151_consen    3 DYYSFTVPA-GGTLTID--LSGG-------SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV   68 (70)
T ss_dssp             EEEEEEEST-TEEEEEE--ECET-------TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred             EEEEEEEcC-CCEEEEE--EcCC-------CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence            467788885 7777654  3222       23788999999987766533222  2   35778889999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....

>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod

Probab=88.53  E-value=4  Score=28.03  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CCeeEEEEcCCCC----eE-eeeeeecCC--EEEEEcCCCceeeEEEEcC
Q 028009           68 PGIDFTVTSPAGN----VV-HTVKGTSGD--KFEFKAPRSGMYKFCFNNP  110 (215)
Q Consensus        68 ~~i~~~I~~p~g~----~l-~~~~~~~~g--~f~f~~~~~G~y~iCf~n~  110 (215)
                      ..+.+.|.+|++.    .+ ..-.+...|  ..+|+++..|.|++++.-.
T Consensus        42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~   91 (101)
T PF00630_consen   42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN   91 (101)
T ss_dssp             SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred             ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence            4678999999886    33 233344566  5677889999999988643

Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....

>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking

Probab=85.88  E-value=1.4  Score=32.66  Aligned_cols=27  Identities=26%  Similarity=0.604  Sum_probs=21.9

Q ss_pred             EEcCCCceeeEEEEcCCCC--CeEEEEEE
Q 028009           95 FKAPRSGMYKFCFNNPYST--PETVSFYI  121 (215)
Q Consensus        95 f~~~~~G~y~iCf~n~~~~--~~~V~f~i  121 (215)
                      ++.+..|.|-++|+|+.|-  .|++.+.+
T Consensus       105 ~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V  133 (136)
T PF13897_consen  105 HTCPGPGVYVLKFDNSYSWFRSKKLYYRV  133 (136)
T ss_pred             EECCCCeEEEEEeeCcceeEEeeEEEEEE
Confidence            4558999999999999984  67777654

>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes

Probab=82.86  E-value=6.8  Score=27.63  Aligned_cols=46  Identities=22%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeec--CCEEEE--EcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTS--GDKFEF--KAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~--~g~f~f--~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.++|.|.+|+++|+..-..  .....+  ....+|.|.+=+.+...
T Consensus        47 ~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g   96 (106)
T PF11589_consen   47 IGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG   96 (106)
T ss_dssp             -SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred             CCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence            35699999999999999875322  333444  45679999999998876

The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.

>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains

Probab=80.08  E-value=4.2  Score=25.98  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=35.8

Q ss_pred             CeeEEEEcCCCCeEee--eeeecCCEEEEEcCCCceeeEEEEcCCC
Q 028009           69 GIDFTVTSPAGNVVHT--VKGTSGDKFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        69 ~i~~~I~~p~g~~l~~--~~~~~~g~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ++.|.|++.++.....  ..-...|.+.|.-...|.|.+=......
T Consensus         3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~   48 (70)
T PF05738_consen    3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD   48 (70)
T ss_dssp             TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred             CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence            5789999988887775  4456789999998899999999887544

The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	95.81
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	94.33
2ee9_A	95	Filamin-B; beta-sandwich, immunoglobulin-like fold	92.06
2d7n_A	93	Filamin-C; beta-sandwich, immunoglobulin-like fold	91.95
2d7m_A	115	Filamin-C; beta-sandwich, immunoglobulin-like fold	89.59
2dmb_A	124	Filamin-B; beta-sandwich, immunoglobulin-like fold	89.54
3cnk_A	89	Filamin-A; FLNA24, X-RAY crystalography, homodimer	89.13
3rgh_A	100	Filamin-A; cell adhesion, cytoskeleton-complex, di	88.96
2dj4_A	108	Filamin-B; beta-sandwich, immunoglobulin-like fold	88.06
2d7p_A	112	Filamin-C; beta-sandwich, immunoglobulin-like fold	88.0
2ee6_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.9
2dlg_A	102	Filamin-B; beta-sandwich, immunoglobulin-like fold	87.37
4dzg_A	114	PLIG; lysozyme inhibitor, G-type lysozyme binding,	87.05
2eea_A	115	Filamin-B; beta-sandwich, immunoglobulin-like fold	85.63
1v05_A	96	Filamin C; actin-binding protein, immunoglobulin;	85.54
2bp3_A	97	Filamin A; structural protein, cytoskeleton/comple	84.66
2e9j_A	119	Filamin-B; beta-sandwich, immunoglobulin-like fold	84.48
2dia_A	113	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.76
2w0p_A	94	Filamin-A; alternative splicing, cytoskeleton/comp	83.52
2dic_A	105	Filamin-B; beta-sandwich, immunoglobulin-like fold	83.0
2dmc_A	116	Filamin-B; beta-sandwich, immunoglobulin-like fold	82.85
2k9u_A	119	Gamma filamin; cytoskeletal complex, alternative s	82.2
2nqc_A	138	Filamin-C; immunoglobulin, metal binding, immune s	80.89

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=95.81  E-value=0.13  Score=43.84  Aligned_cols=88  Identities=17%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             EEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcC-----C---C--CeEeeeeeecC----CEEE
Q 028009           29 LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSP-----A---G--NVVHTVKGTSG----DKFE   94 (215)
Q Consensus        29 l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p-----~---g--~~l~~~~~~~~----g~f~   94 (215)
                      +++..|+....-..+..+|+.|...|.+.         +.+|.|.|.-.     +   |  ..+........    ..=+
T Consensus       282 ~~V~~g~~~~v~~~v~~~g~~l~W~f~~~---------~~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r~~~~~~~~~G~  352 (403)
T 1olm_A          282 VQISRGSSHQVEYEILFPGCVLRWQFMSD---------GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGT  352 (403)
T ss_dssp             EEECTTCEEEEEEEECSTTCEEEEEEEES---------SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEE
T ss_pred             EEEcCCCEEEEEEEEcCCCCEEEEEEEec---------CCcEEEEEEEecccccccCCCcceEEeeeeeecCccccccCE
Confidence            33333566666667765688888888873         23688877621     1   1  12332221111    1345


Q ss_pred             EEcCCCceeeEEEEcCCC--CCeEEEEEEEEcc
Q 028009           95 FKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH  125 (215)
Q Consensus        95 f~~~~~G~y~iCf~n~~~--~~~~V~f~i~~~~  125 (215)
                      +.++++|.|.++|+|+.|  ..|+|.+.+.+..
T Consensus       353 ~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~  385 (403)
T 1olm_A          353 LTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  385 (403)
T ss_dssp             EECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             EEcCCCeEEEEEEeccccceeceEEEEEEEEeC
Confidence            778999999999999998  4799999888863

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=94.33  E-value=0.76  Score=31.07  Aligned_cols=65  Identities=22%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             CCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCeEeeeeee--cCCEE--EEEc---CCCceeeEEEEcCC
Q 028009           46 EGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGT--SGDKF--EFKA---PRSGMYKFCFNNPY  111 (215)
Q Consensus        46 ~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~l~~~~~~--~~g~f--~f~~---~~~G~y~iCf~n~~  111 (215)
                      +|+.+.+..-+.+.+.. +.....+.+.|.||+|+.+.++...  ..|.+  +|..   ...|.|++......
T Consensus        15 PGetV~~~~~~~~~~~~-p~~~~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~   86 (102)
T 2p9r_A           15 PGQTVKFRVVSMDENFH-PLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKS   86 (102)
T ss_dssp             TTCEEEEEEEEECGGGC-BCCCEEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTT
T ss_pred             CCCEEEEEEEEECCCCc-CCCCCceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECC
Confidence            68888877776654421 1122336899999999998875332  35644  4443   35799999998754

>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.06  E-value=0.43  Score=32.36  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.+.|.+|+|+.+.-. .+...|  ...|++.+.|.|.+++.-...
T Consensus        29 ~~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~G~   77 (95)
T 2ee9_A           29 KGEITGEVHMPSGKTATPEIVDNKDGTVTVRYAPTEVGLHEMHIKYMGS   77 (95)
T ss_dssp             TTSEEEEEECTTSCEECCEEEECSSSCEEEECCCCSSEEEEEEEEESSC
T ss_pred             CCCEEEEEECCCCCccccEEEeCCCCeEEEEEEecCCEeEEEEEEECCE
Confidence            5689999999999865432 233445  567789999999999975553

>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=91.95  E-value=0.52  Score=31.74  Aligned_cols=46  Identities=9%  Similarity=0.178  Sum_probs=34.1

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.+.|.+|+|+.+.-. .+...|  ...|++++.|.|.+++.-...
T Consensus        21 ~~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~ytP~e~G~h~v~V~~~g~   69 (93)
T 2d7n_A           21 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGN   69 (93)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESSS
T ss_pred             CCCEEEEEECCCCCccceEEEECCCCEEEEEEEccCCEEEEEEEEECCE
Confidence            4579999999999865432 233445  677889999999999975553

>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.59  E-value=1.3  Score=30.64  Aligned_cols=46  Identities=11%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ...+.+.|.+|+|..+... .+...|  ..+|++.+.|.|.+.+.-...
T Consensus        43 ~~~l~V~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g~   91 (115)
T 2d7m_A           43 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGD   91 (115)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESSC
T ss_pred             CCEEEEEEECCCCCeeeeEEEECCCCEEEEEEEeCCCceEEEEEEECCE
Confidence            4579999999998754332 233455  567889999999999875553

>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=89.54  E-value=1.5  Score=30.97  Aligned_cols=46  Identities=15%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ...|++++.|.|.+++.-...
T Consensus        42 ~~~l~V~I~~p~g~~v~~~v~d~~dGty~V~Y~p~~~G~y~I~V~~~g~   90 (124)
T 2dmb_A           42 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   90 (124)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCcEEEEEECCCCCEEeeEEEeCCCCEEEEEEEcCCCEEEEEEEEECCE
Confidence            4679999999998755432 233455  577889999999999975543

>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}

Probab=89.13  E-value=3.1  Score=27.21  Aligned_cols=45  Identities=13%  Similarity=0.116  Sum_probs=31.8

Q ss_pred             CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+. +-.+...|  ..+|++.+.|.|.+.+.-..
T Consensus        29 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   76 (89)
T 3cnk_A           29 NNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGH   76 (89)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEEEETTEEEEEEECCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCceeEEEEECCCCEEEEEEEECCCccEEEEEEECC
Confidence            45789999999986332 22334556  56678999999999887544

>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0

Probab=88.96  E-value=3.1  Score=28.01  Aligned_cols=45  Identities=11%  Similarity=0.159  Sum_probs=31.8

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|+++..|.|.+.+.=..
T Consensus        38 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~p~~~G~y~i~V~~~g   85 (100)
T 3rgh_A           38 SAELTIEICSEAGLPAEVYIQDHGDGTHTITYIPLCPGAYTVTIKYGG   85 (100)
T ss_dssp             SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEECCSSEEEEEEEEETT
T ss_pred             CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            4579999999998754432 334456  46778899999988875443

>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=88.06  E-value=2.5  Score=28.87  Aligned_cols=45  Identities=13%  Similarity=0.213  Sum_probs=32.9

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        42 ~~~l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   89 (108)
T 2dj4_A           42 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   89 (108)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CceEEEEEECCCCCEeeeEEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            5679999999999655432 334556  46678899999999887554

>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A

Probab=88.00  E-value=1.9  Score=29.83  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      +..+.+.|.+|+|..+.-. .+...|  ..+|++++.|.|.+.+.-..
T Consensus        40 ~g~l~v~V~~P~g~~~~~~v~d~~~gty~v~ytP~~~G~h~v~V~~~g   87 (112)
T 2d7p_A           40 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNG   87 (112)
T ss_dssp             CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCCEEEEEECCCCCeeeeEEEeCCCCeEEEEEEcCCCEeEEEEEEECC
Confidence            3579999999999754432 223445  57788999999998886554

>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.90  E-value=2.4  Score=28.85  Aligned_cols=44  Identities=16%  Similarity=0.294  Sum_probs=33.1

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.+..+ +-.+...|  ..+|++.+.|.|.+.+.-..
T Consensus        41 ~~~l~v~v~~p~~~~v-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2ee6_A           41 AGGLSIAVEGPSKAEI-TFDDHKNGSCGVSYIAQEPGNYEVSIKFND   86 (105)
T ss_dssp             CCCEEEEEESSSCEEE-EECCCCSSCCCEEEEESSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEE-EEEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4579999999998655 33344555  68889999999999987544

>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=87.37  E-value=1.2  Score=30.44  Aligned_cols=46  Identities=17%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.+.|.+|+|..+.-. .+...|  ..+|++++.|.|.+.+.-...
T Consensus        30 ~~~l~v~v~~P~G~~~~~~v~d~~dGty~v~ytP~e~G~h~v~V~~~g~   78 (102)
T 2dlg_A           30 SSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHTVSVKYRGQ   78 (102)
T ss_dssp             GGGCEEEEECTTSCEEECEEEECSSSEEEEEBCCCTTCEEEEEEESSSS
T ss_pred             CCCEEEEEECCCCCEeeeEEEECCCCEEEEEEEecCCEeEEEEEEECCE
Confidence            4579999999999865443 233455  466789999999999976553

>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}

Probab=87.05  E-value=2.2  Score=29.71  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=45.0

Q ss_pred             CcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcCCCCe---EeeeeeecCCEEEEEcCCCceeeEEEEcCC
Q 028009           35 DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNV---VHTVKGTSGDKFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        35 ~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p~g~~---l~~~~~~~~g~f~f~~~~~G~y~iCf~n~~  111 (215)
                      +...+...+.+ |+.+++..   ++       +..+.+.|.+|+|+.   ++.......+.++-+.+.+|+|++=+....
T Consensus        28 ~~~~Y~~~a~a-GQ~l~V~l---s~-------~~~~~f~I~~P~~~~~~~l~~g~~~~~~~~~g~LP~sG~Y~i~V~~~r   96 (114)
T 4dzg_A           28 DTIHYTLVAXA-GQTMTVXI---GG-------SSNANFNVFAPGAQPGQAEAIGRNDGDGQWQGALPASGXYLIQVYQMR   96 (114)
T ss_dssp             CCEEEECCC-C-CCEEEC-C---EE-------STTCEEEEECTTCCTTTSCCSEECCTTSCCEEECSSCC-CEEEEECCH
T ss_pred             CceEEEEEecC-CCEEEEEe---CC-------CCcEEEEEECCCCCcccceeccccCCcceEEEEecCCCcEEEEEEecc
Confidence            34577777874 88887765   22       245888999999874   344333334588889999999999998763

>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.63  E-value=4.3  Score=28.00  Aligned_cols=44  Identities=11%  Similarity=0.276  Sum_probs=32.5

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|++..+ +-.+...|  ..+|++.+.|.|.+.+.-..
T Consensus        51 ~~~l~v~v~~p~~~~~-~v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   96 (115)
T 2eea_A           51 EGGLDLAIEGPSKAEI-SCIDNKDGTCTVTYLPTLPGDYSILVKYND   96 (115)
T ss_dssp             SSCEEEEEESSSCCEE-CCBCCSSSEEEEEEECSSCSCEEEEEEESS
T ss_pred             CCceEEEEECCCCceE-EEEECCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            4579999999988544 23344566  57788999999999887444

>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A

Probab=85.54  E-value=4.6  Score=26.76  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.|..+. +-.+...|  ..+|++++.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   83 (96)
T 1v05_A           36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeeEEEEEeCCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            45789999999886332 22334556  56678899999999887544

>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A

Probab=84.66  E-value=4.5  Score=26.90  Aligned_cols=44  Identities=9%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.+..+.- .+...|  ..+|++++.|.|.+.+.-..
T Consensus        36 ~~~l~v~v~~p~~~~~~v-~d~~dGty~v~Y~p~~~G~y~i~V~~~g   81 (97)
T 2bp3_A           36 EGGLSLAIEGPSKAEISC-TDNQDGTCSVSYLPVLPGDYSILVKYNE   81 (97)
T ss_dssp             SEEEEEEEEESSCCEEEE-EECSSSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEE-EECCCCEEEEEEEeCCCCcEEEEEEECC
Confidence            346888888888754432 334556  57788899999999987444

>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.48  E-value=1.5  Score=30.69  Aligned_cols=45  Identities=9%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        53 ~~~l~v~v~~p~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g  100 (119)
T 2e9j_A           53 EGLLAVQITDQEGKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG  100 (119)
T ss_dssp             CCCEECCEECTTCCCCCEEEEECCSSEEEEEECCCSCSEEEECCEESS
T ss_pred             CCeEEEEEECCCCCEEEEEEEECCCCEEEEEEEeCCCEEEEEEEEECC
Confidence            5679999999998644332 233456  46678899999998886544

>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.76  E-value=6.2  Score=27.05  Aligned_cols=45  Identities=11%  Similarity=0.228  Sum_probs=33.0

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        41 ~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p~~~G~y~i~V~~~g   88 (113)
T 2dia_A           41 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   88 (113)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CccEEEEEECCCCCEeeEEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            4679999999988655432 344556  56778999999999997555

>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A

Probab=83.52  E-value=6.8  Score=25.84  Aligned_cols=44  Identities=11%  Similarity=0.226  Sum_probs=31.7

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.+..+.- .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        33 ~~~~~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g   78 (94)
T 2w0p_A           33 AGGLAIAVEGPSKAEISF-EDRKDGSCGVAYVVQEPGDYEVSVKFNE   78 (94)
T ss_dssp             SCCEEEEEEESSCCEEEE-EECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCeEEE-EECCCCEEEEEEEECCCceEEEEEEECC
Confidence            456888899998854432 334556  57788999999999987544

>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=83.00  E-value=6.7  Score=26.53  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|.+..+.- .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        41 ~g~l~v~v~gp~~~~~~v-~d~~dGty~v~Y~p~~~G~y~I~V~~~g   86 (105)
T 2dic_A           41 IGGLGITVEGPSESKINC-RDNKDGSCSAEYIPFAPGDYDVNITYGG   86 (105)
T ss_dssp             SSCEEEEEESSSCCCCEE-EECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCceEEEEECCCCCeEEE-EECCCCeEEEEEEeCCCeEEEEEEEECC
Confidence            456889999998764432 233456  67788999999999987544

>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10

Probab=82.85  E-value=1.5  Score=30.66  Aligned_cols=46  Identities=11%  Similarity=0.169  Sum_probs=33.8

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.+.|.+|+|..+--. .+...|  ..+|++.+.|.|.+.+.-...
T Consensus        44 ~~~l~v~v~~PsG~~~~~~v~~~~~g~y~v~ftP~e~G~h~v~V~~~g~   92 (116)
T 2dmc_A           44 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNGN   92 (116)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECBBSSS
T ss_pred             CCCEEEEEECCCCCEEeeEEEeCCCCeEEEEEEeCCCeeEEEEEEECCE
Confidence            4579999999999754332 233455  577899999999999875553

>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}

Probab=82.20  E-value=5.4  Score=27.69  Aligned_cols=44  Identities=11%  Similarity=0.253  Sum_probs=31.8

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.+-.+. -.+...|  ..+|++.+.|.|.+.+.-..
T Consensus        48 ~~~l~v~v~~p~~~~~~-v~d~~dGty~v~Y~p~~~G~y~I~V~~~g   93 (119)
T 2k9u_A           48 AGGLSIAVEGPSKAEIA-FEDRKDGSCGVSYVVQEPGDYEVSIKFND   93 (119)
T ss_dssp             SEEEEEEEESSSCCEEE-EECCSSSEEEEEEECCSSEEEEEEEEETS
T ss_pred             CCcEEEEEeCCCCCeEE-EEECCCCEEEEEEEECCCceEEEEEEECC
Confidence            45688999999884332 2344566  57788999999999997544

>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A {Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A

Probab=80.89  E-value=7.3  Score=27.97  Aligned_cols=44  Identities=9%  Similarity=0.136  Sum_probs=31.7

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC-EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD-KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g-~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|++..+.-. +..+| ..+|++.+.|.|.+.+.-..
T Consensus        75 ~g~l~v~I~gPs~~~~~~~-d~~dGy~V~YtP~~~G~y~I~Vk~~g  119 (138)
T 2nqc_A           75 SGALSVTIDGPSKVQLDCR-ECPEGHVVTYTPMAPGNYLIAIKYGG  119 (138)
T ss_dssp             SCCEEEEEESSSCCEEEEE-EETTEEEEEEECCSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCeeeEE-ECCCcEEEEEEcCCCEEEEEEEEECC
Confidence            4579999999998755332 23444 66778999999988886444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d1olma2	119	b.132.1.1 (A:275-393) Supernatant protein factor (	1e-04

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 15/108 (13%)

Query: 23  IGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGI--DFTVTSPAGN 80
           I R SS  V           +++ G  +   F+    D+ +         +         
Sbjct: 10  ISRGSSHQVEYE--------ILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTE 61

Query: 81  VVHTVKGTSGDKFE---FKAPRSGMYKFCFNNPYST--PETVSFYIHV 123
           V+   +  S    E         G+Y   F+N YS    + V+F + V
Sbjct: 62  VLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEV 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1olma2	119	Supernatant protein factor (SPF), C-terminal domai	97.61
d2d7ma1	102	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	92.79
d2dmba1	111	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	91.33
d2dj4a1	101	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	90.25
d2w0pa1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	89.46
d1v05a_	96	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.43
d2nqca1	97	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.42
d2d7na1	80	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	89.36
d2diaa1	100	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	88.65
d2d7pa1	99	Filamin C {Human (Homo sapiens) [TaxId: 9606]}	88.17
d2di8a1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.84
d1qfha2	108	F-actin cross-linking gelation factor (ABP-120) re	87.71
d2dica1	98	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	87.05
d2j3sa2	88	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	85.73
d2bp3a1	92	Filamin a {Human (Homo sapiens) [TaxId: 9606]}	85.47
d2di9a1	118	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	84.03
d2dmca1	103	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	83.8
d2diba1	115	Filamin b {Human (Homo sapiens) [TaxId: 9606]}	82.03

>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Supernatant protein factor (SPF), C-terminal domain
superfamily: Supernatant protein factor (SPF), C-terminal domain
family: Supernatant protein factor (SPF), C-terminal domain
domain: Supernatant protein factor (SPF), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00065  Score=46.86  Aligned_cols=88  Identities=17%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             EEEEeCCcceeeEecccCCcEEEEEEEEEeCccccCCCCCCeeEEEEcC--C------C--CeEeeeeeecCC----EEE
Q 028009           29 LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSP--A------G--NVVHTVKGTSGD----KFE   94 (215)
Q Consensus        29 l~f~l~~~eCF~e~v~~~~~~i~~~y~v~~~~~~~~~~~~~i~~~I~~p--~------g--~~l~~~~~~~~g----~f~   94 (215)
                      +++..|+....-..+..+|+.|...|.+.         +.+|.|.|.-.  .      +  ..+....+...+    .=+
T Consensus         8 vtV~~G~~~~v~~~v~~~Gs~l~WeF~t~---------~~DI~Fgv~~~~~~~~~~~~~~~~~v~p~~r~~s~~~p~~g~   78 (119)
T d1olma2           8 VQISRGSSHQVEYEILFPGCVLRWQFMSD---------GADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGT   78 (119)
T ss_dssp             EEECTTCEEEEEEEECSTTCEEEEEEEES---------SSCEEEEEEEC----CCCCGGGSEEEEEEEEECTTTSCEEEE
T ss_pred             EEECCCCEEEEEEEEeCCCcEEEEEEEeC---------CccEEEEEEEecccCCccccCceEEEeeeEEecCCceeEccE
Confidence            33333454444455555678887777652         24688887521  1      1  123332221111    235


Q ss_pred             EEcCCCceeeEEEEcCCC--CCeEEEEEEEEcc
Q 028009           95 FKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH  125 (215)
Q Consensus        95 f~~~~~G~y~iCf~n~~~--~~~~V~f~i~~~~  125 (215)
                      +.++++|.|.+||+|+.|  ..|.|.+.+++..
T Consensus        79 ~~~~~~G~Y~l~FDNs~S~~~sK~l~Y~i~v~~  111 (119)
T d1olma2          79 LTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLL  111 (119)
T ss_dssp             EECCSCEEEEEEEECTTCCCCSEEEEEEEEEEC
T ss_pred             EEcCCCEEEEEEEeCCcceEEeeEEEEEEEEEC
Confidence            778999999999999998  5899999999853

>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.79  E-value=0.19  Score=32.67  Aligned_cols=45  Identities=11%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|+.+.-. .+...|  ..+|++++.|.|.+.+.-..
T Consensus        36 ~g~l~v~i~~p~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   83 (102)
T d2d7ma1          36 EGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGG   83 (102)
T ss_dssp             SSCEEEEEECTTSCBCCEEEEECSSSCEEEEECCCSCEEEEEEEEESS
T ss_pred             CCcEEEEEEeCCCCEeeeEEEeCCCcEEEEEEEECCCEeEEEEEEECC
Confidence            4579999999999865433 223345  56899999999999986544

>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.33  E-value=0.4  Score=31.56  Aligned_cols=46  Identities=15%  Similarity=0.197  Sum_probs=34.5

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ...+.+.|.+|+|+.+.-. .+...|  ..+|++.+.|.|.+.+.-...
T Consensus        35 ~g~l~v~v~~p~g~~~~~~v~d~~~G~y~v~f~P~~~G~h~i~V~~~g~   83 (111)
T d2dmba1          35 KGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGV   83 (111)
T ss_dssp             SCCEEEEEECTTSCBCCCEEEECTTSCEEEEEECSSCEEEEEEEEESSC
T ss_pred             CCcEEEEEEECCCCEEEeEEEECCCCEEEEEEEECCCCCEEEEEEECCE
Confidence            4579999999998866433 233455  578899999999999965553

>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.69  Score=29.71  Aligned_cols=45  Identities=13%  Similarity=0.213  Sum_probs=33.0

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+.-. .+...|  ..+|++.+.|.|.+-+.-..
T Consensus        35 ~g~l~v~i~~p~g~~~~~~v~~~~dG~y~v~y~P~~~G~y~i~V~~~g   82 (101)
T d2dj4a1          35 LAPLEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPSQEGPYMVSVKYAD   82 (101)
T ss_dssp             SCCEEEEEECSSSCEECCCCEECSSSEEEEEECCSSCEEEEEEEEESS
T ss_pred             CCCEEEEEEECCCCEeEEEEEeCCCCEEEEEEEeCCCeeEEEEEEECC
Confidence            5679999999999876533 233456  56788999999998884443

>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=1  Score=28.45  Aligned_cols=44  Identities=11%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|++..+.-. +...|  ..+|++.+.|.|.+.+.-..
T Consensus        32 ~g~l~v~v~gp~~~~v~v~-d~~dg~y~v~ytP~~~G~y~i~V~~~g   77 (92)
T d2w0pa1          32 AGGLAIAVEGPSKAEISFE-DRKDGSCGVAYVVQEPGDYEVSVKFNE   77 (92)
T ss_dssp             SCCEEEEEEESSCCEEEEE-ECTTSCEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEeCCceEEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4579999999998765433 33455  56899999999999885544

>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.92  Score=28.71  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             CCCeeEEEEcCCCCeEe-eeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVH-TVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~-~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|+|..+- .-.+...|  ..+|++.+.|.|++.+.-..
T Consensus        36 ~g~l~v~v~~p~g~~v~~~v~~~~~g~y~v~y~P~~~G~~~v~V~~~g   83 (96)
T d1v05a_          36 TNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGD   83 (96)
T ss_dssp             SCCEEEEEECSSSCCSEEEEEECSTTEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCceEEEEEECCCCeeeeEEEECCCCEEEEEEEeCCCccEEEEEEECC
Confidence            45799999999987543 22334555  56789999999999986554

>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.88  Score=28.94  Aligned_cols=42  Identities=12%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCCEEEEEcCCCceeeEEEE
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFN  108 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g~f~f~~~~~G~y~iCf~  108 (215)
                      ..++.+.|.+|++..+.-..+...-..+|++.+.|.|.+.+.
T Consensus        34 ~~~l~v~v~~p~~~~~~~~~~~~~y~v~y~P~~~G~h~i~V~   75 (97)
T d2nqca1          34 SGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIK   75 (97)
T ss_dssp             SCCEEEEEESSSCCEEEEEEETTEEEEEEECCSCEEEEEEEE
T ss_pred             CCceEEEEEcCCCceEEEEECCCcEEEEEEeCCCEeEEEEEE
Confidence            457999999999876654433222268899999999999984

>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.43  Score=29.55  Aligned_cols=45  Identities=9%  Similarity=0.159  Sum_probs=33.3

Q ss_pred             CCCeeEEEEcCCCCeEeeee-eecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVK-GTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~-~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|+|..+...- +...|  ..+|++.+.|.|.+=+....
T Consensus        14 ~g~l~~~v~~P~G~~~~~~v~~~~dg~y~v~y~P~~~G~h~v~V~~~g   61 (80)
T d2d7na1          14 KGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDG   61 (80)
T ss_dssp             SSCEEEEEECTTSCEECCEEEECSSSCEEEEECCSSCEEEEEEEEESS
T ss_pred             CCcEEEEEECCCCCEeceEEEECCCCEEEEEEEECCcEEEEEEEEECC
Confidence            56799999999998764332 23445  67888999999988775555

>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.58  Score=29.93  Aligned_cols=45  Identities=11%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|+|..+.-. .+...|  ..+|++.+.|.|.+.+.-..
T Consensus        34 ~~~l~v~i~~~~g~~~~~~v~~~~dg~y~v~y~P~~~G~h~i~V~~~g   81 (100)
T d2diaa1          34 PGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVPLTAGMYTLTMKYGG   81 (100)
T ss_dssp             SCCEEEEEEETTTEECEEEEEECTTSEEEEEEECSSCEEEEEEEEETT
T ss_pred             CCcEEEEEEeCCCCEeeEEEEECCCCEEEEEEEeCcCccEEEEEEECC
Confidence            4679999999998865432 334455  57789999999999996554

>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=0.93  Score=28.98  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             CCCeeEEEEcCCCCeEeeee-eecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVK-GTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~-~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ...+.+.|.+|+|..+--.. +...|  ..+|++.+.|.|.+.+.-...
T Consensus        33 ~g~l~v~v~~p~g~~v~~~v~~~~dg~y~v~y~P~~~G~~~i~V~~~g~   81 (99)
T d2d7pa1          33 RGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA   81 (99)
T ss_dssp             CSCEEEEEECSSSCBCCCEECSCBTTEEEEEECCSSCEEEEEEEEESSC
T ss_pred             CCeEEEEEEcCCCCEeeeEEEeCCCCEEEEEEEECCCCcEEEEEEECCE
Confidence            45799999999998654332 23456  456889999999998866553

>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.84  E-value=1.2  Score=28.30  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|++..+.-. ....|  ..+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~i~gp~~~~v~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2di8a1          34 YGGISLAVEGPSKVDIQTE-DLEDGTCKVSYFPTVPGVYIVSTKFAD   79 (98)
T ss_dssp             BCCEEEEEESSSCCCEECC-BCTTSCEEEEECCCSCSEEEEEEEESS
T ss_pred             CCceEEEEEeCCCceEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4579999999988765432 23345  56789999999999885443

>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor (ABP-120) repeats {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: F-actin cross-linking gelation factor (ABP-120) repeats
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.71  E-value=1.9  Score=27.95  Aligned_cols=45  Identities=9%  Similarity=0.130  Sum_probs=32.1

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+.+.|.+|.+.+-..-.+...|  ..+|++...|.|.+.+.-..
T Consensus        30 ~~~~~v~i~gp~~~~~~~v~d~~dGty~v~y~p~~~G~y~v~V~~~g   76 (108)
T d1qfha2          30 GDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG   76 (108)
T ss_dssp             CCCEEEEEEECCSEEEEEEEECSSSEEEEEEEEESSEEEEEEEEETT
T ss_pred             CCeEEEEEECCCcccccEEEECCCCEEEEEEEECcceeEEEEEEECC
Confidence            4578899999988644333444556  46678899999998886444

>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.05  E-value=1.5  Score=27.84  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=31.9

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|++..+--. ....|  ..+|++.+.|.|.+.+.-..
T Consensus        34 ~g~l~v~v~~p~~~~~~v~-~~~dg~y~v~y~P~~~G~y~i~V~~~g   79 (98)
T d2dica1          34 IGGLGITVEGPSESKINCR-DNKDGSCSAEYIPFAPGDYDVNITYGG   79 (98)
T ss_dssp             SSCEEEEEESSSCCCCEEE-ECSSSCEEEEECCSSCEEEEEEEEETT
T ss_pred             CCCcEEEEEeCCCcEEEEE-ECCCCEEEEEEEECCCceEEEEEEECC
Confidence            4579999999988755322 23445  46789999999999986554

>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=0.23  Score=31.35  Aligned_cols=45  Identities=16%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCCeeEEEEcCCCCeEeeee-eecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVK-GTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~-~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ..++.+.|.+|+|+.+--.- ....|  ..+|++.+.|.|.+-+.-..
T Consensus        23 ~g~l~v~v~~P~g~~~~~~v~~~~~g~y~v~y~P~~~G~h~i~V~~~g   70 (88)
T d2j3sa2          23 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG   70 (88)
T ss_dssp             CCCEEEEEECTTCCEEEEBC-------CCCBCCCCSCEEEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEeeEEEECCCCEEEEEEEECCceeEEEEEEECC
Confidence            45799999999998765432 22345  45688999999988886554

>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.47  E-value=1.6  Score=27.34  Aligned_cols=42  Identities=10%  Similarity=0.275  Sum_probs=30.4

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCCE--EEEEcCCCceeeEEEEc
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGDK--FEFKAPRSGMYKFCFNN  109 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g~--f~f~~~~~G~y~iCf~n  109 (215)
                      ..++.+.|.+|++..+.-.. ...|.  .+|++++.|.|.+-+.-
T Consensus        33 ~g~l~v~v~~p~~~~~~v~~-~~dg~y~v~ytP~~~G~h~i~V~~   76 (92)
T d2bp3a1          33 EGGLSLAIEGPSKAEISCTD-NQDGTCSVSYLPVLPGDYSILVKY   76 (92)
T ss_dssp             SEEEEEEEEESSCCEEEEEE-CSSSEEEEEEECSSCEEEEEEEEE
T ss_pred             CCceEEEEEeCCCceEEEEE-CCCCEEEEEEEECCCccEEEEEEE
Confidence            44688899999887654433 34564  56899999999887643

>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=2.8  Score=27.28  Aligned_cols=45  Identities=13%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             CCCeeEEEEcCCCCeEeeeeeecCC--EEEEEcCCCceeeEEEEcCCC
Q 028009           67 HPGIDFTVTSPAGNVVHTVKGTSGD--KFEFKAPRSGMYKFCFNNPYS  112 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~~~~~~g--~f~f~~~~~G~y~iCf~n~~~  112 (215)
                      ..++.+.|.+|++..+.-. +...|  ..+|++.+.|.|.+.+.-...
T Consensus        54 ~g~l~v~i~~p~~~~~~v~-~~~dG~y~v~ytP~~~G~y~i~V~~~g~  100 (118)
T d2di9a1          54 TGGLGLTVEGPCEAKIECS-DNGDGTCSVSYLPTKPGEYFVNILFEEV  100 (118)
T ss_dssp             SSCEEEEECSSSCCEEEEE-ECSSSEEEEEEECSSSSEEEEEEEESSC
T ss_pred             CCccEEEEecCCceEEEEE-ECCCCEEEEEEEeCCcEeEEEEEEECCE
Confidence            4579999999998765332 33455  578899999999999875553

>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.80  E-value=0.47  Score=30.60  Aligned_cols=42  Identities=12%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCCE--EEEEcCCCceeeEEEE
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGDK--FEFKAPRSGMYKFCFN  108 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g~--f~f~~~~~G~y~iCf~  108 (215)
                      ..++.+.|.+|+|..+--. .....|.  .+|++.+.|.|.+=+.
T Consensus        37 ~g~l~v~v~~P~g~~v~~~v~~~~dg~y~v~f~P~~~G~h~i~V~   81 (103)
T d2dmca1          37 LSSLTASIKAPSGRDEPCLLKRLPNNHIGISFIPREVGEHLVSIK   81 (103)
T ss_dssp             STTBCCEEECTTSCBCCEEEEEETTTEEEEEECCCSCEEEEEECB
T ss_pred             CCcEEEEEECCCCCEeccEEEECCCCEEEEEEEeCCceeEEEEEE
Confidence            4579999999999865432 2345564  5688999999987553

>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Filamin repeat (rod domain)
domain: Filamin b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.8  Score=30.09  Aligned_cols=45  Identities=11%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             CCCeeEEEEcCCCCeEeee-eeecCC--EEEEEcCCCceeeEEEEcCC
Q 028009           67 HPGIDFTVTSPAGNVVHTV-KGTSGD--KFEFKAPRSGMYKFCFNNPY  111 (215)
Q Consensus        67 ~~~i~~~I~~p~g~~l~~~-~~~~~g--~f~f~~~~~G~y~iCf~n~~  111 (215)
                      ...+++.|.+|+|..+--. .+...|  ..+|++++.|.|++.+.-..
T Consensus        49 ~~~l~v~v~~p~g~~v~~~v~~~~dG~y~v~y~P~~~G~~~i~V~~~g   96 (115)
T d2diba1          49 GDHIKAHIANPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDD   96 (115)
T ss_dssp             CSCCCEECCCSSSCCCCCEEEECSSSEEEEEECCSSCSEEEEEEBSSS
T ss_pred             CccEEEEEEeCCCCEeeeEEEECCCCEEEEEEEeCCCEeEEEEEEECC
Confidence            5679999999999765332 233456  56788999999999986554