Citrus Sinensis ID: 028013

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Secondary Structure (PSIPRED)
ccccccHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccEEEEHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNyiiadpfipyTSILAGLLACKVVYDLTQLISTFYFKAYNgltkiqrmewnnrgiSTVHAIFITALSLYYVFWSdlfsdqqhtgpitfrsswlsnfglgvsVGYFLADLGMIFWLypslggmeyVVHHSLSGIAVAYSMFSGEGQLYTYMVLISevttpeinmRWYLdtagmkrstTYLVNGVIIFFAWLVS
Flexible Loop (DISEMBL)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Low Complexity Region (SEG)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Disordered region (IsUnstruct)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLV*
Disordered Region (DISOPRED)
*************YQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Disordered Region (DISEMBL)
*********AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Disordered Region (DISPRO)
****EQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q6PGS5	262	Transmembrane protein 56-	N/A	no	0.688	0.564	0.291	1e-12
Q5XIY2	264	Transmembrane protein 56-	no	no	0.725	0.590	0.272	2e-11
Q8CGF5	276	Transmembrane protein 56	yes	no	0.674	0.525	0.246	7e-11
Q6GLX2	258	Transmembrane protein 56-	N/A	no	0.823	0.686	0.256	2e-10
Q96MV1	263	Transmembrane protein 56	yes	no	0.674	0.551	0.259	4e-10
Q6P4N1	259	Transmembrane protein 56	no	no	0.813	0.675	0.254	6e-10
Q550S9	257	Transmembrane protein 56	yes	no	0.767	0.642	0.266	1e-09
Q550T0	258	Transmembrane protein 56	no	no	0.702	0.585	0.246	2e-06
Q1LXV8	242	Transmembrane protein 136	no	no	0.544	0.483	0.314	5e-06
Q0VD42	245	Transmembrane protein 136	no	no	0.623	0.546	0.297	8e-06

>sp|Q6PGS5|TM56B_XENLA Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 54  ISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRS 113
           +ST     ++ L+  Q++EWN+R +S+ HA+ +    LY +    ++ D  +  P+ +  
Sbjct: 30  LSTRLTGGFHKLSARQKIEWNSRTVSSFHALVVGCFCLYIL----VYDDAVNADPV-WGD 84

Query: 114 SWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YT 171
            ++    + V+ GY ++DL +I + +  +G   +V HH  +  A  Y +  GEG L  + 
Sbjct: 85  PFMVKLNVAVTSGYLISDLLLIIYYWKEIGDKYFVTHHLAALYACYYVL--GEGMLPYFG 142

Query: 172 YMVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGVII 208
              LI+E +TP +N RW+ +  G  K S   +VNGV++
Sbjct: 143 NFRLIAEFSTPFVNQRWFFEVLGYSKYSLPNMVNGVLM 180

Xenopus laevis (taxid: 8355)

>sp|Q5XIY2|TM56B_DANRE Transmembrane protein 56-B OS=Danio rerio GN=tmem56b PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 9/165 (5%)

Query: 50  LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
           ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct: 23  VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
            +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct: 79  -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query: 170 YTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV-NGV---IIFF 210
           +    LISE++TP +N RW+ +     R+   +V NG+   ++FF
Sbjct: 138 FANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFF 182

Danio rerio (taxid: 7955)

>sp|Q8CGF5|TMM56_MOUSE Transmembrane protein 56 OS=Mus musculus GN=Tmem56 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 80/154 (51%), Gaps = 9/154 (5%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            YN L+  +++EWN+R +ST H++ +    LY  F    F +   T P+    +++ N  
Sbjct: 50  GYNSLSIDKKIEWNSRVVSTCHSLLVGIFGLYLFF----FDEATITDPLWGDPTYV-NIN 104

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           +  + GY ++DL +I + +  +G   +++HH     A  + + +G         L++E++
Sbjct: 105 IATASGYLISDLLIILFNWKVIGDKFFIIHHCAGLTAYYFVLTTGALAYIANFRLLAELS 164

Query: 181 TPEINMRWYLDTAGMKR-STTYLVNGV---IIFF 210
           +P +N RW+ +     + S   ++NG+   ++FF
Sbjct: 165 SPFVNQRWFFEALKYPKFSKANVINGILMTVVFF 198

Mus musculus (taxid: 10090)

>sp|Q6GLX2|TM56A_XENLA Transmembrane protein 56-A OS=Xenopus laevis GN=tmem56-a PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 10/187 (5%)

Query: 29  DPFIPYTSILAGLLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87
           D  I Y  +    L  ++++  ++  + T Y   Y  L+  ++ EW++R +ST HA+ + 
Sbjct: 3   DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62

Query: 88  ALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEY 147
           +  LY +     + D  +  PI     W+    + ++ GY + DL ++   +  +     
Sbjct: 63  SACLYIL----AYDDAVNADPIWGDPFWV-KMNVAITCGYLVQDLLLLARFWKVMRDPYM 117

Query: 148 VVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGV 206
           V HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS+   L+NG+
Sbjct: 118 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGL 177

Query: 207 ---IIFF 210
              ++FF
Sbjct: 178 AMALVFF 184

Xenopus laevis (taxid: 8355)

>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 81/154 (52%), Gaps = 9/154 (5%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            +N L+  +++EWN+R +ST H++ +    L Y+F   LF +     P+    S L+N  
Sbjct: 37  GFNSLSFKKKIEWNSRVVSTCHSLVVGIFGL-YIF---LFDEATKADPLWGGPS-LANVN 91

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           + ++ GY ++DL +I   +  +G   +++HH  S  A    + +G         L++E++
Sbjct: 92  IAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYYLVLKNGVLAYIGNFRLLAELS 151

Query: 181 TPEINMRWYLDTAGMKR-STTYLVNGV---IIFF 210
           +P +N RW+ +     + S   ++NG+   ++FF
Sbjct: 152 SPFVNQRWFFEALKYPKFSKAIVINGILMTVVFF 185

Homo sapiens (taxid: 9606)

>sp|Q6P4N1|TMM56_XENTR Transmembrane protein 56 OS=Xenopus tropicalis GN=tmem56 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 31  FIPYTSILAGLLACKVVYDL-TQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITAL 89
           FI Y  +    L  ++++ + +    T Y   Y  L+  ++ EW++R +ST HA+ + + 
Sbjct: 6   FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65

Query: 90  SLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVV 149
            LY +     + +  +  PI     W+    + ++ GY + DL ++   +  +     V 
Sbjct: 66  CLYIL----AYDEAVNADPIWGDPFWV-KMNVAITCGYLVHDLLLLARFWKVMRDPYMVC 120

Query: 150 HHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRST-TYLVNGV-- 206
           HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS+   L+NG+  
Sbjct: 121 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAM 180

Query: 207 -IIFF 210
            ++FF
Sbjct: 181 ALVFF 185

Xenopus tropicalis (taxid: 8364)

>sp|Q550S9|TM56B_DICDI Transmembrane protein 56 homolog B OS=Dictyostelium discoideum GN=tmem56b PE=3 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 95/180 (52%), Gaps = 15/180 (8%)

Query: 37  ILAGLLACKVVYD-----LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSL 91
           IL   L C +++      L ++I   + K   G  + +R+EW NR ISTV+AI  +ALS+
Sbjct: 8   ILYQDLPCFLLFTSLHLFLPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSI 67

Query: 92  YYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHH 151
           Y +++++   +   +      +S +S F       YF+ D  +  +    L     ++HH
Sbjct: 68  YCLYYNEWIVNSLRS------TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHH 121

Query: 152 SLSGIAVAYSMFSGEGQLYTYMV--LISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIF 209
           +++   ++++   G+G  +  ++    +E+TTP IN+R++L    +K    Y++NG++IF
Sbjct: 122 TIA--LLSFTFLGGKGLAHHLLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIF 179

Dictyostelium discoideum (taxid: 44689)

>sp|Q550T0|TM56A_DICDI Transmembrane protein 56 homolog A OS=Dictyostelium discoideum GN=tmem56a PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 50  LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
           +  L+ T +      L+   ++EW N+ ++T+ +I   +LS Y ++    +   + T   
Sbjct: 28  IPSLLQTIFNNNEKQLSYSSKIEWTNKIVATISSIVSFSLSCYCIYNKKSWVTNEMTS-- 85

Query: 110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIA--VAYSMFSGEG 167
              +  LS+F L     YFL D   +   Y  L     ++HH + GI   V   ++  + 
Sbjct: 86  ---TCALSDFILKFISFYFLFDALHLIIYYKQLFDWPIIIHHLVVGILSYVYIGLYYKKV 142

Query: 168 QLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNG 205
            L     L+ E+T P I+M+W+L    ++    Y +NG
Sbjct: 143 HLTLLYFLLFEITNPFIHMKWFLKDLKLENHILYSING 180

Dictyostelium discoideum (taxid: 44689)

>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLAD 131
           EWN R ++  H I I  L+ Y  F   +      T P T  +++     L +S+GYFL D
Sbjct: 32  EWNCRLVTLFHGILIICLTAYIGF---IAGPWPFTHPGT-ENTYFQILTLVLSLGYFLFD 87

Query: 132 LGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEVTTPEINMRWYL 190
             M + +Y    G   + HH++S   +  ++  GE  + T  VL  SE+T P +  RW+L
Sbjct: 88  --MAWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIETCAVLFGSEITNPLLQARWFL 145

Query: 191 DTAG 194
              G
Sbjct: 146 KRMG 149

Danio rerio (taxid: 7955)

>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 7/141 (4%)

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           ++  L K +  EWN R ++  H I    LS Y  F    +       P T     L    
Sbjct: 22  SFCRLNKHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTP----LQVHV 77

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLI-SEV 179
           L +++GYF+ DLG    +Y    G   + HH+LS + +  ++  GE       VL  SE+
Sbjct: 78  LCLTLGYFIFDLGWC--IYFRSEGPLMLAHHTLSILGIIVALVLGESGTEVNAVLFGSEI 135

Query: 180 TTPEINMRWYLDTAGMKRSTT 200
           T P + +RW+L   G   S T
Sbjct: 136 TNPLLQIRWFLRETGHYHSFT 156

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
359484042	275	PREDICTED: transmembrane protein 56-like	1.0	0.781	0.804	1e-100
449487670	274	PREDICTED: transmembrane protein 56-B-li	1.0	0.784	0.772	2e-97
449455419	274	PREDICTED: transmembrane protein 56-B-li	1.0	0.784	0.772	2e-97
296085343	267	unnamed protein product [Vitis vinifera]	0.958	0.771	0.815	3e-97
255550713	275	conserved hypothetical protein [Ricinus	1.0	0.781	0.786	3e-96
224136440	275	predicted protein [Populus trichocarpa]	1.0	0.781	0.776	5e-96
224115498	275	predicted protein [Populus trichocarpa]	1.0	0.781	0.767	8e-96
297851934	278	hypothetical protein ARALYDRAFT_473644 [	0.986	0.762	0.754	8e-91
18397885	278	TRAM, LAG1 and CLN8 (TLC) lipid-sensing	0.986	0.762	0.75	1e-90
222423958	278	AT1G31300 [Arabidopsis thaliana]	0.986	0.762	0.745	2e-89

>gi|359484042|ref|XP_002263050.2| PREDICTED: transmembrane protein 56-like [Vitis vinifera]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/215 (80%), Positives = 197/215 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA SE+T+ AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK
Sbjct: 1   MASSERTIMAIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FG
Sbjct: 61  SYAGLTKIQRIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYFLAD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVT
Sbjct: 121 LGVSVGYFLADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TPEINMRWYLDTAGMKRS+ YL+NG++IFF WLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSSAYLINGIVIFFGWLVA 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487670|ref|XP_004157742.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 166/215 (77%), Positives = 197/215 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYVGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TPEINMRWYLDTAGMKRS  YL+NG++IFFAWL++
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIA 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455419|ref|XP_004145450.1| PREDICTED: transmembrane protein 56-B-like [Cucumis sativus]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 166/215 (77%), Positives = 197/215 (91%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +TV AIKSYQ+QA  LVKNY++AD F+P+TS+L G+LACK+VYDLTQL+S FYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           +Y GLTKIQR+EWNNRG+ST HAI+I+ +SLY+VFWSDLFSDQ+H G +TF+SS LS F 
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHPGLVTFQSSTLSTFI 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LG+SVGYFLADLG+I WLYPSLGGMEYVVHH+LSG+AVAYS+FSGEGQLYTYMVLISE+T
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHTLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TPEINMRWYLDTAGMKRS  YL+NG++IFFAWL++
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIA 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085343|emb|CBI29075.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/206 (81%), Positives = 190/206 (92%)

Query: 10  AIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQ 69
           AIK+YQNQA+ LVK+Y++ADPFIPYTSIL+GL ACK+VYDLTQLISTFYFK+Y GLTKIQ
Sbjct: 2   AIKAYQNQAEQLVKDYLLADPFIPYTSILSGLFACKMVYDLTQLISTFYFKSYAGLTKIQ 61

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
           R+EWNNR +STVHA FI ALSLY+VFWSDLFSD +  G +TFRSS LS FGLGVSVGYFL
Sbjct: 62  RIEWNNRSMSTVHAFFIAALSLYFVFWSDLFSDHRLAGLVTFRSSPLSTFGLGVSVGYFL 121

Query: 130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWY 189
           AD+GMIFWLYPSLGG+EY+VHHSLS IAVAY+M SGEGQLYTYMVLISEVTTPEINMRWY
Sbjct: 122 ADIGMIFWLYPSLGGIEYIVHHSLSAIAVAYAMMSGEGQLYTYMVLISEVTTPEINMRWY 181

Query: 190 LDTAGMKRSTTYLVNGVIIFFAWLVS 215
           LDTAGMKRS+ YL+NG++IFF WLV+
Sbjct: 182 LDTAGMKRSSAYLINGIVIFFGWLVA 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550713|ref|XP_002516405.1| conserved hypothetical protein [Ricinus communis] gi|223544440|gb|EEF45960.1| conserved hypothetical protein [Ricinus communis]

 Score =  356 bits (914), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/215 (78%), Positives = 191/215 (88%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           M +S++TV  IKSYQ+QAQVLVKNY++A PFIPYTS+L GL+A KV YDL+QLISTFY K
Sbjct: 1   MTVSKETVMTIKSYQSQAQVLVKNYLLASPFIPYTSVLGGLVASKVAYDLSQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AY GLTK+QR+EWNNRG+S++HAIFITA SLY+VFWSDLFSDQ  T  +T RSS LS FG
Sbjct: 61  AYAGLTKMQRIEWNNRGMSSIHAIFITAASLYFVFWSDLFSDQLPTDLVTLRSSPLSIFG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMI W YPSLGGMEYV+HHSLS IAVAYSMFSGEGQLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIIWFYPSLGGMEYVIHHSLSAIAVAYSMFSGEGQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TP+INMRWYLDTAGMKRS  YL+NGV+IFFAWL++
Sbjct: 181 TPKINMRWYLDTAGMKRSIAYLINGVLIFFAWLIA 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136440|ref|XP_002322330.1| predicted protein [Populus trichocarpa] gi|222869326|gb|EEF06457.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (912), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 167/215 (77%), Positives = 186/215 (86%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MAMS +T  AIKSYQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAMSTETAMAIKSYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
            YNGLTKIQR+EWNNRG+ST+HA+FITA+SLY+VFWSDLFSD QHTG +T RSS  S  G
Sbjct: 61  TYNGLTKIQRIEWNNRGMSTIHAVFITAMSLYFVFWSDLFSDHQHTGIVTLRSSQFSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVSVGYF ADLGMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSVGYFFADLGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGEMQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TPEINMRWYLDTAG KRS  YL+NG+ IF AWL++
Sbjct: 181 TPEINMRWYLDTAGHKRSAAYLINGLAIFLAWLMA 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115498|ref|XP_002332149.1| predicted protein [Populus trichocarpa] gi|222875199|gb|EEF12330.1| predicted protein [Populus trichocarpa]

 Score =  355 bits (910), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 165/215 (76%), Positives = 189/215 (87%)

Query: 1   MAMSEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFK 60
           MA+S +TV AIK+YQNQA+ LVKNY++ADPFIPYTS+L G+ ACKV YDLTQLISTFY K
Sbjct: 1   MAVSTETVMAIKTYQNQAEALVKNYLLADPFIPYTSVLGGIFACKVAYDLTQLISTFYIK 60

Query: 61  AYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFG 120
           AYNGLTK+QR+EWNNRG+ST+HAIFITA+SLY+VFWSDLFSDQ+HTG +T RSS LS  G
Sbjct: 61  AYNGLTKLQRIEWNNRGMSTIHAIFITAMSLYFVFWSDLFSDQRHTGLVTLRSSQLSIVG 120

Query: 121 LGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVT 180
           LGVS+GYF  D GMIF  YP+LGG EYV+HHSLS IAVAYSM SGE QLYTYM LISEVT
Sbjct: 121 LGVSIGYFFVDFGMIFLYYPTLGGKEYVIHHSLSTIAVAYSMLSGELQLYTYMCLISEVT 180

Query: 181 TPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           TPEINMRWYLDTAG+KRS  YL+NG+ IF AWL++
Sbjct: 181 TPEINMRWYLDTAGLKRSAAYLINGLAIFLAWLMA 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851934|ref|XP_002893848.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata] gi|297339690|gb|EFH70107.1| hypothetical protein ARALYDRAFT_473644 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 160/212 (75%), Positives = 184/212 (86%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+ALSLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISALSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           IN+RWYLDTAGMK+S  Y+VNGV IF AWLV+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397885|ref|NP_564377.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|79319015|ref|NP_001031121.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|16604308|gb|AAL24160.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|20466069|gb|AAM19956.1| At1g31300/T19E23_12 [Arabidopsis thaliana] gi|332193216|gb|AEE31337.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gi|332193217|gb|AEE31338.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/212 (75%), Positives = 184/212 (86%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           IN+RWYLDTAGMK+S  Y+VNGV IF AWLV+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423958|dbj|BAH19941.1| AT1G31300 [Arabidopsis thaliana]

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/212 (74%), Positives = 183/212 (86%)

Query: 4   SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
           S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
            LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
           S+GYFLADLGMIF  YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct: 125 SIGYFLADLGMIFRKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
           IN+RWYLDTAGMK+S  Y+VNGV IF AWLV+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2197480	278	AT1G31300 "AT1G31300" [Arabido	0.986	0.762	0.75	4.3e-86
TAIR|locus:504955499	268	AT4G19645 "AT4G19645" [Arabido	0.953	0.764	0.723	1.1e-80
TAIR|locus:2122814	266	AT4G10360 "AT4G10360" [Arabido	0.837	0.676	0.5	1.2e-47
ZFIN|ZDB-GENE-041010-90	264	tmem56b "transmembrane protein	0.725	0.590	0.272	2e-16
ZFIN|ZDB-GENE-090402-1	276	tmem56a "transmembrane protein	0.646	0.503	0.320	2.3e-16
ZFIN|ZDB-GENE-070912-350	263	si:dkey-10f21.4 "si:dkey-10f21	0.669	0.547	0.315	2.9e-16
UNIPROTKB|F1NSV0	261	TMEM56 "Uncharacterized protei	0.716	0.590	0.263	5.4e-15
MGI|MGI:1923195	276	Tmem56 "transmembrane protein	0.786	0.612	0.237	3.8e-14
RGD|1563041	263	Tmem56 "transmembrane protein	0.795	0.650	0.252	6.2e-14
UNIPROTKB|Q96MV1	263	TMEM56 "Transmembrane protein	0.655	0.536	0.282	1.3e-13

TAIR|locus:2197480 AT1G31300 "AT1G31300" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 159/212 (75%), Positives = 184/212 (86%)

Query:     4 SEQTVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYN 63
             S QT+ AIKSY +QAQ LVKNY++ADPFIPYTS+L G+  CKVVYDL   IS  + K Y 
Sbjct:     5 SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query:    64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
              LTKIQR+EWNNRGISTVHAIFI+A+SLY+VFWSDLFSD+ H   + FRSS LS+ GLG+
Sbjct:    65 ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             S+GYFLADLGMIFW YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISE+TTPE
Sbjct:   125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query:   184 INMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
             IN+RWYLDTAGMK+S  Y+VNGV IF AWLV+
Sbjct:   185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:504955499 AT4G19645 "AT4G19645" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 149/206 (72%), Positives = 179/206 (86%)

Query:    11 IKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQR 70
             IKSYQNQA+  V++Y++ADPF+PYTS+L G+  CK+VYDLT+L S+ + K+Y+ LTKI+R
Sbjct:     3 IKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKIKR 62

Query:    71 MEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPIT-FRSSWLSNFGLGVSVGYFL 129
             +EWNNRGISTVHAIFI+ ++LY+ F+SDLFSDQ+    +T FR+S LS FGLGVSVGYFL
Sbjct:    63 IEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGYFL 122

Query:   130 ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWY 189
             ADLGMIFWLYPSLGG EY++HH LSG AVAYS+FSGE QLYTYMVLISEVTTPEIN+RWY
Sbjct:   123 ADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLRWY 182

Query:   190 LDTAGMKRSTTYLVNGVIIFFAWLVS 215
             LD AG+KRS  YLVNGV IFFAWL +
Sbjct:   183 LDIAGLKRSKAYLVNGVAIFFAWLTA 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2122814 AT4G10360 "AT4G10360" [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 90/180 (50%), Positives = 121/180 (67%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95
             SI +G L CK+VYDLT+ IS   F  Y  L    RMEWNNRG ST HA+F +  S+Y++ 
Sbjct:    20 SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79

Query:    96 WSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSG 155
              SD F +  H   +   ++ LS   +G+S+GYFLADL MIFW +P+LGG+EYV HH LS 
Sbjct:    80 ISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSM 139

Query:   156 IAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS 215
              A+  S+ SG+ Q Y ++VL+SE TTP +N+RWYLD +G K S  Y +NG+ +F  WLV+
Sbjct:   140 FAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVA 199

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041010-90 tmem56b "transmembrane protein 56b" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 45/165 (27%), Positives = 84/165 (50%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             ++ ++S+ + + Y  L   +  +WN+R +STVHA+ I  L   Y+ W D   D  +  P+
Sbjct:    23 VSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHAL-IVGLFCLYILWYD---DAVNEDPV 78

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
              +    L    + ++ GY   DL ++   + ++G + +V HH  +  A  Y +  G    
Sbjct:    79 -WGDPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAALYAYGYVLTRGVLPY 137

Query:   170 YTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV-NGV---IIFF 210
             +    LISE++TP +N RW+ +     R+   +V NG+   ++FF
Sbjct:   138 FANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFF 182

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-090402-1 tmem56a "transmembrane protein 56a" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 49/153 (32%), Positives = 84/153 (54%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVS 124
             LT  Q++EWN+R +ST+HA+ +    LY +F+ +  +     G  T     L    + ++
Sbjct:    54 LTHKQKIEWNSRTVSTLHALLVGLFCLYILFFDEAVNQDPVWGDPT-----LVKINVSIT 108

Query:   125 VGYFL-ADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL--YTYMVLISEVTT 181
              GY + ADL +IF+ + ++G   +V+HH L+ +  AY    G+G L  +    L++E +T
Sbjct:   109 TGYLISADLLLIFYYWRAIGDKFFVIHH-LAAL-YAYYYVLGQGMLPYFANFRLLAEFST 166

Query:   182 PEINMRWYLDTAGM-KRSTTYLVNGVI---IFF 210
             P +N RW+ +  G  K S   + NGV+   +FF
Sbjct:   167 PCVNQRWFFEVLGYPKSSRPNMANGVLMAAVFF 199

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-350 si:dkey-10f21.4 "si:dkey-10f21.4" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 48/152 (31%), Positives = 80/152 (52%)

Query:    65 LTKIQRMEWNNRGISTVHAIFITALSLY-YVFWSDLFSDQQHTGPITFRSSWLSNFGLGV 123
             L+  Q+ EWN+R +STVHA+ +    LY Y+F   +  D     P+ +  + L    + V
Sbjct:    41 LSPTQKTEWNSRAVSTVHALVVGLFCLYIYIFDESIQKD-----PV-WGDATLVKLNVAV 94

Query:   124 SVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPE 183
             + GY ++DL ++F  + S+G   +V+HH  +  A  Y +  G    +    L+SE +TP 
Sbjct:    95 TSGYLMSDLLLMFTSWESIGEKYFVIHHFAALYAYYYVLSQGILPYFANFRLLSEFSTPF 154

Query:   184 INMRWYLDTAGM-KRSTTYLVNGVIIFFAWLV 214
             +N RW+    G  K S   L+NGV + F + +
Sbjct:   155 VNQRWFFHMLGYHKLSKPSLLNGVAMAFTFFL 186

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1NSV0 TMEM56 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 44/167 (26%), Positives = 89/167 (53%)

Query:    50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPI 109
             L+  +ST     ++ L++ +++EWN+R +ST HA+ +    LY + + +  +     G  
Sbjct:    25 LSSWVSTRITPGFSNLSQKRKIEWNSRTVSTFHALVVGGFCLYILLYDEAVNADHLWGDP 84

Query:   110 TFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQL 169
             +     +    + ++ GY ++DL +I   + ++G   +V+HH L+ +   Y + S +G L
Sbjct:    85 S-----IVKLNIAITTGYLISDLLLIICYWKAIGDKFFVIHH-LAALYAYYFVLS-KGLL 137

Query:   170 YTY--MVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGV---IIFF 210
               +    L++E +TP +N RW+ +  G  K S   ++NGV   ++FF
Sbjct:   138 AYFGNFRLLAEFSTPFVNQRWFFEVLGYPKSSKANMINGVLMTVVFF 184

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1923195 Tmem56 "transmembrane protein 56" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 44/185 (23%), Positives = 96/185 (51%)

Query:    36 SILAGLLACKVVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITALS 90
             +++  + +  VV+ +     +++F A     YN L+  +++EWN+R +ST H++ +    
Sbjct:    20 AVICTVCSSFVVFQILFHFVSYWFSARVSSGYNSLSIDKKIEWNSRVVSTCHSLLVGIFG 79

Query:    91 LYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVH 150
             LY  F    F +   T P+    +++ N  +  + GY ++DL +I + +  +G   +++H
Sbjct:    80 LYLFF----FDEATITDPLWGDPTYV-NINIATASGYLISDLLIILFNWKVIGDKFFIIH 134

Query:   151 HSLSGIAVAYSMFSGEGQLY-TYMVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGV-- 206
             H  +G+   Y + +     Y     L++E+++P +N RW+ +     K S   ++NG+  
Sbjct:   135 HC-AGLTAYYFVLTTGALAYIANFRLLAELSSPFVNQRWFFEALKYPKFSKANVINGILM 193

Query:   207 -IIFF 210
              ++FF
Sbjct:   194 TVVFF 198

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1563041 Tmem56 "transmembrane protein 56" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 47/186 (25%), Positives = 91/186 (48%)

Query:    35 TSILAGLLACK-VVYDLTQLISTFYFKA-----YNGLTKIQRMEWNNRGISTVHAIFITA 88
             T+++ G + C  V + L     + +F A     YN L+  +++EWN+R +ST H++ +  
Sbjct:     5 TNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTEKKIEWNSRVVSTCHSMLVGI 64

Query:    89 LSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYV 148
               LY  F    F +     P+    S L    +  + GY ++DL +I + +  +G   ++
Sbjct:    65 FGLYLFF----FDEATIADPLWGDPS-LVKINISTASGYLISDLLIILFNWKVIGDKFFI 119

Query:   149 VHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGM-KRSTTYLVNGV- 206
             +HH    IA  + +  G         L++E+++P +N RW+ +     K S   ++NG+ 
Sbjct:   120 IHHCAGLIAYYFVLKIGVLAYIANFRLLAELSSPFVNQRWFFEVLKYPKFSKVNVINGIL 179

Query:   207 --IIFF 210
               ++FF
Sbjct:   180 MTVVFF 185

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96MV1 TMEM56 "Transmembrane protein 56" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 44/156 (28%), Positives = 84/156 (53%)

Query:    62 YNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGL 121
             +N L+  +++EWN+R +ST H++ +    LY +F   LF +     P+    S L+N  +
Sbjct:    38 FNSLSFKKKIEWNSRVVSTCHSLVVGIFGLY-IF---LFDEATKADPLWGGPS-LANVNI 92

Query:   122 GVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMV---LISE 178
              ++ GY ++DL +I   +  +G   +++HH  S    AY +    G L  Y+    L++E
Sbjct:    93 AIASGYLISDLSIIILYWKVIGDKFFIMHHCAS--LYAYYLVLKNGVL-AYIGNFRLLAE 149

Query:   179 VTTPEINMRWYLDTAGM-KRSTTYLVNGV---IIFF 210
             +++P +N RW+ +     K S   ++NG+   ++FF
Sbjct:   150 LSSPFVNQRWFFEALKYPKFSKAIVINGILMTVVFF 185

GO:0016021 "integral to membrane" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
smart00724	205	smart00724, TLC, TRAM, LAG1 and CLN8 homology doma	2e-20
pfam03798	198	pfam03798, TRAM_LAG1_CLN8, TLC domain	9e-15

>gnl|CDD|214789 smart00724, TLC, TRAM, LAG1 and CLN8 homology domains

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 70  RMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFL 129
             E +NR +S +H++     +LY   W    SD +   PI    S L+ F    S+GYF+
Sbjct: 3   FNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFI 58

Query: 130 ADLGMIFWLYPSLGGM--EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMR 187
            DL  +            E +VHH  + + ++ S      +L   ++L+ E++ P +++R
Sbjct: 59  HDLVALLLFQDLKRKDFKEMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLR 118

Query: 188 WYLDTAGMKRSTTYLVNGVIIFFAWLV 214
             L+ AG K+S  Y VN V+    + V
Sbjct: 119 KLLNYAGRKKSLLYDVNFVLFAVVFFV 145

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains. Length = 205

>gnl|CDD|217735 pfam03798, TRAM_LAG1_CLN8, TLC domain

 Score = 69.2 bits (170), Expect = 9e-15
 Identities = 35/148 (23%), Positives = 73/148 (49%), Gaps = 8/148 (5%)

Query: 72  EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ-----HTGPITFRSSWLSNFGLGVSVG 126
           ++N RG+S VH +    L LY +     F +       +   I   +S L  F   + +G
Sbjct: 1   KFNERGVSLVHYLVSGILGLYVLLSEPWFWNPTWLWYPYPDRILGGTSALVKFYYLIQLG 60

Query: 127 YFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINM 186
           YFL DL ++ +        E ++HH ++ + +++S F    ++   ++L+ E++ P +++
Sbjct: 61  YFLHDLLVLLFYEKRRKW-EMLLHHIITLLLISFSYFYNFTRVGLLVLLLHELSDPFLHL 119

Query: 187 RWYLDTAGMKRSTTYLVNGVIIFFAWLV 214
           R +L+  G K+S   L   V+   ++ +
Sbjct: 120 RKFLNYLGKKKSCDVLF--VLFLVSFFL 145

Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG4561	281	consensus Uncharacterized conserved protein, conta	99.97
PF03798	198	TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TL	99.94
smart00724	205	TLC TRAM, LAG1 and CLN8 homology domains. Protein	99.93
KOG4474	253	consensus Uncharacterized conserved protein [Funct	99.93
COG5058	395	LAG1 Protein transporter of the TRAM (translocatin	96.82
KOG1607	318	consensus Protein transporter of the TRAM (translo	91.55

>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.97  E-value=2.8e-34  Score=244.72  Aligned_cols=199  Identities=35%  Similarity=0.577  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHH---HHhHhhhhhhhcCCCcchhhhhh-hhhhHHHHHHHH
Q 028013           11 IKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVHAIFI   86 (215)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~s~~~~~~i~~ls---~~ls~~l~k~y~~L~~~~k~~w~-~r~vS~vHA~v~   86 (215)
                      ++++-.+-++++.+...++++.........+++|...|.+.   +..+.-..++|.+++++.|++|| +|+||++|++++
T Consensus         6 ~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~hslv~   85 (281)
T KOG4561|consen    6 LPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVHSLVS   85 (281)
T ss_pred             CCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeehHhhh
Confidence            34455566677777778888888899999999999999988   66666667899999999999999 999999999999


Q ss_pred             HHHHHHHHHhcCCCC-CCCCCCCcccCCChhhHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHhhcC
Q 028013           87 TALSLYYVFWSDLFS-DQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYSMFSG  165 (215)
Q Consensus        87 ~~~al~~l~~~~~~~-~~~~~d~i~~~~s~~~~~~~~is~GYFi~Dl~~~~~~~~~~~~~~~llHH~~~l~~~~~~l~~~  165 (215)
                      +  ++|+++.++.++ |+...+...+..+......    .|||++|+..+.++++..+|.+|++||++++......+..|
T Consensus        86 ~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~~~~~  159 (281)
T KOG4561|consen   86 S--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCLLRRG  159 (281)
T ss_pred             c--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheeeEecC
Confidence            8  888888876554 4444333323333322222    56999999866667778999999999999844333344678


Q ss_pred             CchhHHHHHHHHhhchhhHHHHHHHHHcCCCCChhHHHHHHHHHHHHhcC
Q 028013          166 EGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLVS  215 (215)
Q Consensus       166 ~~~~~~~~~Ll~ElSTPFLnlRw~L~~~G~~~s~~y~iNg~l~~~tFfva  215 (215)
                      +++++++.+|++|+||||+|+||+|+++|+++|++|++||++++++||++
T Consensus       160 ~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~  209 (281)
T KOG4561|consen  160 VGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVA  209 (281)
T ss_pred             ccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999975

>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices

Probab=99.94  E-value=1.8e-26  Score=187.65  Aligned_cols=142  Identities=34%  Similarity=0.615  Sum_probs=120.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHHHHHHHHHHHHhcccCCC-hhHHHH
Q 028013           72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH  150 (215)
Q Consensus        72 ~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFi~Dl~~~~~~~~~~~~-~~~llH  150 (215)
                      ||++|++|++|+++++.+|++++..++.+.++..+++. .++++..+...++++|||++|++++..+.++.++ .++++|
T Consensus         1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H   79 (198)
T PF03798_consen    1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH   79 (198)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence            69999999999999999999999986422122222333 4556678889999999999999999986655443 899999


Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHhhchhhHHHHHHHHHc-CC-CCChhHHHHHHHHHHHHhc
Q 028013          151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTA-GM-KRSTTYLVNGVIIFFAWLV  214 (215)
Q Consensus       151 H~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~-G~-~~s~~y~iNg~l~~~tFfv  214 (215)
                      |++++.++..+...+.+++++..+++.|+||||+|+||++++. |+ ++++.+.+|++++.++|++
T Consensus        80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~  145 (198)
T PF03798_consen   80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFV  145 (198)
T ss_pred             HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            9999999988887888999999999999999999999999999 77 6889999999999999985

Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane

>smart00724 TLC TRAM, LAG1 and CLN8 homology domains

Probab=99.93  E-value=1.3e-25  Score=184.88  Aligned_cols=143  Identities=29%  Similarity=0.356  Sum_probs=124.1

Q ss_pred             chhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHHHHHHHHHHHHhcccCC--Ch
Q 028013           68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM  145 (215)
Q Consensus        68 ~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFi~Dl~~~~~~~~~~~--~~  145 (215)
                      +|+.||++|++|.+||++++..+++....   +.++..+||. .+.++..+...++++|||++|++++..+.+..+  ++
T Consensus         1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~   76 (205)
T smart00724        1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK   76 (205)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence            47899999999999999999999876653   1222234565 677999999999999999999999986654443  79


Q ss_pred             hHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhhchhhHHHHHHHHHcCCCCChhHHHHHHHHHHHHhc
Q 028013          146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLV  214 (215)
Q Consensus       146 ~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~G~~~s~~y~iNg~l~~~tFfv  214 (215)
                      ++++||++++.++..+...+....+....++.|+||||+|+||+++++|+++++++.+|+++++++|++
T Consensus        77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~  145 (205)
T smart00724       77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFV  145 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH
Confidence            999999999999988887888888888899999999999999999999999999999999999999986

Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.

>KOG4474 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.93  E-value=1.9e-25  Score=186.97  Aligned_cols=147  Identities=22%  Similarity=0.273  Sum_probs=131.0

Q ss_pred             CCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccCCChhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 028013           64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG  143 (215)
Q Consensus        64 ~L~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFi~Dl~~~~~~~~~~~  143 (215)
                      .+++.+|.+|.|+.||++||++++.++.+++..+    ++...||+ ...+..+..+.++|+|||++|+++|..+.....
T Consensus        37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~----~~~~~~~~-~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~  111 (253)
T KOG4474|consen   37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD----PEMVDDPI-TYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL  111 (253)
T ss_pred             eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC----cccccCHH-HHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence            4677779999999999999999999999999874    46667777 446888999999999999999999998765556


Q ss_pred             ChhHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhhchhhHHHHHHHHHcCCCCC-hhHHHHHHHHHHHHhcC
Q 028013          144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRS-TTYLVNGVIIFFAWLVS  215 (215)
Q Consensus       144 ~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~G~~~s-~~y~iNg~l~~~tFfva  215 (215)
                      .+++++||++++.++..+++++++..++.+.+++|+|+||+|+|.+++.+|.+++ +.++++-.+++++||++
T Consensus       112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~f  184 (253)
T KOG4474|consen  112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFF  184 (253)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHH
Confidence            7899999999999999999999988899999999999999999999999999654 46999999999999863

>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]

Probab=96.82  E-value=0.00097  Score=58.45  Aligned_cols=129  Identities=12%  Similarity=0.078  Sum_probs=87.5

Q ss_pred             CcchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCC---CCCCCC-CcccCCChhhHHHHHHHHHHHHHHHHHHHHh--c
Q 028013           66 TKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFS---DQQHTG-PITFRSSWLSNFGLGVSVGYFLADLGMIFWL--Y  139 (215)
Q Consensus        66 ~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~---~~~~~d-~i~~~~s~~~~~~~~is~GYFi~Dl~~~~~~--~  139 (215)
                      ++++..+++...-+..--.++++.|+|++..++.|.   +++.++ |+ +..++.-...-.+-.||.+....+..++  .
T Consensus       150 s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqaafw~qQa~ilvLqlEk  228 (395)
T COG5058         150 SEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQAAFWAQQACILVLQLEK  228 (395)
T ss_pred             CHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHHHHHHHHHhhheeeecc
Confidence            555557889999999999999999999998876553   122222 33 5556777777778899999986555443  3


Q ss_pred             ccCCChhHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhhchhhHHHHHHHHHcCC
Q 028013          140 PSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGM  195 (215)
Q Consensus       140 ~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~G~  195 (215)
                      |+..-.+++.||++.++-...+...++.---......+.+|-|||.+...+.-.|-
T Consensus       229 prkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~  284 (395)
T COG5058         229 PRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS  284 (395)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc
Confidence            34445789999998876554442222111111233588999999999988877665

>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.55  E-value=3.9  Score=36.24  Aligned_cols=136  Identities=13%  Similarity=0.100  Sum_probs=83.2

Q ss_pred             hhhcCCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCC---CCCCcccCCChhhHHHHHHHHHHHHHHHHHHH
Q 028013           60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ---HTGPITFRSSWLSNFGLGVSVGYFLADLGMIF  136 (215)
Q Consensus        60 k~y~~L~~~~k~~w~~r~vS~vHA~v~~~~al~~l~~~~~~~~~~---~~d~i~~~~s~~~~~~~~is~GYFi~Dl~~~~  136 (215)
                      ..++.-+++++.+.....=..+-=..+.+.|++++..++-+.+..   .+-|. ....+.....-.+-+|+-+.-+....
T Consensus        76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~  154 (318)
T KOG1607|consen   76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALF  154 (318)
T ss_pred             HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence            344444455556677777777778888889999888743222211   11122 33355566667778898888887776


Q ss_pred             HhcccCCChhHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHhhchhhHHHHHHHHHcCCC
Q 028013          137 WLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMK  196 (215)
Q Consensus       137 ~~~~~~~~~~~llHH~~~l~~~~~~l~~~~~~~~~~~~Ll~ElSTPFLnlRw~L~~~G~~  196 (215)
                      ....+..-.++++||++.++-...+...+..-.-.....+...|-++|-+..+++-.|.+
T Consensus       155 ~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~  214 (318)
T KOG1607|consen  155 LDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE  214 (318)
T ss_pred             hhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH
Confidence            544333346799999998765544432222111122344778888999888777665554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00