Citrus Sinensis ID: 028023

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS
ccccccccccccccccccEEEEccccEEEcccccEEEEEEEcccccEEEEccEEEEEEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEEcccccEEEEEEEEccccccEEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEEccccccccccccEEEEEEEccccccccccccccccccccEEEEEcEEEEEEcccccccccc
cccHHHHHccccccccccEEEEccccEEEEcccEEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEccEccccEEEEccccHHHccEEEEEEEEccEEEEEEccEEEEEEcccHcccccccccEEEEEccccccHHHccccEEcccccccEEEEEccccccccccccccccc
madpvvqslhqtepikeiaidytpeacthcadsnsitltfdhrggarwrsTTRFLYGTFssliqcpkgntsglNFNIYLSslegdksqdeidfeflgkdktivqtnyyttgtgnreeihdlgfdcsegFHEYVIKWGPDLIQWLIDGKVVrraernegegfpnkpmFLYASVWDashidkarwcgpyvgcdapyvclykdihvpvatavecpcds
madpvvqslhqtepIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFeflgkdktivqTNYYttgtgnreeIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAErnegegfpnkpMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS
MADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS
**************IKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECP***
*ADP***SLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVEC****
MADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS
*ADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAV******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
Q8LDS2333 Probable xyloglucan endot yes no 0.804 0.519 0.362 1e-22
Q38909332 Probable xyloglucan endot no no 0.758 0.490 0.383 3e-22
Q39099296 Xyloglucan endotransgluco no no 0.753 0.547 0.362 1e-21
Q6YDN9295 Xyloglucan endotransgluco N/A no 0.753 0.549 0.346 4e-21
Q9ZV40305 Probable xyloglucan endot no no 0.948 0.668 0.323 7e-21
Q9FI31282 Xyloglucan endotransgluco no no 0.753 0.574 0.346 9e-21
Q40144296 Probable xyloglucan endot N/A no 0.813 0.591 0.331 1e-20
P24806269 Xyloglucan endotransgluco no no 0.758 0.605 0.378 1e-20
P23904237 Beta-glucanase OS=Paeniba N/A no 0.665 0.603 0.373 2e-20
Q8LER3293 Probable xyloglucan endot no no 0.893 0.655 0.308 4e-20
>sp|Q8LDS2|XTH27_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2 Back     alignment and function desciption
 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 23/196 (11%)

Query: 32  DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDE 90
           D  S+ LT D R G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DE
Sbjct: 49  DGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDE 108

Query: 91  IDFEFLGKDKTI---VQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLI 145
           IDFEFLG  +     VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +
Sbjct: 109 IDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFV 168

Query: 146 DGKVVRRAERNEGEG--FPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLY 198
           D   +R  +R    G  FP+KPM LY ++WD S     +W   G   G +   APY+  +
Sbjct: 169 DNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGS-----KWATNGGKYGVNYKYAPYIARF 223

Query: 199 KDIHVPVATAVECPCD 214
            D+         CP D
Sbjct: 224 SDL-----VLHGCPVD 234
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q38909|XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1 Back     alignment and function description
>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1 Back     alignment and function description
>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1 Back     alignment and function description
>sp|Q9ZV40|XTH21_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1 Back     alignment and function description
>sp|Q9FI31|XTH20_ARATH Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1 Back     alignment and function description
>sp|Q40144|XTH1_SOLLC Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1 Back     alignment and function description
>sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2 Back     alignment and function description
>sp|P23904|GUB_PAEMA Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2 Back     alignment and function description
>sp|Q8LER3|XTH7_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
224063955213 predicted protein [Populus trichocarpa] 0.990 1.0 0.837 1e-104
225453754208 PREDICTED: probable xyloglucan endotrans 0.967 1.0 0.809 3e-99
356522658216 PREDICTED: probable xyloglucan endotrans 0.795 0.791 0.748 6e-75
302754174209 hypothetical protein SELMODRAFT_75086 [S 0.925 0.952 0.617 1e-68
302767582209 hypothetical protein SELMODRAFT_86737 [S 0.925 0.952 0.617 8e-67
115450333312 Os03g0117300 [Oryza sativa Japonica Grou 0.925 0.637 0.595 2e-66
125542150312 hypothetical protein OsI_09745 [Oryza sa 0.925 0.637 0.595 3e-66
226503369250 xyloglucan endotransglucosylase/hydrolas 0.948 0.816 0.590 1e-64
357120943255 PREDICTED: probable xyloglucan endotrans 0.920 0.776 0.57 4e-61
242347653235 conserved hypothetical protein [Triticum 0.855 0.782 0.523 5e-56
>gi|224063955|ref|XP_002301319.1| predicted protein [Populus trichocarpa] gi|222843045|gb|EEE80592.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 195/215 (90%), Gaps = 2/215 (0%)

Query: 1   MADPVVQSLHQTEPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFS 60
           MADP +   H+T+PI +IAIDYTPEACTHC +SNSITLT+DHRGGARWRSTTRFLYGTFS
Sbjct: 1   MADPAIH--HETQPINQIAIDYTPEACTHCPESNSITLTYDHRGGARWRSTTRFLYGTFS 58

Query: 61  SLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYTTGTGNREEIHD 120
           SLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYY +GTGNREEIHD
Sbjct: 59  SLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQTNYYASGTGNREEIHD 118

Query: 121 LGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKPMFLYASVWDASHIDK 180
           LGFDCS+ FHEYVIKW P+ I+WLIDGKVVR+ E+ EGEGFP KPMFLYAS+WDAS+I  
Sbjct: 119 LGFDCSDAFHEYVIKWCPNFIEWLIDGKVVRKVEKREGEGFPEKPMFLYASIWDASYICD 178

Query: 181 ARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS 215
           A W GPY+GCDAPYVCLYKDI VPV TAVEC CDS
Sbjct: 179 ATWTGPYMGCDAPYVCLYKDICVPVGTAVECSCDS 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225453754|ref|XP_002273975.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 30-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522658|ref|XP_003529963.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32-like [Glycine max] Back     alignment and taxonomy information
>gi|302754174|ref|XP_002960511.1| hypothetical protein SELMODRAFT_75086 [Selaginella moellendorffii] gi|300171450|gb|EFJ38050.1| hypothetical protein SELMODRAFT_75086 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|302767582|ref|XP_002967211.1| hypothetical protein SELMODRAFT_86737 [Selaginella moellendorffii] gi|300165202|gb|EFJ31810.1| hypothetical protein SELMODRAFT_86737 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|115450333|ref|NP_001048767.1| Os03g0117300 [Oryza sativa Japonica Group] gi|108705866|gb|ABF93661.1| Glycosyl hydrolases family 16 protein, expressed [Oryza sativa Japonica Group] gi|113547238|dbj|BAF10681.1| Os03g0117300 [Oryza sativa Japonica Group] gi|215707152|dbj|BAG93612.1| unnamed protein product [Oryza sativa Japonica Group] gi|222624085|gb|EEE58217.1| hypothetical protein OsJ_09182 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125542150|gb|EAY88289.1| hypothetical protein OsI_09745 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|226503369|ref|NP_001150346.1| xyloglucan endotransglucosylase/hydrolase protein 5 [Zea mays] gi|195638572|gb|ACG38754.1| xyloglucan endotransglucosylase/hydrolase protein 5 precursor [Zea mays] gi|414864391|tpg|DAA42948.1| TPA: xyloglucan endotransglucosylase/hydrolase protein 5 [Zea mays] Back     alignment and taxonomy information
>gi|357120943|ref|XP_003562183.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 31-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242347653|gb|ACS92630.1| conserved hypothetical protein [Triticum aestivum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2059728333 EXGT-A3 "endoxyloglucan transf 0.827 0.534 0.375 7.6e-25
TAIR|locus:2006857332 XTH28 "xyloglucan endotransglu 0.767 0.496 0.377 2.9e-23
TAIR|locus:2053967305 XTH21 "xyloglucan endotransglu 0.827 0.583 0.360 7.8e-23
TAIR|locus:2206335282 XTH17 "xyloglucan endotransglu 0.776 0.592 0.352 2.6e-22
TAIR|locus:2065821296 XTH4 "xyloglucan endotransgluc 0.753 0.547 0.362 2.6e-22
TAIR|locus:2128936269 XTH24 "xyloglucan endotransglu 0.758 0.605 0.384 2.6e-22
TAIR|locus:2118746282 XTH18 "xyloglucan endotransglu 0.762 0.581 0.353 4.3e-22
TAIR|locus:2117189 357 XTH29 "xyloglucan endotransglu 0.748 0.450 0.395 9e-22
TAIR|locus:2118751277 XTH19 "xyloglucan endotransglu 0.832 0.646 0.339 9e-22
TAIR|locus:2162652282 XTH20 "xyloglucan endotransglu 0.753 0.574 0.351 1.5e-21
TAIR|locus:2059728 EXGT-A3 "endoxyloglucan transferase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 75/200 (37%), Positives = 109/200 (54%)

Query:    32 DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEG-DKSQDE 90
             D  S+ LT D R G+ + S   +L+G FS+ I+ P   T+G+    Y+S+ +  +K+ DE
Sbjct:    49 DGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDE 108

Query:    91 IDFEFLG--KDKTI-VQTNYYTTGT--GNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLI 145
             IDFEFLG  ++K   VQTN Y  G+    REE ++L FD +E FH+Y I W    I + +
Sbjct:   109 IDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFV 168

Query:   146 DGKVVRRAERNEGEG--FPNKPMFLYASVWDASHIDKARWC--GPYVGCD---APYVCLY 198
             D   +R  +R    G  FP+KPM LY ++WD S     +W   G   G +   APY+  +
Sbjct:   169 DNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGS-----KWATNGGKYGVNYKYAPYIARF 223

Query:   199 KDI--H-VPVATAVECP-CD 214
              D+  H  PV    + P CD
Sbjct:   224 SDLVLHGCPVDPIEQFPRCD 243
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA;ISS;IDA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2006857 XTH28 "xyloglucan endotransglucosylase/hydrolase 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053967 XTH21 "xyloglucan endotransglucosylase/hydrolase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206335 XTH17 "xyloglucan endotransglucosylase/hydrolase 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065821 XTH4 "xyloglucan endotransglucosylase/hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128936 XTH24 "xyloglucan endotransglucosylase/hydrolase 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118746 XTH18 "xyloglucan endotransglucosylase/hydrolase 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117189 XTH29 "xyloglucan endotransglucosylase/hydrolase 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118751 XTH19 "xyloglucan endotransglucosylase/hydrolase 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162652 XTH20 "xyloglucan endotransglucosylase/hydrolase 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.73LOW CONFIDENCE prediction!
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 1e-48
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-45
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 2e-36
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 2e-28
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 3e-28
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 4e-17
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 8e-14
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 1e-09
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 0.002
cd02179321 cd02179, GH16_beta_GRP, beta-1,3-glucan recognitio 0.004
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information 
 Score =  156 bits (397), Expect = 1e-48
 Identities = 64/146 (43%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 32  DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEI 91
               +TLT D   G+ ++S   +LYG F + I+    N +G+    YLSS  GD   DEI
Sbjct: 17  SGGGLTLTLDKYTGSGFKSKFYYLYGRFEARIK--AANGAGVVTAFYLSSPGGDDH-DEI 73

Query: 92  DFEFLGKDKTIVQTNYYTTGTGN-REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVV 150
           DFEFLG D   VQTN YT G G  RE+   L FD +  FH Y I W PD I W +DG  V
Sbjct: 74  DFEFLGNDTGQVQTNVYTNGKGGRREQRFPLWFDPTADFHTYAILWTPDKIVWYVDGVPV 133

Query: 151 RRAERNEGEGFPNKPMFLYASVWDAS 176
           R  + N+G  +P  PM LY S+W   
Sbjct: 134 RTLKNNDGGAYPQTPMNLYVSLWPGG 159

Length = 174
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185688 cd02179, GH16_beta_GRP, beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 100.0
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 100.0
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 100.0
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 100.0
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.96
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.81
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.71
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 94.29
PF10287235 DUF2401: Putative TOS1-like glycosyl hydrolase (DU 94.2
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 93.31
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 92.07
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 89.74
smart00560133 LamGL LamG-like jellyroll fold domain. 86.29
KOG1834 952 consensus Calsyntenin [Extracellular structures] 85.94
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 82.45
cd00152201 PTX Pentraxins are plasma proteins characterized b 80.51
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-47  Score=326.39  Aligned_cols=189  Identities=34%  Similarity=0.600  Sum_probs=165.9

Q ss_pred             CceeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEE
Q 028023           15 IKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFE   94 (215)
Q Consensus        15 ~~~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE   94 (215)
                      ...|.|.|++.|+++..+|..|.|+||+++|++|+||+.|+|||||+|||+|++.++|+||||||++.+ |+.++|||||
T Consensus         7 ~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~-wp~~~EID~E   85 (263)
T cd02176           7 DENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQG-PDNHDEIDFE   85 (263)
T ss_pred             cccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCC-CCCCCeEEEE
Confidence            457889999999999877889999999999999999999999999999999998657999999999875 8889999999


Q ss_pred             eeCCC---CceEEEEEEeCCCCCCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC--CCCCC-CCccEE
Q 028023           95 FLGKD---KTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFL  168 (215)
Q Consensus        95 ~~g~~---~~~~~~n~~~~~~~~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~--~~~~P-~~P~~l  168 (215)
                      ++|++   ++.+|+|+|..+.+++++.+.++++++++||+|+|+|+|++|+|||||++++++.+.+  +..+| ++||+|
T Consensus        86 ~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~Pm~l  165 (263)
T cd02176          86 FLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGV  165 (263)
T ss_pred             EecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccceEEE
Confidence            99986   5789999999888778888888899999999999999999999999999999998643  46789 599999


Q ss_pred             EEEeecCCCCCCCccccCCCCCCCCEEEEEeEEEEe
Q 028023          169 YASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVP  204 (215)
Q Consensus       169 ~ln~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~  204 (215)
                      ++|+|+++++++..-....+.+.+||+|.|++++|.
T Consensus       166 ~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~  201 (263)
T cd02176         166 YASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLD  201 (263)
T ss_pred             EEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEe
Confidence            999998886442210113577999999999999995

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information
>KOG1834 consensus Calsyntenin [Extracellular structures] Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 2e-21
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 2e-21
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 2e-21
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 2e-21
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 2e-21
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 3e-21
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 8e-21
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 8e-21
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 1e-20
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 1e-20
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 7e-20
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 1e-19
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 2e-19
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 3e-19
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 4e-19
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 7e-19
1ajo_A 214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 2e-09
3axd_A249 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 7e-07
3hr9_A241 The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta 1e-06
3h0o_A240 The Importance Of Ch-Pi Stacking Interactions Betwe 1e-06
1mve_A243 Crystal Structure Of A Natural Circularly-Permutate 2e-06
1zm1_A241 Crystal Structures Of Complex F. Succinogenes 1,3-1 2e-06
2r49_A241 Mutational And Structural Studies Of E85i Reveal Th 4e-06
3atg_A256 Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cel 4e-04
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure 
Iteration: 1

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/150 (37%), Positives = 77/150 (51%), Gaps = 7/150 (4%)
Query: 46  ARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFLGKDKTIVQT 105
           A +RST  + YG +   ++  K      +F  Y     G +  DEID EFLGKD T VQ 
Sbjct: 4   AEYRSTNIYGYGLYEVSMKPAKNTGIVSSFFTYTGPAHGTQ-WDEIDIEFLGKDTTKVQF 62
Query: 106 NYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPNKP 165
           NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG +   A  N     P+ P
Sbjct: 63  NYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLKHTATAN----IPSTP 118
Query: 166 MFLYASVWDASHIDKARWCGPYVGCDAPYV 195
             +  ++W+ + +D   W G Y G +  Y 
Sbjct: 119 GKIMMNLWNGTGVDD--WLGSYNGANPLYA 146
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-127 Length = 214 Back     alignment and structure
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form Length = 249 Back     alignment and structure
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D- Glucanase F40i Mutant Length = 241 Back     alignment and structure
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between Carbohydrate And Aromatic Residues In Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase Length = 240 Back     alignment and structure
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From Fibrobacter Succinogenes Length = 243 Back     alignment and structure
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes 1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose Length = 241 Back     alignment and structure
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The Flexible Loops Of Fibrobacter Succinogenes 1,3-1,4-beta-d- Glucanaseglucanase Length = 241 Back     alignment and structure
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans Length = 256 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 4e-47
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 9e-47
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 1e-46
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 1e-45
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 2e-45
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 4e-45
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 3e-41
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 2e-40
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 7e-35
1ajo_A 214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 1e-19
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 5e-13
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 1e-10
1ups_A 420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 1e-10
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 5e-10
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 1e-09
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 2e-09
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 7e-09
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 8e-09
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 2e-08
3rq0_A269 Glycosyl hydrolases family protein 16; structural 1e-07
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 2e-07
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 4e-07
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 1e-06
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 7e-06
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 8e-04
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
 Score =  153 bits (388), Expect = 4e-47
 Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 10/172 (5%)

Query: 45  GARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGD-KSQDEIDFEFLGKDKTIV 103
            A +RST  + YG +   ++  K   +G+  + +  +        DEID EFLGKD T V
Sbjct: 3   CAEYRSTNIYGYGLYEVSMKPAKN--TGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTKV 60

Query: 104 QTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPN 163
           Q NYYT G G  E++  LGFD S+GFH Y   W P  I+W +DG +            P+
Sbjct: 61  QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGVLK----HTATANIPS 116

Query: 164 KPMFLYASVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVPVATAVECPCDS 215
            P  +  ++W+ + +D   W G Y G   P    Y  +      +V     S
Sbjct: 117 TPGKIMMNLWNGTGVDD--WLGSYNG-ANPLYAEYDWVKYTSNGSVFWEPKS 165
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Length = 280 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Length = 308 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 100.0
1ups_A 420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 100.0
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 100.0
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 100.0
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 100.0
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.97
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.97
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.83
1ajo_A 214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.82
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 97.52
3u1x_A236 Putative glycosyl hydrolase; glycosyl hydrolysis, 89.13
3h3l_A241 Putative sugar hydrolase; YP_001304206.1, structur 87.45
3hbk_A245 Putative glycosyl hydrolase; YP_001302580.1, WAS d 87.33
4b1m_A185 Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil 84.43
3imm_A201 Putative secreted glycosylhydrolase; YP_001301887. 84.27
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 84.25
3s5q_A214 Putative glycosylhydrolase; concanavalin A-like le 83.06
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
Probab=100.00  E-value=4.5e-47  Score=325.89  Aligned_cols=196  Identities=32%  Similarity=0.528  Sum_probs=163.7

Q ss_pred             CCCceeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCC-CCCCee
Q 028023           13 EPIKEIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGD-KSQDEI   91 (215)
Q Consensus        13 ~~~~~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~-~~~~EI   91 (215)
                      .=.+.|.+.|+++|+++  ++|.|.|++++.+|++|+||+.|+|||||||||+|.++++|+||||||++.+.| +.++||
T Consensus        21 ~f~~~~~~~w~~~Nv~v--~~G~L~L~~~k~tsa~i~Sk~~~~yG~~Ear~Klp~g~~~G~wpAfwl~~~~~~~~~~gEI   98 (274)
T 2uwa_A           21 GFDQGYTNLWGPQHQRV--DQGSLTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEI   98 (274)
T ss_dssp             CHHHHEEEEECGGGEEE--ETTEEEEEECSSCCEEEEEEEEEEEEEEEEEEECCCSCCTTEEEEEEEECTTTSTTSCCEE
T ss_pred             ChhcCccccCCCCCEEE--ECCEEEEEEecCCCCEEEECceEeeEEEEEEEEeCCCCCCcEEEEEEeCCCCCCCCcCCeE
Confidence            33457889999999997  456799999999999999999999999999999999844699999999987554 489999


Q ss_pred             eEEeeCCCC---ceEEEEEEeCCCCC-----CceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCCCCCCCC
Q 028023           92 DFEFLGKDK---TIVQTNYYTTGTGN-----REEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNEGEGFPN  163 (215)
Q Consensus        92 DiE~~g~~~---~~~~~n~~~~~~~~-----~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~~~~~P~  163 (215)
                      |||++|+++   +.+|+|+|..+.++     +++.+.+++++.++||+|+|+|+|++|+|||||++++++.+.++..+|+
T Consensus        99 DIE~lG~~~~~~~~v~tn~~~~g~~~~~~~~~~~~~~l~~d~~~~FHtY~ieWtp~~I~fyVDG~~v~t~~~~~~~~~P~  178 (274)
T 2uwa_A           99 DIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL  178 (274)
T ss_dssp             EEEEECCCTTSCCEEEEEEECTTTTTSSCCCCCEEECCSSCTTSSCEEEEEEECSSEEEEEETTEEEEEEECCCGGGSCC
T ss_pred             EEEEeCCCCCCceEEEEEEeCCCCCCccccCcceEEeCCCCCCCCcEEEEEEEecCeEEEEECCeEEEEEECCcCCCCCC
Confidence            999999875   48999999887653     5566777788899999999999999999999999999998765667999


Q ss_pred             CccEEEEEeecCCCCCCCccccC--CCCCCCCEEEEEeEEEEec---CCccccc
Q 028023          164 KPMFLYASVWDASHIDKARWCGP--YVGCDAPYVCLYKDIHVPV---ATAVECP  212 (215)
Q Consensus       164 ~P~~l~ln~W~~g~~~~g~W~G~--~~~~~~p~~~~~~~v~v~~---~~~~~c~  212 (215)
                      +||+|+||+|.+|++.+.  +|.  .+.+.+||+|+|++|||..   ..+..|.
T Consensus       179 ~P~~l~lnlw~Gg~Wa~~--gG~~~~d~~~~P~~~~v~~v~v~~c~~~~~~~c~  230 (274)
T 2uwa_A          179 RPLWVYGSVWDASSWATE--NGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCN  230 (274)
T ss_dssp             SCEEEEEEEEECTTTTBG--GGTBCCCGGGCCEEEEEEEEEEEEEETTSCTTCC
T ss_pred             CCEEEEEEEEeCCCCccC--CCcccccCCCCCEEEEEEEEEEEeccCCCccccc
Confidence            999999999887764311  132  4557899999999999954   2334575
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3u1x_A Putative glycosyl hydrolase; glycosyl hydrolysis, carbohydrate metabolism,, structural GE joint center for structural genomics, JCSG; HET: MSE PGE; 1.70A {Parabacteroides distasonis} Back     alignment and structure
>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomic center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of U function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A Back     alignment and structure
>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure
>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases, structural genomics, center for structural genomics, JCSG; 1.85A {Parabacteroides distasonis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 2e-41
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 3e-27
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 1e-19
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 6e-18
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 9e-10
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 5e-06
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 6e-06
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  139 bits (352), Expect = 2e-41
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 18/197 (9%)

Query: 32  DSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEI 91
             N I L  D   G  ++S   +L+G FS  ++   G+++G     YLSS   +   DEI
Sbjct: 24  GGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSS--QNSEHDEI 81

Query: 92  DFEFLGKDK---TIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGK 148
           DFEFLG       I+QTN +T G G+RE+   L FD ++ FH Y + W   +I +L+D  
Sbjct: 82  DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDV 141

Query: 149 VVRRAERNEGEG---FPNKPMFLYASVWDASHIDKARWCGPYVGCD---APYVCLYKDIH 202
            +R  +  +  G     N+PM +Y+S+W+A         G     D   AP++  Y+  H
Sbjct: 142 PIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWA---TRGGLEKTDWSKAPFIASYRSFH 198

Query: 203 V----PVATAVECPCDS 215
           +        A  C    
Sbjct: 199 IDGCEASVEAKFCATQG 215
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 100.0
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 100.0
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 99.97
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.97
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 94.31
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 94.15
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 93.87
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 92.77
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 92.62
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 91.93
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 90.78
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 87.3
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 85.88
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 84.39
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 83.42
d1txka1115 Glucans biosynthesis protein G (MdoG, OpgG), C-ter 81.7
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=1.8e-44  Score=306.15  Aligned_cols=186  Identities=32%  Similarity=0.557  Sum_probs=167.0

Q ss_pred             eeEEeCCCCCcccccCCCeEEEEEcCCCeeeEEEccceEeeEEEEEEEecCCCCceeEEEEeeecCCCCCCCCeeeEEee
Q 028023           17 EIAIDYTPEACTHCADSNSITLTFDHRGGARWRSTTRFLYGTFSSLIQCPKGNTSGLNFNIYLSSLEGDKSQDEIDFEFL   96 (215)
Q Consensus        17 ~~~~df~~~~~~~~~~~~~l~L~~~~~~ga~i~Sk~~~~YG~~Ear~K~p~g~~~G~~pAfwl~~~~~~~~~~EIDiE~~   96 (215)
                      .|.+.|+++|+++..+|..|+|++|+.+|++|+||+.|+|||||||||+|++.++|++++||+.+.  ++..+|||||++
T Consensus         9 ~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~--~~~~dEIDiE~l   86 (267)
T d1umza_           9 NYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQ--NSEHDEIDFEFL   86 (267)
T ss_dssp             HEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECS--SSSCCEEEEEEE
T ss_pred             CceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCC--CCCCCeEEEEEe
Confidence            477889999999998999999999999999999999999999999999999886678888877753  466899999999


Q ss_pred             CCC---CceEEEEEEeCCCCCCceEEeCCcccCCccEEEEEEECCCcEEEEECCeEEEEEecCC--CCCCC-CCccEEEE
Q 028023           97 GKD---KTIVQTNYYTTGTGNREEIHDLGFDCSEGFHEYVIKWGPDLIQWLIDGKVVRRAERNE--GEGFP-NKPMFLYA  170 (215)
Q Consensus        97 g~~---~~~~~~n~~~~~~~~~~~~~~~~~d~~~~fH~Y~idWtp~~I~fyvDG~~v~~~~~~~--~~~~P-~~P~~l~l  170 (215)
                      |++   +..+|+|+|..+.+++++.+.+.++++++||+|+|+|+|++|+|||||++|+++.+.+  +..+| ++||+|++
T Consensus        87 G~~~~~~~~v~tn~~~~g~g~~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p~~~pm~i~~  166 (267)
T d1umza_          87 GNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYS  166 (267)
T ss_dssp             CCSTTSCCEEEEEEEBTTBCCCCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCSCSSCBEEEE
T ss_pred             cccCCcccEEEeeEeCCCCCCcceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCCcceEEEEEE
Confidence            976   4579999999988888888889999999999999999999999999999999998654  45566 89999999


Q ss_pred             EeecCCCCCCCccccCCCCCCCCEEEEEeEEEEe
Q 028023          171 SVWDASHIDKARWCGPYVGCDAPYVCLYKDIHVP  204 (215)
Q Consensus       171 n~W~~g~~~~g~W~G~~~~~~~p~~~~~~~v~v~  204 (215)
                      |+|++++++...+.++.+++.+||+|.|++++|.
T Consensus       167 niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~  200 (267)
T d1umza_         167 SLWNADDWATRGGLEKTDWSKAPFIASYRSFHID  200 (267)
T ss_dssp             EEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEE
T ss_pred             eeeeCCCccccCCeeeecCCCCCEEEEEEEEEEE
Confidence            9999999987777888888999999999999984
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1txka1 b.1.18.2 (A:397-511) Glucans biosynthesis protein G (MdoG, OpgG), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure