Citrus Sinensis ID: 028037

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHEEEcEEEEEEEEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEEccccccccccccccEEEEEEEEEccEEEEEEEEEcccccccccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHHcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccHHcccccccccccccccccccccEEEEEEEEccccccccEEEEEEccccccccEEEEEEEEEEEEEEEcccEEEEEEEEccccccEEEEcHHHHcccEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSigkqpavryqkltrrsssesspapdtmEAGLVELSRtfssgydtdsdLVSLKISllgdcqigkTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSiwdvggdsrsfdhvpiACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Flexible Loop (DISEMBL)
MAKIIHEATENMTQLCRRVVHvnirrslfdrvSIFRRFFRFIWERILVcsigkqpavryqkltrrsssesspapdtMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Low Complexity Region (SEG)
MAKIIHEATENMTQLCRRVVHVNIRRSLfdrvsifrrffrfiweriLVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Disordered region (IsUnstruct)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY****************************F*SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII*
Disordered Region (DISOPRED)
*********ENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERIL****************************************************SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Disordered Region (DISEMBL)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR******************MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Disordered Region (DISPRO)
*AKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLT*******************************DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
P87027	198	Septum-promoting GTP-bind	yes	no	0.511	0.555	0.468	3e-24
P38987	245	Protein TEM1 OS=Saccharom	yes	no	0.479	0.420	0.394	3e-15
Q9VP48	388	Ras-related protein Rab-2	yes	no	0.483	0.268	0.381	3e-13
Q9JKM7	223	Ras-related protein Rab-3	yes	no	0.534	0.515	0.303	1e-10
Q29RR0	256	Ras-related protein Rab-2	yes	no	0.674	0.566	0.266	1e-09
Q96AX2	223	Ras-related protein Rab-3	yes	no	0.567	0.547	0.279	1e-09
P51156	257	Ras-related protein Rab-2	no	no	0.604	0.505	0.278	2e-09
Q9ULW5	256	Ras-related protein Rab-2	no	no	0.6	0.503	0.272	2e-09
Q504M8	260	Ras-related protein Rab-2	no	no	0.604	0.5	0.278	4e-09
P55745	223	Ras-related protein Rab-2	no	no	0.465	0.448	0.297	6e-09

>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
           D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct: 3   DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+
Sbjct: 63  IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNK 113

GTP-binding protein essential for the induction of septum formation at G2 and pre-START stages of mitosis. Acts via the cdc7 protein kinase pathway.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TEM1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct: 19  VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                + +PIA   +  I+F+FDLT   TL+SI  WY +A   N
Sbjct: 79  QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLN 122

GTP-binding protein involved in termination of M phase. May play a role in triggering the degradation of G2 cyclin to inactivate M-phase promoting factor at the termination of mitosis. Acts upstream of CDC15 kinase and may be required to activate the CDC15 protein kinase pathway.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 6/110 (5%)

Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 152
           D V+ K  LLGD  +GKTSF+VKY  N  E  L       G+ L NK ++V G R+   I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244

Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           WD  G  R         +DA A+L ++D+T++ T ++I  W  E R++ Q
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ 294

Participates in exocrine secretion.

Drosophila melanogaster (taxid: 7227)

>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 7/122 (5%)

Query: 83  ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
           E S  FS  YD     ++ K+ LLGD  +GKT F++++          +   G++  NK 
Sbjct: 17  ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71

Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           + V GAR+   IWD  G  R         +DA A+L ++D+T++ + ++I  W +E  ++
Sbjct: 72  VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEY 131

Query: 201 NQ 202
            Q
Sbjct: 132 AQ 133

Mus musculus (taxid: 10090)

>sp|Q29RR0|RAB26_BOVIN Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 55  PAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKT 114
           PA    +  R  ++   P P+    G  +  R+ S G   D   V+ K+ L+GD  +GKT
Sbjct: 21  PAANGPRPVRPGTAR--PGPEAPPNGPPQPGRS-SVGGGGDFYDVAFKVMLVGDSGVGKT 77

Query: 115 SFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172
             +V++          +   G++  NK + V G ++   IWD  G  R         +DA
Sbjct: 78  CLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDA 137

Query: 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
            A+L ++D+T++ + +SI  W +E ++  Q
Sbjct: 138 HALLLLYDVTNKASFDSIQAWLTEIQEHAQ 167

Participates in exocrine secretion: regulates the secretion of acinar granules in the parotid gland.

Bos taurus (taxid: 9913)

>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 76  TMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAG 133
           T +    E S   S  YD     ++ K+ LLGD  +GKT F++++          +   G
Sbjct: 10  TRDGEAPERSPPCSPSYD-----LTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVG 64

Query: 134 LNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
           ++  NK + V G R+   IWD  G  R         +DA A+L ++D+T++ + ++I  W
Sbjct: 65  IDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAW 124

Query: 194 YSEARKWNQ 202
            +E  ++ Q
Sbjct: 125 LTEIHEYAQ 133

Homo sapiens (taxid: 9606)

>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 72  PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
           P P+    G  +  R  S G   D   V+ K+ L+GD  +GKT  +V++          +
Sbjct: 37  PGPEAPPNGPPQSGRP-SLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 95

Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
              G++  NK L V G ++   IWD  G  R         +DA A+L ++D+T++ + ++
Sbjct: 96  STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 155

Query: 190 IVGWYSEARKWNQ 202
           I  W +E +++ Q
Sbjct: 156 IQAWLTEIQEYAQ 168

Participates in exocrine secretion: regulates the secretion of acinar granules in the parotid gland.

Rattus norvegicus (taxid: 10116)

>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 3/132 (2%)

Query: 73  APDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQ 130
            PD    G ++  R  S G   D   V+ K+ L+GD  +GKT  +V++          + 
Sbjct: 37  GPDAPPNGPLQPGRP-SLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS 95

Query: 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI 190
             G++  NK L V G ++   +WD  G  R         +DA A+L ++D+T++ + ++I
Sbjct: 96  TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI 155

Query: 191 VGWYSEARKWNQ 202
             W +E  ++ Q
Sbjct: 156 QAWLTEIHEYAQ 167

Participates in exocrine secretion: regulates the secretion of acinar granules in the parotid gland.

Homo sapiens (taxid: 9606)

>sp|Q504M8|RAB26_MOUSE Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)

Query: 72  PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
           P P+    G  +  R  S G   D   V+ K+ L+GD  +GKT  +V++          +
Sbjct: 40  PGPEAPPNGPPQSIRP-SLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 98

Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
              G++  NK L V G ++   IWD  G  R         +DA A+L ++D+T++ + ++
Sbjct: 99  STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 158

Query: 190 IVGWYSEARKWNQ 202
           I  W +E +++ Q
Sbjct: 159 IQAWLTEIQEYAQ 171

Participates in exocrine secretion: regulates the secretion of acinar granules in the parotid gland.

Mus musculus (taxid: 10090)

>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 17  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            R     PI  +D+   + ++D+T   +   +  W  E RK
Sbjct: 77  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 117

Regulates integrin internalization and recycling, but does not influence the traffic of endosomally translocated receptors in general. As a result, may regulate cell adhesion and migration. During the mitosis of adherent cells, controls the endosomal trafficking of integrins which is required for the successful completion of cytokinesis.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
224117478	278	predicted protein [Populus trichocarpa]	0.902	0.697	0.671	1e-73
255564003	245	sgp1 monomeric G-protein, putative [Rici	0.902	0.791	0.676	4e-73
224126377	279	predicted protein [Populus trichocarpa]	0.897	0.691	0.665	1e-69
356553345	282	PREDICTED: septum-promoting GTP-binding	0.911	0.695	0.636	1e-68
356501505	282	PREDICTED: septum-promoting GTP-binding	0.906	0.691	0.643	2e-68
147838102	277	hypothetical protein VITISV_008356 [Viti	0.893	0.693	0.670	3e-68
225461736	282	PREDICTED: septum-promoting GTP-binding	0.893	0.680	0.670	3e-68
357494385	289	Ras-related protein Rab-37 [Medicago tru	0.934	0.695	0.591	9e-66
297796357	288	GTP-binding family protein [Arabidopsis	0.930	0.694	0.567	1e-59
356567378	284	PREDICTED: septum-promoting GTP-binding	0.916	0.693	0.578	2e-57

>gi|224117478|ref|XP_002317584.1| predicted protein [Populus trichocarpa] gi|222860649|gb|EEE98196.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/204 (67%), Positives = 166/204 (81%), Gaps = 10/204 (4%)

Query: 1   MAKIIHEATENMTQLCRRVVHV-NIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           MA+++HE    MTQLCR VVHV NI+ ++ +RV++F++FF+FIW+RIL CSIGK   VRY
Sbjct: 1   MAEVVHE---KMTQLCREVVHVKNIKWNILERVTVFKQFFQFIWDRILACSIGK--PVRY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVK 119
           ++L  R  S   P P+ MEAG+  L     SG++ DSDLV LKISLLGDCQIGKTSF++K
Sbjct: 56  RRLASRPYS---PPPEAMEAGVESLEAASCSGFNPDSDLVRLKISLLGDCQIGKTSFMIK 112

Query: 120 YVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178
           YVG+EQE+  L M GLNL++KTL VQGARI+FSIWDV GDSRS DHVPIACKDAVAILFM
Sbjct: 113 YVGDEQEKKCLGMTGLNLMDKTLFVQGARISFSIWDVAGDSRSIDHVPIACKDAVAILFM 172

Query: 179 FDLTSRCTLNSIVGWYSEARKWNQ 202
           FDLTSRCTLNS++ WYS+ARKWNQ
Sbjct: 173 FDLTSRCTLNSVLEWYSQARKWNQ 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564003|ref|XP_002523001.1| sgp1 monomeric G-protein, putative [Ricinus communis] gi|223537813|gb|EEF39431.1| sgp1 monomeric G-protein, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 142/210 (67%), Positives = 168/210 (80%), Gaps = 16/210 (7%)

Query: 12  MTQLCRRV-VHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSES 70
           MTQ+CR++ +HV I+ S+ +RVS+FR+FF+FIW+RIL CSIGK   VRY++LTR+ SS  
Sbjct: 1   MTQICRKINLHVTIKWSILERVSVFRQFFQFIWDRILACSIGK--PVRYRRLTRQPSS-- 56

Query: 71  SPAPDTMEAGLVELSRTFSS---GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQER 127
            P P+ +EAG    S   SS   GY+ DSDLV LKISLLGDC+IGKTSFVVKYVG+EQE+
Sbjct: 57  -PPPEAIEAGGFAPSEELSSRFSGYNADSDLVPLKISLLGDCRIGKTSFVVKYVGDEQEK 115

Query: 128 S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT 186
             L+M GLNL++KTL VQGARI FSIWDVGGDSRS DHVPIACKDAVAILFMFDLTSRCT
Sbjct: 116 KCLEMTGLNLMDKTLFVQGARITFSIWDVGGDSRSLDHVPIACKDAVAILFMFDLTSRCT 175

Query: 187 LNSIVGWYSEARKWNQ------VTKQSLFF 210
           LNS+V WYS+ARKWNQ        K +LFF
Sbjct: 176 LNSVVEWYSQARKWNQARAYAKAMKATLFF 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126377|ref|XP_002319823.1| predicted protein [Populus trichocarpa] gi|222858199|gb|EEE95746.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 137/206 (66%), Positives = 168/206 (81%), Gaps = 13/206 (6%)

Query: 1   MAKIIHEATENMTQLCRRVVHVN-IRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRY 59
           M+KI+HE    MTQLC ++ H N I+ S+ +RV++F++FF FIW++IL CSIGK PA RY
Sbjct: 1   MSKIVHE---KMTQLCVKIAHGNSIKWSILERVTVFKQFFHFIWDKILACSIGK-PA-RY 55

Query: 60  QKLTRRSSSESSPAPDTMEAGLVELSRTFSS--GYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++LT RS S   P P+ +EAG VE S   +S  G+  DSDLVSLKISLLGDCQIGKTSFV
Sbjct: 56  RRLTYRSCS---PPPEAIEAG-VETSLEAASCRGFSKDSDLVSLKISLLGDCQIGKTSFV 111

Query: 118 VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176
           +KYVG+EQE+  L+M GL+L++KTL VQGARI+FSIWDV GDS S DHVPIACKDAVAIL
Sbjct: 112 IKYVGDEQEKKCLEMTGLSLMDKTLFVQGARISFSIWDVAGDSSSLDHVPIACKDAVAIL 171

Query: 177 FMFDLTSRCTLNSIVGWYSEARKWNQ 202
           FMFDLTSRCTLN++V WY++ARKWNQ
Sbjct: 172 FMFDLTSRCTLNNVVEWYNQARKWNQ 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553345|ref|XP_003545017.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 156/201 (77%), Gaps = 5/201 (2%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R     RVS    FFRFIW R++VCS+   P+  Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVQVDVRWGFLKRVSFVGHFFRFIWNRLVVCSVAGSPS-HYRKL 62

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122
             R  S S PA  T++  +   + T + GYD+DSDLV+LKISLLGDC IGKT+FV+KYVG
Sbjct: 63  PLRDPSSSPPA--TVD-DVFSSAATTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKYVG 119

Query: 123 NEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181
           NEQE+ SLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKDAVAIL MFDL
Sbjct: 120 NEQEKGSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDAVAILIMFDL 179

Query: 182 TSRCTLNSIVGWYSEARKWNQ 202
           TSRCTLNS+VGWYSEARKWNQ
Sbjct: 180 TSRCTLNSVVGWYSEARKWNQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501505|ref|XP_003519565.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 158/202 (78%), Gaps = 7/202 (3%)

Query: 3   KIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKL 62
           KIIH+ T  M+QLC+++V V++R  +  RVS    FFRFIW R+LVCS+  +P+ +Y+KL
Sbjct: 4   KIIHDTTRKMSQLCQKIVKVDVRWGVLKRVSFVGHFFRFIWNRLLVCSVAGRPS-QYRKL 62

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSG-YDTDSDLVSLKISLLGDCQIGKTSFVVKYV 121
             R  S S P+     A  V  S T ++G YD+DSDLV+LKISLLGDC IGKT+FV+KYV
Sbjct: 63  PVRDPSSSPPS----YADDVFFSATTTTGGYDSDSDLVNLKISLLGDCHIGKTTFVIKYV 118

Query: 122 GNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180
           GNEQE RSLQM GLNL++KTL VQGARI+F IWDV GD RS D +P+ACKD+VAIL MFD
Sbjct: 119 GNEQEKRSLQMEGLNLMDKTLSVQGARISFRIWDVAGDKRSLDQIPMACKDSVAILIMFD 178

Query: 181 LTSRCTLNSIVGWYSEARKWNQ 202
           LTSRCTLNS+VGWYSEARKWNQ
Sbjct: 179 LTSRCTLNSVVGWYSEARKWNQ 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838102|emb|CAN60928.1| hypothetical protein VITISV_008356 [Vitis vinifera] gi|302142871|emb|CBI20166.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 164/197 (83%), Gaps = 5/197 (2%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 3   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 60

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF++KYVG+EQE
Sbjct: 61  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 118

Query: 127 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 119 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 178

Query: 186 TLNSIVGWYSEARKWNQ 202
           TLNS++GWYS+AR+WNQ
Sbjct: 179 TLNSVIGWYSQARRWNQ 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461736|ref|XP_002285529.1| PREDICTED: septum-promoting GTP-binding protein 1 [Vitis vinifera]

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/197 (67%), Positives = 164/197 (83%), Gaps = 5/197 (2%)

Query: 7   EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRS 66
           EAT  MTQLCR++V VNIR  + DRV+IF++FFRFIW+RI+VCSIGK   +RY +L+RRS
Sbjct: 8   EATGKMTQLCRKIVRVNIRVRILDRVTIFQKFFRFIWDRIIVCSIGK--PIRYHRLSRRS 65

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
              S    +T+E+GL     + ++G D+DSDLVSLKI ++GDCQIGKTSF++KYVG+EQE
Sbjct: 66  PPPSPSP-ETIESGLQSDDPSTAAG-DSDSDLVSLKICVMGDCQIGKTSFLIKYVGDEQE 123

Query: 127 RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
           +  L+M GLNL++KTL+VQ ARIAFSIWDVGGD  S  HVPIACKDAVAILFMFDLTSRC
Sbjct: 124 KKCLEMTGLNLMDKTLIVQDARIAFSIWDVGGDHTSLTHVPIACKDAVAILFMFDLTSRC 183

Query: 186 TLNSIVGWYSEARKWNQ 202
           TLNS++GWYS+AR+WNQ
Sbjct: 184 TLNSVIGWYSQARRWNQ 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494385|ref|XP_003617481.1| Ras-related protein Rab-37 [Medicago truncatula] gi|355518816|gb|AET00440.1| Ras-related protein Rab-37 [Medicago truncatula]

 Score =  255 bits (651), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/208 (59%), Positives = 164/208 (78%), Gaps = 7/208 (3%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MAK+I E T+ MTQLCR++V V+++  +  RVS   +FFRFIW +++VCS+G+ PA +Y+
Sbjct: 1   MAKVIQETTKKMTQLCRKIVQVDVKYGMLQRVSFVGQFFRFIWNKLMVCSVGRSPA-QYR 59

Query: 61  KLTRRSSSESSPA-----PDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
           +L+   SS SS +     P T++ G     +  ++GY++DSDLV+LKISLLGDC IGKT+
Sbjct: 60  RLSLNHSSASSSSSLSPSPATVDDGFTREQQHTNNGYESDSDLVNLKISLLGDCHIGKTT 119

Query: 116 FVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174
           F++KYVGNE ++RSLQM GLNL++KTL VQGARI+F IWDV GD +S D +P+ACKDAVA
Sbjct: 120 FLIKYVGNEVEKRSLQMEGLNLMDKTLYVQGARISFCIWDVAGDKKSLDQIPMACKDAVA 179

Query: 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           +L MFDLTSR TLN++VGWYSEARKWNQ
Sbjct: 180 LLIMFDLTSRSTLNNVVGWYSEARKWNQ 207

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796357|ref|XP_002866063.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297311898|gb|EFH42322.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/206 (56%), Positives = 149/206 (72%), Gaps = 6/206 (2%)

Query: 1   MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQ 60
           MA+ +HE    +T  CR++VHVNI+  + +RVSIF  FFRF+W +I+ CS   +  + Y+
Sbjct: 1   MAEKVHEIAGKLTPFCRKIVHVNIKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query: 61  KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
           ++  R SS +    D  +    E +   R F SG  +DSDLVSLKISLLGDCQ GKT+FV
Sbjct: 61  QIVHRISSTAGDIFDGDDDTATEHTVSTRRFGSG--SDSDLVSLKISLLGDCQTGKTTFV 118

Query: 118 VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 176
           +KYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct: 119 IKYVGDENQGFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query: 177 FMFDLTSRCTLNSIVGWYSEARKWNQ 202
           FMFDLTSR TLN + GWYS+ARKWN+
Sbjct: 179 FMFDLTSRSTLNRVFGWYSQARKWNK 204

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567378|ref|XP_003551897.1| PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 121/209 (57%), Positives = 148/209 (70%), Gaps = 12/209 (5%)

Query: 1   MAKIIHEATENMT----QLCRRVVH-VNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQP 55
           MAKII ++    T    QLC R+VH VN+  +LF RVS   RF   IW+R+L+CS+G+  
Sbjct: 1   MAKIIGKSRRRRTTTTQQLCHRMVHHVNVHCNLFHRVSFLGRF---IWDRMLLCSLGRP- 56

Query: 56  AVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTS 115
              Y +L  R     +             + T  S  D+DSDLV+LKISLLGDC IGKTS
Sbjct: 57  --SYLRLPLRDPPPQATVHGGASMHGYPFTTTTPSPCDSDSDLVNLKISLLGDCHIGKTS 114

Query: 116 FVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174
           FV+KYVG+EQE RSLQM GLNL++KTL VQGARI+FSIWDV GD+ S   +P+ACKD+VA
Sbjct: 115 FVIKYVGDEQEKRSLQMKGLNLMDKTLFVQGARISFSIWDVAGDTGSLYQIPMACKDSVA 174

Query: 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQV 203
           IL MFDLTSRCTLNS+VGWYS+ARKWNQ+
Sbjct: 175 ILIMFDLTSRCTLNSVVGWYSKARKWNQI 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2160125	288	SGP1 [Arabidopsis thaliana (ta	0.930	0.694	0.509	1.6e-47
TAIR|locus:2093019	292	SGP2 [Arabidopsis thaliana (ta	0.502	0.369	0.651	9.3e-38
ASPGD|ASPL0000066888	314	spgA [Emericella nidulans (tax	0.632	0.433	0.430	8.4e-26
DICTYBASE|DDB_G0291269	203	spg1 "small GTPase" [Dictyoste	0.534	0.566	0.474	1.1e-25
POMBASE|SPAC1565.06c	198	spg1 "GTPase Spg1" [Schizosacc	0.511	0.555	0.468	6.8e-24
SGD|S000004529	245	TEM1 "GTP-binding protein of t	0.460	0.404	0.4	9.8e-16
FB|FBgn0086913	388	Rab26 "Rab26" [Drosophila mela	0.488	0.270	0.403	9.7e-14
MGI|MGI:2443284	260	Rab26 "RAB26, member RAS oncog	0.6	0.496	0.298	4.9e-13
UNIPROTKB|D4A0G7	223	LOC100364984 "RCG35079, isofor	0.530	0.511	0.325	3.1e-12
UNIPROTKB|E1C0Q9	253	RAB26 "Uncharacterized protein	0.693	0.588	0.285	5e-12

TAIR|locus:2160125 SGP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 105/206 (50%), Positives = 134/206 (65%)

Query:     1 MAKIIHEATENMTQLCRRVVHVNIRRSLXXXXXXXXXXXXXXXXXXLVCSIGKQPAVRYQ 60
             MA+ +HE    +T  CR++VHVN +  +                  + CS   +  + Y+
Sbjct:     1 MAEKVHEIAGKITPFCRKIVHVNRKWRIIERVSIFGDFFRFLWRKIVSCSSIIEKPILYR 60

Query:    61 KLTRRSSSESSPAPDTMEAGLVELS---RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV 117
             ++  + SS +    D  +    E +   R F S   +DSDLVSLKISLLGDCQ GKT+FV
Sbjct:    61 RIVHKISSTAGDIFDGDDDTTTEPTVSGRRFGSS--SDSDLVSLKISLLGDCQTGKTTFV 118

Query:   118 VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDHVPIACKDAVAIL 176
             VKYVG+E +  L+M GLNL++KT  VQG  I+FSIWDVGGD  RS DH+PIACKDAVAIL
Sbjct:   119 VKYVGDENQSFLEMTGLNLMDKTFYVQGVTISFSIWDVGGDEKRSKDHIPIACKDAVAIL 178

Query:   177 FMFDLTSRCTLNSIVGWYSEARKWNQ 202
             FMFDLTSR TLNS+ GWYS+ARKWN+
Sbjct:   179 FMFDLTSRSTLNSVFGWYSQARKWNK 204

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2093019 SGP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
 Identities = 73/112 (65%), Positives = 91/112 (81%)

Query:    94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAF 150
             +DSDLVSLKISLLGD +IGKTSF+ KYVG E+E   R L+  G+N  +KTL + GARI++
Sbjct:   100 SDSDLVSLKISLLGDPEIGKTSFLAKYVGEEKEVEMRELEK-GINCTDKTLYMGGARISY 158

Query:   151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
             SIW++ G  RS D +P+ACKD+VAILFMFDLTSRCTLNS++ WY +ARK NQ
Sbjct:   159 SIWELEGAERSRDQIPVACKDSVAILFMFDLTSRCTLNSVISWYQQARKSNQ 210

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0090404 "pollen tube tip" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ASPGD|ASPL0000066888 spgA [Emericella nidulans (taxid:162425)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 59/137 (43%), Positives = 82/137 (59%)

Query:    67 SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQ 125
             + +  P P T       LS T      T  + V +K+ ++GD QIGKTS +VKYV G+  
Sbjct:    93 TQDPQPQPPTSSRPSSGLSGTQKQPAQTTKNSVVIKVGMVGDAQIGKTSLMVKYVEGSWD 152

Query:   126 ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 185
             E  +Q  G+N + KT+ ++   I FSIWD+GG     + +P+ C DAVAILFMFDLT + 
Sbjct:   153 EDYIQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLTRKS 212

Query:   186 TLNSIVGWYSEARKWNQ 202
             TLNSI  WY + R +N+
Sbjct:   213 TLNSIKEWYRQGRGFNK 229

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031028 "septation initiation signaling cascade" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

DICTYBASE|DDB_G0291269 spg1 "small GTPase" [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 55/116 (47%), Positives = 78/116 (67%)

Query:    88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGA 146
             F+   DT  + V +K+ ++GD QIGKTS +VKYV G   E  +Q  G+N + KT+ ++G 
Sbjct:     6 FTGSSDTKKNNVVVKVGMVGDSQIGKTSLMVKYVEGTFDEDYIQTLGVNFMEKTISIRGT 65

Query:   147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              I FSIWD+GG     + +P+ C DAVAILFMFDL+ + TLNS+  WY +AR +N+
Sbjct:    66 EITFSIWDLGGQREFVNMLPLVCNDAVAILFMFDLSRKSTLNSVKEWYRQARGFNK 121

GO:0005813 "centrosome" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007096 "regulation of exit from mitosis" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC1565.06c spg1 "GTPase Spg1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 52/111 (46%), Positives = 74/111 (66%)

Query:    93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
             D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FS
Sbjct:     3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62

Query:   152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
             IWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+
Sbjct:    63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNK 113

GO:0003924 "GTPase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IC

GO:0005816 "spindle pole body" evidence=IDA

GO:0031028 "septation initiation signaling cascade" evidence=IGI

GO:0033205 "cell cycle cytokinesis" evidence=IMP

GO:0034613 "cellular protein localization" evidence=IMP

GO:0044732 "mitotic spindle pole body" evidence=IDA

SGD|S000004529 TEM1 "GTP-binding protein of the Ras family involved in M-phase termination" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 40/100 (40%), Positives = 62/100 (62%)

Query:    99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
             V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG
Sbjct:    19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78

Query:   158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197
                  + +PIA   +  I+F+FDLT   TL+SI  WY +A
Sbjct:    79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQA 118

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005816 "spindle pole body" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007096 "regulation of exit from mitosis" evidence=TAS

GO:0051301 "cell division" evidence=IEA

FB|FBgn0086913 Rab26 "Rab26" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 9.7e-14, P = 9.7e-14
 Identities = 44/109 (40%), Positives = 63/109 (57%)

Query:    97 DLVSLKISLLGDCQIGKTSFVVKY-VGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
             D V+ K  LLGD  +GKTSF+VKY  G  +  S     G+ L NK ++V G R+   IWD
Sbjct:   187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWD 246

Query:   155 VGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
               G  R F  V  A  +DA A+L ++D+T++ T ++I  W  E R++ Q
Sbjct:   247 TAGQER-FRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ 294

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=ISS

GO:0031226 "intrinsic to plasma membrane" evidence=ISS

GO:0017157 "regulation of exocytosis" evidence=ISS

GO:0031982 "vesicle" evidence=ISS

MGI|MGI:2443284 Rab26 "RAB26, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
 Identities = 40/134 (29%), Positives = 68/134 (50%)

Query:    72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
             P P+    G  +  R  S G   D   V+ K+ L+GD  +GKT  +V++          +
Sbjct:    40 PGPEAPPNGPPQSIRP-SLGSTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 98

Query:   130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLN 188
                G++  NK L V G ++   IWD  G  R F  V  A  +DA A+L ++D+T++ + +
Sbjct:    99 STVGIDFRNKVLDVDGMKVKLQIWDTAGQER-FRSVTHAYYRDAHALLLLYDITNKDSFD 157

Query:   189 SIVGWYSEARKWNQ 202
             +I  W +E +++ Q
Sbjct:   158 NIQAWLTEIQEYAQ 171

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=ISO

GO:0019002 "GMP binding" evidence=ISO

GO:0031226 "intrinsic to plasma membrane" evidence=ISO

GO:0035272 "exocrine system development" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

GO:0045055 "regulated secretory pathway" evidence=ISO

UNIPROTKB|D4A0G7 LOC100364984 "RCG35079, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 40/123 (32%), Positives = 64/123 (52%)

Query:    83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
             E S  FS  YD        K+ LLGD  +GKT F++++          +   G++  NK 
Sbjct:    17 ERSPPFSPNYDLTG-----KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKV 71

Query:   141 LMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             + V GAR+   IWD  G  R F  V  A  +DA A+L ++D+T++ + ++I  W +E  +
Sbjct:    72 VTVDGARVKLQIWDTAGQER-FRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHE 130

Query:   200 WNQ 202
             + Q
Sbjct:   131 YAQ 133

GO:0005525 "GTP binding" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

UNIPROTKB|E1C0Q9 RAB26 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 44/154 (28%), Positives = 73/154 (47%)

Query:    52 GKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQI 111
             G  P+         +    +PAP+    G     R   S      DL + K+ L+GD  +
Sbjct:    13 GSAPSAALPPPAAAAPRSPAPAPELPRNGGATSGRPSLSSSGEFYDL-AFKVMLVGDSGV 71

Query:   112 GKTSFVVKYV-GNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 169
             GKT  +V++  G     S +   G++  NK L V G ++   IWD  G  R F  V  A 
Sbjct:    72 GKTCLLVRFKDGAFLAGSFISTVGIDFRNKVLTVDGVKVKLQIWDTAGQER-FRSVTHAY 130

Query:   170 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              +DA A+L ++D+T++ + ++I  W +E  ++ Q
Sbjct:   131 YRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-54
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-22
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	7e-16
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-12
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-11
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-10
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-10
pfam00071	162	pfam00071, Ras, Ras family	4e-09
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-09
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	5e-09
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-08
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-08
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	6e-08
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	8e-08
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-07
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-07
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-07
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	5e-07
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-07
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-07
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	9e-07
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-07
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-06
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-06
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-06
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-05
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-05
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	5e-05
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	8e-05
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-04
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-04
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-04
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-04
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-04
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	4e-04
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-04
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	8e-04
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	8e-04
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	0.001
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	0.001
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	0.001
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.002
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	0.002
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	0.003
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	0.003

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score =  171 bits (435), Expect = 3e-54
 Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LKI LLGD QIGKTS +VKYV  E  E  +Q  G+N + KT+ ++G  I FSIWD+GG  
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              + +P+ CKDAVAILFMFDLT + TLNSI  WY +AR +N+
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNK 103

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 86.3 bits (214), Expect = 6e-22
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG-DS 159
           K+ ++GD   GK+S + + VG E     L++ G  L   TL V G     +IWD GG + 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLN---SIVGWYSEARKWN 201
             F+H  I  K A AIL ++DLT R +LN    ++ W    RK  
Sbjct: 61  LKFEH-IIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLG 104

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 71.7 bits (177), Expect = 7e-16
 Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GKTS ++++V N+   + +   G++  +KT+ V G ++   IWD  G  
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  +     + A   + ++D+T+R +  ++  W +E ++
Sbjct: 61  R-FRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKE 100

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           K+ L+GD  +GKT  +V++          +   G+   NK + V G ++   IWD  G  
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  ++ Q
Sbjct: 62  R-FRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQ 104

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 59.5 bits (145), Expect = 2e-11
 Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 102 KISLLGDCQIGKTSFVVKYVGN----EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           K+ LLG+ ++GKTS V++YV N    + E + Q +      KT+ + G RI  +IWD  G
Sbjct: 2   KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS---FFQKTVNIGGKRIDLAIWDTAG 58

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL 208
             R     PI  +DA   + ++D+T   +         + +KW +  KQ  
Sbjct: 59  QERYHALGPIYYRDADGAILVYDITDADSF-------QKVKKWIKELKQMR 102

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 102 KISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GKT  V ++  G   ER     G++   KTL +QG R+   IWD  G  R
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
                    + A   +  +D+T R +  S+  W  E  K+
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY 104

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 56.2 bits (135), Expect = 7e-10
 Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI 148
           SSG  +  DL S KI L+GD  +GK+S +V ++ +  E      G++   K L V G R+
Sbjct: 4   SSGQSSGYDL-SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRL 62

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSE 196
             +IWD  G  R         ++A  I+ ++D+T R T  ++   W  E
Sbjct: 63  KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKE 111

Length = 211

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 53.3 bits (129), Expect = 4e-09
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+S ++++  N+  E  +   G++   KT+ V G  +   IWD  G  R
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            F  +     + A   L ++D+TSR +  ++  W  E  +
Sbjct: 61  -FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILR 99

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LGD  +GKTS + +++ +  +   Q   G++ ++KT+ V    +   +WD  G  R
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
               +P   +D+   + ++D+T+R + ++   W  + R
Sbjct: 62  FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVR 99

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 13/105 (12%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GK+S + ++   +  E+     G++   KT+ V G R+   IWD  G  
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 160 R------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R      S+       + AV  L ++D+T+R +  ++  W  E R
Sbjct: 61  RFRSITSSY------YRGAVGALLVYDITNRESFENLENWLKELR 99

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+GD  +GK++ + ++  NE    S    G+    +TL V+G  +   IWD  G  
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+T R T +++  W  E R
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELR 111

Length = 216

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
             K+ LLGD  +GK+S V+++V NE  E      G   + +T+ +    + F IWD  G 
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            R     P+  + A A + ++D+TS  +      W  E ++
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQE 101

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 160 R 160
           R
Sbjct: 66  R 66

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
           LKI L+GD  +GK+S ++++  +  +  L    G++   KT+ V G ++  +IWD  G  
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197
           R         + A  ++ ++D+T R T +++  W +E 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNEL 98

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI LLGD  +GK+  V +++ +  + + L    L L       +G  I    WD  G  
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R           A A + +FD+T + T  ++  WY E R++
Sbjct: 61  RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY 101

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLI-NKTLMVQGARIAFSIWDVGG 157
              KI +LGD  +GKT+ + + VG+E          NL   KT+      I   +WD  G
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEAR 198
                   P   + A  IL ++D T R  +      W  E R
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELR 105

Length = 219

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++G+  +GKTSF+ +Y  +    + +   G++   KT+     RI   IWD  G  
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF 209
           R         + A+  + M+D+T+  + N++  W ++ + ++    Q + 
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVIL 111

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD   GKT+FV +++  E E+  +   G+ +          +I F++WD  G  +
Sbjct: 2   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61

Query: 161 SFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEA 197
                    +D   I     + MFD+TSR T  ++  W+ + 
Sbjct: 62  -----FGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL 98

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI ++GD  +GKT    ++      ER+    G++   +T+ + G RI   +WD  G  R
Sbjct: 4   KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQER 63

Query: 161 SFDH--VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            F    V    ++  A++F++D+T+  + +S+  W  E  +
Sbjct: 64  -FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQ 103

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              R+ 
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
             +WD  G  R         +DA+  L MFDLTS  +  ++  W S+ +
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQ 113

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           KI L+GD Q GKT+ +  +  +    +           +  V   RI  S+WD  G S  
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSG-SPY 61

Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEAR 198
           +D+V P++  D+ A+L  FD++   TL+S++  W  E R
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR 100

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            ++ L+GD  +GKT  + ++  NE   S +   G++   KT+ V G ++   IWD  G  
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R         + A  I  ++D++S  +   I+ W S+
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSD 97

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 11/107 (10%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWD 154
            ++   K+ L+GD  +GKT+FV +++  E E + +   G+ +           I F++WD
Sbjct: 5   DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWD 64

Query: 155 VGGDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             G       R   ++   C    AI+ MFD+TSR T  ++  W+ +
Sbjct: 65  TAGQEKFGGLRDGYYIKGQC----AII-MFDVTSRITYKNVPNWHRD 106

Length = 215

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R F  V  +  + A   L ++D+TSR + N++  W ++AR
Sbjct: 61  R-FRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDAR 99

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK+ LLGD  +GKTS + +Y+    + ++   G     K    Q      SIWD  G  +
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLK----QWGPYNISIWDTAGREQ 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSI 190
                 + C+ A A++  +D+++  +L  +
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL 86

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +    S +   G++   +T+ + G +I   IWD  G  R
Sbjct: 5   KLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 64

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
            F  +  +  + A+ I+ ++D+T   +  +I  W   
Sbjct: 65  -FRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRN 100

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 4/100 (4%)

Query: 102 KISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS 159
           ++ ++GD  +GK+S + ++  G   E S    G++  ++ + ++ G RI   +WD  G  
Sbjct: 4   RLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R F  +  +  +++V +L +FD+T+R +   +  W  EAR
Sbjct: 64  R-FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR 102

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 4   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 62

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSL 208
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++   TK  L
Sbjct: 63  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 114

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWD 154
            D  S K+ ++GD   GKT+FV +++  E E +     G+ +          +I F  WD
Sbjct: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68

Query: 155 VGGDSRSFDHVPIACKDAVAI-----LFMFDLTSRCTLNSIVGWYSEARK 199
             G  + F       +D   I     + MFD+T+R T  ++  W+ +  +
Sbjct: 69  TAGQEK-FG----GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113

Length = 219

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           KI ++GD Q GKT+ +  +  +    S           +  +   RI  ++WD  G S  
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSG-SSY 61

Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKW 200
           +D+V P+A  D+ A+L  FD++   TL+S++  W  E +++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEF 102

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+G+  +GKT  V ++  G          G++ + KT+ ++G +I   IWD  G  
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQVTK 205
           R         + A A++  +D+T   +   +  W  E  ++  N+V  
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVIT 115

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 8/103 (7%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLIN-----KTLMVQGARIAFSIWDV 155
           +K+ +LG   +GKTS V +YV     R L     N I      K ++V    +   IWD 
Sbjct: 1   VKVVMLGKESVGKTSLVERYV---HHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDT 57

Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
            G  R      I  + A A +  +DLT   +      W  E +
Sbjct: 58  AGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQ 100

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 15/64 (23%), Positives = 33/64 (51%)

Query: 133 GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG 192
           G++ ++KTL +    +   +WD  G  R    +P   +D+ A + ++D+T+R +  +   
Sbjct: 14  GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK 73

Query: 193 WYSE 196
           W  +
Sbjct: 74  WIQD 77

Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK  L+GD  +GKTS +V Y  N           +  +  ++V G  +   + D  G   
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD- 59

Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWN 201
            FD + P+   D    L  F + +  +  +I   W  E RK N
Sbjct: 60  EFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN 102

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV N++  +   A  G + + K + V    +   IWD  G 
Sbjct: 1   LKVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQ 59

Query: 159 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSE 196
            R F  + +A  + A   + ++D+T+  +  S+  W  E
Sbjct: 60  ER-FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDE 97

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK  L+GD  +GK   +        E       G++    T+++ G R+   +WD  G  
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R         + A  I+ ++D+T+R + + I  W  E
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKE 103

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +I   IWD  G  
Sbjct: 1   LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 60

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGW 193
           R F+ +  A  + A  I+ ++D+T + T + +  W
Sbjct: 61  R-FNSITSAYYRSAKGIILVYDITKKETFDDLPKW 94

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  R
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
            F  V  +  + A   L ++D+T R T N +  W ++AR
Sbjct: 64  -FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 101

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK++ + ++  NE    S    G+    +T+ + G  I   IWD  G  R
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
            +  +  A  + AV  L ++D+T + T  ++  W  E R
Sbjct: 65  -YRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELR 102

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 22/108 (20%), Positives = 46/108 (42%), Gaps = 17/108 (15%)

Query: 101 LKISLLGDCQIGKT---------SFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFS 151
           +K+  +G+  +GK+          FV KY        L   G++   K + V+   +  +
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKY--------LPTIGIDYGVKKVSVRNKEVRVN 52

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            +D+ G     +      KD   +L ++D+T R +  ++  W  E ++
Sbjct: 53  FFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQ 100

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 106 LGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS----- 159
           +GD   GKT+FV +++  E E+      G+ +           I F++WD  G       
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R   ++   C    AI+ MFD+T+R T  ++  W+ +
Sbjct: 61  RDGYYIQGQC----AII-MFDVTARVTYKNVPNWHRD 92

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ ++GD  +GKT  + ++  +  +++ +   G++   +   V G   +  +WD  G  R
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210
                    + A AI+ +FDLT   +L     W  +A K N  +   LF 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFL 111

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 2/103 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGA-RIAFSIWDVGGD 158
           +KI +LGD   GKTS + ++      +S  Q  GL+  ++ + + G+  +   +WD+GG 
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                 +      A A+  ++D+T+  +  ++  W S  +K N
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVN 103

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE---QERSLQMAGLNLINKTLMV--QGARIAFSIWDV 155
            + +++GD  +GK++ V  +  +    Q+      G +L+ KT+ V      +   I+D 
Sbjct: 1   AQCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDS 60

Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
            G     D V    +    +  ++D+T+  + N+   W +  R
Sbjct: 61  AGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVR 103

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     Q       G+    + + +    I   IWD  G  
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAG-Q 65

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            SF  +  +  + A   L ++D+T R T N +  W  +AR+
Sbjct: 66  ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQ 106

Length = 210

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +KI ++GD  +GKT  ++ Y  N+          +  +  + V G ++   +WD  G   
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQE- 59

Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQVTK 205
            +D + P++       L  F + S  +  ++   WY E + +     
Sbjct: 60  EYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVP 106

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.96
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.96
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
KOG0394	210	consensus Ras-related GTPase [General function pre	99.95
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.95
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.94
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.93
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.93
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.93
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.92
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.92
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.92
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.92
PTZ00369	189	Ras-like protein; Provisional	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.92
PLN03110	216	Rab GTPase; Provisional	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.91
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.91
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.91
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.91
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.91
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.91
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.91
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.91
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.91
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.91
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.9
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.9
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.9
KOG1673	205	consensus Ras GTPases [General function prediction	99.9
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.9
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
PLN03108	210	Rab family protein; Provisional	99.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.9
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.89
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.89
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.89
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.89
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.89
PLN03118	211	Rab family protein; Provisional	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.88
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.88
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.88
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.88
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.88
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.88
KOG0395	196	consensus Ras-related GTPase [General function pre	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.88
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.87
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.87
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.87
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.87
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.87
PLN00223	181	ADP-ribosylation factor; Provisional	99.86
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.86
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.86
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.86
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.85
PTZ00133	182	ADP-ribosylation factor; Provisional	99.85
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.85
COG1100	219	GTPase SAR1 and related small G proteins [General	99.85
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.84
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.84
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.83
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.83
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.82
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.82
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.82
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.81
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.8
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.8
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.78
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.78
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.77
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.77
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.77
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.75
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.74
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.74
PTZ00099	176	rab6; Provisional	99.72
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.71
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.7
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.69
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.69
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.65
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.64
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.64
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.64
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.64
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.61
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.61
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.61
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.6
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.59
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.59
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.57
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.57
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.55
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.52
PRK04213	201	GTP-binding protein; Provisional	99.51
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.51
PRK03003	472	GTP-binding protein Der; Reviewed	99.5
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.49
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.47
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.47
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.46
PRK11058	426	GTPase HflX; Provisional	99.46
PRK03003	472	GTP-binding protein Der; Reviewed	99.46
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.45
PRK15494	339	era GTPase Era; Provisional	99.45
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.42
PRK00093	435	GTP-binding protein Der; Reviewed	99.42
PRK12299	335	obgE GTPase CgtA; Reviewed	99.42
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.41
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.4
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.4
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.37
cd00881	189	GTP_translation_factor GTP translation factor fami	99.37
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.36
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.36
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.36
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.34
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.33
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.33
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.32
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.32
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.31
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.31
PRK12297	424	obgE GTPase CgtA; Reviewed	99.29
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.29
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.28
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.27
PRK05306	787	infB translation initiation factor IF-2; Validated	99.27
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.26
CHL00189	742	infB translation initiation factor 2; Provisional	99.26
PRK10218	607	GTP-binding protein; Provisional	99.26
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.26
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.25
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.23
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.23
COG2229	187	Predicted GTPase [General function prediction only	99.23
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.23
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.22
PRK05433	600	GTP-binding protein LepA; Provisional	99.22
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.21
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.21
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.19
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.18
PRK04004	586	translation initiation factor IF-2; Validated	99.17
PRK00089	292	era GTPase Era; Reviewed	99.16
PRK12296	500	obgE GTPase CgtA; Reviewed	99.15
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.15
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.13
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.13
PRK12317	425	elongation factor 1-alpha; Reviewed	99.12
PRK00093	435	GTP-binding protein Der; Reviewed	99.12
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.11
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.1
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.07
PRK12298	390	obgE GTPase CgtA; Reviewed	99.07
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.06
PRK13351	687	elongation factor G; Reviewed	99.06
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.03
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.02
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.02
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.0
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.0
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.98
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.96
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.95
PRK09602	396	translation-associated GTPase; Reviewed	98.9
COG0486	454	ThdF Predicted GTPase [General function prediction	98.89
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.87
COG1160	444	Predicted GTPases [General function prediction onl	98.84
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.83
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	98.83
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.82
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.8
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.8
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.79
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.77
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.76
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.75
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.74
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.73
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.73
PRK12735	396	elongation factor Tu; Reviewed	98.73
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.7
PLN03126	478	Elongation factor Tu; Provisional	98.69
PRK12736	394	elongation factor Tu; Reviewed	98.67
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.66
PLN00043	447	elongation factor 1-alpha; Provisional	98.65
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.64
COG3596	296	Predicted GTPase [General function prediction only	98.62
COG1160	444	Predicted GTPases [General function prediction onl	98.6
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.59
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.58
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.58
CHL00071	409	tufA elongation factor Tu	98.57
COG1159	298	Era GTPase [General function prediction only]	98.55
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	98.53
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.52
COG0218	200	Predicted GTPase [General function prediction only	98.51
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.5
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.49
PRK00049	396	elongation factor Tu; Reviewed	98.49
COG1084	346	Predicted GTPase [General function prediction only	98.46
PLN03127	447	Elongation factor Tu; Provisional	98.45
PRK12740	668	elongation factor G; Reviewed	98.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.44
COG1163	365	DRG Predicted GTPase [General function prediction	98.43
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	98.42
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.4
PRK12739	691	elongation factor G; Reviewed	98.4
PTZ00141	446	elongation factor 1- alpha; Provisional	98.39
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.37
KOG0090	238	consensus Signal recognition particle receptor, be	98.37
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.36
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.36
PTZ00258	390	GTP-binding protein; Provisional	98.34
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.31
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.26
PRK00007	693	elongation factor G; Reviewed	98.25
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.22
COG2262	411	HflX GTPases [General function prediction only]	98.21
PRK07560	731	elongation factor EF-2; Reviewed	98.19
PRK09601	364	GTP-binding protein YchF; Reviewed	98.19
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.18
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.18
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	98.17
PTZ00416	836	elongation factor 2; Provisional	98.15
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.14
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.1
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.08
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.05
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.01
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.0
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.99
PRK14845	1049	translation initiation factor IF-2; Provisional	97.99
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.93
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.86
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.8
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	97.78
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	97.75
COG1161	322	Predicted GTPases [General function prediction onl	97.73
PRK13768	253	GTPase; Provisional	97.71
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	97.7
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.7
PRK12288	347	GTPase RsgA; Reviewed	97.61
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.58
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.57
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.56
PRK12289	352	GTPase RsgA; Reviewed	97.56
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.54
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.51
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.46
COG0536	369	Obg Predicted GTPase [General function prediction	97.45
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.44
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.43
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.4
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.4
PRK09866	741	hypothetical protein; Provisional	97.39
KOG0462	650	consensus Elongation factor-type GTP-binding prote	97.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.38
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.33
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	97.32
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	97.31
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.3
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.21
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.2
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.18
PRK00098	298	GTPase RsgA; Reviewed	97.17
COG0012	372	Predicted GTPase, probable translation factor [Tra	97.17
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	97.16
PRK13796	365	GTPase YqeH; Provisional	97.14
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.11
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	97.06
COG1162	301	Predicted GTPases [General function prediction onl	97.04
KOG1145	683	consensus Mitochondrial translation initiation fac	96.98
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.96
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.95
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	96.78
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.74
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.64
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.57
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.56
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.56
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	96.49
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	96.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	96.42
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	96.39
PRK08118	167	topology modulation protein; Reviewed	96.39
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	96.38
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.35
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.28
PRK07261	171	topology modulation protein; Provisional	96.25
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.21
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.14
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.13
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.08
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.07
KOG0099	379	consensus G protein subunit Galphas, small G prote	96.04
smart00382	148	AAA ATPases associated with a variety of cellular	95.97
PF00004	132	AAA: ATPase family associated with various cellula	95.94
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.89
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	95.88
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	95.88
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	95.84
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.82
cd03111	106	CpaE_like This protein family consists of proteins	95.76
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	95.71
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	95.71
PRK06217	183	hypothetical protein; Validated	95.66
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.64
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.62
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.6
PF05729	166	NACHT: NACHT domain	95.59
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.59
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.57
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.56
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	95.54
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	95.52
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	95.5
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	95.49
PRK14738	206	gmk guanylate kinase; Provisional	95.49
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.46
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	95.45
PRK14737	186	gmk guanylate kinase; Provisional	95.44
PF13173	128	AAA_14: AAA domain	95.44
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.38
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	95.37
PRK10646	153	ADP-binding protein; Provisional	95.33
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	95.33
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	95.3
KOG0410	410	consensus Predicted GTP binding protein [General f	95.3
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	95.24
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	95.22
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	95.17
PRK14530	215	adenylate kinase; Provisional	95.16
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.13
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	95.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.11
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	95.11
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	95.09
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	95.08
PRK00300	205	gmk guanylate kinase; Provisional	95.08
COG4525	259	TauB ABC-type taurine transport system, ATPase com	95.08
PRK08233	182	hypothetical protein; Provisional	95.04
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.04
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.01
PRK03839	180	putative kinase; Provisional	95.0
PRK13695	174	putative NTPase; Provisional	95.0
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	94.97
COG0802	149	Predicted ATPase or kinase [General function predi	94.92
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.89
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	94.87
PRK14532	188	adenylate kinase; Provisional	94.86
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	94.79
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	94.79
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	94.77
PRK01889	356	GTPase RsgA; Reviewed	94.75
KOG2486	320	consensus Predicted GTPase [General function predi	94.74
PRK13949	169	shikimate kinase; Provisional	94.72
COG3638	258	ABC-type phosphate/phosphonate transport system, A	94.72
PRK14531	183	adenylate kinase; Provisional	94.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.68
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	94.67
PRK02496	184	adk adenylate kinase; Provisional	94.65
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	94.65
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.64
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	94.62
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	94.61
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	94.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	94.59
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	94.59
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	94.58
PRK05480	209	uridine/cytidine kinase; Provisional	94.54
PF13479	213	AAA_24: AAA domain	94.54
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	94.52
cd01128	249	rho_factor Transcription termination factor rho is	94.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	94.49
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	94.48
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	94.46
PTZ00088	229	adenylate kinase 1; Provisional	94.45
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	94.45
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	94.44
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	94.37
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.36
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	94.35
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	94.35
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	94.35
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.33
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	94.33
PHA00729	226	NTP-binding motif containing protein	94.31
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	94.31
PRK05057	172	aroK shikimate kinase I; Reviewed	94.31
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	94.29
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	94.27
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	94.27
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	94.24
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	94.24
PLN02165	334	adenylate isopentenyltransferase	94.23
PRK13851	344	type IV secretion system protein VirB11; Provision	94.23
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	94.23
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.23
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	94.22
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	94.21
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	94.2
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.19
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.18
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	94.16
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	94.15
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	94.15
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	94.14
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	94.13
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	94.12
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	94.11
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	94.11
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	94.1
PRK14528	186	adenylate kinase; Provisional	94.09
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	94.07
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	94.04
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.04
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.03
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.03
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	94.02
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.01
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	94.01
PRK06547	172	hypothetical protein; Provisional	94.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	93.99
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	93.98
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	93.97
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	93.97
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.97
cd03216	163	ABC_Carb_Monos_I This family represents the domain	93.96
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	93.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	93.96
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	93.95
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	93.94
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	93.93
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	93.93
PRK06762	166	hypothetical protein; Provisional	93.92
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	93.92
PRK00279	215	adk adenylate kinase; Reviewed	93.91
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	93.91
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	93.9
PRK08099	399	bifunctional DNA-binding transcriptional repressor	93.9

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-34  Score=229.69  Aligned_cols=114  Identities=23%  Similarity=0.473  Sum_probs=110.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..|||+++||+|||||||+.||.++.|. .+..|+|.||..+.+.++|+.++++||||+|||+|+.+...||++|+|+|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            3899999999999999999999999999 888899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+|+++||+++..|+++++++..+++|++||+.
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGN  122 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGN  122 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEee
Confidence            99999999999999999999999999999998864

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.9e-32  Score=213.74  Aligned_cols=119  Identities=19%  Similarity=0.451  Sum_probs=109.5

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC
Q 028037           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD  171 (215)
Q Consensus        93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~  171 (215)
                      ........+|++++||.+|||||||.||+.+.|. .|.+|+|+||-.+++.+.+..+.|++|||+|||+|+.+.+.|+++
T Consensus        15 ~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rd   94 (221)
T KOG0094|consen   15 TFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   94 (221)
T ss_pred             ccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccC
Confidence            4445566799999999999999999999999999 888999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCC-CceEEEEe
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQV-TKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~-~~piIlVa  211 (215)
                      +.++|+|||++|++||++..+|++++++..+. ++-|+||.
T Consensus        95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVG  135 (221)
T KOG0094|consen   95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVG  135 (221)
T ss_pred             CeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEc
Confidence            99999999999999999999999999998765 45555553

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.9e-30  Score=205.82  Aligned_cols=114  Identities=25%  Similarity=0.465  Sum_probs=107.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+|++++|+.+||||||+.||..+.|.+ ..+|+|..|.++++.+++..++|+||||+|||+|..+.++||++|+++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            357999999999999999999999999995 4789999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+|+.+||..++.|++++++..++++.|.||.
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvG  117 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVG  117 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence            99999999999999999999999988777776664

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-30  Score=206.95  Aligned_cols=115  Identities=21%  Similarity=0.432  Sum_probs=110.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++||++||||+|+.+|.++.|. .+..|+|+||..+++.+++..+.+++|||+|||+|..+...||++|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            344799999999999999999999999999 8888999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|||++++.||+++..|+..|+++.++++|++||.
T Consensus        89 ~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvG  124 (207)
T KOG0078|consen   89 LLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVG  124 (207)
T ss_pred             EEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEee
Confidence            999999999999999999999999998899999885

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8e-30  Score=204.82  Aligned_cols=114  Identities=25%  Similarity=0.469  Sum_probs=110.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..|||+++||++||||-|+.||..++|. +..+|+|.++.+..+.++++.++.+||||+|||+|+.+...||++|.|.++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            3799999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+|.+.||+++.+|+.+++.+.+++++|+||..
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGN  127 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGN  127 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence            99999999999999999999999999999999863

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=196.25  Aligned_cols=114  Identities=25%  Similarity=0.480  Sum_probs=104.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+.+|..+.|.+..+ |+|.||..+.+.++|..+++.||||+|||+|+.+.+.||++|.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            347999999999999999999999999995555 6999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      +|||+|.++||.++..|++++..++. +++..++|+
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVg  124 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVG  124 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhc
Confidence            99999999999999999999999985 555555554

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-29  Score=199.81  Aligned_cols=114  Identities=18%  Similarity=0.413  Sum_probs=109.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+|++++||.|||||+|+.||++..|. .+..|+|++|..+.+.+++++++|+||||+|||.|+.+...||+++.|.||
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL   84 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL   84 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence            4799999999999999999999999999 777899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++++||+.+..|+.+++++..+|+.|+|++.
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGN  119 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGN  119 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence            99999999999999999999999888999888763

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=5.7e-30  Score=195.36  Aligned_cols=111  Identities=19%  Similarity=0.465  Sum_probs=105.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+|.+++||+|||||||+.+|.++.|. .|..|+|.|+..+++.++|..++|+|||++|||+|+.+...||++.+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            478999999999999999999999999 8888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||+||.+||.++++|+++++.+++ .+|-+||.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVG  119 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVG  119 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcCc-cccceecc
Confidence            999999999999999999999994 68877764

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=1.9e-28  Score=193.13  Aligned_cols=114  Identities=21%  Similarity=0.361  Sum_probs=106.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++||+|||||||+++|.+.+|. .+..|+|.+|..+.+.+++..+.++||||+|||+|..+.-.+|+++|+++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            34699999999999999999999999999 88889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      +|||+++++||+++..|.+++..+..    +..|.||+.
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG  125 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG  125 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence            99999999999999999999977664    468877764

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.1e-28  Score=183.71  Aligned_cols=117  Identities=23%  Similarity=0.496  Sum_probs=110.3

Q ss_pred             CCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC
Q 028037           94 TDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA  172 (215)
Q Consensus        94 ~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a  172 (215)
                      ...++ .+|++++|++.||||||+.||.++.|. .+..|.|++|..+++.-..+.++++||||+|||+|+.+...||+++
T Consensus        16 qnFDy-mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   16 QNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             ccccc-eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            34445 569999999999999999999999999 8999999999999998889999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++|+|||++|.+||+.++.|..+|+.++-.++|+|||.
T Consensus        95 mgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvg  133 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVG  133 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEe
Confidence            999999999999999999999999999998999999885

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=1.1e-27  Score=195.92  Aligned_cols=112  Identities=21%  Similarity=0.431  Sum_probs=105.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +.|+++|+.|||||||+++|.++.|. ++.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999998 67789999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |++|++||++++.|++.+++....++|+|||+.
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgN  113 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGN  113 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            999999999999999999888767899988874

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.2e-28  Score=186.20  Aligned_cols=112  Identities=21%  Similarity=0.445  Sum_probs=106.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|..|||||+|+.+|..+-|+ ....|+|.+|+.+++.++|.+++++||||+|||+|+.+.+.||+.|+++|++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            689999999999999999999999999 7778999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||++...||+-+.+|+.+|.++...++-.|||.
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvg  119 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVG  119 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeec
Confidence            999999999999999999999997776666664

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.9e-28  Score=187.06  Aligned_cols=112  Identities=21%  Similarity=0.442  Sum_probs=107.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+|++++|+.|.|||+|+++|+.++|. +...|+|.+|.++.+.+.++.++++||||+|||+|+...+.||++|.+.++|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            689999999999999999999999999 6667999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||+++++||+.+..|+.+++...++++.|||+.
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~G  121 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTLASPNIVVILCG  121 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeC
Confidence            999999999999999999999998999888874

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=8e-27  Score=186.93  Aligned_cols=109  Identities=21%  Similarity=0.425  Sum_probs=100.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+.+|+++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..++..++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            69999999999999999999999999 7888888766 466788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037          180 DLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |+++++||+++ +.|++++++.. +++|++||+
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvg  112 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVG  112 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            99999999999 68999998876 579999987

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.95  E-value=7e-27  Score=188.20  Aligned_cols=112  Identities=25%  Similarity=0.415  Sum_probs=102.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+.+|.++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..+++.+|+++|++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            4789999999999999999999999998 7778888666 4678889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++++||+++ ..|+++++++. ++.|++||+.
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgN  117 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC  117 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeE
Confidence            9999999999998 79999999887 5789888864

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=7.3e-27  Score=189.21  Aligned_cols=112  Identities=21%  Similarity=0.422  Sum_probs=105.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|+.|||||||+.+|.++.|. ++.++.+.++..+.+.+++..+.+++||++|+++|..++..|++++|++|+|
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV   85 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV   85 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence            599999999999999999999999998 6667889999888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++.++. +++|+|||+.
T Consensus        86 fD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGN  118 (189)
T cd04121          86 YDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGN  118 (189)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999999999999998876 5799999874

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=1.2e-26  Score=186.69  Aligned_cols=112  Identities=51%  Similarity=0.864  Sum_probs=104.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|+++.|. ++.+|+|.++..+.+.+++..+.++|||++|+++|..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999 78899999998889999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |++|++||+++..|++++++..+.+.|+++.+|
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK  113 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTK  113 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            999999999999999999887766788776665

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04131 Rnd Rnd subfamily

Probab=99.95  E-value=1.1e-26  Score=186.32  Aligned_cols=111  Identities=24%  Similarity=0.411  Sum_probs=101.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|++|||||||+++|.++.|. ++.+|++.++ .+.+.+++..++++||||+|+++|..+.+.+|+++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            479999999999999999999999999 7778888776 46788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++ ..|++++++++ +++|++||+-
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgn  113 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGC  113 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEE
Confidence            999999999996 79999999887 5788888863

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=1.4e-26  Score=187.28  Aligned_cols=112  Identities=18%  Similarity=0.322  Sum_probs=101.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+.+|..+.|. ++.+|++.++ .+.+.+++..+.++||||+|+++|..+++.||+++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            4589999999999999999999999998 7778888665 4556789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||++|++||+++. .|++++.+.. +++|++||+.
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgN  115 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGT  115 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEe
Confidence            99999999999997 6999998765 5799988874

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=2.3e-26  Score=188.19  Aligned_cols=112  Identities=21%  Similarity=0.308  Sum_probs=101.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-----CeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-----~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      +||+++|++|||||||+++|+++.|. ++.+|+|.++..+.+.++     +..+.++|||++|+++|..+++.||+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            58999999999999999999999998 777899988888877774     578999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhH-------------------CCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKW-------------------NQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~-------------------~~~~~piIlVa~  212 (215)
                      +|+|||+++++||+++..|++++.+.                   .+.++|+|||+.
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn  137 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT  137 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence            99999999999999999999999764                   235799999874

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.94  E-value=5.8e-26  Score=189.38  Aligned_cols=113  Identities=23%  Similarity=0.367  Sum_probs=102.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+.+|+++.|. ++.+|++.++. +.+.+++..+.++||||+|+++|..+.+.||+++|++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45799999999999999999999999999 78889887764 56888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++ ..|++++++.. +++|+|||+.
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgN  125 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGC  125 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999999985 79999999876 5688887763

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=1.6e-26  Score=178.38  Aligned_cols=116  Identities=28%  Similarity=0.461  Sum_probs=108.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ...+||++++|..-||||||+-||++++|. ....|....|..+.+.+++....+.||||+|||+|..+-+.||+++++.
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            345899999999999999999999999999 7778999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++|||+||++||+.++.|..++++..+..+-++||..
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGN  126 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGN  126 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecC
Confidence            9999999999999999999999999887788777753

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=1.5e-25  Score=176.27  Aligned_cols=113  Identities=21%  Similarity=0.436  Sum_probs=104.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.+++|. .+.+|++.++..+.+.+++..+++++||++|+++|..++..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            489999999999999999999999998 6667889999888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+++++....++.|++||+.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~n  115 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGN  115 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            9999999999999999999887767788888764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=2.1e-25  Score=178.11  Aligned_cols=110  Identities=19%  Similarity=0.334  Sum_probs=99.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.++.|. ++.+|++.++. ..+.+++..++++||||+|+++|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999997 78888887664 55778899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++. .|++++++.. +++|+|||+.
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgn  113 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGT  113 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            999999999997 6999998765 5789988864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=1.2e-25  Score=175.50  Aligned_cols=111  Identities=23%  Similarity=0.463  Sum_probs=105.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      ||+++|+.+||||||+++|.++.|. .+.+|.|.++..+.+.+++..+.++|||++|+++|..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999 788899999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++++||+++..|++++....+.+.|++||+.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~  112 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGN  112 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred             ccccccccccccccccccccccccccceeeec
Confidence            99999999999999999999876799999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=2.7e-25  Score=174.64  Aligned_cols=112  Identities=23%  Similarity=0.501  Sum_probs=104.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.+++|. .+.+|.+.++..+.+.+++..+++++||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998 67889999998888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|++++......++|+++|+.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgn  113 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGN  113 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            999999999999999999888766899988874

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.93  E-value=1.6e-25  Score=185.65  Aligned_cols=111  Identities=23%  Similarity=0.416  Sum_probs=100.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+.+|.++.|. ++.||++.++. ..+.+++..+.|+||||+|+++|..+++.+|+++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999999 78889887764 6778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++ ..|..+++... +++|+|||+-
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgn  113 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGC  113 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEE
Confidence            999999999999 47888887766 6799988863

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.93  E-value=3.8e-25  Score=182.86  Aligned_cols=114  Identities=21%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|+.++|. .+.+|+|.++....+..++..+++++|||+|+++|..++..||++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            55799999999999999999999999998 78889999998888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++++.+.. .++|++||+.
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgN  125 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN  125 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEE
Confidence            9999999999999999999998876 5789888863

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=2.6e-26  Score=177.99  Aligned_cols=112  Identities=21%  Similarity=0.463  Sum_probs=102.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..++++++||+-||||||++.|.+++|. -..||+|.||+.+.+.+ +|..++|++|||+|||+|+.+...||+++.+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            3689999999999999999999999999 66789999999998888 589999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEE
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFF  210 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlV  210 (215)
                      +|||++|++||+.++.|+.+...+-+ ++.++.++
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlL  121 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLL  121 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEE
Confidence            99999999999999999999988765 55555443

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=4.3e-25  Score=179.65  Aligned_cols=112  Identities=21%  Similarity=0.401  Sum_probs=102.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +||+++|++|||||||+++|+++.|. .+.+|+|.++..+.+.++ +..+.+++|||+|+++|..+++.+|++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            69999999999999999999999998 778899999988888888 8899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++....    ..++|+|||+.
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N  118 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLAN  118 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence            99999999999999999997642    35789888763

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.93  E-value=5e-25  Score=175.00  Aligned_cols=111  Identities=22%  Similarity=0.395  Sum_probs=101.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      ||+++|++|||||||+++|+++.|. ++.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            8999999999999999999999999 788899999988888999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +++++||+++..|++++.+.. +.+.|+++|+.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgn  114 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGT  114 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            999999999999999987654 44678777653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=5.5e-25  Score=190.08  Aligned_cols=118  Identities=22%  Similarity=0.321  Sum_probs=104.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-------------eEEEEEEEecCCCCC
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSR  160 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-------------~~~~l~i~Dt~G~e~  160 (215)
                      ......+||+++|+.|||||||+++|+++.|. .+.+|+|.++..+.+.+++             ..+.++||||+|+++
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            33555799999999999999999999999998 7778999999888887752             568999999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC------------CCceEEEEee
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ------------VTKQSLFFHI  212 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~------------~~~piIlVa~  212 (215)
                      |..+++.||++++++|+|||+++++||+++..|++++.+...            .++|++||+.
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN  159 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN  159 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence            999999999999999999999999999999999999987631            3588888874

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.93  E-value=8.4e-26  Score=182.17  Aligned_cols=111  Identities=17%  Similarity=0.355  Sum_probs=103.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..+|+++|||++||||+|+..|..+.|+ +|.||+- |-+...+.++ |+.+.+.+|||+|||+|+.+++..|.++|+||
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            4689999999999999999999999999 7777776 5566788995 99999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +||++.+++||++++ +|++++++++ +++|+|||+
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVG  116 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVG  116 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEe
Confidence            999999999999996 8999999999 889999997

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=9.3e-25  Score=170.46  Aligned_cols=112  Identities=17%  Similarity=0.358  Sum_probs=103.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|++++|. .+.++.+.++..+.+.+++..+.+++|||+|++++..+++.+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998 78889999998889999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ-----VTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~-----~~~piIlVa~  212 (215)
                      |+++++||+.+..|+.++.++..     .+.|+++|+.
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~n  118 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCAN  118 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEE
Confidence            99999999999999999988764     4688888763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.92  E-value=5.1e-27  Score=176.62  Aligned_cols=107  Identities=21%  Similarity=0.487  Sum_probs=99.9

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       104 vllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      +++||+++|||+|+.||.++.|-  ...+|+|+||..+.+.+++.+++++||||+|||+|+.....||+++|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47999999999999999999998  5678999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          182 TSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      +|+.||++++.|+.+|.++.++.+.+.|+
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~ll  109 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLL  109 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhh
Confidence            99999999999999999998776655544

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=1.1e-24  Score=171.43  Aligned_cols=112  Identities=21%  Similarity=0.499  Sum_probs=103.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.+++|. .+.+|.|.++....+..++..+.+++||++|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998 77889998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|++++.+....+.|+++|+.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n  114 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGN  114 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEE
Confidence            999999999999999999887766788888764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=1.4e-24  Score=170.49  Aligned_cols=113  Identities=20%  Similarity=0.469  Sum_probs=105.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.++.+.++..+.+.+++..+++++||++|+++|..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            489999999999999999999999998 7778889899888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++|++||+++..|++++.+...++.|+++|+.
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~n  115 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN  115 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999999999999999999888766789888874

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.92  E-value=1.1e-24  Score=171.60  Aligned_cols=113  Identities=19%  Similarity=0.457  Sum_probs=105.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            589999999999999999999999999 7788999998888888999899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++.+....++|+++|+.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n  116 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGN  116 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999999999999999999987767889888763

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=1.6e-24  Score=172.77  Aligned_cols=111  Identities=21%  Similarity=0.433  Sum_probs=99.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+.+|.++.|. ++.+|.+ +.+.+.+.+++..++++||||+|+++|..+++.+++++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            379999999999999999999999998 7777776 44456677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++. .|++.+.... +++|++||+.
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgn  113 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGT  113 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEee
Confidence            9999999999996 6999998765 5799999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=1.7e-24  Score=168.84  Aligned_cols=112  Identities=15%  Similarity=0.254  Sum_probs=99.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|+++.|. .+.+|++ +.+.+.+.+++..+.++||||+|+++|..++..|++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            379999999999999999999999998 6666776 55567788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++.+... .++|++||+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  114 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGN  114 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            999999999999999999987643 5789887763

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.92  E-value=1.8e-24  Score=172.15  Aligned_cols=112  Identities=10%  Similarity=0.138  Sum_probs=100.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.+++|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999998 6777888655 45678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||++|++||+++..|+..+.+.. ..++|++||+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgN  115 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGN  115 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            99999999999999999988754 36799888864

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=3.3e-24  Score=169.47  Aligned_cols=111  Identities=23%  Similarity=0.365  Sum_probs=102.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|+++.|. .+.+|.+.++....+..++..+.+.+|||+|++++..++..++.++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            59999999999999999999999988 77889998988888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|+.++.+... ++|+++|+-
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~n  112 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGN  112 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence            99999999999999999998874 799888763

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04124 RabL2 RabL2 subfamily

Probab=99.92  E-value=3.5e-24  Score=168.16  Aligned_cols=111  Identities=26%  Similarity=0.473  Sum_probs=101.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.+++|. .+.++.+.+++.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998 66667788888788888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |++++.||+++..|++++++.. +++|+++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~n  112 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVAN  112 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEE
Confidence            9999999999999999998765 5688877764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04125 RabA_like RabA-like subfamily

Probab=99.92  E-value=2.7e-24  Score=172.80  Aligned_cols=112  Identities=20%  Similarity=0.413  Sum_probs=104.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.++.|. .+.+|.|.++..+.+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999998 68889999988888899988999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|++++.+....+.|+++|+.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~n  113 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVAN  113 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            999999999999999999988766788877764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=99.92  E-value=3.6e-24  Score=172.63  Aligned_cols=114  Identities=12%  Similarity=0.205  Sum_probs=102.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|.+.++ .+.+.+++..+.+++|||+|+++|..++..|++++|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            34699999999999999999999999998 6667777665 577888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++++.+.. ..++|++||+.
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n  118 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN  118 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            9999999999999999999998764 35789887763

>cd04176 Rap2 Rap2 subgroup

Probab=99.92  E-value=3.9e-24  Score=167.31  Aligned_cols=112  Identities=14%  Similarity=0.225  Sum_probs=99.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|++|||||||+++|+++.|. .+.+|.+ +++...+.+++..+.++||||+|+++|..++..|++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            479999999999999999999999998 5555554 66667888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ||++|++||+++..|+.++.+... .++|++||+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~n  114 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN  114 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            999999999999999999987643 6789887753

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03110 Rab GTPase; Provisional

Probab=99.92  E-value=5.5e-24  Score=175.45  Aligned_cols=114  Identities=26%  Similarity=0.464  Sum_probs=106.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.|. ++.+|+|.++..+.+.+++..++++|||++|+++|..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            3689999999999999999999999998 788899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++++||+++..|+..+++....++|+++|+.
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~n  125 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN  125 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            99999999999999999999988777899888764

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=4.3e-24  Score=167.70  Aligned_cols=113  Identities=27%  Similarity=0.478  Sum_probs=103.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|+|||||+++|.++.|. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv   82 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA   82 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            689999999999999999999999998 6677888888888888999889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++......++|+++|+.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n  116 (165)
T cd01864          83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN  116 (165)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999999999999999999887667788877763

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=6.5e-24  Score=167.29  Aligned_cols=113  Identities=24%  Similarity=0.428  Sum_probs=103.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|+++||||||+++|.++.|. .+.++.|.++..+.+.+++..+.++|||++|++++..++..+++++|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            4699999999999999999999999998 677888999888888999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      |||+++++||+.+..|+.++.+...    .++|++||+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            9999999999999999999877542    468987775

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=5.7e-24  Score=166.68  Aligned_cols=112  Identities=24%  Similarity=0.487  Sum_probs=104.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|+++||||||+++|.+++|. .+.++.+.++..+.+..++..+.+++||++|++++..++..++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            489999999999999999999999998 7888999999889999999889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||+++++||+++..|++++.+....+.|++||+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~  115 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVG  115 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence            999999999999999999998876679988765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=3.6e-24  Score=174.90  Aligned_cols=106  Identities=21%  Similarity=0.333  Sum_probs=99.6

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          106 LGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       106 lGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +|++|||||||+++|+++.|. .+.+|+|.++..+.+.+++..++++||||+|+++|..++..||+++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            699999999999999999998 7788999999989889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          185 CTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       185 ~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +||+++..|++++++.+ .++|++||+.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgN  107 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGN  107 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999999999876 5799988874

Ran is involved in the active transport of proteins through nuclear pores.

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=6.3e-24  Score=165.78  Aligned_cols=112  Identities=23%  Similarity=0.458  Sum_probs=104.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||++++.++++. .+.++.+.++....+.+++..+.+++||++|+++|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            59999999999999999999999998 77778898888888899998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|+++++....+++|++||+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~n  113 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGN  113 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            999999999999999999887778899888763

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04110 Rab35 Rab35 subfamily

Probab=99.91  E-value=5.8e-24  Score=172.95  Aligned_cols=112  Identities=18%  Similarity=0.411  Sum_probs=103.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.+|.+.++..+.+.+++..+.++|||++|++.|..++..++++++++++|
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            689999999999999999999999998 7788999999888888899899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+.+..|++++.... ...|++||+.
T Consensus        86 ~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgN  118 (199)
T cd04110          86 YDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGN  118 (199)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999999999999998766 5678776653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04134 Rho3 Rho3 subfamily

Probab=99.91  E-value=7.5e-24  Score=170.85  Aligned_cols=110  Identities=22%  Similarity=0.346  Sum_probs=98.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .||+++|++|||||||+++|.++.|. .+.+|.+.++. ..+.+++..+.++|||++|+++|..++..+++++|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999998 67778877654 56777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++. .|++++.... +++|++||+.
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgN  112 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVAL  112 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            999999999997 6999998766 5789888864

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.91  E-value=4.5e-24  Score=169.68  Aligned_cols=113  Identities=26%  Similarity=0.491  Sum_probs=101.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC----------CeEEEEEEEecCCCCCCCccchhh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPIA  168 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~----------~~~~~l~i~Dt~G~e~~~~~~~~~  168 (215)
                      .+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.++          +..+.++|||++|+++|..++..+
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF   83 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence            589999999999999999999999999 778899999887777664          467999999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ++++|++++|||+++++||+++..|++++.... ..+.|++||+.
T Consensus        84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n  128 (180)
T cd04127          84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGN  128 (180)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence            999999999999999999999999999998764 35788888764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04109 Rab28 Rab28 subfamily

Probab=99.91  E-value=5.3e-24  Score=175.24  Aligned_cols=111  Identities=25%  Similarity=0.476  Sum_probs=100.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +||+++|++|||||||+++|.++.|. .+.+|++.+++.+.+.+++ ..+.++||||+|++.+..++..|++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            59999999999999999999999998 7888999999988888864 679999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa  211 (215)
                      ||+++++||+++..|++++.+...   .+.|++||+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVg  116 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVG  116 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence            999999999999999999988653   356777664

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=8.1e-24  Score=167.02  Aligned_cols=113  Identities=19%  Similarity=0.429  Sum_probs=104.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++++. .+.++.|.++..+.+.+++..+.+++||++|++++..+...+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            489999999999999999999999998 6677889999888889999899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++++...+++|++||+.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~n  117 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGN  117 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999999999999999999887667899888764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04175 Rap1 Rap1 subgroup

Probab=99.91  E-value=8.5e-24  Score=165.70  Aligned_cols=112  Identities=15%  Similarity=0.241  Sum_probs=99.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|++|||||||+++|+.+.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            479999999999999999999999998 6667777555 46788889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  114 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN  114 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            99999999999999999997754 36789888763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=7.2e-24  Score=165.26  Aligned_cols=111  Identities=16%  Similarity=0.364  Sum_probs=101.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      +||+++|++|||||||+++|.++.|. ++.+|.+.++..+.+.++  +..+++++||++|+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            58999999999999999999999998 777899999887778777  788999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++++||+++..|++++.+.. .++|+++|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~n  114 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQT  114 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            999999999999999999998766 5788777763

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04118 Rab24 Rab24 subfamily

Probab=99.91  E-value=1.2e-23  Score=169.40  Aligned_cols=111  Identities=23%  Similarity=0.377  Sum_probs=101.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +||+++|++|||||||+++|+++.|.  .+.+|++.++..+.+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            58999999999999999999999997  4777899888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+++++... .++|++||+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~n  113 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGT  113 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEE
Confidence            99999999999999999998764 5789877764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.91  E-value=1.4e-23  Score=165.09  Aligned_cols=106  Identities=20%  Similarity=0.368  Sum_probs=91.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +||+++|++|||||||+.+|+++.|.+..++++.++ .+.+.+++..+.+++||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999999984444555555 47788999999999999999985     357789999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ++|++||+++..|++++.++.. .++|++||+.
T Consensus        75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgn  107 (158)
T cd04103          75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGT  107 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence            9999999999999999988764 6789888764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.91  E-value=1e-23  Score=166.71  Aligned_cols=113  Identities=22%  Similarity=0.487  Sum_probs=103.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-ccchhhccCCcEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF  177 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~iil  177 (215)
                      .+||+++|++|||||||+++|..+.|. .+.++.+.++..+.+.+++..+.+++||++|+++|. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            489999999999999999999999998 777889999988899999999999999999999986 578889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||+++++||+++..|++++.+.. ..++|+++|+-
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~n  117 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGN  117 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            999999999999999999998865 36799888864

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=9.8e-24  Score=170.34  Aligned_cols=112  Identities=26%  Similarity=0.552  Sum_probs=103.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +||+++|++|||||||+++|.+++|.  .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            59999999999999999999999986  5667888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+....++|+++|+.
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~N  114 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGN  114 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            9999999999999999999988777899988753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.8e-24  Score=164.44  Aligned_cols=112  Identities=21%  Similarity=0.446  Sum_probs=107.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      -+|.+++||-|||||+|+++|.+.+|. +...|+|.+|..+.+.+.|.+++++||||+|||+|+...+.||+++.+.++|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            689999999999999999999999999 8888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||++.+++++.+..|+.+.+....++..|+|+.
T Consensus        91 yditrrstynhlsswl~dar~ltnpnt~i~lig  123 (215)
T KOG0097|consen   91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIG  123 (215)
T ss_pred             EEehhhhhhhhHHHHHhhhhccCCCceEEEEec
Confidence            999999999999999999999888888887764

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.91  E-value=9.2e-24  Score=177.76  Aligned_cols=111  Identities=15%  Similarity=0.273  Sum_probs=99.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|++++|. .+.+|++ +++.+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998 6667776 777788899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH---------CCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKW---------NQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~---------~~~~~piIlVa~  212 (215)
                      |+++++||+++..|++++.+.         ...++|+|||+.
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN  121 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN  121 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence            999999999999999999754         235789888764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04111 Rab39 Rab39 subfamily

Probab=99.91  E-value=1.4e-23  Score=172.51  Aligned_cols=112  Identities=22%  Similarity=0.495  Sum_probs=101.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      .+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+ ++..+++++|||+|+++|..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999998 67789999999888887 4778999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |||++|++||+++..|++++.+... ...|++||+
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvg  116 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVG  116 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            9999999999999999999987654 457776664

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.91  E-value=1.9e-23  Score=162.16  Aligned_cols=112  Identities=13%  Similarity=0.222  Sum_probs=99.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.+|.+..+ .+.+.+++..+.+++||++|+++|..++..|+++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            379999999999999999999999998 6666776544 56778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+... .+.|++||+-
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n  114 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGN  114 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            999999999999999999988753 5788877653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01861 Rab6 Rab6 subfamily

Probab=99.91  E-value=2.7e-23  Score=161.84  Aligned_cols=112  Identities=20%  Similarity=0.447  Sum_probs=103.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|+++||||||++++.++++. .+.++.+.++..+.+.+++..+++++||++|++++..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999998 77788999999999999988899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+.+..|++++.+....++|+++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~n  113 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGN  113 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            999999999999999999876655799888864

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.91  E-value=3.6e-23  Score=164.08  Aligned_cols=110  Identities=24%  Similarity=0.425  Sum_probs=96.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +|++++|++|||||||+.+|.++.|. ++.+| +.+++...+.+++..+++++||++|+++|..++..+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc-eeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            58999999999999999999999999 55544 45666778888998999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |++|++||+++. .|+.++++.. ++.|+++|+.
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~n  112 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGT  112 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEee
Confidence            999999999995 7999998654 4688777764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.90  E-value=2.3e-23  Score=166.92  Aligned_cols=110  Identities=18%  Similarity=0.386  Sum_probs=96.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +||+++|++|||||||+++|.++.|. .+.++++.++.. .+..+ +..++++||||+|+++|..+++.+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            58999999999999999999999998 777788777654 45554 7889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++. .|+.++.... .++|++||+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~n  113 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGL  113 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEe
Confidence            9999999999996 6999988765 5789888763

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=99.90  E-value=1.9e-23  Score=168.47  Aligned_cols=109  Identities=16%  Similarity=0.257  Sum_probs=96.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      ||+++|++|||||||+++|+++.|. .+.+|++..+ .+.+.+++..+.++||||+|+++|..++..|++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6999999999999999999999998 6667777554 4567788889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH  211 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa  211 (215)
                      +++++||+++..|++.+.....   .++|+|||+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg  113 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVG  113 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            9999999999999999977542   578988775

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.90  E-value=3.1e-23  Score=171.77  Aligned_cols=108  Identities=21%  Similarity=0.358  Sum_probs=96.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +||+++|++|||||||+++|.+++|.++.+|+|.+++.+.+    ..+.+.||||+|+++|..++..|++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            58999999999999999999999998778889888765433    46889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++++||+++..|+..+.+....++|+|||+.
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgN  108 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGN  108 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            99999999999998888776656789888864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.90  E-value=6.3e-23  Score=162.05  Aligned_cols=108  Identities=19%  Similarity=0.430  Sum_probs=95.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      |+++|++|||||||+++|.++.|. .+.++.+..+ ...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            589999999999999999999998 6666666544 46678889999999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          182 TSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++++||+++. .|++++.+.. +++|++||+.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n  110 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGT  110 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEec
Confidence            9999999996 6999998876 5789888764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04140 ARHI_like ARHI subfamily

Probab=99.90  E-value=6.2e-23  Score=161.36  Aligned_cols=111  Identities=13%  Similarity=0.202  Sum_probs=97.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|+++.|. .+.++.+..+ .+.+..++..+.+++|||+|+++|..++..++++++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            79999999999999999999999998 6667776444 456667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~  212 (215)
                      |+++++||+++..|++.+++...   .++|++||+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  116 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGN  116 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence            99999999999999998877542   5789888764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=162.07  Aligned_cols=120  Identities=53%  Similarity=0.844  Sum_probs=113.6

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC
Q 028037           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD  171 (215)
Q Consensus        93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~  171 (215)
                      ++.++...+||-++||+.+|||||+.+|+++++. ++..+.|.++..+++.+.|..+.+.|||.+||+++..+.+..+++
T Consensus        13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d   92 (205)
T KOG1673|consen   13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD   92 (205)
T ss_pred             cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence            3446788999999999999999999999999998 777899999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +.+++++||++.++++++++.||.+.+..++..+||++--|
T Consensus        93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTK  133 (205)
T KOG1673|consen   93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTK  133 (205)
T ss_pred             cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccc
Confidence            99999999999999999999999999999999999998655

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.90  E-value=6.8e-23  Score=159.88  Aligned_cols=113  Identities=25%  Similarity=0.474  Sum_probs=104.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|++|||||||++++.++++. .+.++.+.++..+.+.+++..+++.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            479999999999999999999999998 5788889888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||.++++||+.+..|++.+......++|+++|+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~n  114 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGN  114 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            9999999999999999999887767788887764

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01892 Miro2 Miro2 subfamily

Probab=99.90  E-value=8.3e-23  Score=161.97  Aligned_cols=112  Identities=13%  Similarity=0.106  Sum_probs=100.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..+||+++|++|||||||+++|+++.|.  ++.+|++.++..+.+.+++..+.+.+||++|++++..++..+|+++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4689999999999999999999999996  56678898888888888998899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||.++++||+++..|++++...  .++|+++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~N  116 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAA  116 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEE
Confidence            999999999999999999877432  3689888764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=5.8e-23  Score=160.63  Aligned_cols=111  Identities=19%  Similarity=0.363  Sum_probs=99.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +||+++|++|||||||++++.++  .|. ++.++.|.++..+.+.++ +..+++.+||++|++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999975  677 777899999888888775 67799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++++.+.. .++|+++|+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~n  115 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGN  115 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            9999999999999999999998876 5678777653

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=7.2e-23  Score=168.05  Aligned_cols=113  Identities=19%  Similarity=0.403  Sum_probs=104.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.+++|. .+.++++.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++|
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv   85 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            599999999999999999999999998 6778999999888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++.+....+.|+++|+.
T Consensus        86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~n  119 (210)
T PLN03108         86 YDITRRETFNHLASWLEDARQHANANMTIMLIGN  119 (210)
T ss_pred             EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            9999999999999999999887767899888764

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.90  E-value=1e-22  Score=158.68  Aligned_cols=112  Identities=25%  Similarity=0.510  Sum_probs=104.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.+..+. .+.++.+.++....+..++..+.+++||++|++++..+...+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            59999999999999999999999988 67788898988888899998899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+.+..|++++..+..+++|+++|+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~n  113 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGN  113 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            999999999999999999988767899988874

Rab GTPases are implicated in vesicle trafficking.

>cd04142 RRP22 RRP22 subfamily

Probab=99.89  E-value=1.6e-22  Score=164.86  Aligned_cols=112  Identities=14%  Similarity=0.198  Sum_probs=96.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhccC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~~  171 (215)
                      +||+++|++|||||||+++|.+++|. .+.++++.+++...+.+++..+.++||||+|.+++...        ...++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999998 77888888887778888999999999999998765322        2345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI  212 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~  212 (215)
                      +|++|+|||+++++||+++..|++++.+..   ..++|++||+.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgN  124 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN  124 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            999999999999999999999999998764   46789888864

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-24  Score=168.01  Aligned_cols=112  Identities=26%  Similarity=0.498  Sum_probs=100.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC---------CeEEEEEEEecCCCCCCCccchhhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~---------~~~~~l~i~Dt~G~e~~~~~~~~~~  169 (215)
                      .+|.+.+||+|||||||+++|.++.|. ....|+|+||..+.+.++         +..+.+++|||+|||+|+.+...||
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            579999999999999999999999999 888999999999988773         3569999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      ++|-+|+++||+|+++||.++..|+.+++.+.= ++--|||+.
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcG  131 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCG  131 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEc
Confidence            999999999999999999999999999987642 444456553

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.89  E-value=1.5e-22  Score=158.26  Aligned_cols=111  Identities=14%  Similarity=0.220  Sum_probs=97.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.++.|. .+.++.+ +.+.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            59999999999999999999999998 5555655 445677788888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |+++++||+++..|+..+.+.. ..+.|+++|+.
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~n  113 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGN  113 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            9999999999999999987754 34789887653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.89  E-value=1.3e-22  Score=165.03  Aligned_cols=110  Identities=19%  Similarity=0.369  Sum_probs=89.1

Q ss_pred             eeeEEEEcCCCCCHHHHHH-HHhcCC-----CC-Ccccccee-eeEEEE--------EEECCeEEEEEEEecCCCCCCCc
Q 028037          100 SLKISLLGDCQIGKTSFVV-KYVGNE-----QE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD  163 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~-r~~~~~-----f~-~~~~t~g~-~~~~~~--------v~~~~~~~~l~i~Dt~G~e~~~~  163 (215)
                      .+||+++|++|||||||+. ++.++.     |. ++.||++. +.+...        +.+++..+.++||||+|++++  
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence            4799999999999999996 665543     44 56678863 433322        257899999999999999863  


Q ss_pred             cchhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          164 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +...+|+++|++|+|||+++++||+++. .|++++++.. +++|++||+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgN  128 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGC  128 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            5677899999999999999999999997 6999998876 5789888764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.89  E-value=3.6e-22  Score=155.76  Aligned_cols=112  Identities=12%  Similarity=0.189  Sum_probs=98.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|+++.+. ++.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            489999999999999999999999988 6666766444 55677888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++++.+.. ..++|++||+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~N  115 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN  115 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEee
Confidence            99999999999999999998764 35788877653

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PLN03118 Rab family protein; Provisional

Probab=99.89  E-value=4.7e-22  Score=162.98  Aligned_cols=113  Identities=27%  Similarity=0.506  Sum_probs=100.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.++.+.++.++.+.++....+.+++..+.+.||||+|+++|..++..+++++|++|+|
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv   92 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV   92 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999998887788999988888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHhHCC-CCceEEEEe
Q 028037          179 FDLTSRCTLNSIVG-WYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~-wl~~i~~~~~-~~~piIlVa  211 (215)
                      ||+++++||+++.. |...+..+.. .+.|++||+
T Consensus        93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~  127 (211)
T PLN03118         93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVG  127 (211)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999975 7777766543 456766654

>cd04135 Tc10 TC10 subfamily

Probab=99.88  E-value=7.4e-22  Score=155.94  Aligned_cols=109  Identities=17%  Similarity=0.336  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.+++|. .+.++.+ +.+...+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            59999999999999999999999998 5555554 445567788888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      |+++++||+++. .|++.+++. .++.|+++|+
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~  111 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVG  111 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEe
Confidence            999999999996 799999876 4678877765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.88  E-value=5.2e-22  Score=153.97  Aligned_cols=112  Identities=27%  Similarity=0.509  Sum_probs=101.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|+++.+. .+.++.+.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            59999999999999999999999998 56667777777778888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |++++++|+.+..|++++.+....++|+++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~n  113 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGN  113 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            999999999999999999988766889888764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.88  E-value=7.5e-22  Score=162.13  Aligned_cols=116  Identities=22%  Similarity=0.363  Sum_probs=105.3

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      ..+...+||+++|++|||||||+++|+.+.|. .+.+|.+.++....+..++..+.+++||++|+++|..++..++++++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            33455799999999999999999999999998 78889999998888888889999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|||++++.||+++..|+.++.+.. .++|+++|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~  120 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVG  120 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            9999999999999999999999998775 568887665

>cd01863 Rab18 Rab18 subfamily

Probab=99.88  E-value=8.6e-22  Score=153.52  Aligned_cols=112  Identities=24%  Similarity=0.496  Sum_probs=101.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..+...+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            59999999999999999999999998 67788898888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      |+++++||+.+..|++.+.++.. .+.|+++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~n  114 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGN  114 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEE
Confidence            99999999999999999988763 5788777653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04177 RSR1 RSR1 subgroup

Probab=99.88  E-value=7.9e-22  Score=155.51  Aligned_cols=112  Identities=18%  Similarity=0.237  Sum_probs=99.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.++.+.. +.+.+.+++..+.+++||++|+++|..++..++++++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            379999999999999999999999998 666677654 467788889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||++++++|+++..|.+++.+.. ..+.|+++|+.
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~n  114 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN  114 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence            99999999999999999997743 35799877653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.88  E-value=9.1e-22  Score=155.56  Aligned_cols=109  Identities=20%  Similarity=0.396  Sum_probs=96.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .||+++|++|||||||+++|.++.|. .+.++.+..+. ..+.+++..+.+.+|||+|+++|..++..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            69999999999999999999999998 66677776554 46778888999999999999999999989999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      |+++++||+++. .|+.++++.. .++|+++|+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  112 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG  112 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEe
Confidence            999999999996 6999988765 578988876

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.88  E-value=2.6e-22  Score=163.49  Aligned_cols=113  Identities=13%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|.+|||||+|+.+|+++.|. +|.||++ +.+.+.+.+++..+.+.|+||+|+++|..+...|++++|+|++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            4689999999999999999999999999 6666666 8888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||+++|+.||+.+..++++|.+.. ..++|++||+.
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGN  116 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGN  116 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEE
Confidence            999999999999999999995544 36789999874

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=6.6e-22  Score=155.24  Aligned_cols=110  Identities=15%  Similarity=0.299  Sum_probs=93.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~iilvf  179 (215)
                      ||+++|++|||||||+++|+++.|. ++.++.+..+ .+.+.+++..+.+++||++|++. +......+++++|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            7999999999999999999999998 6666665444 46677889999999999999996 3456778899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWN--QVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~--~~~~piIlVa~  212 (215)
                      |+++++||+++..|+..+.+..  ..++|+++|+.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n  114 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGN  114 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            9999999999999999998765  35788888763

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01862 Rab7 Rab7 subfamily

Probab=99.88  E-value=1.1e-21  Score=154.12  Aligned_cols=111  Identities=23%  Similarity=0.379  Sum_probs=100.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||++++.++.+. .+.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            59999999999999999999999988 66678888888888899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      |++++++|+++..|.+++.....    .++|+++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  116 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLG  116 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEE
Confidence            99999999999999998866543    378988774

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.87  E-value=8e-22  Score=155.61  Aligned_cols=106  Identities=13%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      .|+++|++|||||||+++|.++.|. ++.+|+|.++    ..+++..+++++||++|+++|..++..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            3799999999999999999999888 7778888653    3345667899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .+++++|++++.|+.++.+.. .++|++||+.
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~N  107 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLAN  107 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEe
Confidence            999999999999999987554 5788887753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04114 Rab30 Rab30 subfamily

Probab=99.87  E-value=3.4e-21  Score=151.28  Aligned_cols=113  Identities=21%  Similarity=0.436  Sum_probs=102.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||++++.++.+. .+.++.+.++..+.+.+++..+.+.+||++|++.|......+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            3699999999999999999999998888 667788888888888999999999999999999999988999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||+++++||+.+..|+++++.....++|+++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~  119 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVG  119 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence            9999999999999999999988776678866665

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.87  E-value=8e-22  Score=154.76  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=91.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +||+++|+++||||||++++..++|..+.+|+|.++.  .+..  ..+.+++||++|++++..++..||+++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            4899999999999999999999999877888887753  3333  46889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037          181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH  211 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa  211 (215)
                      +++++||+++..|+.++.+. ...+.|++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  108 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFA  108 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence            99999999999888877542 22457877775

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-23  Score=164.65  Aligned_cols=114  Identities=18%  Similarity=0.365  Sum_probs=107.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..-+|++++|..+|||+|+++|||.+-|. +|..|+|.++-...+.++++.+.+.+||++||++|+.+...||++|++.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            34689999999999999999999999999 88889999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+-+|+.||+.+..|++++.+.. ..+|.++|..
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqN  132 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQN  132 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeec
Confidence            9999999999999999999999887 6799888754

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.87  E-value=1.3e-21  Score=157.09  Aligned_cols=114  Identities=20%  Similarity=0.253  Sum_probs=99.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||++++..++|.++.+|.|.++....+.+ ++..+++++|||+|++++..++..+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            368999999999999999999999999866788888877666655 4467999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||.++.++|+.+..|+.++.+.. ..+.|++||+.
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~N  117 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLAN  117 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            999999999999999999987654 35688877653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=1.1e-21  Score=156.48  Aligned_cols=110  Identities=19%  Similarity=0.284  Sum_probs=94.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|..++|..+.+|+|.++..  +..  ..+.+++||++|++++..++..|++++|++|+|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            3689999999999999999999988888777888887653  333  358899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||++++++|+++..|+.++.+.. ..++|++||+.
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  122 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFAN  122 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence            99999999999999988875432 25688877753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.87  E-value=7.3e-22  Score=156.49  Aligned_cols=110  Identities=19%  Similarity=0.271  Sum_probs=93.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|+++||||||++++..++|..+.+|+|.++.  .+..  ..+++++|||+|++++..+++.+|+++|++++|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            368999999999999999999999888877788887764  2333  468899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      ||++++.+|+++..|+.++.+. ...++|++||+.
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  118 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDREMRDALLLVFAN  118 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEE
Confidence            9999999999999888777543 235688888764

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04148 RGK RGK subfamily

Probab=99.87  E-value=2.2e-21  Score=160.65  Aligned_cols=110  Identities=14%  Similarity=0.209  Sum_probs=94.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc-CCcEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF  177 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~-~a~~iil  177 (215)
                      +||+++|++|||||||+++|++++|.  .+.++.+.+++.+.+.+++..+.+++||++|++  ......+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            59999999999999999999999885  444555558888889999999999999999998  334455667 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      |||++|++||+++..|++++.+... .++|+|||+.
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N  114 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN  114 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            9999999999999999999987653 5789888863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=9.3e-22  Score=157.92  Aligned_cols=110  Identities=20%  Similarity=0.256  Sum_probs=93.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|+++||||||+++|..++|..+.+|+|.++.  .+.  ...+.+++||++|++++..++..||+++|++|+|
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V   91 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV   91 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            468999999999999999999999988877788887754  333  3458899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      ||++++++|+++..|+.++.+. .-.++|++||+.
T Consensus        92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~N  126 (181)
T PLN00223         92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFAN  126 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEE
Confidence            9999999999999888877542 225688888764

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.86  E-value=3.7e-21  Score=143.16  Aligned_cols=110  Identities=25%  Similarity=0.472  Sum_probs=89.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ||+++|+.|||||||+++|+++.+.   .+.++.+.++......+.+....+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999999886   2333445566666777777777899999999999988888889999999999


Q ss_pred             EeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIV---GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~---~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++.   .|+..++... .++|++||+-
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~n  116 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGN  116 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEe
Confidence            9999999999985   4666666655 5599999874

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00154 Rab Rab family

Probab=99.86  E-value=6.9e-21  Score=146.21  Aligned_cols=112  Identities=23%  Similarity=0.510  Sum_probs=103.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|+++||||||++++.++.+. .+.++.+.++....+..++..+.+.+||++|++.+......+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998 66788899999899999888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |.+++++++.+..|+..+......+.|+++|+.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n  113 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGN  113 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            999999999999999999988766788877753

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01893 Miro1 Miro1 subfamily

Probab=99.86  E-value=6.3e-21  Score=150.21  Aligned_cols=110  Identities=19%  Similarity=0.309  Sum_probs=91.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      .||+++|++|||||||+++|.++.|.+..++...++ .....+++..+++++|||+|++++...+..+++++|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            489999999999999999999999984445443333 3445567788999999999999988888888999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          181 LTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++++||+++. .|++.++... .++|+++|+.
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~n  111 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG-VKVPIILVGN  111 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999985 7999998766 4788777653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.86  E-value=6.9e-21  Score=154.63  Aligned_cols=110  Identities=12%  Similarity=0.217  Sum_probs=97.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      ||+++|++|||||||+++|+++.|. .+.++.+ ++..+.+.+++..+.+++||++|++.|..++..++.++|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            7999999999999999999999998 5555654 5666778888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ++++++|+++..|+..+.+... .++|+|||+.
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N  112 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGN  112 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            9999999999999999988754 5788888764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04158 ARD1 ARD1 subfamily

Probab=99.85  E-value=5.2e-21  Score=151.35  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=91.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      ||+++|+++||||||+++|.++.|..+.+|+|.++.  .+..  ..+.+++||++|++++..++..+++++|++++|||.
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            789999999999999999999988777888887764  2333  468899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +++++|+++..|+.++.+.. ..+.|++||+.
T Consensus        77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  108 (169)
T cd04158          77 SHRDRVSEAHSELAKLLTEKELRDALLLIFAN  108 (169)
T ss_pred             CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEe
Confidence            99999999999999987543 24578777653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.85  E-value=4.5e-21  Score=154.03  Aligned_cols=109  Identities=19%  Similarity=0.267  Sum_probs=92.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .+||+++|++|||||||++++..++|..+.+|+|.++.  .+..  ..+.+++||++|++++..++..|++++|++|+||
T Consensus        17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~   92 (182)
T PTZ00133         17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV   92 (182)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999998877788887764  3333  4588999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      |+++++||+++..|+.++.+. ...+.|++||+.
T Consensus        93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~N  126 (182)
T PTZ00133         93 DSNDRERIGDAREELERMLSEDELRDAVLLVFAN  126 (182)
T ss_pred             eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence            999999999999888777432 224678887753

>cd00157 Rho Rho (Ras homology) family

Probab=99.85  E-value=3.6e-20  Score=145.35  Aligned_cols=110  Identities=19%  Similarity=0.417  Sum_probs=94.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||+++|.++.+. .+.++.. +.....+..++..+.+++||++|++++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            58999999999999999999999997 6555554 444566677889999999999999999988999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||..+. .|+..+.... .+.|+++|+.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~n  112 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGT  112 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEc
Confidence            999999999885 6998888766 4788777753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.85  E-value=9.1e-21  Score=155.24  Aligned_cols=112  Identities=25%  Similarity=0.329  Sum_probs=100.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. .+.++++.++........+..+++.+|||+||++|+.+++.|+.+++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            499999999999999999999999999 6777888888877777776789999999999999999999999999999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTS-RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~-~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||.++ ..+++....|++++......+.|+++|.
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~  118 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVG  118 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEe
Confidence            99999 5555666799999999887679998886

>cd04129 Rho2 Rho2 subfamily

Probab=99.84  E-value=5.1e-20  Score=148.13  Aligned_cols=110  Identities=21%  Similarity=0.366  Sum_probs=95.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .|++++|+.|+|||||+++|..+.|. .+.++.+.++. ..+.+++..+.+.+||++|++.+....+.++++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            69999999999999999999999888 55666665554 46677888899999999999999888888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++. .|++.+++.. +++|++||+.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgn  113 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGL  113 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEee
Confidence            999999999997 6999998776 4689888763

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.84  E-value=4e-20  Score=143.79  Aligned_cols=110  Identities=13%  Similarity=0.222  Sum_probs=96.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +||+++|++|||||||++++.+++|. ++.++++.. ..+....++..+.+.+||++|++.+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            59999999999999999999999998 666666644 4566778889999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |+++++||+++..|+..+.+... .++|+++|+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~  112 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVG  112 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999999999988643 578877665

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=3.2e-20  Score=146.76  Aligned_cols=106  Identities=17%  Similarity=0.218  Sum_probs=90.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +|+++|++|||||||+++|.++ |. .+.+|.|.+.  ..+..+  .+++++||++|++++..++..||+++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999999977 66 7778888653  344443  5889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      .+++++|+++..|+.++.+... .+.|++||+.
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~N  108 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLAN  108 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence            9999999999999999976543 5688887764

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00876 Ras Ras family

Probab=99.83  E-value=6.5e-20  Score=141.88  Aligned_cols=110  Identities=15%  Similarity=0.281  Sum_probs=97.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      ||+++|++|||||||++++.++.+. .+.++.+ +...+.+..++..+.+++||++|++.+..++..+++++|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            7999999999999999999999887 6666666 6666777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +++++|++++..|+..+.+... ...|+++|+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n  112 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGN  112 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            9999999999999999988765 5788887764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04154 Arl2 Arl2 subfamily

Probab=99.83  E-value=4.4e-20  Score=146.29  Aligned_cols=110  Identities=22%  Similarity=0.291  Sum_probs=92.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++.+..+.+|.|..+  ..+.++  .+.+++||++|++.+..++..+++++|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            346899999999999999999999886667777888544  345555  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa  211 (215)
                      |||.+++++|+++..|+.++.+. ...++|++||+
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~  122 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILA  122 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence            99999999999999999888543 23568877765

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.82  E-value=8.9e-20  Score=141.96  Aligned_cols=108  Identities=17%  Similarity=0.270  Sum_probs=91.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      ||+++|++|||||||+++|.++++..+.+|.+.++.  .+.. +..+.+.+||++|++++..++..+++++|++++|||.
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999999998866788886653  3444 3468999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ++..+|+.+..|+.++.+.. ..+.|++||+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n  109 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLAN  109 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEE
Confidence            99999999999998886543 25788887763

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.82  E-value=1.6e-19  Score=143.56  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=96.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++||++|+++|..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            69999999999999999999999988 5667766554 466777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |+++.++|+.+..|+..+.+.. ..+.|+|+|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  113 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG  113 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999999998887754 3567877766

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04157 Arl6 Arl6 subfamily

Probab=99.82  E-value=1.2e-19  Score=141.21  Aligned_cols=106  Identities=18%  Similarity=0.249  Sum_probs=88.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      +|+++|++|||||||+++|.++.+ . .+.+|+|..+.  .+.  ...+++++||++|++++..++..+++++|++++||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999999864 4 56678886543  222  34688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC---CCCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa  211 (215)
                      |.+++.+|+.+..|+.++.+..   ..++|++||+
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  111 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFA  111 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEE
Confidence            9999999999999999886532   2568877765

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.81  E-value=1.5e-19  Score=143.65  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=91.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .+||+++|++|||||||++++.++++..+.+|.+.++.  .+.++  .+++.+||++|++++...+..+++++|++++||
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999999999877788887754  33333  588999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |.+++++|..+..|+.++.+... .+.|+++++
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~  123 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLA  123 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEE
Confidence            99999999999888887755432 467866664

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.80  E-value=2.4e-19  Score=139.86  Aligned_cols=107  Identities=21%  Similarity=0.269  Sum_probs=88.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      ||+++|+++||||||++++..+.+..+.+|++.++.  .+.  +..+++++|||+|++.+..++..+++++|++++|||.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            799999999999999999998888877778887654  233  3457899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHh-HCCCCceEEEEee
Q 028037          182 TSRCTLNSIVGWYSEARK-WNQVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa~  212 (215)
                      +++.+|.....|+..+.+ ....+.|++||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n  108 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFAN  108 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence            999999988776665533 3334688777753

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.80  E-value=7e-19  Score=136.76  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=91.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      ||+++|++|||||||+++++++++..+.++.+.++.  .+.++  .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            799999999999999999999987677778886654  34443  57899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +++++|..+..|+..+.+.. ..+.|+++|+-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n  108 (158)
T cd00878          77 SDRERIEEAKEELHKLLNEEELKGVPLLIFAN  108 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence            99999999999998886643 35788887653

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.78  E-value=1.5e-18  Score=139.38  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=91.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|.+|||||||++++.++.+..+.+|.+....  .+.++  .+++.+||++|++.+..++..|+.++|++++|
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v   91 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL   91 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            358999999999999999999999888766667665433  34444  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|.+++++|+....|+.++.+.. ..+.|+++|+.
T Consensus        92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~N  126 (184)
T smart00178       92 VDAYDKERFAESKRELDALLSDEELATVPFLILGN  126 (184)
T ss_pred             EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence            99999999999999988876532 25678777764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.3e-18  Score=138.12  Aligned_cols=114  Identities=22%  Similarity=0.328  Sum_probs=105.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+|++++||.|.|||++++|...++|. .+.+|+|.+........+...+++..|||+|||.+..+..-||-++.+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            45899999999999999999999999999 78889999988766666666799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++||++++-++.++..|..++.+.+ .++||++++.
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGN  122 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGN  122 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeecc
Confidence            9999999999999999999999988 5699999863

>cd00879 Sar1 Sar1 subfamily

Probab=99.77  E-value=2.7e-18  Score=137.77  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=92.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||++++.++++..+.+|.+...  ..+.+++  +.+.+||++|++++..++..+++++|++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            47899999999999999999999988877777777654  3455554  6789999999999988889999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ||+++.++|+....|+.++.+... .+.|+++|+.
T Consensus        94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~N  128 (190)
T cd00879          94 VDAADPERFQESKEELDSLLSDEELANVPFLILGN  128 (190)
T ss_pred             EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEe
Confidence            999999999999999988876432 5688777653

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.77  E-value=3.2e-18  Score=131.51  Aligned_cols=106  Identities=21%  Similarity=0.352  Sum_probs=90.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      .|+++|++|||||||++++.+++|. ++.++.+.++.  .+..++  +.+.+||++|++++..++..+++++|++++|||
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3789999999999999999999999 78888887765  334433  789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037          181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH  211 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa  211 (215)
                      .++.++|..+..|+.++.+. ...++|+++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  108 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLG  108 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEE
Confidence            99999999998888887543 22567877664

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.77  E-value=3.7e-18  Score=133.70  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=86.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f------~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      +|+++|++|||||||++++.+...      . .+.+|.+.++.  .+.++  ...+.+||++|++.+..++..+++++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999975322      2 44567777664  34444  5789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      +++|||.++.++++.+..|+.++.+.. ..++|++||+
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  114 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILA  114 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence            999999999999999999998886643 3568877765

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.75  E-value=7.7e-18  Score=134.52  Aligned_cols=111  Identities=21%  Similarity=0.256  Sum_probs=95.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|..|+|||||++++..+++....||.|.+..  .+..++  +.+++||.+|++.++.+|+.||.++|++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence            4589999999999999999999998887788889997754  455554  678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |.|.+|.+.+++....+.++.... -.++|++|++.
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~N  123 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILAN  123 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEE
T ss_pred             EEecccceeecccccchhhhcchhhcccceEEEEec
Confidence            999999999999998888876543 25789887763

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.74  E-value=3.8e-17  Score=124.49  Aligned_cols=112  Identities=16%  Similarity=0.242  Sum_probs=98.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|.+|+|||||++++..+.+. ++.++++.++....+..++..+.+.+||++|++++..++..+++++++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            379999999999999999999999977 7777888888877788888779999999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSR-CTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~-~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|+... .++.+.. .|...+.+....+.|+++|.
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~  115 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVG  115 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEE
Confidence            999998 8888876 89888887765478877664

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1.2e-17  Score=132.14  Aligned_cols=112  Identities=20%  Similarity=0.276  Sum_probs=98.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+.+|+++|-.++||||+++++..+++..+.||+|.+..  .+.+.  ++.+++||.+||++++.+|..||++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence            345689999999999999999999999999988999998765  44444  68999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |+|.|.+|++-+.++++-+..+-...+ .++|+++.|
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~a  125 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFA  125 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEe
Confidence            999999999999999987777766554 679988887

>PTZ00099 rab6; Provisional

Probab=99.72  E-value=4.5e-17  Score=130.45  Aligned_cols=91  Identities=16%  Similarity=0.349  Sum_probs=82.4

Q ss_pred             cCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhH
Q 028037          122 GNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW  200 (215)
Q Consensus       122 ~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~  200 (215)
                      .+.|. ++.+|+|.++..+.+.+++..+++.||||+|+++|..++..||+++|++|+|||+++++||+++..|+.++.+.
T Consensus         2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            35677 77889999999999999999999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCceEEEEee
Q 028037          201 NQVTKQSLFFHI  212 (215)
Q Consensus       201 ~~~~~piIlVa~  212 (215)
                      ...++|++||+.
T Consensus        82 ~~~~~piilVgN   93 (176)
T PTZ00099         82 RGKDVIIALVGN   93 (176)
T ss_pred             cCCCCeEEEEEE
Confidence            656788777753

>cd04155 Arl3 Arl3 subfamily

Probab=99.71  E-value=8.2e-17  Score=126.89  Aligned_cols=109  Identities=17%  Similarity=0.267  Sum_probs=90.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||++++.+..+..+.++.|.++.  .+..++  ..+.+||++|++++...+..+++++|++++|
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v   88 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV   88 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence            378999999999999999999999887766677776543  445554  6789999999999888888899999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ||.++..+|.....|+..+.+.. ..++|+++++
T Consensus        89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  122 (173)
T cd04155          89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFA  122 (173)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence            99999999999988887775432 3568887764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.70  E-value=1.3e-16  Score=130.52  Aligned_cols=110  Identities=19%  Similarity=0.227  Sum_probs=86.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC-cEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a-~~iilvfd  180 (215)
                      +|+++|++|||||||+++|.++++....+++..++........+....+.+||++|++++......+++++ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999999886555554444332222224567899999999999998888899999 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhH---CCCCceEEEEe
Q 028037          181 LTSR-CTLNSIVGWYSEARKW---NQVTKQSLFFH  211 (215)
Q Consensus       181 it~~-~Sf~~i~~wl~~i~~~---~~~~~piIlVa  211 (215)
                      .++. +++..+..|+.++...   ...++|++|++
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~  116 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIAC  116 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence            9998 7888888777665432   22578877765

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01890 LepA LepA subfamily

Probab=99.69  E-value=1.5e-16  Score=126.02  Aligned_cols=106  Identities=13%  Similarity=0.218  Sum_probs=81.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-------CC-Cccc------cceeeeEEEEEEE-----CCeEEEEEEEecCCCCCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~-------f~-~~~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~~  162 (215)
                      +|+++|+.+||||||+++|++..       +. .+.+      +.|.++....+.+     ++..+.+++|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       22 2222      2345555444433     6778999999999999999


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+...+++++|++|+|||.++..+++....|.....    .++|+++|.
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~----~~~~iiiv~  126 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE----NNLEIIPVI  126 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH----cCCCEEEEE
Confidence            999999999999999999999888888877764332    346666554

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.69  E-value=2.9e-16  Score=122.05  Aligned_cols=110  Identities=20%  Similarity=0.276  Sum_probs=91.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+++|+++|..++|||+++++|.+..-....||.|.+..  ++.++  .++++|||.+||...+..|+.||..+||+|.|
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik--tl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIwv   90 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK--TLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV   90 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE--EEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence            389999999999999999999998876677788887654  44444  58899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +|.+|+..|++...-++++..... ...|++|+|.
T Consensus        91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlan  125 (185)
T KOG0073|consen   91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLAN  125 (185)
T ss_pred             EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEe
Confidence            999999999999877777644221 3456666653

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.65  E-value=2.2e-15  Score=116.16  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=93.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCC-CccchhhccCCcE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVA  174 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~-~~~~~~~~~~a~~  174 (215)
                      ..||+++|-.+||||+++.++..++..   ++.+|+ .|+|.-.+.. +|..-.+.++||+|-..+ ..+-..|+.-+|+
T Consensus         9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTi-EDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTI-EDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             ceEEEEECCccccHHHHHHHHHhccCCCCCccccch-hhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            579999999999999999999988765   444555 4666565555 467788999999998877 6677889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeec
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHII  213 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~~  213 (215)
                      |++|||..|++||+.+.....+|.++.+ ..+||+++|.+
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~  127 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANK  127 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEech
Confidence            9999999999999999877777777654 56999998865

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.64  E-value=6.5e-16  Score=124.91  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCCC-Cc------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG--NEQE-RS------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  165 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~--~~f~-~~------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~  165 (215)
                      -+|+++|+++||||||+++|+.  +.|. .+            ..+.|.++..+...+++..+.+++|||+|+++|....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999997  6665 22            1245666666666666677899999999999999999


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+++++|++++|||.++. .+.....|+..+..   .++|+++|.
T Consensus        83 ~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~---~~~p~iiv~  124 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVI  124 (194)
T ss_pred             HHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH---cCCCEEEEE
Confidence            9999999999999999884 34444555555543   245555443

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.2e-15  Score=116.04  Aligned_cols=110  Identities=18%  Similarity=0.259  Sum_probs=93.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++++|+++|-.++||||++++++-++.....||+|+++.  ++.+  ++++|++||.+||++.+.+|..||.+..++|||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            478999999999999999999999988888999998754  4444  468899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      .|..+++..++++.-+..+... .-.+.|+++.|.
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlAN  126 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILAN  126 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEec
Confidence            9999998888887544444332 235788888774

>cd01898 Obg Obg subfamily

Probab=99.64  E-value=2.3e-15  Score=118.03  Aligned_cols=109  Identities=14%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhcc---CCc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DAV  173 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~~---~a~  173 (215)
                      .|+++|.+|||||||++++.+.+.. ...+....+.....+.+++ ...+.+|||+|+.+    +..+...+++   .+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            5899999999999999999976543 2211111111111233333 25799999999742    3334455544   599


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      ++++|||.++. ++++++..|++++.....  .+.|+++|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  121 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL  121 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence            99999999999 899999999999987653  356655554

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.64  E-value=3e-18  Score=135.69  Aligned_cols=114  Identities=20%  Similarity=0.360  Sum_probs=102.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..+|++++|+-|||||+++++|+...|. .|..|+|.++..+.+..+. ..+++++||.+||++|..+..-||+.+++..
T Consensus        24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~  103 (229)
T KOG4423|consen   24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF  103 (229)
T ss_pred             hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence            3699999999999999999999999999 8888999999888887764 5589999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~  212 (215)
                      +|||+++..+|+.+..|.+++....    +..+|+|+.|.
T Consensus       104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllan  143 (229)
T KOG4423|consen  104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLAN  143 (229)
T ss_pred             EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccc
Confidence            9999999999999999999996543    34577777664

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.61  E-value=8.4e-15  Score=114.70  Aligned_cols=108  Identities=17%  Similarity=0.238  Sum_probs=72.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc---------chhhccC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIACKD  171 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~---------~~~~~~~  171 (215)
                      +|+++|++|||||||+++|.++.+. ...+....+.....+  +...+.+++|||+|+......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999999998875 322211111211122  223578999999998532110         0011123


Q ss_pred             CcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEee
Q 028037          172 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       172 a~~iilvfdit~~~Sf--~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|++++|||.+++++|  +....|++++++.. .+.|+++|+-
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~N  121 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLN  121 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEE
Confidence            6899999999998764  66678999987654 4678777653

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=99.61  E-value=3.6e-15  Score=121.18  Aligned_cols=111  Identities=14%  Similarity=0.120  Sum_probs=79.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--cch------hhcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--~~~------~~~~  170 (215)
                      .++|+++|++|||||||++++.++++. ...+....+.....+.+++. ..+.+|||+|..+...  +..      ..+.
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~  119 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA  119 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999998754 32222222333344455443 3789999999743211  111      1256


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|++++|+|.+++.+++.+..|.+.+......+.|+++|.
T Consensus       120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~  160 (204)
T cd01878         120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVL  160 (204)
T ss_pred             cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEE
Confidence            89999999999999999999889888877665567766654

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.61  E-value=5.3e-15  Score=114.84  Aligned_cols=89  Identities=15%  Similarity=0.136  Sum_probs=64.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC---CCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      .|+++|+++||||||+++|.+.   .+. ++.+++..+.....+.+++ ...+++|||+|+++|......++.++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            5899999999999999999963   343 2233333333333444442 4589999999999987766677889999999


Q ss_pred             EEeCCC---hhhHHHHH
Q 028037          178 MFDLTS---RCTLNSIV  191 (215)
Q Consensus       178 vfdit~---~~Sf~~i~  191 (215)
                      |||.++   .++++.+.
T Consensus        81 V~d~~~~~~~~~~~~~~   97 (164)
T cd04171          81 VVAADEGIMPQTREHLE   97 (164)
T ss_pred             EEECCCCccHhHHHHHH
Confidence            999987   55555443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.60  E-value=7.5e-16  Score=117.82  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC-----CCCccchhhccCCcEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAI  175 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e-----~~~~~~~~~~~~a~~i  175 (215)
                      +||+++|++|||||||+++|.++.+. +.+|.+.++.       +     .+|||+|+.     .|..+.. .++++|++
T Consensus         1 ~kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         1 KRIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             CeEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            38999999999999999999988763 3345444432       1     689999983     2333333 47899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHH
Q 028037          176 LFMFDLTSRCTLNSIVGWYSE  196 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~  196 (215)
                      ++|||++++.||.. ..|.+.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~   86 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASI   86 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHh
Confidence            99999999999876 355543

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.59  E-value=1.5e-14  Score=108.56  Aligned_cols=106  Identities=22%  Similarity=0.420  Sum_probs=86.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC
Q 028037          105 LLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT  182 (215)
Q Consensus       105 llGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit  182 (215)
                      ++|.+|+|||||++++.+... . ...++. .++........+....+.+||++|+..+......+++.+|++++|||.+
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999999887 4 444454 7877777777778899999999999988888788899999999999999


Q ss_pred             ChhhHHHHHHHHH-HHHhHCCCCceEEEEe
Q 028037          183 SRCTLNSIVGWYS-EARKWNQVTKQSLFFH  211 (215)
Q Consensus       183 ~~~Sf~~i~~wl~-~i~~~~~~~~piIlVa  211 (215)
                      +..+++....|.. ........+.|+++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~  109 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVG  109 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence            9999999998832 2333334567766664

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.59  E-value=1.5e-14  Score=110.27  Aligned_cols=111  Identities=20%  Similarity=0.310  Sum_probs=93.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||.++|-.++|||||++++.......-.+|.|++.  +.+..+| .+.+++||.+||...+..|..||.+.|++|+
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            458999999999999999999999777667788999774  4555554 5899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |.|.+|+.-|+++..-+-++..... ..+|+++.|
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfa  126 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFA  126 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehh
Confidence            9999999999999876666654332 568887765

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.57  E-value=1.7e-14  Score=112.67  Aligned_cols=83  Identities=8%  Similarity=0.026  Sum_probs=65.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .|+++|++|+|||||+++|.++++. .+.++...++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            4899999999999999999999887 333333323322333333 24678999999999999888888899999999999


Q ss_pred             eCCCh
Q 028037          180 DLTSR  184 (215)
Q Consensus       180 dit~~  184 (215)
                      |.++.
T Consensus        82 d~~~~   86 (168)
T cd01887          82 AADDG   86 (168)
T ss_pred             ECCCC
Confidence            99984

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.57  E-value=2.9e-14  Score=129.27  Aligned_cols=106  Identities=15%  Similarity=0.271  Sum_probs=82.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~  168 (215)
                      ..+||+++|++|||||||++++++..+  ....+.+..++....+.+++.  .+.+|||+|+.++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            358999999999999999999998764  345566667777777888764  4689999999776542        2457


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|++++|||.+++.+++..  |+.++..   .+.|+++|.
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~  317 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVL  317 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEE
Confidence            8999999999999999998876  8777653   356765553

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.55  E-value=2.8e-14  Score=125.91  Aligned_cols=111  Identities=15%  Similarity=0.131  Sum_probs=80.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccch------hhcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVP------IACK  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~------~~~~  170 (215)
                      .++|+++|.++||||||++++.+.++. ...+....++....+.+++ ...+.+|||+|..+  ...+..      .++.
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~  267 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATLEEVR  267 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHHHHHH
Confidence            389999999999999999999998764 3333222455566777743 24789999999732  111111      2478


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|++++|||.+++.+++.+..|.+.+......+.|+++|.
T Consensus       268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~  308 (351)
T TIGR03156       268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVY  308 (351)
T ss_pred             hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            99999999999999999998888777776654567755554

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.52  E-value=1.2e-13  Score=106.70  Aligned_cols=99  Identities=14%  Similarity=0.057  Sum_probs=72.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhcc--CCcEE
Q 028037          105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI  175 (215)
Q Consensus       105 llGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~~--~a~~i  175 (215)
                      ++|++|||||||++++.+..+. .+.+++..+.....+.+++  ..+.+|||+|++.+...      ...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999988755 5556556666666677765  47899999999887653      556664  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|+|.++.++.   ..|..++.+.   ++|+++|.
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~~---~~~~iiv~  108 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLEL---GLPVVVAL  108 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHHc---CCCEEEEE
Confidence            999999986543   3455555442   46655553

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.51  E-value=8.4e-15  Score=118.64  Aligned_cols=86  Identities=16%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC-----------CCCCCccch
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP  166 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G-----------~e~~~~~~~  166 (215)
                      ..+||+++|.+|||||||++++.++.+. .+.+++  ++....+.++    .+.+|||+|           ++++..++.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGV--TRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCce--eeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3689999999999999999999998876 444433  3333333333    589999999           456666666


Q ss_pred             hhcc-CCcEEEEEEeCCChhhHHHH
Q 028037          167 IACK-DAVAILFMFDLTSRCTLNSI  190 (215)
Q Consensus       167 ~~~~-~a~~iilvfdit~~~Sf~~i  190 (215)
                      .|+. +++.+.+++++.|..++.++
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~  106 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEI  106 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCcccccc
Confidence            6665 44444333333444444443

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.51  E-value=2.9e-13  Score=103.97  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=75.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhcc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~  170 (215)
                      +||+++|++|+|||||++++.+..+.  ...+++..++....+..++  .++.+|||+|...+...        ...++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999988753  3344444455444555543  57899999998776432        234567


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+|++++|+|++++.+..+.+.|..      ..+.|+++|.
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~  114 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVL  114 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEE
Confidence            9999999999999998888776554      2456666654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.50  E-value=1.4e-13  Score=125.90  Aligned_cols=106  Identities=19%  Similarity=0.276  Sum_probs=76.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--------CCccchhhcc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACK  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~  170 (215)
                      .||+++|.+|||||||+++++++.+.  ...+.+..+.....+..++.  .+.+|||+|++.        +......+++
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            68999999999999999999988754  33444444444455555554  588999999873        2233456788


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .+|++|+|||.++..++.. ..|.+.+++   .+.|++||+.
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~N  154 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAAN  154 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEE
Confidence            9999999999999877653 345555543   3578777653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.49  E-value=1.9e-13  Score=107.34  Aligned_cols=104  Identities=15%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccc---hhhccCCcE
Q 028037          105 LLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHV---PIACKDAVA  174 (215)
Q Consensus       105 llGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~---~~~~~~a~~  174 (215)
                      ++|++|||||||++++.+.++.  ++.. |...+  ...+.+++ ...+.+|||+|..+    ...+.   ..+++++|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPN--LGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCc--ceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            5899999999999999988753  2222 22222  22344441 35689999999743    23332   234678999


Q ss_pred             EEEEEeCCCh------hhHHHHHHHHHHHHhHCC-------CCceEEEEe
Q 028037          175 ILFMFDLTSR------CTLNSIVGWYSEARKWNQ-------VTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~------~Sf~~i~~wl~~i~~~~~-------~~~piIlVa  211 (215)
                      +++|+|.++.      .+++++..|..++.....       .+.|+++|.
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVL  127 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence            9999999998      689999999998876543       367877665

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.47  E-value=1.3e-13  Score=125.36  Aligned_cols=116  Identities=19%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      .....++|+++||.||||||||..+..++|++..|..-..+... ..+....+...|.|++..++-+.....-.+.||++
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi   83 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVI   83 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEE
Confidence            34567999999999999999999999999997666553332211 22334456689999987777666667778999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCC--CCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQ--VTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~--~~~piIlVa~  212 (215)
                      .++|++++++|++.+. .|++.+++..+  .++|||||..
T Consensus        84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGN  123 (625)
T KOG1707|consen   84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGN  123 (625)
T ss_pred             EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEee
Confidence            9999999999999997 89999998764  5799999853

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.47  E-value=3.8e-13  Score=122.28  Aligned_cols=104  Identities=19%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~  169 (215)
                      .+||+++|.++||||||++++.+.+.  ....+.+..++....+.+++  ..+.+|||+|.+++...        ...++
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            48999999999999999999998775  34445445566667777766  45799999999876542        23467


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++|++++|||.+++.++++...|..      ..+.|+++|.
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~  328 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVL  328 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEE
Confidence            89999999999999999887666654      2456755554

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.46  E-value=3.4e-13  Score=126.31  Aligned_cols=107  Identities=12%  Similarity=0.190  Sum_probs=82.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC-------CCC-Cccc------cceeeeEEEEEEE-----CCeEEEEEEEecCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN-------EQE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS  161 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~-------~f~-~~~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~  161 (215)
                      -+++++|..++|||||+.+|+..       .+. .+.+      ..|.++....+.+     ++..+.++||||+|+++|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            47999999999999999999864       232 2222      2366666555544     567799999999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ......+++.+|++|+|||.++..+++....|...+.    .++|+++|.
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiVi  129 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVI  129 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEE
Confidence            9889999999999999999999888888877765543    245655443

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK11058 GTPase HflX; Provisional

Probab=99.46  E-value=5.3e-13  Score=120.49  Aligned_cols=110  Identities=16%  Similarity=0.135  Sum_probs=78.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Cccch------hhccC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVP------IACKD  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~~~------~~~~~  171 (215)
                      .+|+++|.++||||||++++.+.++. ...+....+.....+.+++. -.+.+|||+|..+.  ..++.      ..+++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987764 33333344555556666542 25789999998442  22222      23689


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|++|+|+|.+++.+++++..|.+.+......+.|+++|.
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~  316 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVM  316 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            9999999999999999988766665555444567766654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.46  E-value=3.6e-13  Score=123.19  Aligned_cols=106  Identities=15%  Similarity=0.222  Sum_probs=79.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-h
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P  166 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~-~  166 (215)
                      ..||+++|.++||||||+++|++.++.  ...+++..+.....+.+++..  +.+|||+|..+          |..+. .
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence            589999999999999999999998763  455566667766777777765  57999999632          22222 2


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+++++|++++|||.++..|++++. |+..+..   .+.|+|||+
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~  329 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAF  329 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence            3568999999999999999998874 5555543   356766654

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.45  E-value=7e-14  Score=107.17  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=91.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +..+.++|-..+|||||++....++|. +-.||.|++.+    .+....+.+.+||.+||.+|+.+|..||++.+++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            578999999999999999999999998 67789998854    3446678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      .|..|++.+...+.-+..+.... =..+|+++..
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLG  129 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLG  129 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEec
Confidence            99999999888876665554433 3678887764

>PRK15494 era GTPase Era; Provisional

Probab=99.45  E-value=7.6e-13  Score=116.31  Aligned_cols=110  Identities=13%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccch-------h
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I  167 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~-------~  167 (215)
                      ...+||+++|++|||||||+++|++..+....+  .+..+.....+..++  .++.+|||+|+.+ +..+..       .
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            456899999999999999999999888752111  111233334555555  4679999999854 333322       2


Q ss_pred             hccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeec
Q 028037          168 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       168 ~~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ++.++|++++|+|.++  +|+++. .|++.++...  ..++++++|+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~~--~p~IlViNKi  170 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSLN--IVPIFLLNKI  170 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhcC--CCEEEEEEhh
Confidence            3679999999999654  677775 4666665432  3456666663

>cd04167 Snu114p Snu114p subfamily

Probab=99.42  E-value=1.1e-12  Score=107.84  Aligned_cols=107  Identities=18%  Similarity=0.258  Sum_probs=75.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc------------------cccceeeeEEEEEEE-----CCeEEEEEEEecCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERS------------------LQMAGLNLINKTLMV-----QGARIAFSIWDVGGD  158 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~------------------~~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~  158 (215)
                      +|+++|..++|||||+.+++...+...                  ....|..+....+.+     ++..+.+++|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987544311                  012233333332222     356789999999999


Q ss_pred             CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      ++|......++..+|++++|+|.++..+++. ..|+..+...   +.|+++ ++|
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~---~~p~iiviNK  132 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE---GLPIVLVINK  132 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCEEEEEEC
Confidence            9998888888999999999999998877654 4555555432   356544 444

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.42  E-value=1.2e-12  Score=118.38  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=74.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccchhhcc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~~~~~  170 (215)
                      .||+++|.+|||||||++++.+.+..  ...+.+..+.....+.+++  ..+.+|||+|++..        ......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999988753  3344444455555666666  77999999999872        222345678


Q ss_pred             CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~--~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|++|+|+|.++..+..  .+..|+.+.      +.|+++|+
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~  116 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVV  116 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEE
Confidence            999999999999864443  334555432      56776664

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.42  E-value=1.4e-12  Score=114.40  Aligned_cols=110  Identities=14%  Similarity=0.147  Sum_probs=78.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhh---ccCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDA  172 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~---~~~a  172 (215)
                      ..|.|+|.++||||||++++...+.. ..++.+..+...-.+.++ ...++.+||++|..+    ...+...|   +..+
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            47899999999999999999976544 333322222222334442 234689999999743    22344444   4579


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      +++++|+|+++.+++++++.|.+++..+.+  .+.|++||+
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~  278 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVL  278 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEE
Confidence            999999999999899999999999988764  357766665

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.41  E-value=2.3e-12  Score=112.78  Aligned_cols=110  Identities=15%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhcc---CC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DA  172 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~~---~a  172 (215)
                      ..|.++|.++||||||++++...+.. ..++.+..+...-.+.+++ ..++.|||++|..+    ...+...|++   .+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            58999999999999999999987643 3222111222223344443 36789999999853    2245555544   69


Q ss_pred             cEEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          173 VAILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       173 ~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      +++++|+|+++.   ++++++..|.+++..+..  .+.|++||+
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~  280 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVL  280 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEE
Confidence            999999999987   789999999999988753  357766665

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01894 EngA1 EngA1 subfamily

Probab=99.40  E-value=1.9e-12  Score=99.50  Aligned_cols=102  Identities=20%  Similarity=0.217  Sum_probs=68.2

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cchhhccCCc
Q 028037          104 SLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV  173 (215)
Q Consensus       104 vllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~~~~a~  173 (215)
                      +++|.+|||||||++++.+...  ....+.+..+........++  ..+.+|||+|.+.+..        ....+++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            4799999999999999998753  23333333344444444444  6789999999988654        2345678999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|+|..+..+.... ...+.+++.   +.|+++|.
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~  112 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVV  112 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEE
Confidence            99999999886655443 222333332   36766654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.40  E-value=1.7e-12  Score=103.59  Aligned_cols=106  Identities=13%  Similarity=0.158  Sum_probs=69.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~~  166 (215)
                      ....+|+++|++|+|||||++++.+..+. .+.++.|.......+..++   .+.+|||+|...          +..+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            44689999999999999999999998754 4444444433322333332   589999999532          223334


Q ss_pred             hhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       167 ~~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      .|++.   ++++++|+|.+++-+..+.. ++..+..   .+.|+++|
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~---~~~pviiv  135 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE---RGIPVLIV  135 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH---cCCCEEEE
Confidence            45553   57999999999876655553 3334433   24666554

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.37  E-value=8.7e-12  Score=97.01  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=70.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----------c-ch
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------H-VP  166 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~----------~-~~  166 (215)
                      .++|+++|++|+|||||++++.+..+.  ...+....+.....+..++.  .+.+|||+|..+...          . ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            478999999999999999999987643  33333333443344555554  478999999764311          1 12


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .++.++|++++|+|.+++.++.... ++..+..   .+.|+++|.
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~  120 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVV  120 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEE
Confidence            3467899999999999998876643 3333332   235655443

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.37  E-value=3e-12  Score=101.54  Aligned_cols=106  Identities=10%  Similarity=0.070  Sum_probs=73.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-cc--------------ceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QM--------------AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  166 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~-~t--------------~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~  166 (215)
                      +|+++|+.|+|||||++.+.+..+.... ..              .+.........++.....+.+|||+|+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999999988776222 11              11111111222222356899999999999888888


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+++.+|++++|+|.++..+.+. ..++..+.+   .+.|+++|.
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~  121 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAI  121 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEE
Confidence            89999999999999998765543 345555544   346655553

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01850 CDC_Septin CDC/Septin

Probab=99.37  E-value=4.2e-12  Score=108.66  Aligned_cols=61  Identities=13%  Similarity=0.303  Sum_probs=50.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----------ccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ..++|+++|++|+|||||++++++..+. .          ..+|++.+.....+..+|..+++.+|||+|-.
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfg   74 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFG   74 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcc
Confidence            3689999999999999999999998876 2          23455666666777778888999999999943

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.36  E-value=4e-12  Score=94.33  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=66.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~-~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +|++++|+.|||||+|+.+|.++.|. .+. ++.+                           +......+++.++++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            59999999999999999999888886 333 3333                           334456678899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||.++++||+++  |.+.+....+.+.|+++++
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~   84 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGG   84 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEe
Confidence            999999999887  9988877666678877765

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=5.1e-13  Score=105.01  Aligned_cols=110  Identities=20%  Similarity=0.232  Sum_probs=89.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC------CCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN------EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC  169 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~------~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~  169 (215)
                      ...+.++++|..++|||+|+.+....      ...  .-.+|+|.+..  ++.++  ...+.+||.+||+..+.+|..||
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence            44688999999999999999987643      221  34568888866  44454  46789999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ..++++|+++|.+|++-|+..+.-++.+..+. ..++|+++.|
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~la  133 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLA  133 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhc
Confidence            99999999999999999999987777775544 3789987765

>cd01889 SelB_euk SelB subfamily

Probab=99.36  E-value=3.7e-12  Score=102.72  Aligned_cols=93  Identities=13%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC----CCC-Cc-----cccceeeeEEEEEE----------ECCeEEEEEEEecCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN----EQE-RS-----LQMAGLNLINKTLM----------VQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~----~f~-~~-----~~t~g~~~~~~~v~----------~~~~~~~l~i~Dt~G~e~  160 (215)
                      ++|+++|+.++|||||+++|++.    .+. ..     ..|.+..+....+.          .++....+++|||+|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            48999999999999999999972    222 11     12444444433333          123468899999999865


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHH
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW  193 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~w  193 (215)
                      +..........+|++++|+|.++..+.+....|
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~  113 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECL  113 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHH
Confidence            432222234567999999999986555444433

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00436 era GTP-binding protein Era

Probab=99.34  E-value=8.2e-12  Score=106.32  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-c-------chhhcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-H-------VPIACK  170 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~-------~~~~~~  170 (215)
                      +|+++|.+|||||||++++++..+.   ....|+....  ..+...+ ..++.+|||+|..+... +       ...++.
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i--~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRI--SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcE--EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            6899999999999999999998764   2222443222  2233322 35689999999865321 1       234578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|++++|+|.++..+++  ..+++.+..   .+.|+++|.
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~  114 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTR  114 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEE
Confidence            999999999999988775  445555544   346755553

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.33  E-value=1e-11  Score=116.08  Aligned_cols=86  Identities=9%  Similarity=0.044  Sum_probs=68.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ....+|+++|..++|||||+++|.+.++. .+.+.+..++....+..++. ..+.+|||+|++.|..++..++..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            34578999999999999999999998887 44333333444445555432 27899999999999999988999999999


Q ss_pred             EEEeCCCh
Q 028037          177 FMFDLTSR  184 (215)
Q Consensus       177 lvfdit~~  184 (215)
                      +|||.++.
T Consensus       164 LVVda~dg  171 (587)
T TIGR00487       164 LVVAADDG  171 (587)
T ss_pred             EEEECCCC
Confidence            99999873

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.33  E-value=1.8e-11  Score=110.36  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc-----------
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-----------  165 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~-----------  165 (215)
                      ..+||+++|.++||||||++++++.+..  ...+.+..+.....+..++.  .+.+|||+|..++....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            4589999999999999999999987643  33343334444445555554  68899999987654332           


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      ..+++.+|++++|+|.++..+.+... ++..+.+   .+.|+|+|
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv  289 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIV  289 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEE
Confidence            23578999999999999988877754 4444433   24565554

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.32  E-value=7.8e-12  Score=100.40  Aligned_cols=87  Identities=13%  Similarity=0.168  Sum_probs=60.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCC----------CCCccchh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e----------~~~~~~~~  167 (215)
                      ...||+++|++|||||||+++++++++. .+.++.|..........   ..++.||||+|..          ++..+...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            4689999999999999999999998765 55555554332222222   3679999999953          23334455


Q ss_pred             hccCC---cEEEEEEeCCChhhHH
Q 028037          168 ACKDA---VAILFMFDLTSRCTLN  188 (215)
Q Consensus       168 ~~~~a---~~iilvfdit~~~Sf~  188 (215)
                      |++.+   +++++++|.+++.+..
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~  123 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKEL  123 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHH
Confidence            55544   6788889988765543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.32  E-value=1.7e-11  Score=102.20  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCc-----cchhhccCCcEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFD-----HVPIACKDAVAI  175 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~-----~~~~~~~~a~~i  175 (215)
                      ||+++|..++||||+.+-...+-.+......|.......-.+ ....+.+++||++||..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            899999999999999998887655422223333332223333 23457899999999987644     346678999999


Q ss_pred             EEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeec
Q 028037          176 LFMFDLTSRCTLNSI---VGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       176 ilvfdit~~~Sf~~i---~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      |+|||+.+.+-.+.+   ...++.+.++.+.-.--++++|+
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~  121 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKM  121 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-C
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeec
Confidence            999999965543343   46666777777655667888875

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.31  E-value=7.6e-12  Score=104.79  Aligned_cols=107  Identities=11%  Similarity=0.145  Sum_probs=76.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--------------CCcc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ--------------ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f--------------~~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      +|.++|..|+|||||+++++...-              .++.   ...|..+......++....++++|||+|+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            488999999999999999975310              0111   12244444444555555688999999999999888


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      ...+++.+|++++|+|.++..+. ....|++.+++.   ++|+++ ++|
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK  125 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNK  125 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEEC
Confidence            88899999999999999987553 345666666553   456444 444

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04163 Era Era subfamily

Probab=99.31  E-value=2.3e-11  Score=93.64  Aligned_cols=84  Identities=19%  Similarity=0.189  Sum_probs=58.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-C-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cchhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~~~  168 (215)
                      ...+|+++|.+|+|||||++++.+.++. . ..+.......  ..........+.+|||+|......        .....
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~   79 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSA   79 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence            3679999999999999999999987654 1 1111111111  111233357899999999875433        22345


Q ss_pred             ccCCcEEEEEEeCCCh
Q 028037          169 CKDAVAILFMFDLTSR  184 (215)
Q Consensus       169 ~~~a~~iilvfdit~~  184 (215)
                      +..+|++++|+|.++.
T Consensus        80 ~~~~d~i~~v~d~~~~   95 (168)
T cd04163          80 LKDVDLVLFVVDASEP   95 (168)
T ss_pred             HHhCCEEEEEEECCCc
Confidence            7889999999999987

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.29  E-value=3.5e-11  Score=108.48  Aligned_cols=108  Identities=12%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---c
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---K  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~  170 (215)
                      ..|.++|.++||||||++++.+.+.. ..++  |...++.  .+.++ ....+.+||++|..+    ...+...|+   .
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG--~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhie  235 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLG--VVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIE  235 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEE--EEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHh
Confidence            48999999999999999999987644 3233  2232322  33333 135689999999743    333555554   4


Q ss_pred             CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          171 DAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      .++++++|+|+++.   ++++++..|.+++..+..  .+.|++||+
T Consensus       236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~  281 (424)
T PRK12297        236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVA  281 (424)
T ss_pred             hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEE
Confidence            58999999999865   789999999999988764  367766665

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.29  E-value=1.8e-11  Score=110.33  Aligned_cols=102  Identities=21%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC--------CCccchhhccC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD  171 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--------~~~~~~~~~~~  171 (215)
                      ||+++|.+|||||||++++.+....  ...+.+..+.....+..++.  .+.+|||+|.+.        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            6899999999999999999987753  33343334444455555554  599999999743        33345567789


Q ss_pred             CcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037          172 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|++++|+|.++..+...  +..|+.   +   .+.|+++|+
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVv  114 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVA  114 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEE
Confidence            999999999988654433  334443   3   246666654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.28  E-value=5.4e-11  Score=99.35  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=70.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC----c---cchhhccCCc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV  173 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----~---~~~~~~~~a~  173 (215)
                      +|+++|.+|+|||||++++.+.... ..++....+.....+.+++  ..+++||++|+.+..    .   ....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            7899999999999999999987643 3333222233334455554  578999999986533    1   2235689999


Q ss_pred             EEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          174 AILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       174 ~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      ++++|+|.++++ ..+.+.+.+++..-..+...|.+.+
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~  117 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITI  117 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEE
Confidence            999999999865 4555555555442222333454443

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.27  E-value=1.9e-11  Score=114.32  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----cccceeeeEEEEEE------------ECCeEEEEEEEecCCCCCCCc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS----LQMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFD  163 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~----~~t~g~~~~~~~v~------------~~~~~~~l~i~Dt~G~e~~~~  163 (215)
                      --|+++|..++|||||++++.+..+. ..    .+++|..+......            ++.....+.+|||+|++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            35899999999999999999988776 21    22345443322110            000112388999999999999


Q ss_pred             cchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          164 HVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       164 ~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++..+++.+|++++|||.++   +++++.+..+    +.   .++|+++++
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~---~~vpiIVv~  128 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YKTPFVVAA  128 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH---cCCCEEEEE
Confidence            99999999999999999997   6777766533    21   256766654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.27  E-value=4e-11  Score=115.06  Aligned_cols=106  Identities=10%  Similarity=0.053  Sum_probs=76.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ..+...|+++|..++|||||+++|..+.+. .+...+..+.....+.+++  ..++||||+|++.|..++..++..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            345678999999999999999999988776 3333332333333455554  5689999999999999999889999999


Q ss_pred             EEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||||.++   +++++.+.    .+.   ..++|+||+.
T Consensus       365 ILVVdAddGv~~qT~e~i~----~a~---~~~vPiIVvi  396 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAIN----HAK---AAGVPIIVAI  396 (787)
T ss_pred             EEEEECCCCCCHhHHHHHH----HHH---hcCCcEEEEE
Confidence            99999998   45544432    122   2457765554

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.26  E-value=3.3e-11  Score=112.79  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=70.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc---CCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~---~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +.|+++|..++|||||+++|.+   +.+. ++..++..++....+..++  ..+.+||++|+++|......++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            3589999999999999999996   3444 4444555565555566655  78999999999999877778889999999


Q ss_pred             EEEeCCC---hhhHHHHH
Q 028037          177 FMFDLTS---RCTLNSIV  191 (215)
Q Consensus       177 lvfdit~---~~Sf~~i~  191 (215)
                      +|+|.++   +++++.+.
T Consensus        79 LVVDa~~G~~~qT~ehl~   96 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA   96 (581)
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            9999998   66766653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.26  E-value=2.3e-11  Score=115.86  Aligned_cols=106  Identities=9%  Similarity=0.073  Sum_probs=77.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ...+|+++|..++|||||++++....+. ....  |.....+...+..++....+.+|||+|++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            4579999999999999999999988776 3322  222223333344445678999999999999999999999999999


Q ss_pred             EEEEeCCCh---hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSR---CTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~---~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |+|+|.++.   ++++.+..    +.   ..++|+|++.
T Consensus       323 ILVVDA~dGv~~QT~E~I~~----~k---~~~iPiIVVi  354 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAINY----IQ---AANVPIIVAI  354 (742)
T ss_pred             EEEEECcCCCChhhHHHHHH----HH---hcCceEEEEE
Confidence            999999884   55544432    22   2457866654

>PRK10218 GTP-binding protein; Provisional

Probab=99.26  E-value=4.7e-11  Score=111.96  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=83.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~--~~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      -.||+++|..++|||||+.+|+.  +.|...             ..+.|.++..+...++...+++++|||+|+.+|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            36899999999999999999996  444321             224577777777777777899999999999999999


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      +..+++.+|++|+|+|.++....+ .+.++..+...   ++| +++++|+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~---gip~IVviNKi  130 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAY---GLKPIVVINKV  130 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHc---CCCEEEEEECc
Confidence            999999999999999998864333 33444444433   344 5666654

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.26  E-value=4.2e-11  Score=114.58  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=71.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccchhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~~~  168 (215)
                      ...+|+++|.++||||||++++++..+.  ...+.+..+........++  ..+.+|||+|.+..        ......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3578999999999999999999987654  3334333343333333444  46889999998742        2233456


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +..+|++|+|+|.++.  +.... .|.+.+++   .+.|+|+|+
T Consensus       352 ~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~  390 (712)
T PRK09518        352 VSLADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAV  390 (712)
T ss_pred             HHhCCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEE
Confidence            7899999999999874  22332 46666654   457777664

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.25  E-value=3.2e-11  Score=115.40  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=76.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-h
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-P  166 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~-~  166 (215)
                      ..||+++|.++||||||++++++.++  ....+.+..+.....+.+++..  +.+|||+|..+          |..+. .
T Consensus       450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence            47999999999999999999999875  3444544556666667777765  56999999643          11111 2


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+++.+|++++|+|.++..+++.+. ++..+.+   .+.|+|||.
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~  568 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVF  568 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEE
Confidence            3468899999999999999988875 4444433   346766554

>cd00880 Era_like Era (E

Probab=99.23  E-value=8.5e-11  Score=89.22  Aligned_cols=102  Identities=18%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch-------hhccCCcEE
Q 028037          105 LLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI  175 (215)
Q Consensus       105 llGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~-------~~~~~a~~i  175 (215)
                      ++|..|+|||||++++.+..+.  ........+........+ ....+.+||++|...+.....       .++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999987555  122222222222333322 156899999999887654443       477899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|+|.++..+..... |......   .+.|+++|.
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~  111 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE---RGKPVLLVL  111 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEE
Confidence            9999999998877766 4444433   456655553

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.23  E-value=3.8e-11  Score=92.71  Aligned_cols=101  Identities=16%  Similarity=0.227  Sum_probs=66.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccchhhcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK  170 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~~~~~~  170 (215)
                      +|+++|++|+|||||++.+.++.+. ...++.+.+.....+..++   .+.+||++|...          +......|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999999977666 5555555544444444443   899999999533          3334444554


Q ss_pred             ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ---~a~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                         ..+++++++|.++..+  ...+..|+...      +.|+++|.
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~  117 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVL  117 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEE
Confidence               3568889999987632  23344565543      36755443

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.23  E-value=6e-11  Score=94.26  Aligned_cols=111  Identities=15%  Similarity=0.158  Sum_probs=84.1

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC---------Cc----cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE---------RS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~---------~~----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      .......||++.|+.++||||++.++.+....         .+    ..|+..||....+   +.+..+.++||+||++|
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHH
Confidence            34566889999999999999999999977631         11    1345566653332   23467899999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +.++..+++++++.+++.|.+....| +....++-+.....  +|++|.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~--ip~vVa~  128 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP--IPVVVAI  128 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC--CCEEEEe
Confidence            99999999999999999999999999 55555555544331  7877654

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.23  E-value=2.5e-11  Score=95.35  Aligned_cols=82  Identities=12%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc----hhhccCCcEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF  177 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~----~~~~~~a~~iil  177 (215)
                      ||+++|.++||||||++++.+ .+.....+.+.+       +++.    .+|||+|+......+    ...++++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~-~~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQG-NYTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcC-CCccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999764 443222233322       2222    269999974322111    223689999999


Q ss_pred             EEeCCChhhHHHHHHHHHHH
Q 028037          178 MFDLTSRCTLNSIVGWYSEA  197 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i  197 (215)
                      |||.++.+++  +..|+.++
T Consensus        71 v~d~~~~~s~--~~~~~~~~   88 (158)
T PRK15467         71 VHGANDPESR--LPAGLLDI   88 (158)
T ss_pred             EEeCCCcccc--cCHHHHhc
Confidence            9999999886  34566554

>cd04169 RF3 RF3 subfamily

Probab=99.22  E-value=9.3e-11  Score=99.88  Aligned_cols=107  Identities=9%  Similarity=0.106  Sum_probs=73.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC-C-C----------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE-Q-E----------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~-f-~----------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      -+|+++|-.|+|||||+++++... . .                ++.+   ..|.++......++...+++++|||+|++
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            469999999999999999997421 0 0                1111   12444555555666667899999999999


Q ss_pred             CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       160 ~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|......+++.+|++++|+|.++...- ....|++....   .++|++++.
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~---~~~P~iivv  130 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL---RGIPIITFI  130 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh---cCCCEEEEE
Confidence            9887677788999999999999876432 23344444433   346655443

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.22  E-value=5.3e-11  Score=111.74  Aligned_cols=108  Identities=11%  Similarity=0.186  Sum_probs=79.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCC---------Ccc---ccceeeeEEEEEEE-----CCeEEEEEEEecCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN--EQE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS  161 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~--~f~---------~~~---~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~  161 (215)
                      -+++++|..++|||||+.+|+..  .+.         ++.   .+.|.++....+.+     ++..+.+++|||+|+++|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            48999999999999999999863  111         111   13355555444433     566899999999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      ...+..+++.+|++|+|+|.++..+.+....|.....    .++|+|+ ++|
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNK  135 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNK  135 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEEC
Confidence            9888899999999999999999877777766765432    2456444 444

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.21  E-value=1.3e-11  Score=94.52  Aligned_cols=109  Identities=21%  Similarity=0.301  Sum_probs=88.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ...+++++|-.|+|||++..++.-++...+.||+|++..  ++  ..++.++++||.+||...+..|+.||.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cc--ccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            578999999999999999999999998888899998754  33  34779999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      .|.+|++...... ..+..+++..-.+..++++|
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~a  126 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA  126 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence            9999998777665 45555544332334444444

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.21  E-value=3.5e-10  Score=83.85  Aligned_cols=103  Identities=12%  Similarity=0.209  Sum_probs=64.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------cchhhcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK  170 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------~~~~~~~  170 (215)
                      +|+++|.+|+|||||++.+++....  ...+..........+.+++..  +.++||+|-..-..         .....+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999986432  222222222223455566655  46999999754311         1122247


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+|++++|+|.+++.. +.....+++++    .+.|+++|.
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~  114 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVL  114 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEE
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEE
Confidence            8999999999877422 22334444442    456666653

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.19  E-value=1.2e-10  Score=94.53  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee-eeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhh-----ccC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD  171 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~-~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~-----~~~  171 (215)
                      .+||+++|++|||||||++.+.+..+. ....+++. +.......+. .....+.+||++|..........|     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            379999999999999999999987665 33333331 1110111111 112368999999987544333333     567


Q ss_pred             CcEEEEEEeCCChhhHHHHH-HHHHHHHhH
Q 028037          172 AVAILFMFDLTSRCTLNSIV-GWYSEARKW  200 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~-~wl~~i~~~  200 (215)
                      +|+++++.|    .+|.+.. .|++.+++.
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~  106 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM  106 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh
Confidence            899888732    2455554 677777665

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.18  E-value=1.8e-10  Score=108.12  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             cCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhc--cCCcEEEE
Q 028037          107 GDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF  177 (215)
Q Consensus       107 Gd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~--~~a~~iil  177 (215)
                      |++|||||||++++.+..+. .+.+.+..+.....+..++.  ++++|||+|++++...      ...|+  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999999998876 66676667776666777654  5799999999987654      33443  37899999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+|.++.+   +-..|..++.+   .+.|+++|..
T Consensus        79 VvDat~le---r~l~l~~ql~~---~~~PiIIVlN  107 (591)
T TIGR00437        79 VVDASNLE---RNLYLTLQLLE---LGIPMILALN  107 (591)
T ss_pred             EecCCcch---hhHHHHHHHHh---cCCCEEEEEe
Confidence            99998743   22344444433   4578776654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.17  E-value=1.7e-10  Score=108.08  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEEEE--CCeEE----------EEEEEecCCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRS  161 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-----~t~g~~~~~~~v~~--~~~~~----------~l~i~Dt~G~e~~  161 (215)
                      +...|+++|..++|||||++++.+..+....     +++|..+.......  .+...          .+.+|||+|++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            4557999999999999999999866543222     24454433221100  11111          2689999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..++...+..+|++++|+|.++   +++++.+..+.    .   .++|++++.
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~----~---~~vpiIvvi  130 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINILK----R---RKTPFVVAA  130 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHH----H---cCCCEEEEE
Confidence            9988888899999999999998   78887765332    2   356765554

>PRK00089 era GTPase Era; Reviewed

Probab=99.16  E-value=2.5e-10  Score=98.05  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~~  166 (215)
                      +..-.|+++|.+|||||||++++++..+.  ...+ |+....  ..+... ...++.+|||+|......        ...
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i--~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRI--RGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccE--EEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            34668999999999999999999988764  2122 222221  122222 237899999999765432        223


Q ss_pred             hhccCCcEEEEEEeCCC
Q 028037          167 IACKDAVAILFMFDLTS  183 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~  183 (215)
                      ..+.++|++++|+|.++
T Consensus        80 ~~~~~~D~il~vvd~~~   96 (292)
T PRK00089         80 SSLKDVDLVLFVVDADE   96 (292)
T ss_pred             HHHhcCCEEEEEEeCCC
Confidence            35678999999999998

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.15  E-value=2.8e-10  Score=104.21  Aligned_cols=109  Identities=15%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchh---hccCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKDA  172 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~---~~~~a  172 (215)
                      .+|.|+|.++||||||++++.+.+.. ..++.+..+...-.+.+++  ..+.+||++|..+    ...+...   ++..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            58999999999999999999987654 3333222222233444444  5799999999632    2222222   35679


Q ss_pred             cEEEEEEeCCC----hhhHHHHHHHHHHHHhHCC-----------CCceEEEEe
Q 028037          173 VAILFMFDLTS----RCTLNSIVGWYSEARKWNQ-----------VTKQSLFFH  211 (215)
Q Consensus       173 ~~iilvfdit~----~~Sf~~i~~wl~~i~~~~~-----------~~~piIlVa  211 (215)
                      +++|+|+|+++    ++.++.+..|.+++.++..           .+.|+|||+
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVl  291 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVL  291 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEE
Confidence            99999999986    4577777888888876642           356766654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.15  E-value=1.6e-10  Score=95.90  Aligned_cols=108  Identities=18%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC--C----------Ccc---ccceeeeEEE--EEEEC--------CeEEEEEEEecC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ--E----------RSL---QMAGLNLINK--TLMVQ--------GARIAFSIWDVG  156 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f--~----------~~~---~t~g~~~~~~--~v~~~--------~~~~~l~i~Dt~  156 (215)
                      +|.++|..+.|||||+.+++...-  .          +..   ...|......  .+..+        +..+.+++|||+
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            589999999999999999974321  1          000   0112222211  12222        457899999999


Q ss_pred             CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      |+++|......+++.+|++++|||+++..+.+....|.. +..   .++| +++++|+
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~---~~~p~ilviNKi  135 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK---ERVKPVLVINKI  135 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH---cCCCEEEEEECC
Confidence            999999999999999999999999999877665333332 322   2344 5555654

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.13  E-value=1.7e-10  Score=104.34  Aligned_cols=89  Identities=10%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc--CCCC-C-----------------------------ccccceeeeEEEEEEEC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVG--NEQE-R-----------------------------SLQMAGLNLINKTLMVQ  144 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~--~~f~-~-----------------------------~~~t~g~~~~~~~v~~~  144 (215)
                      ....++|+++|..++|||||+.+++.  +... .                             ....+..+...  ..+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            34578999999999999999999985  2221 0                             01122233333  3344


Q ss_pred             CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhH
Q 028037          145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL  187 (215)
Q Consensus       145 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf  187 (215)
                      ...+.+.|||++|+++|.......+.++|++++|+|.++.+++
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~  124 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE  124 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc
Confidence            4457899999999998866555567899999999999998754

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.13  E-value=2.3e-10  Score=107.24  Aligned_cols=108  Identities=14%  Similarity=0.159  Sum_probs=81.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc--CCCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch
Q 028037          102 KISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP  166 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~--~~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~  166 (215)
                      +|+++|..++|||||+.+++.  +.|...             ....|.++..+...++...++++||||+|+++|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            689999999999999999986  344311             11336666666666666678999999999999988888


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      .+++.+|++++|+|.++. .+.....|+..+....   +| +++++|+
T Consensus        83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~---ip~IVviNKi  126 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALELG---LKPIVVINKI  126 (594)
T ss_pred             HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC---CCEEEEEECC
Confidence            899999999999999874 3455567777776543   44 5566654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.12  E-value=3.7e-10  Score=102.03  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=60.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------Cccc---cceeeeEEEEEEECCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---------------------------RSLQ---MAGLNLINKTLMVQGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~---------------------------~~~~---t~g~~~~~~~v~~~~~~  147 (215)
                      ...++|+++|..++|||||+.+++...-.                           +..+   ..|.........++...
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            45789999999999999999999832110                           0000   11322222233444456


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +++.+|||+|+++|.......+..+|++++|+|.++.
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~  120 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA  120 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC
Confidence            7899999999998865544556899999999999974

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.12  E-value=6.2e-10  Score=100.62  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=72.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------c-
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------V-  165 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~-  165 (215)
                      ..+||+++|.+++|||||++++++.+..  ...+.+..+.....+..++  ..+.+|||+|..+...+          . 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4699999999999999999999976532  4444333444334444555  45789999997543221          1 


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI  212 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~  212 (215)
                      ..+++.+|++|+|+|.++..+.++.. +...+.+.   +.|+ ++++|
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~---~~~~ivv~NK  293 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALEA---GRALVIVVNK  293 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc---CCcEEEEEEC
Confidence            23568899999999999988877654 33334332   3454 44444

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.11  E-value=1.5e-09  Score=85.28  Aligned_cols=106  Identities=11%  Similarity=0.068  Sum_probs=71.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhc--cC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~--~~  171 (215)
                      ++|+++|.++||||||+|++.+.+.. ..+|.+..+.....+.+++  ..+.+.|++|.-....      +...|+  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            58999999999999999999999876 6666555566666677766  6689999999543322      223343  58


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeecc
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII  214 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~~  214 (215)
                      .|+++.|.|.++.+.=.   ....++.+   -++|+|+|..++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e---~g~P~vvvlN~~  115 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLE---LGIPVVVVLNKM  115 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHH---TTSSEEEEEETH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHH---cCCCEEEEEeCH
Confidence            99999999998854322   33444443   348888876553

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.10  E-value=9.1e-10  Score=105.96  Aligned_cols=107  Identities=16%  Similarity=0.111  Sum_probs=74.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------chh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~~~  167 (215)
                      ..++|+++|.++||||||++++.+.... ...  .|.++..+...++....++++||++|...+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            3579999999999999999999987664 333  344444444445555678999999999876532          122


Q ss_pred             hc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       168 ~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ++  .++|++++|+|.++.+.   ...|..++.+.   ++|+++|...
T Consensus        80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVlNK  121 (772)
T PRK09554         80 YILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVALNM  121 (772)
T ss_pred             HHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEEEc
Confidence            33  47999999999988654   23455566543   4676666543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.07  E-value=4.6e-10  Score=91.97  Aligned_cols=84  Identities=14%  Similarity=0.190  Sum_probs=56.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-C--------------------------ccc---cceeeeEEEEEEECCeEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGARIAFS  151 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~--------------------------~~~---t~g~~~~~~~v~~~~~~~~l~  151 (215)
                      +|+++|..++|||||+++++...-. .                          ..+   ..|.........+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            5899999999999999999743211 1                          000   011111112222222345788


Q ss_pred             EEecCCCCCCCccchhhccCCcEEEEEEeCCChh
Q 028037          152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC  185 (215)
Q Consensus       152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~  185 (215)
                      +|||+|+++|.......+..+|++++|+|.++..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~  114 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV  114 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc
Confidence            9999999887655556678999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.07  E-value=9.3e-10  Score=98.44  Aligned_cols=108  Identities=16%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cc-eeeeEEEEEEECCeEEEEEEEecCCCCCCC----ccch---hhcc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACK  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~-g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----~~~~---~~~~  170 (215)
                      ..|.|+|.++||||||++++.+.+.. ..++ |+ ...+.  .+..++ ...+.++|++|..+-.    .+..   ..+.
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~G--iv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~  236 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLG--VVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE  236 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEE--EEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence            37999999999999999999976644 3333 22 32322  333332 2358899999975421    1222   2467


Q ss_pred             CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          171 DAVAILFMFDLT---SRCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit---~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      .++++++|+|++   +.+.++++..|++++..+..  .+.|+|||+
T Consensus       237 radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVl  282 (390)
T PRK12298        237 RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVF  282 (390)
T ss_pred             hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEE
Confidence            899999999998   66788999999999988753  245655543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.06  E-value=2.1e-10  Score=92.13  Aligned_cols=108  Identities=16%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchh---hccCCcEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAIL  176 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~---~~~~a~~ii  176 (215)
                      --|+++|++|+|||+|..++.++.+..+......+.   ...+ +...-.+.+.|++|+++.+.....   +...+.++|
T Consensus         4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            368999999999999999999997776555442222   1222 234456899999999998764433   478899999


Q ss_pred             EEEeCC-ChhhHHHHHHHHHHHHhH---CCCCceEEEEe
Q 028037          177 FMFDLT-SRCTLNSIVGWYSEARKW---NQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit-~~~Sf~~i~~wl~~i~~~---~~~~~piIlVa  211 (215)
                      +|.|.+ +...+..+.+++-++...   ....+||+|++
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIac  119 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIAC  119 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEE
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEE
Confidence            999987 355666666555555332   23567876654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13351 elongation factor G; Reviewed

Probab=99.06  E-value=3.3e-10  Score=108.10  Aligned_cols=108  Identities=14%  Similarity=0.178  Sum_probs=75.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCC-------------CC-Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNE-------------QE-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~-------------f~-~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      ..+|+++|..++|||||+++|+...             +. ++.+   ..+.........+.....++++|||+|+.+|.
T Consensus         8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~   87 (687)
T PRK13351          8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT   87 (687)
T ss_pred             ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence            5799999999999999999998531             11 1110   11222222222333346789999999999998


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .....+++.+|++++|+|.++..+++....| ..+.+.   ++|+++|.
T Consensus        88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~---~~p~iivi  132 (687)
T PRK13351         88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY---GIPRLIFI  132 (687)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc---CCCEEEEE
Confidence            8888999999999999999998887766555 334332   46655543

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.03  E-value=8.6e-10  Score=93.70  Aligned_cols=107  Identities=15%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-Ccc------cc----------ceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSL------QM----------AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~------~t----------~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      +|+++|.+|+|||||+++++...-. ...      .+          .+.........+.....++++|||+|...|...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999743211 000      00          011122222223333478899999999888777


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      ...+++.+|++++|+|.++.........|. .+..   .++|+++ ++|
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~---~~~p~iivvNK  125 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE---AGIPRIIFINK  125 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEEC
Confidence            788899999999999999876665444443 3333   2456444 444

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.02  E-value=1e-09  Score=101.57  Aligned_cols=109  Identities=10%  Similarity=0.093  Sum_probs=75.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc--CCC--------------C--Ccc---ccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG--NEQ--------------E--RSL---QMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~--~~f--------------~--~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ...+|+++|..++|||||+.+++.  +..              .  ++.   ...|..+......++...+++++|||+|
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            356999999999999999999973  110              0  001   1224455555555555568899999999


Q ss_pred             CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++.|......+++.+|++|+|+|.++.-.- ....++...+.   .++|++++.
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~i  138 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFI  138 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEE
Confidence            999987777788999999999999885322 23445544433   356755543

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.02  E-value=1.9e-09  Score=93.98  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=57.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-Ccc------ccceeeeEEEE---------------EEECC-eEEEEEEEecCCC-
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSL------QMAGLNLINKT---------------LMVQG-ARIAFSIWDVGGD-  158 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~-~~~------~t~g~~~~~~~---------------v~~~~-~~~~l~i~Dt~G~-  158 (215)
                      |.++|.++||||||++++.+..+. ..+      |+.|..+....               ...++ ..+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            578999999999999999988754 222      33343332110               11233 3478999999998 


Q ss_pred             ---CCCCccchhh---ccCCcEEEEEEeCCC
Q 028037          159 ---SRSFDHVPIA---CKDAVAILFMFDLTS  183 (215)
Q Consensus       159 ---e~~~~~~~~~---~~~a~~iilvfdit~  183 (215)
                         +++..+...+   ++++|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               5566666665   899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=5.3e-10  Score=87.54  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .-|++++|-.++|||||++.+.+++.....||.-..  +..+.+.|  ++++.+|.+|+...+..+..|+..+|++++.+
T Consensus        20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv   95 (193)
T KOG0077|consen   20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV   95 (193)
T ss_pred             CceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence            569999999999999999999999887666665433  23444544  77999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCC-CCceEE-EEeec
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQ-VTKQSL-FFHII  213 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~-~~~piI-lVa~~  213 (215)
                      |..|.+-|.+.+.-++.+..... .++|++ +-+|+
T Consensus        96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKI  131 (193)
T KOG0077|consen   96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKI  131 (193)
T ss_pred             ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccc
Confidence            99999999999987777655432 456654 44443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.00  E-value=1.3e-09  Score=104.56  Aligned_cols=85  Identities=11%  Similarity=0.087  Sum_probs=65.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC---------------CCC-C---ccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN---------------EQE-R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~---------------~f~-~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      ..+|+++|..++|||||+.+|+..               .+. +   ...|+...+.......++..+++++|||+|+.+
T Consensus        19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~   98 (720)
T TIGR00490        19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD   98 (720)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence            579999999999999999999752               222 1   111344333334444667789999999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCCh
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      |.......++.+|++|+|+|..+.
T Consensus        99 f~~~~~~al~~aD~~llVvda~~g  122 (720)
T TIGR00490        99 FGGDVTRAMRAVDGAIVVVCAVEG  122 (720)
T ss_pred             cHHHHHHHHHhcCEEEEEEecCCC
Confidence            988788889999999999999874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.98  E-value=2.8e-09  Score=98.80  Aligned_cols=110  Identities=10%  Similarity=0.072  Sum_probs=76.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc-CCCC-----------------Cc---cccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG-NEQE-----------------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~-~~f~-----------------~~---~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ...+|+++|..++|||||+.+++. ....                 ++   ....|..+......++...+++++|||+|
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            357999999999999999999852 1111                 11   11235555555666666778999999999


Q ss_pred             CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI  212 (215)
Q Consensus       158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~  212 (215)
                      +..|......+++.+|++|+|+|.++.- ......+++..+.   .++|++ +++|
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNK  141 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNK  141 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEEC
Confidence            9988876777889999999999998741 1223455554443   346655 4444

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.96  E-value=2.8e-09  Score=86.95  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=58.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC--C-C-Ccc--ccceeeeEEEEEE-----------------------EC--C----
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE--Q-E-RSL--QMAGLNLINKTLM-----------------------VQ--G----  145 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~--f-~-~~~--~t~g~~~~~~~v~-----------------------~~--~----  145 (215)
                      ++|.++|..|+|||||+..+..-.  . . +..  .++...+......                       ..  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            368999999999999999986431  1 1 100  0111111110000                       00  1    


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----hhHHHHHHH
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGW  193 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----~Sf~~i~~w  193 (215)
                      ....+.+|||+|+++|.......+..+|++++|+|.+++    ++++.+..|
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~  132 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL  132 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH
Confidence            126799999999988766666667788999999999873    445544443

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.95  E-value=6.2e-09  Score=90.01  Aligned_cols=85  Identities=22%  Similarity=0.235  Sum_probs=54.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchh-------
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI-------  167 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~-------  167 (215)
                      +...++|+++|.+||||||++|++++.+..  ...++.+..........+  ..++.++||+|..+.......       
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            355799999999999999999999987642  222222222211222234  367999999997764322211       


Q ss_pred             hc--cCCcEEEEEEeCCC
Q 028037          168 AC--KDAVAILFMFDLTS  183 (215)
Q Consensus       168 ~~--~~a~~iilvfdit~  183 (215)
                      +.  .+.|++|+|.+++.
T Consensus       113 ~l~~~g~DvVLyV~rLD~  130 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDA  130 (313)
T ss_pred             HhhcCCCCEEEEEeccCc
Confidence            11  26899999976653

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.90  E-value=1.3e-08  Score=91.20  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc------cceeeeEEEEE---------------EECC-eEEEEEEEecCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ------MAGLNLINKTL---------------MVQG-ARIAFSIWDVGG  157 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~------t~g~~~~~~~v---------------~~~~-~~~~l~i~Dt~G  157 (215)
                      +||.++|.++||||||++++.+.++. ..++      +.|..+....+               ..++ ..+.+++||++|
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            68999999999999999999988776 3333      22322210000               0122 347899999999


Q ss_pred             C----CCCCccchhh---ccCCcEEEEEEeCC
Q 028037          158 D----SRSFDHVPIA---CKDAVAILFMFDLT  182 (215)
Q Consensus       158 ~----e~~~~~~~~~---~~~a~~iilvfdit  182 (215)
                      -    ++...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    4455566666   78999999999997

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.89  E-value=1.8e-08  Score=90.42  Aligned_cols=84  Identities=23%  Similarity=0.410  Sum_probs=68.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~  168 (215)
                      .-+|++++|.++||||||+|.+.+.+-.  ...+.+.-|+-...+.++|  +.+.+.||+|-.+..+..        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            3589999999999999999999988765  5666555677777888887  568899999987655432        344


Q ss_pred             ccCCcEEEEEEeCCCh
Q 028037          169 CKDAVAILFMFDLTSR  184 (215)
Q Consensus       169 ~~~a~~iilvfdit~~  184 (215)
                      ...||.+++|+|.+.+
T Consensus       294 i~~ADlvL~v~D~~~~  309 (454)
T COG0486         294 IEEADLVLFVLDASQP  309 (454)
T ss_pred             HHhCCEEEEEEeCCCC
Confidence            6899999999999996

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.87  E-value=1.5e-08  Score=95.55  Aligned_cols=88  Identities=14%  Similarity=0.133  Sum_probs=60.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc---CCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVG---NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~---~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      -|.++|..++|||||++++.+   +.+. +....+..+.....+...+ ...+.+||++|+++|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            478999999999999999985   3333 2212222222222222222 2348999999999986666667889999999


Q ss_pred             EEeCCC---hhhHHHH
Q 028037          178 MFDLTS---RCTLNSI  190 (215)
Q Consensus       178 vfdit~---~~Sf~~i  190 (215)
                      |+|.++   +++.+.+
T Consensus        81 VVda~eg~~~qT~ehl   96 (614)
T PRK10512         81 VVACDDGVMAQTREHL   96 (614)
T ss_pred             EEECCCCCcHHHHHHH
Confidence            999987   5665554

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.84  E-value=2.6e-08  Score=89.24  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=70.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-c--------cchhhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-D--------HVPIAC  169 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~--------~~~~~~  169 (215)
                      ..|+++|-++||||||.||+++.+..  +..|.+.-|-......+.+..  +.+.||+|-+... .        .....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999988766  555533333333455555544  8999999987533 1        223446


Q ss_pred             cCCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          170 KDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       170 ~~a~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ..||++|||+|...--+  =+.+.+|+.      ..+.|+|||+.
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr------~~~kpviLvvN  120 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR------RSKKPVILVVN  120 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH------hcCCCEEEEEE
Confidence            78999999999887433  123334443      14577777653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.83  E-value=2.4e-08  Score=89.54  Aligned_cols=88  Identities=10%  Similarity=0.172  Sum_probs=61.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC-------CC----C-Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQ----E-RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~-------~f----~-~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ....++|+++|-.++|||||+.++.+.       .+    . +..   ...|.......+.++....++.+|||+|+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            345789999999999999999999732       01    0 100   11233333344555555678899999999987


Q ss_pred             CccchhhccCCcEEEEEEeCCCh
Q 028037          162 FDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ..........+|++++|+|.++.
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g  111 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDG  111 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCC
Confidence            64444445677999999999873

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=98.83  E-value=7.9e-09  Score=83.10  Aligned_cols=111  Identities=11%  Similarity=0.148  Sum_probs=72.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc-------------c---ccceeeeEEEEEEEC--CeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------L---QMAGLNLINKTLMVQ--GARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~-------------~---~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~  160 (215)
                      ..+|.++|..++|||||+.++....-. ..             .   ...+...........  .....++++|++|+..
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~   82 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED   82 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence            578999999999999999999854321 00             0   011222222222332  5568899999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      |........+.+|++|+|.|..+.-.-+ ....+..+....-+  .+++++|+
T Consensus        83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~~p--~ivvlNK~  132 (188)
T PF00009_consen   83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELGIP--IIVVLNKM  132 (188)
T ss_dssp             HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT-S--EEEEEETC
T ss_pred             eeecccceecccccceeeeecccccccc-cccccccccccccc--eEEeeeec
Confidence            8777777789999999999998764432 23444445443312  45555553

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.82  E-value=9.8e-09  Score=92.39  Aligned_cols=87  Identities=13%  Similarity=0.126  Sum_probs=58.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccc------cceeeeEE----------------EEEEECC------eEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ------MAGLNLIN----------------KTLMVQG------ARIA  149 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~------t~g~~~~~----------------~~v~~~~------~~~~  149 (215)
                      ...++|+++|..++|||||+..+.+.....+..      |+...+..                .....++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            357899999999999999999986532211111      11111110                0000011      1467


Q ss_pred             EEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       150 l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +++||++|+++|..........+|++++|+|.++.
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g  116 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEP  116 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC
Confidence            99999999999877666677789999999999963

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.80  E-value=4.2e-08  Score=82.83  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=53.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---c-------
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H-------  164 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---~-------  164 (215)
                      ....++|+++|.+|||||||++.+.+....  .................++  .++.+|||+|-.....   .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            344789999999999999999999987653  2121111122112223344  5689999999765421   1       


Q ss_pred             chhhcc--CCcEEEEEEeCCC
Q 028037          165 VPIACK--DAVAILFMFDLTS  183 (215)
Q Consensus       165 ~~~~~~--~a~~iilvfdit~  183 (215)
                      ...|+.  ..+++++|..++.
T Consensus       106 I~~~l~~~~idvIL~V~rlD~  126 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDM  126 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCC
Confidence            122332  5788888876664

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.80  E-value=1.7e-08  Score=83.28  Aligned_cols=83  Identities=13%  Similarity=0.175  Sum_probs=56.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC---------------------------CCCccc---cceeeeEEEEEEECCeEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE---------------------------QERSLQ---MAGLNLINKTLMVQGARIAFS  151 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~---------------------------f~~~~~---t~g~~~~~~~v~~~~~~~~l~  151 (215)
                      +|+++|..++|||||+.+++...                           +.++.+   ..|.........+.....++.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            48999999999999999986320                           001111   112222222233333457899


Q ss_pred             EEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +|||+|+..|.......+..+|++++|+|.++.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~  113 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG  113 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence            999999987765555566789999999999985

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.79  E-value=3.4e-08  Score=84.30  Aligned_cols=108  Identities=12%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      +|.++|-.++|||||+++++.  +...            ++.+   ..|.........+.....++.+|||+|..+|...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            488999999999999999973  1100            1111   1133333333333334578899999999988877


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ...+++.+|++++|.|.++...-+ ....+..+.+.   ++| +++++|+
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~  126 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKM  126 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECC
Confidence            888899999999999998753222 23344444433   345 4555553

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.77  E-value=4.3e-08  Score=79.78  Aligned_cols=110  Identities=11%  Similarity=0.121  Sum_probs=71.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~-------f~-----~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      .++|.++|-.++|||||+.+++...       ..     +..+   ..|.........+.....++.+.||+|...|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            4789999999999999999998531       00     1101   2244444444445455567899999999887665


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      ....+..+|++++|.|.+..-.- .....+..+.+.   ++|  |++++|+
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~~---~~~~iIvviNK~  128 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTREHLLLARQV---GVPYIVVFLNKA  128 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCcEEEEEeCC
Confidence            56667899999999998864221 222334444433   344  4567775

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.76  E-value=4.4e-08  Score=81.40  Aligned_cols=107  Identities=9%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccc------------------------cceeeeEEEEEE-------------EC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ------------------------MAGLNLINKTLM-------------VQ  144 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~------------------------t~g~~~~~~~v~-------------~~  144 (215)
                      ||+++|+.++|||||+.+|..+.|.+...                        ..|.+...+.+.             +.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999877652100                        112221111000             01


Q ss_pred             CeEEEEEEEecCCCCCCCccchhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037          145 GARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHI  212 (215)
Q Consensus       145 ~~~~~l~i~Dt~G~e~~~~~~~~~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~  212 (215)
                      .....+.+.|++|+++|.......+  ..+|++++|.|.+...+ ..-..++..+....   +| +++++|
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~---ip~ivvvNK  147 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN---IPVFVVVTK  147 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC---CCEEEEEEC
Confidence            1235789999999998754333333  36899999999876543 22234555554433   45 444444

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd00066 G-alpha G protein alpha subunit

Probab=98.75  E-value=6.7e-08  Score=84.32  Aligned_cols=65  Identities=17%  Similarity=0.328  Sum_probs=51.2

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----------~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      .+.+.+||++||...+..|..|+.+++++++|.|+++.          +.+++....++.+-.... .++|++|++
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~  235 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL  235 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence            57899999999999999999999999999999999984          445555555555544332 578888775

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.74  E-value=4e-08  Score=93.95  Aligned_cols=109  Identities=14%  Similarity=0.119  Sum_probs=71.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      --+|.++|-.++|||||+++++..  ...            ++.+   ..|.........+.-.+.++++|||+|+.+|.
T Consensus        10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~   89 (689)
T TIGR00484        10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT   89 (689)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence            458999999999999999999731  110            0000   11222222222332235789999999999988


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI  212 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~  212 (215)
                      .....+++.+|++++|+|.++....+...-| ..+++.   ++|+ ++++|
T Consensus        90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~---~~p~ivviNK  136 (689)
T TIGR00484        90 VEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY---EVPRIAFVNK  136 (689)
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc---CCCEEEEEEC
Confidence            8788889999999999999987665544333 344433   3454 44555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.73  E-value=4e-08  Score=88.63  Aligned_cols=94  Identities=16%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccceeeeEEEEE----------------EEC--C----eEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL------QMAGLNLINKTL----------------MVQ--G----ARIA  149 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~------~t~g~~~~~~~v----------------~~~--~----~~~~  149 (215)
                      ...++|+++|..++|||||+.++.+.......      -|+...+....+                .++  +    ....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            44799999999999999999988543111111      122221110000                011  1    1368


Q ss_pred             EEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHH
Q 028037          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIV  191 (215)
Q Consensus       150 l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~  191 (215)
                      +++|||+|+++|..........+|++++|+|.++    .++++.+.
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~  132 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM  132 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH
Confidence            9999999998775433333445799999999995    44444443

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.73  E-value=1.4e-08  Score=83.86  Aligned_cols=113  Identities=18%  Similarity=0.293  Sum_probs=76.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCcccccee--eeEEEEEEECCeEEEEEEEecCCCCCC-----CccchhhccCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA  172 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~-----~~~~~~~~~~a  172 (215)
                      .-||+++|-+|+||||+-.-+..+.........|.  |+.--.+.+-| ++.|++||.+||+.+     ....+..+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            46999999999999999776664433211122222  33222222222 478999999999953     33556678999


Q ss_pred             cEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeec
Q 028037          173 VAILFMFDLTSRCTLNSI---VGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i---~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ++++.+||+.+++--..+   +.-++.+.++.+.....++++|+
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKm  126 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKM  126 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeec
Confidence            999999999998544444   45566677777666667777765

>PRK12735 elongation factor Tu; Reviewed

Probab=98.73  E-value=7.5e-08  Score=86.40  Aligned_cols=112  Identities=12%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC-------CCC-----Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN-------EQE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~-------~f~-----~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      ...++|.++|-.++|||||+.++++.       .+.     +..   ...|.........++....++.++||+|+++|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            45789999999999999999999852       110     110   122443333344444445678999999998775


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE--EEeec
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL--FFHII  213 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI--lVa~~  213 (215)
                      .........+|++++|+|.++...- ...+++..+..   .++|.+  +++|+
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~  138 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKC  138 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEec
Confidence            5444556788999999999874322 22234444433   346633  46764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.70  E-value=1.9e-07  Score=75.63  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cc---h
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P  166 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~--~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~---~  166 (215)
                      ++|+++|.+|||||||++.+++.+.. ...  +....+........++  ..+.+.||+|-.....        +.   .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987543 221  1111122222333444  4689999999655421        11   1


Q ss_pred             hhccCCcEEEEEEeCCC
Q 028037          167 IACKDAVAILFMFDLTS  183 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~  183 (215)
                      ....+.|++|+|.|..+
T Consensus        79 ~~~~g~~~illVi~~~~   95 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR   95 (196)
T ss_pred             hcCCCCEEEEEEEECCC
Confidence            12357899999999886

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PLN03126 Elongation factor Tu; Provisional

Probab=98.69  E-value=9.8e-08  Score=87.57  Aligned_cols=113  Identities=10%  Similarity=0.095  Sum_probs=73.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC------CCC------C---ccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------~f~------~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ....++|+++|..++|||||+.+++..      ...      +   .....|.........++....++.++|++|+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            455789999999999999999999852      111      0   0112233333333334334567899999999988


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      ..........+|++++|+|.++...- ...+++..+...   ++|  |++++|+
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~  207 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQ  207 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecc
Confidence            65555556789999999998865322 224444444443   355  4567775

>PRK12736 elongation factor Tu; Reviewed

Probab=98.67  E-value=1.3e-07  Score=84.72  Aligned_cols=113  Identities=11%  Similarity=0.126  Sum_probs=70.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCC-------CC-----Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~-------f~-----~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ....++|+++|-.++|||||+.++++..       +.     +..   ...|.........++.....+.++||+|+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            3447899999999999999999998521       10     000   12243333334445445567899999999887


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      ......-...+|++++|+|.++...- .-..++..+...   ++|  |++++|+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~~---g~~~~IvviNK~  138 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQV---GVPYLVVFLNKV  138 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHHc---CCCEEEEEEEec
Confidence            54444445788999999998863211 112333334332   456  4557764

>smart00275 G_alpha G protein alpha subunit

Probab=98.66  E-value=1.4e-07  Score=83.20  Aligned_cols=66  Identities=15%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~----------~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      .+.+.+||++||...+..|..|+.+++++++|.|+++.          ..+++....++.+-... -.++|++|++.
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~N  259 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLN  259 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEe
Confidence            35689999999999999999999999999999999973          34666656666655432 25688887763

Subunit of G proteins that contains the guanine nucleotide binding site

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.65  E-value=4e-08  Score=89.49  Aligned_cols=91  Identities=13%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCC--------------------------C-Cccc---cceeeeEEEEEEECCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ--------------------------E-RSLQ---MAGLNLINKTLMVQGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f--------------------------~-~~~~---t~g~~~~~~~v~~~~~~  147 (215)
                      ...++++++|-.++|||||+-+++..--                          . +..+   ..|.........+....
T Consensus         5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~   84 (447)
T PLN00043          5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK   84 (447)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence            4578999999999999999998873110                          0 1111   11333333344455566


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHH
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS  189 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~  189 (215)
                      ..+++.|++|+++|.......+..+|++|+|+|.++ .+|+.
T Consensus        85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~  125 (447)
T PLN00043         85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEA  125 (447)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-Cceec
Confidence            789999999999998888888899999999999987 45553

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.64  E-value=3.4e-07  Score=84.06  Aligned_cols=113  Identities=11%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      ..+..-+++.++|+.++|||.|++.|++..+. .+..+....+....+.+.|+.-.+-+-|.+-. ....+...- ..+|
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            33455689999999999999999999999888 55567777777777888788888888887755 333333322 6789


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++.++||.+++.||+.+...++.-...  ..+|++.||
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va  533 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVA  533 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEe
Confidence            999999999999999988766554433  679998887

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.62  E-value=6.3e-08  Score=81.85  Aligned_cols=109  Identities=16%  Similarity=0.228  Sum_probs=69.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-ccceeeeEEE-EEEECCeEEEEEEEecCCCCC-------CCccchh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVPI  167 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-~t~g~~~~~~-~v~~~~~~~~l~i~Dt~G~e~-------~~~~~~~  167 (215)
                      .....+++++|..|+|||||+|.+++++..+.. -..|.+.... ...+++  -.+.|||++|-++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            445789999999999999999999976654211 1222222111 112233  4589999999776       5555667


Q ss_pred             hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE
Q 028037          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF  209 (215)
Q Consensus       168 ~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl  209 (215)
                      ++...|.++.+.+..|+.= .--.+.+.++....-+ .++++
T Consensus       114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~-~~~i~  153 (296)
T COG3596         114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLD-KRVLF  153 (296)
T ss_pred             HhhhccEEEEeccCCCccc-cCCHHHHHHHHHhccC-ceeEE
Confidence            7889999999999988742 2223555555544422 44443

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.60  E-value=3.7e-07  Score=81.95  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=73.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----------CCccc-
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV-  165 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----------~~~~~-  165 (215)
                      ..+||+++|-++||||||+|++++.+-.  ...+.+..|.-...+..+++.  +.+.||+|-.+          |.... 
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999988765  445544445555566666654  67899999544          22111 


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ......+|++++|.|.+..-+-+..+ ....+.+.  ....+|+|+|
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNK  298 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNK  298 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEc
Confidence            22356899999999999876655433 22222222  3455666765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.59  E-value=3.6e-08  Score=89.77  Aligned_cols=112  Identities=20%  Similarity=0.353  Sum_probs=89.4

Q ss_pred             CCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCC
Q 028037           93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA  172 (215)
Q Consensus        93 ~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a  172 (215)
                      .-.....++|+-++|+.++|||+|++||+.+.|.....+.|..|. +.+.+++....+-+.|.+|...     .+|..+.
T Consensus        23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wv   96 (749)
T KOG0705|consen   23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWV   96 (749)
T ss_pred             eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCch-----hhhhhhc
Confidence            344456689999999999999999999999999965667776665 6667788889999999888332     3577899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEE
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFF  210 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlV  210 (215)
                      |++|+||.+.|.+||+.++.+.-++..+.. ..+|+++|
T Consensus        97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lv  135 (749)
T KOG0705|consen   97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILV  135 (749)
T ss_pred             cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhh
Confidence            999999999999999999988777754432 45665554

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.58  E-value=4.1e-07  Score=78.00  Aligned_cols=114  Identities=12%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             CCCCCCCCceeeeEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---
Q 028037           90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQER---SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---  163 (215)
Q Consensus        90 ~~~~~~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---  163 (215)
                      .+.+...+...+.|.++|.++||||||.|++++.+...   -..|+-.+.   .-.+-....++-++||+|--.-..   
T Consensus        62 esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~  138 (379)
T KOG1423|consen   62 ESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRR  138 (379)
T ss_pred             cCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhh
Confidence            33445666778999999999999999999999887652   112222111   111223467899999999432111   


Q ss_pred             ---------cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE
Q 028037          164 ---------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF  209 (215)
Q Consensus       164 ---------~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl  209 (215)
                               --......||++++++|.++....-+ ...+..++++.  ++|-+|
T Consensus       139 ~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~l  190 (379)
T KOG1423|consen  139 HHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSIL  190 (379)
T ss_pred             HHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCcee
Confidence                     01122467999999999997433222 23444555553  456443

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.58  E-value=1.3e-07  Score=72.69  Aligned_cols=54  Identities=22%  Similarity=0.343  Sum_probs=40.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      +++++|.+|||||||++++.+.++.......|.+.....+.+++   .+.||||+|-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999887753333334444445556654   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>CHL00071 tufA elongation factor Tu

Probab=98.57  E-value=4.4e-07  Score=81.83  Aligned_cols=113  Identities=9%  Similarity=0.095  Sum_probs=71.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCC-------------C--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ-------------E--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f-------------~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ....++|+++|-.++|||||++++++..-             .  +.....|.........+.....++.+.||+|+.+|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            44579999999999999999999986311             0  00011233333333334444567889999998877


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeec
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-S-LFFHII  213 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-i-IlVa~~  213 (215)
                      ..........+|++++|.|.++.-. ..-...+..+...   ++| + ++++|+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~  138 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKE  138 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEcc
Confidence            5555555678999999999886422 2223334444332   466 3 557764

>COG1159 Era GTPase [General function prediction only]

Probab=98.55  E-value=8.7e-07  Score=75.72  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------ch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~  166 (215)
                      +..--|.++|.++||||||+|++++....  ...+ |+-...  ..+...+ +.++-+.||+|-.+-...        ..
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I--~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhhe--eEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            45678999999999999999999998765  2222 443222  2233322 678899999997654322        23


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCce-EEEEee
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQVTKQ-SLFFHI  212 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~-wl~~i~~~~~~~~p-iIlVa~  212 (215)
                      ..+.++|++++|.|.++.-.  .-.. .++.+++   .+.| +++++|
T Consensus        81 ~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNK  123 (298)
T COG1159          81 SALKDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNK  123 (298)
T ss_pred             HHhccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEc
Confidence            34678999999999887432  2333 3444444   2345 444454

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=4.4e-07  Score=81.94  Aligned_cols=99  Identities=18%  Similarity=0.242  Sum_probs=69.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCc--------cch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFD--------HVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~--------~~~  166 (215)
                      ...++|+++|.++||||||+|.+...+..  ...+.+.-|.-...++++|  +++.+.||+|-.+ -..        ...
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~  343 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR  343 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence            33589999999999999999999988765  4444333344445666776  5678899999665 111        123


Q ss_pred             hhccCCcEEEEEEeC--CChhhHHHHHHHHHHHH
Q 028037          167 IACKDAVAILFMFDL--TSRCTLNSIVGWYSEAR  198 (215)
Q Consensus       167 ~~~~~a~~iilvfdi--t~~~Sf~~i~~wl~~i~  198 (215)
                      .-.+.+|++++|+|.  ++-++-..+.+.++...
T Consensus       344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~  377 (531)
T KOG1191|consen  344 KRIERADVILLVVDAEESDTESDLKIARILETEG  377 (531)
T ss_pred             HHHhhcCEEEEEecccccccccchHHHHHHHHhc
Confidence            335789999999999  55555555556665553

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.52  E-value=2.8e-07  Score=82.97  Aligned_cols=84  Identities=14%  Similarity=0.234  Sum_probs=56.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--C---------------------------ccc---cceeeeEEEEEEECCeEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQGARI  148 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~---------------------------~~~---t~g~~~~~~~v~~~~~~~  148 (215)
                      ++|+++|-.++|||||+.+++...-.  .                           ..+   ..|.........+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999999633111  0                           000   012222222223333446


Q ss_pred             EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ++.++||+|+++|.......+..+|++++|+|.++.
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G  116 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG  116 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            889999999998865445567899999999998764

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.51  E-value=7.1e-07  Score=72.34  Aligned_cols=106  Identities=10%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeeeEEEEEEECCeEEEEEEEecCCC----------CCCCccchh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f-~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----------e~~~~~~~~  167 (215)
                      ...-|+++|-++|||||||+.+++..- .....|.|..-....+.+++.   +.+.|.+|-          ++...+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            356899999999999999999999663 354455665544444555544   778999983          334455566


Q ss_pred             hccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          168 ACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       168 ~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |++.   -.+++++.|....-.-.+. +.++.+..   .++|+++|+
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~  142 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVL  142 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEE
Confidence            6643   4677888888765443222 22333322   357777665

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.50  E-value=1.7e-07  Score=72.52  Aligned_cols=73  Identities=22%  Similarity=0.347  Sum_probs=47.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC----CCCccchhhccCCcEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKDAVAIL  176 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e----~~~~~~~~~~~~a~~ii  176 (215)
                      -||+++|..|+|||||++++.+.+.. +..|....|...            +.||+|.=    .|....-....+||.++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~~~~~------------~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIEYYDN------------TIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC-cCccceeEeccc------------EEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            38999999999999999999976653 333444444322            35777631    12222222335788888


Q ss_pred             EEEeCCChhh
Q 028037          177 FMFDLTSRCT  186 (215)
Q Consensus       177 lvfdit~~~S  186 (215)
                      ++.|.+++.+
T Consensus        69 ll~dat~~~~   78 (143)
T PF10662_consen   69 LLQDATEPRS   78 (143)
T ss_pred             EEecCCCCCc
Confidence            8888887644

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.49  E-value=6e-07  Score=82.40  Aligned_cols=88  Identities=14%  Similarity=0.200  Sum_probs=58.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------------------------cc---cceeeeEEEEEEEC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS----------------------------LQ---MAGLNLINKTLMVQ  144 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~----------------------------~~---t~g~~~~~~~v~~~  144 (215)
                      ....++|+++|-.++|||||+.+++...-. ..                            .+   ..|.........+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            345699999999999999999999744211 00                            00   01222222222233


Q ss_pred             CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       145 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ....++.++||+|+++|......-...+|++++|+|.++.
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G  143 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG  143 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            3456789999999988854444446899999999998764

>PRK00049 elongation factor Tu; Reviewed

Probab=98.49  E-value=9.8e-07  Score=79.23  Aligned_cols=112  Identities=9%  Similarity=0.107  Sum_probs=72.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCC-------C-----Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-------E-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f-------~-----~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      ...++|+++|-.++|||||+.++++...       .     +..+   ..|.........+.....++.+.||+|+.+|.
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~   89 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence            4578999999999999999999986210       0     0000   22333333344444445678899999998775


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE--EEeec
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL--FFHII  213 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI--lVa~~  213 (215)
                      .........+|++++|.|.++... .....++..+...   ++|.+  +++|+
T Consensus        90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~  138 (396)
T PRK00049         90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKC  138 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeec
Confidence            555555789999999999887432 2223444444433   36743  46764

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.46  E-value=1.5e-06  Score=75.22  Aligned_cols=105  Identities=21%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccc--eeeeEEEEEEECCeEEEEEEEecCCCCC--CCccchh------h
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPI------A  168 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~--g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~~------~  168 (215)
                      ...|++.|.++||||||++.+.+.+-. ..+|.+  ++...  .+  +.....+|+.||+|--.  ...+++.      .
T Consensus       168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vG--hf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVG--HF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEe--ee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            467999999999999999999988777 555522  33322  22  33446899999999432  2222211      1


Q ss_pred             c-cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          169 C-KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       169 ~-~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      + .=+++++++||.+..+  |.+.=...+++++..-.  .|+++|
T Consensus       244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V  286 (346)
T COG1084         244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVV  286 (346)
T ss_pred             HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEE
Confidence            1 2368899999988754  44554578899988764  555544

>PLN03127 Elongation factor Tu; Provisional

Probab=98.45  E-value=2e-06  Score=78.41  Aligned_cols=113  Identities=11%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC------CCC------Cc---cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------~f~------~~---~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ....++|+++|-.++|||||+.++.+.      ...      +.   ....|.........++....++.+.||+|+++|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            345789999999999999999999621      110      00   001233333334444445567899999999887


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      ......-...+|++++|.|.++...-+ -.+.+..+..   .++|  |++++|+
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKi  187 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKV  187 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEee
Confidence            554444456799999999987643211 2233333333   2366  4567775

>PRK12740 elongation factor G; Reviewed

Probab=98.45  E-value=3.7e-07  Score=87.05  Aligned_cols=103  Identities=14%  Similarity=0.135  Sum_probs=67.0

Q ss_pred             EcCCCCCHHHHHHHHhcCCC--------C------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhh
Q 028037          106 LGDCQIGKTSFVVKYVGNEQ--------E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  168 (215)
Q Consensus       106 lGd~~vGKTSLi~r~~~~~f--------~------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~  168 (215)
                      +|..++|||||+++++...-        .      ++..   ..|.........+....+.+++|||+|+.+|......+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            58899999999999953211        0      1100   11222222223333345789999999999887777788


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI  212 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~  212 (215)
                      ++.+|++++|+|.++..+.+....|. .+..   .++|++ +++|
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~---~~~p~iiv~NK  121 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK---YGVPRIIFVNK  121 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH---cCCCEEEEEEC
Confidence            89999999999999887766554443 3333   245644 4444

>cd01859 MJ1464 MJ1464

Probab=98.44  E-value=6e-07  Score=69.84  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ..+++++|.++||||||++++.++......++.|.......+..++   .+.+|||+|
T Consensus       101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            5788999999999999999999766445556666544333333333   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.43  E-value=2e-06  Score=74.32  Aligned_cols=95  Identities=16%  Similarity=0.214  Sum_probs=65.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CC---ccchhhccC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SF---DHVPIACKD  171 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~---~~~~~~~~~  171 (215)
                      ...++++|.++||||||++.+.+-+.. ..++.+..+.-.-.+.++  ..++||.|++|--+    -.   ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~--ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK--GAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeec--CceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            468999999999999999999987766 444433233323344444  47799999997432    11   223345689


Q ss_pred             CcEEEEEEeCCChhh-HHHHHHHHHH
Q 028037          172 AVAILFMFDLTSRCT-LNSIVGWYSE  196 (215)
Q Consensus       172 a~~iilvfdit~~~S-f~~i~~wl~~  196 (215)
                      ||.+++|.|+....+ .+.+.+-+++
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~  166 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELED  166 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHh
Confidence            999999999997766 5555544444

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=98.42  E-value=3.1e-06  Score=66.18  Aligned_cols=62  Identities=10%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             EEEEEecCCCCC----CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          149 AFSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       149 ~l~i~Dt~G~e~----~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .+.|.||+|-..    ...+...|+..+|++|+|.+.+...+-.....|.+......  +.-++|++|
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk  167 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNK  167 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcC
Confidence            588999999643    34667888899999999999998666556666666665443  335555555

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.40  E-value=1.3e-06  Score=74.98  Aligned_cols=61  Identities=18%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------cccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~----------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ..++|+|+|++|+|||||++.+++.... ..          ..+..+......+.-++..+.|.++||+|-.
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfG   74 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFG   74 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcc
Confidence            3689999999999999999999987655 21          0122333333444457889999999999943

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK12739 elongation factor G; Reviewed

Probab=98.40  E-value=7.5e-07  Score=85.30  Aligned_cols=110  Identities=15%  Similarity=0.136  Sum_probs=69.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--C---C---C------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--E---Q---E------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~---f---~------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      ..+|.++|-.++|||||+++++..  .   .   .      ++.+   ..|.........+.-...++.++||+|+.+|.
T Consensus         8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~   87 (691)
T PRK12739          8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT   87 (691)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence            578999999999999999999742  1   0   0      0000   11222222222222234678999999998887


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ......++.+|++++|.|.++.-.-+.. ..+..+.+.   ++| +++++|+
T Consensus        88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~~---~~p~iv~iNK~  135 (691)
T PRK12739         88 IEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADKY---GVPRIVFVNKM  135 (691)
T ss_pred             HHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHHc---CCCEEEEEECC
Confidence            7777788999999999999876443332 333334333   244 5555554

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.39  E-value=2e-06  Score=78.47  Aligned_cols=87  Identities=13%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Cccc---cceeeeEEEEEEECCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------RSLQ---MAGLNLINKTLMVQGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-------------------------~~~~---t~g~~~~~~~v~~~~~~  147 (215)
                      ...++|+++|..++|||||+.+++..  ...                         +..+   ..|.........++...
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            45789999999999999999999751  100                         1111   11333333334445556


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ..+.|.|++|+++|..........+|++++|.|.++.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G  121 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG  121 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence            7899999999999876666667899999999998864

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.37  E-value=2.3e-06  Score=70.37  Aligned_cols=80  Identities=23%  Similarity=0.200  Sum_probs=48.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc--------cc---h
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P  166 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~--~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~--------~~---~  166 (215)
                      ++|+|+|..|+||||++|.+++.... ...  ......+......++|  ..+.++||+|-.....        +.   .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999987654 221  1112223333446666  4578999999432211        11   1


Q ss_pred             hhccCCcEEEEEEeCC
Q 028037          167 IACKDAVAILFMFDLT  182 (215)
Q Consensus       167 ~~~~~a~~iilvfdit  182 (215)
                      ....+.+++|+|...+
T Consensus        79 ~~~~g~ha~llVi~~~   94 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG   94 (212)
T ss_dssp             HTTT-ESEEEEEEETT
T ss_pred             hccCCCeEEEEEEecC
Confidence            1245789999999988

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=8.4e-07  Score=72.46  Aligned_cols=104  Identities=18%  Similarity=0.189  Sum_probs=70.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc---CCcEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM  178 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~---~a~~iilv  178 (215)
                      .|+++|.+++|||+|..++.++.+..+.+.+..+..  ...++...  ..+.|.+|+++.+.-...|++   .+-+++||
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            589999999999999999999977765555444432  33333322  789999999998776666666   68899999


Q ss_pred             EeCC-ChhhHHHHHHHHHHHHhHC---CCCceEEE
Q 028037          179 FDLT-SRCTLNSIVGWYSEARKWN---QVTKQSLF  209 (215)
Q Consensus       179 fdit-~~~Sf~~i~~wl~~i~~~~---~~~~piIl  209 (215)
                      .|.. .......+.+++-++...+   ....|++|
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLI  150 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLI  150 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEE
Confidence            8755 3334445555544443332   34455544

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.36  E-value=1.4e-06  Score=82.74  Aligned_cols=87  Identities=11%  Similarity=0.145  Sum_probs=56.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc------------ccc-------------------ceeeeEEEEEEECC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------LQM-------------------AGLNLINKTLMVQG  145 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~------------~~t-------------------~g~~~~~~~v~~~~  145 (215)
                      ...++|+++|-.++|||||+++++...-. ..            .-+                   .|.........+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            34578999999999999999999854211 10            000                   01111111122223


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ...++.++||+|+++|..........+|++++|+|.++.
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g  140 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG  140 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence            345678999999988754444457899999999998764

>cd01856 YlqF YlqF

Probab=98.36  E-value=1e-06  Score=69.82  Aligned_cols=56  Identities=13%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      .++++++|.++||||||++++.+..+....+..+.......+.++   ..+.+|||+|-
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            479999999999999999999988775333333333434444443   35789999983

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.34  E-value=2e-06  Score=76.90  Aligned_cols=84  Identities=12%  Similarity=0.139  Sum_probs=56.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC-
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS-  161 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~-  161 (215)
                      ..+||.++|.++||||||++.+.+.... ..+|.+..+...-.+.+.+.               ..++++.|++|-.+- 
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            3579999999999999999999876655 44453333333333443322               245899999995431 


Q ss_pred             ---Cccchh---hccCCcEEEEEEeCC
Q 028037          162 ---FDHVPI---ACKDAVAILFMFDLT  182 (215)
Q Consensus       162 ---~~~~~~---~~~~a~~iilvfdit  182 (215)
                         ..+...   .++.+|++++|.|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence               122223   356899999999974

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.31  E-value=4e-06  Score=78.92  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=63.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Ccc-c-cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-------c---
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------H---  164 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~-~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-------~---  164 (215)
                      ..++|+++|.+||||||++|.+++.. |. ... + |+..  .......++  ..+.++||+|-.....       +   
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~  192 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSS  192 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHH
Confidence            36899999999999999999999875 43 221 2 2221  111223344  5689999999765321       1   


Q ss_pred             chhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 028037          165 VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ  202 (215)
Q Consensus       165 ~~~~~~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~  202 (215)
                      ...++.  +.|++|+|..++......+-..+++.|.+..+
T Consensus       193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG  232 (763)
T TIGR00993       193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG  232 (763)
T ss_pred             HHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhC
Confidence            111333  58999999988755443333467777766554

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.26  E-value=6.3e-06  Score=75.44  Aligned_cols=100  Identities=20%  Similarity=0.346  Sum_probs=73.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccC----Cc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKD----AV  173 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~----a~  173 (215)
                      .-.|+|+|+.++|||||+.+|.+.+  +..++.|.+|..-.+.-+  .....+.+|...|...+..+....+..    --
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            5689999999999999999986543  344577777765444332  234678999998877776666555442    24


Q ss_pred             EEEEEEeCCChhhHH-HHHHHHHHHHhHC
Q 028037          174 AILFMFDLTSRCTLN-SIVGWYSEARKWN  201 (215)
Q Consensus       174 ~iilvfdit~~~Sf~-~i~~wl~~i~~~~  201 (215)
                      .+|||.|++.+.++- .+..|+..++++.
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i  131 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLSVLREHI  131 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHHHHHHHH
Confidence            788999999997765 6788988887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK00007 elongation factor G; Reviewed

Probab=98.25  E-value=3.1e-06  Score=81.09  Aligned_cols=110  Identities=15%  Similarity=0.149  Sum_probs=68.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc--CCCC------------Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      -.+|.++|-.++|||||+++++.  +...            ++.   ...|.........+.-...++++.||+|+.+|.
T Consensus        10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~   89 (693)
T PRK00007         10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT   89 (693)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence            46999999999999999999973  2110            110   011222222222222234679999999998776


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ......+..+|++++|.|.+..-.-+...-|. .+.+..   +| +++|+|+
T Consensus        90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~~---~p~iv~vNK~  137 (693)
T PRK00007         90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKYK---VPRIAFVNKM  137 (693)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHcC---CCEEEEEECC
Confidence            55556678899999999988664444433333 344332   33 5556654

>cd01900 YchF YchF subfamily

Probab=98.22  E-value=4.5e-06  Score=71.40  Aligned_cols=80  Identities=13%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC----CC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR----SF  162 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~----~~  162 (215)
                      |.++|.++||||||++++.+.... ..++.+..+...-.+.+.+.               ...+++.|++|-.+    -.
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            468999999999999999988765 44443333333334444332               23599999999543    12


Q ss_pred             ccchhh---ccCCcEEEEEEeCC
Q 028037          163 DHVPIA---CKDAVAILFMFDLT  182 (215)
Q Consensus       163 ~~~~~~---~~~a~~iilvfdit  182 (215)
                      .+...+   .+.+|+++.|.|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            222333   46799999999864

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.21  E-value=1.6e-05  Score=70.69  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=79.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Cccchhh------cc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPIA------CK  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~~~~~------~~  170 (215)
                      -..|.++|-.++|||||+|.+.+.... +..-....+...+.+.+.+ ...+-+-||.|--+-  ..+...|      ..
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~  270 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK  270 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence            468999999999999999999976554 3333334455667777764 456788999995442  1222222      35


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+|.++.|.|.+|+.-.+.++.-.+-+.+..-.++|+|+|-
T Consensus       271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~  311 (411)
T COG2262         271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVL  311 (411)
T ss_pred             cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence            89999999999999888887766666666554568877653

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.19  E-value=4.7e-06  Score=80.38  Aligned_cols=111  Identities=14%  Similarity=0.128  Sum_probs=72.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc---cceeeeEEE----EEEECCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE------------RSLQ---MAGLNLINK----TLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~------------~~~~---t~g~~~~~~----~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      .-+|.++|..++|||||+.+++...-.            ++.+   ..|..+...    ....++....+++.||+|+.+
T Consensus        20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d   99 (731)
T PRK07560         20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD   99 (731)
T ss_pred             ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence            457999999999999999999742110            1111   001211111    122355678899999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      |.......++.+|++|+|.|....-.-+...-|.. +.+..  ..+|++|+|+
T Consensus       100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~~~--~~~iv~iNK~  149 (731)
T PRK07560        100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALRER--VKPVLFINKV  149 (731)
T ss_pred             hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHHcC--CCeEEEEECc
Confidence            87777778899999999999887644333334443 23322  2357777775

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.19  E-value=2.3e-05  Score=69.44  Aligned_cols=82  Identities=13%  Similarity=0.132  Sum_probs=54.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC---
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS---  161 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~---  161 (215)
                      ++|.++|-++||||||++++.+.... ..+|.+..+...-.+.+.+.               ..++++.|++|-.+-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            68999999999999999999987754 44443222222223343332               136899999995431   


Q ss_pred             -Cccchhh---ccCCcEEEEEEeCC
Q 028037          162 -FDHVPIA---CKDAVAILFMFDLT  182 (215)
Q Consensus       162 -~~~~~~~---~~~a~~iilvfdit  182 (215)
                       ..+...+   ++.+|++++|.|..
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             1222223   57899999999984

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.18  E-value=2.6e-05  Score=73.17  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=62.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhc--c
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC--K  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~--~  170 (215)
                      ..+|.++|.++||||||.|++.+.... .+.|.+..+-+.-.+...+.  ++++.|.+|--...      ...+.|+  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            567999999999999999999998877 77776555554445555554  48899999954332      2334443  3


Q ss_pred             CCcEEEEEEeCCChhh
Q 028037          171 DAVAILFMFDLTSRCT  186 (215)
Q Consensus       171 ~a~~iilvfdit~~~S  186 (215)
                      +.|+++-|.|-+|.+-
T Consensus        81 ~~D~ivnVvDAtnLeR   96 (653)
T COG0370          81 KPDLIVNVVDATNLER   96 (653)
T ss_pred             CCCEEEEEcccchHHH
Confidence            5699999999998654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.18  E-value=3.8e-06  Score=82.13  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=71.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC------------Cccc---cceeeeEE--EEEEE--------------CCeEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE------------RSLQ---MAGLNLIN--KTLMV--------------QGARI  148 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~------------~~~~---t~g~~~~~--~~v~~--------------~~~~~  148 (215)
                      --+|.++|-.++|||||+.+++...-.            ++.+   ..|..+..  ..+..              ++..+
T Consensus        19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (843)
T PLN00116         19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY   98 (843)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence            458999999999999999999853310            1111   11222221  11111              22367


Q ss_pred             EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      .+++.||+|+..|.......++.+|++|+|.|.++.-.-+...-|.. +..   .++| +++++|+
T Consensus        99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~---~~~p~i~~iNK~  160 (843)
T PLN00116         99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG---ERIRPVLTVNKM  160 (843)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH---CCCCEEEEEECC
Confidence            89999999999998777777899999999999997655444444433 322   2355 6666664

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=98.17  E-value=7e-06  Score=72.93  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=52.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee--eeEEEEEEECCeEEEEEEEecCCCCCCCccchhh-----cc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CK  170 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~-----~~  170 (215)
                      ..++|.|.|++|+|||||||.+.+-.-. +....+|.  ......-......-.+.+||.+|..-...-...|     +.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~  113 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKFY  113 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcccc
Confidence            4689999999999999999999764333 22223332  1111111112222358899999965433333333     45


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEE
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQVTKQSLFF  210 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl-~~i~~~~~~~~piIlV  210 (215)
                      .-|.||++.+    +.|....-|+ .++++.   +.|+.+|
T Consensus       114 ~yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfV  147 (376)
T PF05049_consen  114 RYDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFV  147 (376)
T ss_dssp             G-SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEE
T ss_pred             ccCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEE
Confidence            6788888765    3355554443 444443   3455544

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PTZ00416 elongation factor 2; Provisional

Probab=98.15  E-value=6.6e-06  Score=80.39  Aligned_cols=110  Identities=14%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC------------CCccc---cceeeeEE--EEEEEC--------CeEEEEEEEe
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ------------ERSLQ---MAGLNLIN--KTLMVQ--------GARIAFSIWD  154 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f------------~~~~~---t~g~~~~~--~~v~~~--------~~~~~l~i~D  154 (215)
                      .-+|.++|..++|||||+.+++...-            .++.+   ..|..+..  ..+..+        +....+++.|
T Consensus        19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD   98 (836)
T PTZ00416         19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID   98 (836)
T ss_pred             cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence            34899999999999999999985211            01100   11222211  112222        2367899999


Q ss_pred             cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      |+|+.+|.......++.+|++|+|.|.++.-.-+.-.-| ..+.+.   ++| +++++|+
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~---~~p~iv~iNK~  154 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE---RIRPVLFINKV  154 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc---CCCEEEEEECh
Confidence            999999877777778999999999998886443333333 334332   345 5666654

>cd01858 NGP_1 NGP-1

Probab=98.14  E-value=7.3e-06  Score=63.94  Aligned_cols=55  Identities=13%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ..+++++|.+|||||||++++.+.......++.|.......+..++   .+.+.||+|
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            4689999999999999999999876543223333222222223322   267899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.10  E-value=1.4e-05  Score=68.44  Aligned_cols=57  Identities=12%  Similarity=0.278  Sum_probs=40.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      ..++++++|.+|||||||++++.+..........|.+.....+.++.   .+.++||+|.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            36899999999999999999999876543223333333333444432   4789999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01882 BMS1 Bms1

Probab=98.08  E-value=3.2e-05  Score=64.20  Aligned_cols=102  Identities=15%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ...|+++|.+|+|||||++.+....-.. .....|. +   .+. .....++.+.||+|.-  ..+. ...+.+|+++++
T Consensus        39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~-~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv  110 (225)
T cd01882          39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVV-TGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL  110 (225)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEE-ecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence            5789999999999999999988642111 1111221 1   111 1245678899999853  2222 235789999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      .|.+.....+. ...+..+...   +.|  +++++|+
T Consensus       111 iDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~  143 (225)
T cd01882         111 IDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHL  143 (225)
T ss_pred             EecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEecc
Confidence            99876443322 2333334332   244  3366653

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.05  E-value=1.2e-05  Score=64.13  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=38.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      .++++++|.++||||||++++.+.......+..|.......+.++   -.+.++||+|
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            589999999999999999999987654222223333322333443   2478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.01  E-value=2e-05  Score=67.77  Aligned_cols=58  Identities=12%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ..++++++|.++||||||++++.+.......+..|.......+.+++   .+.++||+|--
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            45899999999999999999999876543233334333333444443   47899999974

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.00  E-value=5.9e-05  Score=65.22  Aligned_cols=110  Identities=13%  Similarity=0.136  Sum_probs=74.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cCCc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV  173 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~a~  173 (215)
                      .+=+||-+++|||||++.+...+-. ..++.+...-..-++.+++ ...+.+-|.+|--+    -+.+-..|+   ..++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            4568999999999999999876654 3333221222222444433 23389999998543    334444444   4689


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhHCC--CCceEEEEee
Q 028037          174 AILFMFDLTSR---CTLNSIVGWYSEARKWNQ--VTKQSLFFHI  212 (215)
Q Consensus       174 ~iilvfdit~~---~Sf~~i~~wl~~i~~~~~--~~~piIlVa~  212 (215)
                      ..++|.|++..   +-++.++....|+..+..  .+.|.++||.
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaN  320 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVAN  320 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEe
Confidence            99999999998   889999988888887764  4566555543

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.99  E-value=3.4e-05  Score=66.93  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=72.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEEC--CeEEEEEEEecCCCCCCCccchhhccC----Cc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKD----AV  173 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~--~~~~~l~i~Dt~G~e~~~~~~~~~~~~----a~  173 (215)
                      .-.|+++||.++|||||+.++-+.+  ......|.+|....+.-+  +...++.+|-..|.-....+....+..    -.
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet  129 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET  129 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence            5689999999999999999998776  334456777654444332  234778888888876655555444332    24


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC
Q 028037          174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ  202 (215)
Q Consensus       174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~  202 (215)
                      .+||+.|++++ .-++++++|..-++++.+
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehid  159 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHID  159 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence            67889999999 556788999988877653

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.99  E-value=2.1e-05  Score=77.92  Aligned_cols=90  Identities=12%  Similarity=0.084  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHhcCCCCCc-----cccceeeeEEEEEEECC-e----------EE-----EEEEEecCCCCCCCccchhhc
Q 028037          111 IGKTSFVVKYVGNEQERS-----LQMAGLNLINKTLMVQG-A----------RI-----AFSIWDVGGDSRSFDHVPIAC  169 (215)
Q Consensus       111 vGKTSLi~r~~~~~f~~~-----~~t~g~~~~~~~v~~~~-~----------~~-----~l~i~Dt~G~e~~~~~~~~~~  169 (215)
                      |+||||+..+.+....+.     .+.+|..    .+..+. .          ..     .+.+|||+|++.|..+....+
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~----~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~  547 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGAT----EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGG  547 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceE----EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhc
Confidence            459999999987665421     1223432    222221 0          11     289999999999988888888


Q ss_pred             cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+|++++|+|.++   +++++.+..+    +.   .++|+++|.
T Consensus       548 ~~aDivlLVVDa~~Gi~~qT~e~I~~l----k~---~~iPiIVVi  585 (1049)
T PRK14845        548 SLADLAVLVVDINEGFKPQTIEAINIL----RQ---YKTPFVVAA  585 (1049)
T ss_pred             ccCCEEEEEEECcccCCHhHHHHHHHH----HH---cCCCEEEEE
Confidence            99999999999997   6777766532    22   246765554

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.93  E-value=5.4e-05  Score=66.51  Aligned_cols=64  Identities=17%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----------ccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      -..+.|+++|++|.|||||++.+++.... +          ..+++.+......+.-+|..+.|++.||+|-..+
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~   95 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF   95 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence            34789999999999999999999976433 1          1233344555455555788899999999996654

>cd01855 YqeH YqeH

Probab=97.86  E-value=2.8e-05  Score=62.43  Aligned_cols=54  Identities=13%  Similarity=0.317  Sum_probs=35.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ..++++|.+|||||||++.+.+.....        .....|.......+.++.   .+.|+||+|
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            579999999999999999999754311        111113222233344432   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.0001  Score=65.71  Aligned_cols=116  Identities=11%  Similarity=0.134  Sum_probs=73.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------Ccc---ccceeeeEEEEEEECCe
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------RSL---QMAGLNLINKTLMVQGA  146 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-------------------------~~~---~t~g~~~~~~~v~~~~~  146 (215)
                      ....++++++|...+|||||+-|++.+  .+.                         +..   ...|..+......+.-.
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            345789999999999999999998742  111                         000   01144444444455555


Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH---H---HHHHHHHhHCCCCceEEEEeec
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI---V---GWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i---~---~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .+.++|.|++|+..|-.-.-.-...||+.|||.|..+.+ |+.-   .   +-.--+.+..+-+--||.|+||
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~tlGi~~lIVavNKM  155 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLARTLGIKQLIVAVNKM  155 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHhcCCceEEEEEEcc
Confidence            678999999998777655545567899999999998764 2211   1   1111122333345567777775

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.78  E-value=6.1e-05  Score=66.41  Aligned_cols=62  Identities=11%  Similarity=0.308  Sum_probs=45.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      ..|.++++|++|.|||||+|.++...+...          ..+..+......+.-+|..+.|++.||+|-..
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD   91 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD   91 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence            369999999999999999999887755421          11334444434444478899999999999543

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=97.75  E-value=0.00025  Score=63.79  Aligned_cols=109  Identities=13%  Similarity=0.180  Sum_probs=68.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC----CCC-C-----------------ccccceeee---EEEEEEE-CCeEEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN----EQE-R-----------------SLQMAGLNL---INKTLMV-QGARIAFSIW  153 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~----~f~-~-----------------~~~t~g~~~---~~~~v~~-~~~~~~l~i~  153 (215)
                      .+-|-++|+.++|||||+++|++.    ... +                 +..|+..-|   ....+.. ++...++.+.
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            578999999999999999999987    322 0                 112222222   2223332 5667889999


Q ss_pred             ecCCCCCCCc-------c----------------------chhhcc-CCcEEEEEE-eCC----ChhhHHHHH-HHHHHH
Q 028037          154 DVGGDSRSFD-------H----------------------VPIACK-DAVAILFMF-DLT----SRCTLNSIV-GWYSEA  197 (215)
Q Consensus       154 Dt~G~e~~~~-------~----------------------~~~~~~-~a~~iilvf-dit----~~~Sf~~i~-~wl~~i  197 (215)
                      ||+|-..-..       -                      ....+. .++..|+|. |-+    .++.+.... +|++++
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9998432100       0                      122234 788888887 654    345566654 788888


Q ss_pred             HhHCCCCceEEEEe
Q 028037          198 RKWNQVTKQSLFFH  211 (215)
Q Consensus       198 ~~~~~~~~piIlVa  211 (215)
                      ++.   ++|+|+|.
T Consensus       177 k~~---~kPfiivl  187 (492)
T TIGR02836       177 KEL---NKPFIILL  187 (492)
T ss_pred             Hhc---CCCEEEEE
Confidence            774   47766553

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.73  E-value=7.2e-05  Score=65.47  Aligned_cols=59  Identities=12%  Similarity=0.263  Sum_probs=43.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ....++.++|-++||||||||++.+..-....+..|.+-....+.++..   +.++||+|--
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            4457899999999999999999998876533333355544455555543   8899999953

>PRK13768 GTPase; Provisional

Probab=97.71  E-value=4e-05  Score=64.84  Aligned_cols=61  Identities=11%  Similarity=0.133  Sum_probs=35.6

Q ss_pred             EEEEEecCCCCCCC---ccchhhccC-----CcEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEE
Q 028037          149 AFSIWDVGGDSRSF---DHVPIACKD-----AVAILFMFDLTSRCTLNSIV--GWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~---~~~~~~~~~-----a~~iilvfdit~~~Sf~~i~--~wl~~i~~~~~~~~piIlV  210 (215)
                      .+.+||++|+.++.   .....+++.     ++++++++|.+...+.....  .|+....... .+.|+++|
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i~v  168 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQIPV  168 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence            68899999987743   333333332     89999999997654433332  3443333222 34565444

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=97.70  E-value=5.2e-05  Score=63.35  Aligned_cols=61  Identities=13%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC----------CccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~----------~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ..|+|+++|.+|.|||||++.+......          .+..|+.+...+..+.-++...++++.||+|-.
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfG  115 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFG  115 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcc
Confidence            3789999999999999999998754332          122245555555666668889999999999944

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.70  E-value=0.00042  Score=57.52  Aligned_cols=83  Identities=14%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC-C-c--cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-R-S--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPI  167 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~-~-~--~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~  167 (215)
                      -.=|.++|+.++|||+|+|++.+.  .|. . .  ..|.|+......+.. +....+.+.||.|-.....      ....
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence            345789999999999999999998  776 2 2  225565544332222 3457899999999764322      1122


Q ss_pred             hccC--CcEEEEEEeCCC
Q 028037          168 ACKD--AVAILFMFDLTS  183 (215)
Q Consensus       168 ~~~~--a~~iilvfdit~  183 (215)
                      .+..  ++++|+..+.+.
T Consensus        86 ~l~~llss~~i~n~~~~~  103 (224)
T cd01851          86 ALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHhCEEEEeccCcc
Confidence            2223  677776655443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>PRK12288 GTPase RsgA; Reviewed

Probab=97.61  E-value=7.4e-05  Score=66.08  Aligned_cols=58  Identities=12%  Similarity=0.104  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---cee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t---~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      -++|+|.+|||||||+|++.+..-.  ...+.   .|-  ......+.+++.   ..|.||+|-.++.
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence            4799999999999999999976433  12111   111  111223344322   2489999977654

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.58  E-value=7.3e-05  Score=59.03  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      --++++|.+|||||||+|.+....
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhc
Confidence            468999999999999999999763

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.57  E-value=0.00024  Score=55.26  Aligned_cols=53  Identities=13%  Similarity=0.281  Sum_probs=35.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ...++++|.++||||||++.+.+..- . ...+.+..+.  ..+..+   ..+.+.||+|
T Consensus       100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~---~~~~liDtPG  154 (155)
T cd01849         100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec---CCEEEEECCC
Confidence            57899999999999999999997653 2 2222111111  122332   3488999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00027  Score=67.67  Aligned_cols=112  Identities=12%  Similarity=0.095  Sum_probs=80.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--C------------CCCcc---ccceeeeEEEEEEECCe-EEEEEEEecCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN--E------------QERSL---QMAGLNLINKTLMVQGA-RIAFSIWDVGGDSR  160 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~--~------------f~~~~---~t~g~~~~~~~v~~~~~-~~~l~i~Dt~G~e~  160 (215)
                      ..-+|-++|--..|||||..+++..  .            +.+..   ..-|+.+.+..+.+.-. .+.+++.||+|+-+
T Consensus         9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD   88 (697)
T COG0480           9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD   88 (697)
T ss_pred             cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence            3568999999999999999998732  1            11111   12255555554444333 68999999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      |.......++-.|++++|+|...--..+.-.-|.+..+...   -++++||||
T Consensus        89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~v---p~i~fiNKm  138 (697)
T COG0480          89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGV---PRILFVNKM  138 (697)
T ss_pred             cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCC---CeEEEEECc
Confidence            99888888899999999999998766666666665543321   357777775

>PRK12289 GTPase RsgA; Reviewed

Probab=97.56  E-value=0.00015  Score=64.17  Aligned_cols=57  Identities=14%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccce-------eeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAG-------LNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g-------~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      -++|+|.+|||||||+|.++.+.-.......+       .......+.+++..   .+.||+|-..+
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~  237 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP  237 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence            47999999999999999999664331111111       11112333443222   58899996543

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.00031  Score=59.13  Aligned_cols=95  Identities=13%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             eEEEEcCCCC--CHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          102 KISLLGDCQI--GKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       102 KIvllGd~~v--GKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      -++++|.+||  ||.+|+.++...+|. +.......+++.+++........+++.=..-.+++..-.........+++++
T Consensus         6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmv   85 (418)
T KOG4273|consen    6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMV   85 (418)
T ss_pred             eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEE
Confidence            4689999999  999999999999998 4444444556655554332222222222222222222222223456799999


Q ss_pred             EeCCChhhHHHHHHHHHH
Q 028037          179 FDLTSRCTLNSIVGWYSE  196 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~  196 (215)
                      ||++....+..++.|+..
T Consensus        86 fdlse~s~l~alqdwl~h  103 (418)
T KOG4273|consen   86 FDLSEKSGLDALQDWLPH  103 (418)
T ss_pred             EeccchhhhHHHHhhccc
Confidence            999999999999999973

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00079  Score=63.37  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----------cc------cceeeeEEEEEEE-----CCeEEEEEEEec
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS----------LQ------MAGLNLINKTLMV-----QGARIAFSIWDV  155 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----------~~------t~g~~~~~~~v~~-----~~~~~~l~i~Dt  155 (215)
                      +....++.++|.-..|||+|+.-+.....++.          ..      ..|..+...-+.+     +++.+-+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            34467899999999999999998886533211          11      1133333322222     577899999999


Q ss_pred             CCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       156 ~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      +|+-.|..-....++-+|++++++|+.+--+++. ...+..+-   +.+.|+++|
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vv  255 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVV  255 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEE
Confidence            9999998888888999999999999998877654 33333322   345676555

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.46  E-value=0.00026  Score=59.62  Aligned_cols=58  Identities=16%  Similarity=0.148  Sum_probs=35.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC--cccc---ce--eeeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQER--SLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t---~g--~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      -.++++|.+|||||||++++.+..-..  ..+.   .|  .......+.+++.    .|+||+|-..+.
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence            478999999999999999999764321  1111   01  1111123333332    689999976653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.45  E-value=0.00084  Score=58.70  Aligned_cols=107  Identities=15%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cc-eeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MA-GLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KD  171 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~-g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~  171 (215)
                      -|=+||-+++|||||++.+..-+-. ..++ |+ -.+..  .+.+ ...-.+.+=|.+|--+    -..+-..|+   ..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG--vV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG--VVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc--EEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            3458999999999999999877655 3334 33 22332  3333 2334588899998543    223333343   46


Q ss_pred             CcEEEEEEeCCChh---hHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          172 AVAILFMFDLTSRC---TLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~---Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      +.+++.|.|++..+   -.++.+....|+.+|..  .+.|.+||+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~  282 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVL  282 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEE
Confidence            78999999999765   47777888888888764  345544444

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.44  E-value=0.00059  Score=60.16  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=34.6

Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +...+.++|++||.--+.-|..++.+++++|+|.++++.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeY  231 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEY  231 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhh
Confidence            347899999999988888888899999999999999864

>smart00053 DYNc Dynamin, GTPase

Probab=97.43  E-value=0.00091  Score=56.21  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .-.++++|+.|+||||+++.+.+..
T Consensus        26 ~p~i~vvG~~~~GKSt~l~~i~g~~   50 (240)
T smart00053       26 LPQIAVVGGQSAGKSSVLENFVGRD   50 (240)
T ss_pred             CCeEEEEcCCCccHHHHHHHHhCCC
Confidence            3479999999999999999999865

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.40  E-value=0.00072  Score=62.05  Aligned_cols=105  Identities=9%  Similarity=0.002  Sum_probs=73.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .=|.++|--.-|||||+-.+-...... ..-.+.-.+.-..+..+ +..-.+.+.||+|++.|..|+..-..-+|.++||
T Consensus         6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV   85 (509)
T COG0532           6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV   85 (509)
T ss_pred             CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence            357899999999999999998776652 11111112222344443 1335689999999999999998888889999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .|++|   +++.+.+.       .....++|+|+.+.
T Consensus        86 Va~dDGv~pQTiEAI~-------hak~a~vP~iVAiN  115 (509)
T COG0532          86 VAADDGVMPQTIEAIN-------HAKAAGVPIVVAIN  115 (509)
T ss_pred             EEccCCcchhHHHHHH-------HHHHCCCCEEEEEe
Confidence            99998   45554443       22235789877653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.40  E-value=0.0002  Score=61.59  Aligned_cols=59  Identities=14%  Similarity=0.139  Sum_probs=36.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--Ccccc---cee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t---~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      ..++++|.+|||||||++.+.+....  ...+.   .|.  ......+...+.   ..++||+|..++.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            57999999999999999999976543  11110   111  111223333322   2589999987754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK09866 hypothetical protein; Provisional

Probab=97.39  E-value=0.0012  Score=62.40  Aligned_cols=64  Identities=11%  Similarity=0.042  Sum_probs=39.5

Q ss_pred             EEEEEEecCCCCCCC-c----cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEeec
Q 028037          148 IAFSIWDVGGDSRSF-D----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHII  213 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~-~----~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~~  213 (215)
                      ..+.+.||+|-.... .    .....+.++|++++|.|.++.-+..+ ....+.+++.. .+.|++ ||+|+
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKI  299 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKF  299 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcc
Confidence            457788999986531 2    22346789999999999988544443 23344444433 234655 55654

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00098  Score=61.48  Aligned_cols=109  Identities=13%  Similarity=0.180  Sum_probs=74.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-C----------Ccc---ccceeeeEEEEEE---ECCeEEEEEEEecCCCCCCCcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ-E----------RSL---QMAGLNLINKTLM---VQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f-~----------~~~---~t~g~~~~~~~v~---~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      ++.++---.=|||||..|++...- .          +..   ..-|+.+..++..   .+|+.+.|++.||+|+-.|...
T Consensus        62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E  141 (650)
T KOG0462|consen   62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE  141 (650)
T ss_pred             ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence            455555566799999999974211 1          111   1225555444332   2578899999999999999887


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ...-+.-++|+||+.|.+.----+.+..++..+...   -.+|.+++|+
T Consensus       142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~---L~iIpVlNKI  187 (650)
T KOG0462|consen  142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG---LAIIPVLNKI  187 (650)
T ss_pred             ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC---CeEEEeeecc
Confidence            777778899999999998865555565555555432   3567777765

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.38  E-value=0.00041  Score=58.38  Aligned_cols=51  Identities=10%  Similarity=0.066  Sum_probs=42.2

Q ss_pred             CCCCccchhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQS-LFFHI  212 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~pi-IlVa~  212 (215)
                      ++|..+.+.+++++|++++|||+++++ ||+.+.+|+..+..   .++|+ |+++|
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK   76 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNK   76 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEC
Confidence            788899999999999999999999887 99999999987754   34554 44444

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00092 GTP-binding protein YchF

Probab=97.33  E-value=0.00087  Score=59.63  Aligned_cols=82  Identities=10%  Similarity=0.024  Sum_probs=55.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC---
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR---  160 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~---  160 (215)
                      +|+-++|.++||||||.+.+.+..- . .++|....+...-.+.+.+.               ...+++.|.+|--+   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 4 44442212222233444332               24688999998543   


Q ss_pred             -CCccc---hhhccCCcEEEEEEeCC
Q 028037          161 -SFDHV---PIACKDAVAILFMFDLT  182 (215)
Q Consensus       161 -~~~~~---~~~~~~a~~iilvfdit  182 (215)
                       -..+-   -...+.+|+++.|.|..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence             22222   23357899999999875

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.32  E-value=0.0011  Score=55.98  Aligned_cols=96  Identities=21%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC------CC-ccchhhccC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR------SF-DHVPIACKD  171 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~------~~-~~~~~~~~~  171 (215)
                      ..+|+++|-+.||||||+..+..-... ..+..+......-.+.++|.  .+++.|.+|.-+      -+ ...-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEeec
Confidence            468999999999999999999866554 33333333444455666664  578899987432      11 122234578


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHH
Q 028037          172 AVAILFMFDLTSRCTLNSI-VGWYSEA  197 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i-~~wl~~i  197 (215)
                      ||.++.|.|.+..+--..+ .+-++.+
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            9999999999987654433 3445544

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0011  Score=58.74  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=63.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEE------ECCeE-----------------------
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLM------VQGAR-----------------------  147 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~------~~~~~-----------------------  147 (215)
                      --|+++|.-..||||||+-+++++|+.    ..||+  ++......      ++|..                       
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf  136 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF  136 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence            458999999999999999999998872    12222  12111111      11111                       


Q ss_pred             ----------EEEEEEecCCCCC-----------CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          148 ----------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       148 ----------~~l~i~Dt~G~e~-----------~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                                -+++|.||+|.-.           |.....-|...+|.|+++||....+-=++.+.-+..++-+.
T Consensus       137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E  211 (532)
T KOG1954|consen  137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE  211 (532)
T ss_pred             HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence                      1789999998421           33445566788999999998776554445555566665443

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.30  E-value=0.00019  Score=60.18  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=30.7

Q ss_pred             EEEEEecCCCCCCCccchhhc--------cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          149 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~~~~~--------~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      .+-|+||+||.++...+....        ...-+++++.|..-   +.+|-+  .++-.+.-...-+.|.|.|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnv  162 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNV  162 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEE
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEe
Confidence            789999999999766655444        44567888888663   333433  3333322222235675554

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.21  E-value=0.0023  Score=58.20  Aligned_cols=110  Identities=15%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCc-------------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV  165 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~--~f~~~-------------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~  165 (215)
                      -+|.++---.=|||||+..++..  .|.+.             ....|+.+-.|...++...++++|.||+|+-.|-.-.
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            36777777788999999999854  23211             1122566666666666667899999999999998888


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ...++=.|+++++.|..+-. .-.-+.-+......  .-.||++|+|+
T Consensus        86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~--gL~PIVVvNKi  130 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL--GLKPIVVINKI  130 (603)
T ss_pred             hhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc--CCCcEEEEeCC
Confidence            77888899999999987631 11112222222222  34799999986

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.20  E-value=0.00021  Score=54.01  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      -|++++|..|+|||||.+.+.++..
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~   26 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDT   26 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchh
Confidence            3799999999999999999886643

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.18  E-value=0.00093  Score=59.37  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=35.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------C-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f------~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      .++.++|.+|||||||++++.....      . ...+  |.......+.+++   .+.++||+|-..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~p--gtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFP--GTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCC--CeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            3799999999999999999997432      1 1222  2111122333322   256999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.17  E-value=0.00058  Score=59.12  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      ..++++|.+|||||||++.+.+..-
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            4689999999999999999987543

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=97.17  E-value=0.0014  Score=58.02  Aligned_cols=83  Identities=17%  Similarity=0.109  Sum_probs=57.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEE----------C----CeEEEEEEEecCCC----
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMV----------Q----GARIAFSIWDVGGD----  158 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~----------~----~~~~~l~i~Dt~G~----  158 (215)
                      .+++-++|-++||||||.+.+....-. ..+|  |+..+...-.+..          .    -....+++.|.+|-    
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            478999999999999999999988755 5555  4443333222211          1    12467899999873    


Q ss_pred             CCCCccchhh---ccCCcEEEEEEeCC
Q 028037          159 SRSFDHVPIA---CKDAVAILFMFDLT  182 (215)
Q Consensus       159 e~~~~~~~~~---~~~a~~iilvfdit  182 (215)
                      .+=..+-..|   ++.+|+++-|.|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            3334444444   57899999999877

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.16  E-value=0.00076  Score=57.63  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCc-----cccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~-----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      -.|+|+.+|..|.|||||+..+.+-.|..+     .+++.....+..+.-.+..+++.|.||.|-
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf  105 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF  105 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence            479999999999999999999999888732     233344433334444678899999999983

>PRK13796 GTPase YqeH; Provisional

Probab=97.14  E-value=0.00082  Score=59.83  Aligned_cols=56  Identities=13%  Similarity=0.278  Sum_probs=34.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-C----ccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      .++.++|.+|||||||+|++...... .    ..+.-|.......+.+++.   ..++||+|-.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            47999999999999999999854311 1    1111122222233444332   3699999963

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.11  E-value=0.0015  Score=59.88  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=57.6

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCC---CCcc-c--c--ceeeeEEE--------EE---EEC-C----------
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQ---ERSL-Q--M--AGLNLINK--------TL---MVQ-G----------  145 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f---~~~~-~--t--~g~~~~~~--------~v---~~~-~----------  145 (215)
                      .....+.|.++|--..|||||+..+.+-.-   .+.. .  |  .|+.....        ..   ..+ +          
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            345678999999999999999999985322   2111 0  1  12221100        00   010 0          


Q ss_pred             -----eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          146 -----ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       146 -----~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                           ....+.+.|++|+++|-.....-...+|++++|.|.++.
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g  153 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES  153 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence                 023689999999998865544556789999999999874

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=97.06  E-value=0.0017  Score=56.86  Aligned_cols=85  Identities=14%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC---------------CeEEEEEEEecCCCCC--
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------------GARIAFSIWDVGGDSR--  160 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~---------------~~~~~l~i~Dt~G~e~--  160 (215)
                      .++|+=++|-++||||||.+.+.+.... ..+|...+|-..-.+.+.               .....|+++|++|--+  
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            4789999999999999999999988766 555533222222233331               2357899999997432  


Q ss_pred             --CCccchhh---ccCCcEEEEEEeCCC
Q 028037          161 --SFDHVPIA---CKDAVAILFMFDLTS  183 (215)
Q Consensus       161 --~~~~~~~~---~~~a~~iilvfdit~  183 (215)
                        -..+-..|   .+.+|+++-|.+..+
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence              23333333   577899887766543

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.04  E-value=0.00058  Score=58.90  Aligned_cols=59  Identities=17%  Similarity=0.165  Sum_probs=35.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc---ccee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---MAGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~---t~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      --.+++|.+|||||||+|++..+.-.  ...+   ..|-  ......+.+++..   .|.||+|-..+.
T Consensus       165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            36789999999999999999863221  1111   0111  1223344553222   367999977654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.0028  Score=58.66  Aligned_cols=103  Identities=10%  Similarity=0.070  Sum_probs=70.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .-=|-++|--.=|||||+..|.+.... ...-.+.-.+.--.+.+. ..-.+++.||+|+..|..|+..-..-+|.++||
T Consensus       153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV  231 (683)
T KOG1145|consen  153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLV  231 (683)
T ss_pred             CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence            345778999999999999999877665 221111111112234443 225688999999999999998888889999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          179 FDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       179 fdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      ....|   +++.+.|+       .....++|+|+.
T Consensus       232 VAadDGVmpQT~EaIk-------hAk~A~VpiVvA  259 (683)
T KOG1145|consen  232 VAADDGVMPQTLEAIK-------HAKSANVPIVVA  259 (683)
T ss_pred             EEccCCccHhHHHHHH-------HHHhcCCCEEEE
Confidence            98777   46655543       223357887753

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.96  E-value=0.0023  Score=64.97  Aligned_cols=106  Identities=13%  Similarity=0.024  Sum_probs=64.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc----cc--ceeeeEEEEEEECCeEEEEEEEecCCCC--------CCCccc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL----QM--AGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHV  165 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~----~t--~g~~~~~~~v~~~~~~~~l~i~Dt~G~e--------~~~~~~  165 (215)
                      -=.+|||++|+||||++.+- +-+|+ ...    .+  .+.+ ......+.+.   -.++||+|.-        .....|
T Consensus       112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W  186 (1169)
T TIGR03348       112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAW  186 (1169)
T ss_pred             CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecCC---EEEEcCCCccccCCCcccccHHHH
Confidence            34689999999999999987 45554 211    11  1111 1111222222   3378999932        122234


Q ss_pred             hhhc---------cCCcEEEEEEeCCChhh-----H----HHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PIAC---------KDAVAILFMFDLTSRCT-----L----NSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~~~---------~~a~~iilvfdit~~~S-----f----~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..++         +..||+|++.|+.+--+     .    ..+...++++.+..+-.+||-||-
T Consensus       187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~  250 (1169)
T TIGR03348       187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVL  250 (1169)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            3333         45899999999886421     1    345578888888777889987764

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.95  E-value=0.0013  Score=52.20  Aligned_cols=52  Identities=27%  Similarity=0.496  Sum_probs=30.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEec
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV  155 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt  155 (215)
                      ||++-|++|+|||||+.+++..--....+.-|  |++..+.-+|..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence            68999999999999999987432111122223  33334444555555555555

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=96.78  E-value=0.0073  Score=43.34  Aligned_cols=83  Identities=16%  Similarity=0.098  Sum_probs=51.8

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          103 ISLLG-DCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       103 IvllG-d~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      |.+.| .+|+|||++...+...--.     .|..  ...+..+.. +.+.+.|+++....  .....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~--vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKR--VLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCc--EEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            45666 6799999988766522111     1111  112222222 77889999886532  233566789999998875


Q ss_pred             CChhhHHHHHHHHHH
Q 028037          182 TSRCTLNSIVGWYSE  196 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~  196 (215)
                       +..++..+..+++.
T Consensus        72 -~~~s~~~~~~~~~~   85 (104)
T cd02042          72 -SPLDLDGLEKLLET   85 (104)
T ss_pred             -CHHHHHHHHHHHHH
Confidence             56678888877763

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.74  E-value=0.0039  Score=49.24  Aligned_cols=55  Identities=31%  Similarity=0.508  Sum_probs=40.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG  156 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~  156 (215)
                      ..||.+-|.+||||||++.++.+.=-.+.+ +.| -+++..+.-+|..+=|.|.|.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-kvg-Gf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY-KVG-GFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHHHhcCc-eee-eEEeeeeecCCeEeeeEEEEcc
Confidence            579999999999999999998743222111 222 3556677778888888888887

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.64  E-value=0.0075  Score=55.07  Aligned_cols=96  Identities=13%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             EEEcCCCCCHHHHHHHHhcCC--CC---------Cc---cccceeeeEEEEEEE-----CCeEEEEEEEecCCCCCCCcc
Q 028037          104 SLLGDCQIGKTSFVVKYVGNE--QE---------RS---LQMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       104 vllGd~~vGKTSLi~r~~~~~--f~---------~~---~~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      .++---.=|||||..|+++..  ..         +.   ....|+.+....+.+     +|+.+.|++.||+|+-.|..-
T Consensus        13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE   92 (603)
T COG0481          13 SIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE   92 (603)
T ss_pred             EEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE
Confidence            344444579999999997521  11         11   112245444443333     568899999999999998766


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK  199 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~  199 (215)
                      ....+..+.|.+|+.|.+.--.-+.+...|..+.+
T Consensus        93 VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~  127 (603)
T COG0481          93 VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN  127 (603)
T ss_pred             ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc
Confidence            65566788999999999987666667666666654

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.0053  Score=51.62  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEE--EEECCeEEEEEEEecCCCCCCCccc---hhhccCCcEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKT--LMVQGARIAFSIWDVGGDSRSFDHV---PIACKDAVAI  175 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~--v~~~~~~~~l~i~Dt~G~e~~~~~~---~~~~~~a~~i  175 (215)
                      -+|+++|-..+||||+-+--..+--+  ..|.-.+...+.  -.+.+.-+.+++||.+||-.+..-.   ...+++..+.
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsP--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSP--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCC--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            45999999999999986543322211  112222211111  1123456889999999998754322   3447889999


Q ss_pred             EEEEeCCCh
Q 028037          176 LFMFDLTSR  184 (215)
Q Consensus       176 ilvfdit~~  184 (215)
                      ++|.|..+.
T Consensus       106 ifvIDaQdd  114 (347)
T KOG3887|consen  106 IFVIDAQDD  114 (347)
T ss_pred             EEEEechHH
Confidence            999987664

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.56  E-value=0.012  Score=43.52  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -.+++.|++|+|||+|++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999988653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.56  E-value=0.016  Score=46.36  Aligned_cols=98  Identities=14%  Similarity=0.040  Sum_probs=53.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEe--cC-CCCCCCccchhhccCCcEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD--VG-GDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~D--t~-G~e~~~~~~~~~~~~a~~iil  177 (215)
                      -.+.++|+.|+|||||++-+.+-..    ++.|      .+.+++..+.+..-+  .+ |+.+--.+......+.+.+++
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL   95 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF   95 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4788999999999999998886532    2223      122333322221111  22 333333455566667776665


Q ss_pred             E--EeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          178 M--FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       178 v--fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      =  ++--|..+-+.+.+|+.++.+.  .+..+|++
T Consensus        96 DEPts~LD~~~~~~l~~~l~~~~~~--~~~tiiiv  128 (177)
T cd03222          96 DEPSAYLDIEQRLNAARAIRRLSEE--GKKTALVV  128 (177)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEE
Confidence            2  2233556666666777766442  22445544

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=96.49  E-value=0.0023  Score=47.07  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .|+|.|.+||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999864

...

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=96.48  E-value=0.0037  Score=56.42  Aligned_cols=84  Identities=11%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--C--------------CCC-----CccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG--N--------------EQE-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~--~--------------~f~-----~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      -...+|--+.+|||||..+++-  +              .+.     +-...-|+.+.+-...++...+.++|.||+|++
T Consensus        13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHe   92 (528)
T COG4108          13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHE   92 (528)
T ss_pred             cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcc
Confidence            3567888899999999998862  1              111     011123677767777777778899999999999


Q ss_pred             CCCccchhhccCCcEEEEEEeCCCh
Q 028037          160 RSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       160 ~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      .|..=....+..+|..+.|.|...-
T Consensus        93 DFSEDTYRtLtAvDsAvMVIDaAKG  117 (528)
T COG4108          93 DFSEDTYRTLTAVDSAVMVIDAAKG  117 (528)
T ss_pred             ccchhHHHHHHhhheeeEEEecccC
Confidence            9987666667789999999998763

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=96.42  E-value=0.0045  Score=56.74  Aligned_cols=112  Identities=18%  Similarity=0.248  Sum_probs=66.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC--Ccc--chh-----hc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDH--VPI-----AC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--~~~--~~~-----~~  169 (215)
                      .-.++++|-++||||||++........ ..++.+.-.++.-  .++..-...++.||+|--.-  ...  +..     ..
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA  245 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA  245 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence            346899999999999999988877666 4444222222211  12334467888999995431  111  111     11


Q ss_pred             cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          170 KDAVAILFMFDLTSRCTL--NSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf--~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .--.+++++-|++..+-+  ..=...+..|+-.-..+.-|++++|+
T Consensus       246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~  291 (620)
T KOG1490|consen  246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKI  291 (620)
T ss_pred             HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecc
Confidence            122567888899976544  33346788887665444556666653

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=96.39  E-value=0.015  Score=44.35  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=59.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037          104 SLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  183 (215)
Q Consensus       104 vllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~  183 (215)
                      +.-|.+|+|||++...+...--.......-.|..   .......+.+.++|+++..  .......+..+|.++++.+.+ 
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D---~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDAD---LGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC---CCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            4567899999998776653211111111111110   0001122778999998743  333346688999999998765 


Q ss_pred             hhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          184 RCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       184 ~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ..++..+...++++.+........++++.+
T Consensus        78 ~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~  107 (139)
T cd02038          78 PTSITDAYALIKKLAKQLRVLNFRVVVNRA  107 (139)
T ss_pred             hhHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            556666666666665544333445666653

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK08118 topology modulation protein; Reviewed

Probab=96.39  E-value=0.0029  Score=50.07  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -||+|+|.+|+|||||..++...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999988753

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.043  Score=51.13  Aligned_cols=115  Identities=11%  Similarity=0.122  Sum_probs=74.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--------------------CCC-C---------ccccceeeeEEEEEEECCe
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN--------------------EQE-R---------SLQMAGLNLINKTLMVQGA  146 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~--------------------~f~-~---------~~~t~g~~~~~~~v~~~~~  146 (215)
                      +...+.++++|.-.+|||||+-+++..                    .+. .         ...-.|+....+...++-.
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            346789999999999999999988641                    111 0         0111244444555566666


Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH-------HHHHHHHHhHCCCCceEEEEeec
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-------VGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i-------~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ...+.|.|.+|+..|..-.-.-...||+.+||.|.+-- .|+.=       ++.. .+.+.-+-+--||.++||
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha-~llr~Lgi~qlivaiNKm  325 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHA-LLLRSLGISQLIVAINKM  325 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHH-HHHHHcCcceEEEEeecc
Confidence            78899999999888876555556789999999997642 34431       1222 222333345556667665

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.35  E-value=0.037  Score=38.12  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc-chhhccCCcEEEEEEeC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL  181 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~-~~~~~~~a~~iilvfdi  181 (215)
                      +++.|..|+|||++...+...--.     .|.    +...++    .+.+.|+++.-..... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~----~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAK-----RGK----RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH-----CCC----eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999877633111     111    122233    6888999876543321 13455678888888875


Q ss_pred             CChhhHHHHHHHHHHH
Q 028037          182 TSRCTLNSIVGWYSEA  197 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i  197 (215)
                      .. .+........++.
T Consensus        69 ~~-~~~~~~~~~~~~~   83 (99)
T cd01983          69 EA-LAVLGARRLTEVV   83 (99)
T ss_pred             ch-hhHHHHHHHHHHH
Confidence            54 3455555443333

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.28  E-value=0.0035  Score=47.42  Aligned_cols=19  Identities=26%  Similarity=0.364  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      |+++|.+|+|||||+.++.
T Consensus         2 ii~~G~pgsGKSt~a~~l~   20 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLA   20 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6899999999999999988

...

>PRK07261 topology modulation protein; Provisional

Probab=96.25  E-value=0.0038  Score=49.52  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ||+++|.+|+|||||...+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            799999999999999998764

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.21  E-value=0.035  Score=49.07  Aligned_cols=84  Identities=13%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--C-c----------cccc-------------------eeeeEEEEEEECC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--R-S----------LQMA-------------------GLNLINKTLMVQG  145 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~-~----------~~t~-------------------g~~~~~~~v~~~~  145 (215)
                      ...++++-+|.-.=||||||-|++.+.-.  + .          ..+.                   |+.+..-...+.-
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            34689999999999999999999864221  0 0          0011                   2221112222233


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      .+-+|-|-||+|+|+|..-.-.-...+|+.|++.|.
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA  119 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA  119 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEec
Confidence            445789999999999865554555678888888886

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.14  E-value=0.0046  Score=49.63  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .||+++|++|+||||+..++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.018  Score=55.16  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=79.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC------------CCC---CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN------------EQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~------------~f~---~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      .-+++++---.=|||||+..++..            +|.   +...+.|+...+-.+..-.+.+.+++.|++|+-.|...
T Consensus         9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se   88 (887)
T KOG0467|consen    9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE   88 (887)
T ss_pred             eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence            346777777788999999988742            222   23345677766666666667899999999999999998


Q ss_pred             chhhccCCcEEEEEEeCCCh---hhHHHHH-HHHHHHHhHCCCCceEEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSR---CTLNSIV-GWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~---~Sf~~i~-~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .....+-+|++++..|+..-   ++..-+. .|.+       .-.|+++++|+
T Consensus        89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinki  134 (887)
T KOG0467|consen   89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKI  134 (887)
T ss_pred             hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehh
Confidence            88888999999999998864   3333332 3543       34789999886

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.08  E-value=0.0037  Score=48.79  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ||+|.|.+++|||||++.+...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999998754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.07  E-value=0.01  Score=50.83  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=21.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ....-|+++|-.|+|||||++|+..
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~   41 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNS   41 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHH
Confidence            3467899999999999999999964

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=96.04  E-value=0.027  Score=47.96  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  183 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~  183 (215)
                      .++++++|++||..-+.-|-+++.+..++|+|...++
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs  237 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS  237 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence            4679999999999999999999999999999988764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.97  E-value=0.0073  Score=44.10  Aligned_cols=26  Identities=19%  Similarity=0.146  Sum_probs=22.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE  126 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~  126 (215)
                      -.++++|++|+|||+++..+...-..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC
Confidence            46899999999999999999866544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=95.94  E-value=0.0068  Score=44.80  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998844

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.89  E-value=0.0064  Score=46.01  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|+++|++|+|||+|++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            379999999999999998873

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=95.88  E-value=0.011  Score=54.19  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      .+.|=+||=++|||||+||.+++.+-..-..|-|-.=.-.++.+..   .+.+.|++|-
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            4788999999999999999999998876556666554444555542   4678999983

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=95.88  E-value=0.02  Score=43.77  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=95.84  E-value=0.015  Score=54.23  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=49.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+-+.++|++|+||||||..++.. |..  .|+. ++......+.|+.-.+++.+++  .....+.. ..+-||.++|.
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr-~tk--~ti~-~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRR-FTK--QTID-EIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHH-HHH--hhhh-ccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEE
Confidence            3578889999999999999988743 221  1111 1111222346778889999887  33333332 23568888888


Q ss_pred             EeCCC
Q 028037          179 FDLTS  183 (215)
Q Consensus       179 fdit~  183 (215)
                      .|-+-
T Consensus       141 Idgnf  145 (1077)
T COG5192         141 IDGNF  145 (1077)
T ss_pred             ecccc
Confidence            88664

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.82  E-value=0.052  Score=47.83  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+-|-+.|.+|+|||||+..+.
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~   77 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALG   77 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999764

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=95.76  E-value=0.05  Score=39.59  Aligned_cols=98  Identities=11%  Similarity=0.082  Sum_probs=57.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC
Q 028037          105 LLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS  183 (215)
Q Consensus       105 llGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~  183 (215)
                      +=+.+|+|||++...+...--.. .......|..     ... ...+.|.|+++....  .....+..+|.++++.+ .+
T Consensus         5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~-~~   75 (106)
T cd03111           5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQ-QD   75 (106)
T ss_pred             ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEec-CC
Confidence            34678999999877765321111 2222222211     111 117889999986533  23345678899998886 45


Q ss_pred             hhhHHHHHHHHHHHHhHCCC--CceEEEEe
Q 028037          184 RCTLNSIVGWYSEARKWNQV--TKQSLFFH  211 (215)
Q Consensus       184 ~~Sf~~i~~wl~~i~~~~~~--~~piIlVa  211 (215)
                      ..|+..+..+++.+++...+  ....+|++
T Consensus        76 ~~s~~~~~~~~~~l~~~~~~~~~~~~lVvN  105 (106)
T cd03111          76 LPSIRNAKRLLELLRVLDYSLPAKIELVLN  105 (106)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCcCceEEEec
Confidence            56788888888887765532  33344443

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=95.71  E-value=0.0083  Score=44.53  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+++.|++|+|||++++++...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHH
Confidence            4789999999999999999865

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=95.71  E-value=0.0079  Score=47.23  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=16.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .--+++.|++|+|||+|++++..
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998763

>PRK06217 hypothetical protein; Validated

Probab=95.66  E-value=0.01  Score=47.42  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .||+|+|.+|+|||||..++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.64  E-value=0.011  Score=45.25  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.62  E-value=0.011  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .++|+|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.60  E-value=0.013  Score=39.37  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |.+.|.+|+|||++.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988844

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF05729 NACHT: NACHT domain

Probab=95.59  E-value=0.01  Score=45.50  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++|.|++|+|||+++.+++..
T Consensus         3 l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            689999999999999998854

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.59  E-value=0.011  Score=44.38  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++.+.+.
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEEccCCCccccceeeeccc
Confidence            6899999999999999987755

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.57  E-value=0.015  Score=38.58  Aligned_cols=20  Identities=15%  Similarity=0.160  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.++.|+.|+|||||+..+.
T Consensus        25 ~tli~G~nGsGKSTllDAi~   44 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQ   44 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38999999999999998775

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.56  E-value=0.012  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE  126 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~  126 (215)
                      .++++|++|+|||||+..+..-+-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~~   54 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEEP   54 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcCC
Confidence            6899999999999999998865543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=95.54  E-value=0.011  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++++|++|+|||||++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999987653

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=0.13  Score=47.09  Aligned_cols=102  Identities=14%  Similarity=0.263  Sum_probs=59.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc----c--cce----------------eeeEEEEEEEC------------
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSL----Q--MAG----------------LNLINKTLMVQ------------  144 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~----~--t~g----------------~~~~~~~v~~~------------  144 (215)
                      .-+|+++|+.|||||||+.-+++.--+ +..    .  .+|                .+|-...+++.            
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG  692 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG  692 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence            458999999999999999988753211 000    0  000                01111111111            


Q ss_pred             --CeEEEEEEEecCCCCCCC-ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 028037          145 --GARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ  202 (215)
Q Consensus       145 --~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~  202 (215)
                        ...-.+.|-|..|....+ .+....+...|++|+ =..||--..++|...-+.|+.+.+
T Consensus       693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL-DEPTNNLDIESIDALaEAIney~G  752 (807)
T KOG0066|consen  693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL-DEPTNNLDIESIDALAEAINEYNG  752 (807)
T ss_pred             hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe-cCCCCCcchhhHHHHHHHHHhccC
Confidence              112367888988776655 344556677777665 344554456667777777777763

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.50  E-value=0.024  Score=47.02  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      =..++|++|+|||||+..|..
T Consensus        35 VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHHh
Confidence            357999999999999998863

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=95.49  E-value=0.012  Score=43.29  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+|.|.+||||||+++.+...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

...

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.49  E-value=0.021  Score=46.57  Aligned_cols=25  Identities=16%  Similarity=0.327  Sum_probs=21.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...-|+|+|++|+|||||++.+...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3567889999999999999999754

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.46  E-value=0.013  Score=46.21  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .|+++|++|+|||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.45  E-value=0.023  Score=50.36  Aligned_cols=23  Identities=39%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      +.++|++||||||+++.+.+=+.
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999886544

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.44  E-value=0.013  Score=47.22  Aligned_cols=23  Identities=9%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .=|+|+|++|+|||||+++++..
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            34899999999999999999865

>PF13173 AAA_14: AAA domain

Probab=95.44  E-value=0.012  Score=44.15  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      -+++.|+.+||||+|+.++.....
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999999986543

>TIGR00101 ureG urease accessory protein UreG

Probab=95.38  E-value=0.015  Score=47.36  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++|.++|+.|+|||||++++.+.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988753

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=95.37  E-value=0.0094  Score=53.50  Aligned_cols=82  Identities=12%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT  182 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit  182 (215)
                      |.++|..|+|||||+.-+.+-    +.|..|      .+.+||+.+     |-..-|+|+.+....+.+-+.|==.+...
T Consensus       352 vFliG~NGsGKST~~~LLtGL----~~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e  416 (546)
T COG4615         352 VFLIGGNGSGKSTLAMLLTGL----YQPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE  416 (546)
T ss_pred             EEEECCCCCcHHHHHHHHhcc----cCCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence            688999999999999887755    334444      344566553     33334567777766666655544445555


Q ss_pred             ChhhHHHHHHHHHHHHh
Q 028037          183 SRCTLNSIVGWYSEARK  199 (215)
Q Consensus       183 ~~~Sf~~i~~wl~~i~~  199 (215)
                      ...|-+.+..|++.+.-
T Consensus       417 ~~as~q~i~~~LqrLel  433 (546)
T COG4615         417 GKASPQLIEKWLQRLEL  433 (546)
T ss_pred             cCCChHHHHHHHHHHHH
Confidence            55788899999998853

>PRK10646 ADP-binding protein; Provisional

Probab=95.33  E-value=0.053  Score=42.48  Aligned_cols=22  Identities=36%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|++-||-|+|||||++-+...
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~   51 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQA   51 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998754

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=0.12  Score=49.23  Aligned_cols=101  Identities=12%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccccc----------eeee-----------------------------
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMA----------GLNL-----------------------------  136 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~----------g~~~-----------------------------  136 (215)
                      ....||++.|+.+.||||+++.++..+.-  +-.+++          |.+-                             
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            34679999999999999999999764432  111111          0000                             


Q ss_pred             ---EEEEEEECCeE-----EEEEEEecCCCC---CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037          137 ---INKTLMVQGAR-----IAFSIWDVGGDS---RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK  199 (215)
Q Consensus       137 ---~~~~v~~~~~~-----~~l~i~Dt~G~e---~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~  199 (215)
                         .--.+..+...     =.+.+.|.+|-+   ....-...++.++|++|+|-+--|..+..+ +.++....+
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~  259 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE  259 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc
Confidence               00011111111     145677778754   345566778899999999977666544333 344444433

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.30  E-value=0.015  Score=48.85  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =|.++|++|||||||++-..+-
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988754

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=95.30  E-value=0.048  Score=47.79  Aligned_cols=97  Identities=12%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC--ccchh------hccC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVPI------ACKD  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~--~~~~~------~~~~  171 (215)
                      --|.++|-.++|||||++++..-... +..-.-..|...+....... -.+-+-||.|--.--  .+...      ....
T Consensus       179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATLeeVae  257 (410)
T KOG0410|consen  179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATLEEVAE  257 (410)
T ss_pred             ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence            46889999999999999999854433 22111122222233333222 235678999843211  11111      2357


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEAR  198 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~  198 (215)
                      +|.++-|.|+++++-=+....-+.-++
T Consensus       258 adlllHvvDiShP~ae~q~e~Vl~vL~  284 (410)
T KOG0410|consen  258 ADLLLHVVDISHPNAEEQRETVLHVLN  284 (410)
T ss_pred             cceEEEEeecCCccHHHHHHHHHHHHH
Confidence            899999999999865444444444443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.24  E-value=0.014  Score=48.62  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+-.-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5889999999999999987643

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=95.22  E-value=0.042  Score=52.75  Aligned_cols=95  Identities=19%  Similarity=0.193  Sum_probs=66.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-C----ccccceeeeEEEE--------EEECCe----EEEEEEEecCCC
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-R----SLQMAGLNLINKT--------LMVQGA----RIAFSIWDVGGD  158 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~----~~~t~g~~~~~~~--------v~~~~~----~~~l~i~Dt~G~  158 (215)
                      .+.+.-=|+++|--..|||-|+..+.+.... .    -...+|.+|....        +.-+++    ---+.+.||+|+
T Consensus       471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh  550 (1064)
T KOG1144|consen  471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH  550 (1064)
T ss_pred             hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence            3566677999999999999999998875443 1    1224455554321        101111    113678899999


Q ss_pred             CCCCccchhhccCCcEEEEEEeCCC---hhhHHHH
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTS---RCTLNSI  190 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~---~~Sf~~i  190 (215)
                      |.|..++.....-+|.+|+|.||..   +++.+++
T Consensus       551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi  585 (1064)
T KOG1144|consen  551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI  585 (1064)
T ss_pred             hhhhhhhhccccccceEEEEeehhccCCcchhHHH
Confidence            9999999999999999999999985   4444443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=95.17  E-value=0.019  Score=42.32  Aligned_cols=21  Identities=29%  Similarity=0.608  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.++++|++|+|||||+..+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999999977

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14530 adenylate kinase; Provisional

Probab=95.16  E-value=0.018  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+|+|+|.+|+||||+...+.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La   24 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLA   24 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999886

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.13  E-value=0.03  Score=51.96  Aligned_cols=23  Identities=22%  Similarity=0.491  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =++.++|++|+|||||++-+.+-
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~  384 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGL  384 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            38899999999999999988754

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=95.12  E-value=0.018  Score=50.78  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~  124 (215)
                      ++++|++|||||||++-+.+-+
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999987643

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.11  E-value=0.027  Score=42.51  Aligned_cols=22  Identities=41%  Similarity=0.456  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|++-||-|+|||||++.+...
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999988753

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=95.11  E-value=0.1  Score=47.58  Aligned_cols=22  Identities=27%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..-|+++|.+||||||++.++.
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA  121 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLA  121 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999885

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=95.09  E-value=0.018  Score=44.26  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|.++|..++|||||+..+++
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~   22 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLIN   22 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999874

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=95.08  E-value=0.02  Score=48.16  Aligned_cols=24  Identities=17%  Similarity=0.422  Sum_probs=21.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .++++++|.+|+|||+|+..++..
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            589999999999999999988754

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK00300 gmk guanylate kinase; Provisional

Probab=95.08  E-value=0.019  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      --|+++|++|+|||||+..+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999988754

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=95.08  E-value=0.016  Score=47.54  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|++|+|||||+|-..+
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhc
Confidence            589999999999999997654

>PRK08233 hypothetical protein; Provisional

Probab=95.04  E-value=0.024  Score=44.57  Aligned_cols=22  Identities=18%  Similarity=0.158  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|.+.|.+|+|||||..++..
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~   25 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTH   25 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5677889999999999999874

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.04  E-value=0.021  Score=46.11  Aligned_cols=24  Identities=29%  Similarity=0.513  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .=+++.|++|||||||++.+....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457899999999999999998765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.01  E-value=0.021  Score=45.11  Aligned_cols=20  Identities=30%  Similarity=0.270  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      .|+++|.+|+||||++..+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999887

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK03839 putative kinase; Provisional

Probab=95.00  E-value=0.022  Score=45.14  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      +|+++|.+|+||||+..++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>PRK13695 putative NTPase; Provisional

Probab=95.00  E-value=0.022  Score=44.95  Aligned_cols=22  Identities=36%  Similarity=0.600  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +||.+.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998653

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=94.97  E-value=0.097  Score=45.20  Aligned_cols=74  Identities=15%  Similarity=0.083  Sum_probs=44.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc--CCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~--~a~~iilvf  179 (215)
                      .|++.|.+|+||||+++.+-...+.               .+++..  ..+        +..+......  ..+.+.++.
T Consensus         8 ~i~i~G~~GsGKtt~~~~l~~~g~~---------------~~d~~~--~~L--------~~~l~~~~~~~~~~~~~av~i   62 (288)
T PRK05416          8 LVIVTGLSGAGKSVALRALEDLGYY---------------CVDNLP--PSL--------LPKLVELLAQSGGIRKVAVVI   62 (288)
T ss_pred             EEEEECCCCCcHHHHHHHHHHcCCe---------------EECCcC--HHH--------HHHHHHHHHhcCCCCCeEEEE
Confidence            6899999999999999998532221               112211  111        1122111111  135577788


Q ss_pred             eCCChhhHHHHHHHHHHHHhH
Q 028037          180 DLTSRCTLNSIVGWYSEARKW  200 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~  200 (215)
                      |+.+.+.++....++..+++.
T Consensus        63 D~r~~~~~~~~~~~~~~L~~~   83 (288)
T PRK05416         63 DVRSRPFFDDLPEALDELRER   83 (288)
T ss_pred             ccCchhhHHHHHHHHHHHHHc
Confidence            998877556677777777764

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=94.92  E-value=0.067  Score=41.65  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =|++-||=|+|||||.+-+..+
T Consensus        27 Vv~L~GdLGAGKTtf~rgi~~~   48 (149)
T COG0802          27 VVLLSGDLGAGKTTLVRGIAKG   48 (149)
T ss_pred             EEEEEcCCcCChHHHHHHHHHH
Confidence            4788999999999999988744

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.89  E-value=0.023  Score=45.75  Aligned_cols=20  Identities=25%  Similarity=0.416  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |.+.|++|+|||||++.+.+
T Consensus         2 igi~G~~GsGKSTl~~~l~~   21 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIE   21 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67999999999999998865

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=94.87  E-value=0.021  Score=46.14  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      --++|.|+.|+|||||++.+....
T Consensus        21 ~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   21 QHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             cEEEEEcCCcCCHHHHHHHHHHHh
Confidence            457888999999999999998654

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK14532 adenylate kinase; Provisional

Probab=94.86  E-value=0.025  Score=45.07  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+++|.+|+||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998874

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=94.79  E-value=0.12  Score=44.01  Aligned_cols=85  Identities=11%  Similarity=0.063  Sum_probs=44.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~--~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      -+++.|..|+||||+++.++..-....  .-++. |.  ..+.+.+ ...+++..-. ...|.......++..--+|++-
T Consensus        82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~-~~q~~v~~~~-~~~~~~~l~~~lR~~PD~i~vg  156 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPG-INQVQVNEKA-GLTFARGLRAILRQDPDIIMVG  156 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCC-ceEEEeCCcC-CcCHHHHHHHHhccCCCEEEec
Confidence            489999999999999998875432211  01111 10  0111222 1223322111 1234444555555444455677


Q ss_pred             eCCChhhHHHHH
Q 028037          180 DLTSRCTLNSIV  191 (215)
Q Consensus       180 dit~~~Sf~~i~  191 (215)
                      .+.+.+++..+.
T Consensus       157 EiR~~e~a~~~~  168 (264)
T cd01129         157 EIRDAETAEIAV  168 (264)
T ss_pred             cCCCHHHHHHHH
Confidence            888888766543

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=94.79  E-value=0.025  Score=45.04  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      +|+++|.+|+||||+...+...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=94.77  E-value=0.13  Score=46.11  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhHC-CCCceEEEE
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----------TLNSIVGWYSEARKWN-QVTKQSLFF  210 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~----------Sf~~i~~wl~~i~~~~-~~~~piIlV  210 (215)
                      ....+.++|++||...+.-|..++.+.+++|+|.|+++-+          .+.+.-..++++-... =.+.|+||+
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~  309 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF  309 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence            3467899999999988899999999999999999987432          2433344455543322 146776664

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PRK01889 GTPase RsgA; Reviewed

Probab=94.75  E-value=0.032  Score=49.58  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -+++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            479999999999999999998643

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=94.74  E-value=0.13  Score=44.27  Aligned_cols=72  Identities=13%  Similarity=0.094  Sum_probs=45.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-cceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV  165 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~  165 (215)
                      .....++++|-++||||||++.++...-. .... +.|..-....+.++   -.+.+.|.+|          .+++..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence            44678999999999999999999877655 3332 44433222233333   3456678888          22344566


Q ss_pred             hhhccCC
Q 028037          166 PIACKDA  172 (215)
Q Consensus       166 ~~~~~~a  172 (215)
                      ..|+.+-
T Consensus       211 ~~Y~leR  217 (320)
T KOG2486|consen  211 KSYLLER  217 (320)
T ss_pred             HHHHHhh
Confidence            6666443

>PRK13949 shikimate kinase; Provisional

Probab=94.72  E-value=0.029  Score=44.42  Aligned_cols=21  Identities=29%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+++|.+|+||||+...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999997763

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=94.72  E-value=0.027  Score=47.16  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+++|++|+|||||++.+.+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999998875

>PRK14531 adenylate kinase; Provisional

Probab=94.70  E-value=0.029  Score=44.73  Aligned_cols=23  Identities=17%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+|+++|.+|+||||+..++..
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998854

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.68  E-value=0.03  Score=44.74  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.+.++|++|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>smart00072 GuKc Guanylate kinase homologues

Probab=94.67  E-value=0.03  Score=44.70  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =|+++|++||||+|++.+++..
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~   25 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQE   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            3899999999999999999877

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK02496 adk adenylate kinase; Provisional

Probab=94.65  E-value=0.032  Score=44.35  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++++|.+|+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=94.65  E-value=0.024  Score=44.04  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+++|.+|+||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999987643

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR00235 udk uridine kinase

Probab=94.64  E-value=0.04  Score=44.81  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|.+.|.+|+|||||++.+.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHH
Confidence            46688999999999999998874

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=94.62  E-value=0.03  Score=44.60  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      ++|+|++|+|||+|.++++.
T Consensus         5 ivl~Gpsg~GK~~l~~~L~~   24 (183)
T PF00625_consen    5 IVLVGPSGSGKSTLAKRLIQ   24 (183)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999985

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=94.61  E-value=0.033  Score=45.44  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            6899999999999999999865

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=94.59  E-value=0.029  Score=47.07  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+++.|++|+|||+|++.+...
T Consensus        45 ~~~l~G~~G~GKTtl~~~l~~~   66 (269)
T TIGR03015        45 FILITGEVGAGKTTLIRNLLKR   66 (269)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHh
Confidence            5889999999999999999754

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=94.59  E-value=0.03  Score=44.73  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-+.++|.+|+|||||+.+++.
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHH
Confidence            3578999999999999999884

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=94.59  E-value=0.07  Score=46.76  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.|+|++|+|||||++.+.+-.
T Consensus        35 ~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         35 IRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            58899999999999999998654

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=94.58  E-value=0.077  Score=44.50  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+..
T Consensus        31 ~~~l~G~nGsGKSTLl~~l~Gl~   53 (254)
T PRK10418         31 VLALVGGSGSGKSLTCAAALGIL   53 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999988654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=94.54  E-value=0.035  Score=45.12  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ....|.+.|.+|+|||||.+.+..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>PF13479 AAA_24: AAA domain

Probab=94.54  E-value=0.026  Score=46.27  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHH
Q 028037           99 VSLKISLLGDCQIGKTSFVVKY  120 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~  120 (215)
                      ..+|++|.|++|+|||+|+..+
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhC
Confidence            3689999999999999999998

>TIGR01351 adk adenylate kinases

Probab=94.52  E-value=0.031  Score=45.60  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ||+|+|.+|+||||+..++..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=94.49  E-value=0.036  Score=46.85  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      =+++++|++|+|||||++.+.+.-
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l   40 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAI   40 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            489999999999999999988653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=94.49  E-value=0.037  Score=44.34  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.++++|+.|+|||||++.+++-
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999988754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=94.48  E-value=0.033  Score=44.01  Aligned_cols=20  Identities=30%  Similarity=0.330  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |+++|.+|+||||+..++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=94.46  E-value=0.037  Score=45.10  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998865

>PTZ00088 adenylate kinase 1; Provisional

Probab=94.45  E-value=0.035  Score=46.32  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .||+++|.+|+||||+..++..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=94.45  E-value=0.034  Score=47.18  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      =+.++|+.|+|||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999875

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=94.44  E-value=0.034  Score=42.21  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||+|+..+...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~   22 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALN   22 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHH
Confidence            689999999999999998754

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=94.37  E-value=0.039  Score=45.74  Aligned_cols=22  Identities=14%  Similarity=0.238  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988754

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.36  E-value=0.04  Score=44.55  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=94.35  E-value=0.039  Score=49.40  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ....+||+++|.+++|||||++++.
T Consensus        55 ~~~~~kiLLLG~geSGKSTi~KQ~r   79 (389)
T PF00503_consen   55 SKREIKILLLGSGESGKSTILKQMR   79 (389)
T ss_dssp             HHEEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccceEEEECCCCcchhhHHHHHH
Confidence            3467899999999999999999773

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.35  E-value=0.041  Score=44.61  Aligned_cols=22  Identities=18%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=94.35  E-value=0.19  Score=42.86  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC----eEEEEEEEecCCCCCC----C---ccchh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----ARIAFSIWDVGGDSRS----F---DHVPI  167 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~----~~~~l~i~Dt~G~e~~----~---~~~~~  167 (215)
                      ..+|-++|-+.|||||++..+.+-.-+ ..+.      .+.-..+.|    +.-++++.|.+|.-+-    +   ...-.
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasye------fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia  132 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA  132 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCcccccc------ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE
Confidence            458899999999999999998855333 2111      111222222    3357899999985331    1   12223


Q ss_pred             hccCCcEEEEEEeCCChhhHHHHH
Q 028037          168 ACKDAVAILFMFDLTSRCTLNSIV  191 (215)
Q Consensus       168 ~~~~a~~iilvfdit~~~Sf~~i~  191 (215)
                      ..+.++.+++|.|+-.+-+-..+.
T Consensus       133 vartcnli~~vld~~kp~~hk~~i  156 (358)
T KOG1487|consen  133 VARTCNLIFIVLDVLKPLSHKKII  156 (358)
T ss_pred             EeecccEEEEEeeccCcccHHHHH
Confidence            357789999999999987766653

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.33  E-value=0.065  Score=51.43  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus       481 ~vaIvG~sGsGKSTLlklL~gl  502 (686)
T TIGR03797       481 FVAIVGPSGSGKSTLLRLLLGF  502 (686)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=94.33  E-value=0.035  Score=40.45  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |.+-|++|+|||+|++.+...
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~   21 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKD   21 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999997744

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PHA00729 NTP-binding motif containing protein

Probab=94.31  E-value=0.04  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+|++.|.+|||||+|..++...
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999998653

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=94.31  E-value=0.059  Score=46.81  Aligned_cols=60  Identities=12%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccc----eeeeEEE-EEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMA----GLNLINK-TLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~----g~~~~~~-~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ..+.++++|-++||||||++........ .-..++    |...... .+.+.... .+.+.||+|.-
T Consensus       142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil  207 (335)
T KOG2485|consen  142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL  207 (335)
T ss_pred             CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence            3789999999999999999977644332 111122    2222111 13333222 36788999943

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=94.31  E-value=0.041  Score=43.64  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+|+++|.+|+||||+...+..
T Consensus         5 ~~I~liG~~GaGKStl~~~La~   26 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQ   26 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999999874

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=94.29  E-value=0.044  Score=44.24  Aligned_cols=22  Identities=14%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999865

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=94.27  E-value=0.15  Score=45.87  Aligned_cols=98  Identities=13%  Similarity=0.154  Sum_probs=52.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccccee---eeE---------------EEEEEE------------CCeEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL---NLI---------------NKTLMV------------QGARI  148 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~---~~~---------------~~~v~~------------~~~~~  148 (215)
                      .-.|+++|+.||||||-+-++...-.. .....+++   |.|               ...+.+            .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            567899999999999977655432220 11111111   100               000111            11246


Q ss_pred             EEEEEecCCCCCCCccc----hhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037          149 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARK  199 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~----~~~~~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~  199 (215)
                      .+-+.||+|...++...    ..|+.  ...-+.||.+.+..  .+.++..++.+..
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~  337 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL  337 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc
Confidence            88999999988876533    22222  22345567777764  3355555555543

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=94.27  E-value=0.041  Score=44.68  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.24  E-value=0.037  Score=44.97  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..++++|+.||||||.+-++.
T Consensus         2 ~vi~lvGptGvGKTTt~aKLA   22 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLA   22 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHH
Confidence            358999999999999988775

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=94.24  E-value=0.042  Score=43.87  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PLN02165 adenylate isopentenyltransferase

Probab=94.23  E-value=0.09  Score=46.30  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      --++|+|++|+|||+|...+...
T Consensus        44 ~iivIiGPTGSGKStLA~~LA~~   66 (334)
T PLN02165         44 KVVVIMGATGSGKSRLSVDLATR   66 (334)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999987643

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.23  E-value=0.27  Score=43.52  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..+|++.|+.|+|||||++.++..
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHcc
Confidence            468999999999999999999854

>cd01131 PilT Pilus retraction ATPase PilT

Probab=94.23  E-value=0.13  Score=41.67  Aligned_cols=21  Identities=14%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |++.|++|+||||+++.+...
T Consensus         4 ilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999987644

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.23  E-value=0.046  Score=44.35  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999865

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=94.22  E-value=0.043  Score=44.69  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|.++|..|+|||||+++++..
T Consensus        22 ~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        22 LVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            567899999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=94.21  E-value=0.046  Score=44.38  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999865

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=94.20  E-value=0.046  Score=44.32  Aligned_cols=22  Identities=14%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999865

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.19  E-value=0.077  Score=45.18  Aligned_cols=19  Identities=26%  Similarity=0.338  Sum_probs=16.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      ++++|++|+||||+++-..
T Consensus        30 ~vliGpSGsGKTTtLkMIN   48 (309)
T COG1125          30 LVLIGPSGSGKTTTLKMIN   48 (309)
T ss_pred             EEEECCCCCcHHHHHHHHh
Confidence            6899999999999876543

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.18  E-value=0.046  Score=45.18  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999865

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=94.16  E-value=0.047  Score=44.35  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=94.15  E-value=0.046  Score=44.63  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =.+.++|+.|+|||||++-+.+-
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          27 EIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999988754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=94.15  E-value=0.048  Score=44.61  Aligned_cols=23  Identities=26%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+.++|+.|+|||||++-+.+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999998864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=94.14  E-value=0.048  Score=44.61  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=94.13  E-value=0.049  Score=44.30  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999998864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=94.12  E-value=0.071  Score=50.02  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =|+.++|++|+|||||++-+.+-
T Consensus       370 ~~~aIvG~sGsGKSTLl~ll~gl  392 (582)
T PRK11176        370 KTVALVGRSGSGKSTIANLLTRF  392 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47899999999999999988864

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=94.11  E-value=0.047  Score=41.74  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|.+|+||||+...+...
T Consensus         2 i~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhh
Confidence            689999999999999988754

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=94.11  E-value=0.044  Score=48.04  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-+|+++|.+|+|||||++.+..
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999875

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=94.10  E-value=0.049  Score=44.75  Aligned_cols=23  Identities=17%  Similarity=0.238  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            68899999999999999988654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14528 adenylate kinase; Provisional

Probab=94.09  E-value=0.048  Score=43.76  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+|+++|++|+||||+.+.+.
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la   22 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILC   22 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999886

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=94.07  E-value=0.05  Score=44.41  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999865

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=94.04  E-value=0.048  Score=45.13  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          29 FVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999865

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.04  E-value=0.051  Score=43.08  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++.+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          28 IVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.03  E-value=0.052  Score=44.26  Aligned_cols=22  Identities=32%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          33 VTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998865

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.03  E-value=0.082  Score=49.73  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++.++|++|+|||||++-+.+-
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~  399 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGF  399 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999988754

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=94.02  E-value=0.052  Score=44.86  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        37 ~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         37 MMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999865

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.01  E-value=0.052  Score=44.67  Aligned_cols=22  Identities=36%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999999865

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=94.01  E-value=0.051  Score=44.49  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          33 TLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999998865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK06547 hypothetical protein; Provisional

Probab=94.00  E-value=0.058  Score=42.92  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+|||||...+..
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~   37 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAA   37 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56788889999999999999864

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=93.99  E-value=0.05  Score=44.88  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =.+.++|+.|+|||||++.+.+-
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258          32 EIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37889999999999999998865

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.98  E-value=0.055  Score=43.68  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      =.+.++|+.|+|||||++-+.+..
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            378999999999999999887653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=93.97  E-value=0.051  Score=44.37  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          30 IFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999999865

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=93.97  E-value=0.051  Score=42.49  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +.++|.+|+|||||+.++..
T Consensus         2 i~i~G~~gsGKTtl~~~l~~   21 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVK   21 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999885

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=93.97  E-value=0.049  Score=43.15  Aligned_cols=20  Identities=25%  Similarity=0.238  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |++.|..|+||||+++++.+
T Consensus         3 I~ieG~~GsGKtT~~~~L~~   22 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAE   22 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999863

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=93.96  E-value=0.058  Score=42.24  Aligned_cols=86  Identities=15%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeE-------------EEEEEEecCCCC-CCCccchh
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR-------------IAFSIWDVGGDS-RSFDHVPI  167 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~-------------~~l~i~Dt~G~e-~~~~~~~~  167 (215)
                      .+.++|+.|+|||||++-+.+...+    +.|.      +.+++..             +- .+.+.+|.+ +--.+...
T Consensus        28 ~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~------v~~~g~~~~~~~~~~~~~~~i~-~~~qLS~G~~qrl~lara   96 (163)
T cd03216          28 VHALLGENGAGKSTLMKILSGLYKP----DSGE------ILVDGKEVSFASPRDARRAGIA-MVYQLSVGERQMVEIARA   96 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC----CCeE------EEECCEECCcCCHHHHHhcCeE-EEEecCHHHHHHHHHHHH
Confidence            6889999999999999988865332    1221      1111111             11 112233322 22234455


Q ss_pred             hccCCcEEEE--EEeCCChhhHHHHHHHHHHHH
Q 028037          168 ACKDAVAILF--MFDLTSRCTLNSIVGWYSEAR  198 (215)
Q Consensus       168 ~~~~a~~iil--vfdit~~~Sf~~i~~wl~~i~  198 (215)
                      .+.+.+.+++  -++--|..+-+.+.+++.++.
T Consensus        97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~  129 (163)
T cd03216          97 LARNARLLILDEPTAALTPAEVERLFKVIRRLR  129 (163)
T ss_pred             HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence            6677777766  334446666666667776664

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=93.96  E-value=0.055  Score=43.46  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         28 ITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998753

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=93.96  E-value=0.056  Score=43.90  Aligned_cols=23  Identities=35%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          28 FVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999888653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=93.95  E-value=0.05  Score=42.98  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|++.|.+|+||||+.+.+...
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~   25 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSV   25 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988754

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=93.94  E-value=0.052  Score=44.82  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          28 IHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            6889999999999999988864

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=93.93  E-value=0.053  Score=42.79  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||+|..+|...
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~   22 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYA   22 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999999998643

A related protein is found in archaea.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=93.93  E-value=0.082  Score=50.95  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus       507 ~vaIvG~sGsGKSTLlklL~gl  528 (710)
T TIGR03796       507 RVALVGGSGSGKSTIAKLVAGL  528 (710)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            8899999999999999988764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK06762 hypothetical protein; Provisional

Probab=93.92  E-value=0.052  Score=42.27  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .-|++.|.+|+||||+...+...
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~   25 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQER   25 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999988643

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=93.92  E-value=0.053  Score=43.89  Aligned_cols=22  Identities=27%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          28 IYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999865

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.91  E-value=0.053  Score=44.37  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+|+|.+|+||||+...+..
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~   22 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAE   22 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988763

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=93.91  E-value=0.047  Score=45.12  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |.+.|.+|+|||||++.+.+
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            56899999999999988763

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=93.90  E-value=0.055  Score=45.56  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -.+.++|+.|+|||||++-+.+-.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         28 ELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998653

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=93.90  E-value=0.051  Score=49.02  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ....+|+|+|.+|+|||||++.+...
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~~  242 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLANI  242 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            34569999999999999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-11
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-10
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-10
2efc_B	181	Ara7-GdpATVPS9A Length = 181		7e-10
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		9e-10
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-09
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		8e-09
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-08
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-08
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-08
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		5e-08
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-08
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		9e-08
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-07
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-07
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-07
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-07
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-07
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-07
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		2e-07
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-07
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-07
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-07
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-07
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-07
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-07
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-07
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-07
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		3e-07
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-07
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		4e-07
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-07
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-07
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-07
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		5e-07
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-07
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-07
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		6e-07
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-07
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-07
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-07
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-07
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		9e-07
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		9e-07
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-06
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-06
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		1e-06
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-06
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-06
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-06
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-06
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-06
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-06
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-06
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-06
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-06
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-06
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-06
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-06
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		3e-06
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-06
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-06
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-06
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		5e-06
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-06
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		5e-06
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-06
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-06
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-06
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		6e-06
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-06
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-06
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		7e-06
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		7e-06
1byu_A	216	Canine Gdp-Ran Length = 216		7e-06
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		8e-06
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		8e-06
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		8e-06
2bku_A	177	Kap95p:rangtp Complex Length = 177		8e-06
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		8e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-06
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		9e-06
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		9e-06
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		9e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-05
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-05
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-05
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-05
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-05
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-05
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-05
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-05
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-05
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-05
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-05
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-05
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-05
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-05
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-05
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-05
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		4e-05
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		4e-05
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-05
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		8e-05
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		1e-04
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-04
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-04
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-04
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-04
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-04
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-04
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-04
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-04
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-04
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		3e-04
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-04
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-04
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-04
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-04
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-04
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-04
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-04
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-04
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		4e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-04
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-04
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-04
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-04
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		5e-04
1mh1_A	186	Small G-Protein Length = 186		5e-04
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-04
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		5e-04
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-04
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-04
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		6e-04
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-04
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-04
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		8e-04
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-04

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            R     PI  +D+   + ++D+T   +   +  W  E RK
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            R     PI  +D+   + ++D+T   +   +  W  E RK
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +     + + K L + G R+  +IWD  G 
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            R     PI  +D+   + ++D+T   +   +  W  E RK
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 120

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           ++ K+ LLGD   GK+S V+++V ++    QE ++   G    ++TL V  A + F IWD
Sbjct: 11  INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             G  R     P+  + A A + +FD+T++ +      W  E
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQE 109

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           V+ K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  
Sbjct: 9   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  V ++  G   ER     G++   KTL +QG R+   IWD  G  
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A   +  +D+T R +  S+  W  + RK+
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKY 130

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I   IWD  G  R         + AV  L ++D++   +  +   W SE R+
Sbjct: 62  IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+  Q     F IWD  
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           G  R     P+  + + A + ++D+T   T +++  W  E R+
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 105

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 2   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           I   +WD  G  R    +P   +D+ A + ++D+T+  +      W  + R
Sbjct: 62  IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 112

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
           S L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   I   +WD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
             G  R    +P   +D+ A + ++D+T+  +      W  + R
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 105

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
           S L  LK+ LLGD  +GK+S + ++V +  + ++    G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             G  R     P+  + + A + ++D+T   T +++  W  E R+
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 87  TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQG 145
           T SSG D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++ 
Sbjct: 2   TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
             +   +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R
Sbjct: 61  RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVR 113

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/111 (22%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 115

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
            K+ LLG+  +GK+S V+++V  +    QE ++Q A    + +T+ +    + F IWD  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           G  R     P+  + A A + ++D+T+  T      W  E ++
Sbjct: 63  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 105

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S +   K+ LLG+  +GK+S V+++V G   E      G   + +++ +    + F IWD
Sbjct: 4   SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             G  R     P+  + A A + ++D+T++ T      W  E ++
Sbjct: 64  TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR 108

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  T      W  E ++
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 103

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LG+  +GKTS + ++  +  + + Q   G++ ++KTL +    +   +WD  G  R
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
               +P   +D+ A + ++D+T+R +  +   W
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 95

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L +LKI ++G+  +GK+S ++++  +  +  L    G++   KT+ V G +   +IWD  
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  R     P   + A  ++ ++D+T R T   +  W +E
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE 112

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +    +     G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL 208
           R         + A+  + M+D+T+  + N++  W ++ + ++    Q L
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVL 114

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+ ++GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  T      W  E ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR 105

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 107

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++  G   +R+    G++   + + + G RI   +WD  G  
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     V    ++  A++F++D+T+  + +S+  W  E ++
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
           R         + A+ I+ ++D+T   T  +I  W+
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF 98

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           + S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  R     P   ++A A L ++D+T   +      W  E
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE 100

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 118

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
           S +  LK+ LLGD  +GK+S V ++V +  + ++    G + + KT+        F IWD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             G  R     P+  + + A + ++D+T + +  ++  W  E ++
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R    +P   +D+   + ++D+T+  +      W  + R
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 100

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGD 158
           + KI L GD  +GK+SF+++   NE   ++    G++   KTL+V G R    +WD  G 
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
            R         + A  +L ++D+T   +  +I  W
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 79  AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
           +GL  +S +  +G   DS    +KI L+GD  +GK+  +V++V ++   S +   G++  
Sbjct: 2   SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
            KT+ + G ++   +WD  G  R         + A+ I+ ++D+T   T  +I  W+
Sbjct: 59  IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWF 115

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P   + A A + ++D+T+  +      W  E ++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR 107

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
           D D D + +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA   
Sbjct: 5   DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                ++   +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+
Sbjct: 64  SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 118

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  G  
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R    +P   +D+   + ++D+T+  +      W  + R
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVR 101

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
           L   K+  LG+  +GKTS + +++ +  + + Q   G++ ++KT+ ++   +   +WD  
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           G  R    +P   +D+   + ++D+T+  +      W  + R
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 105

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + +YV N+   ++    G+  +N+ L V G  +   IWD  G  
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIIIS 215
           R         + A   L  F +  R +  ++  W  E   +  V     F  +++ 
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++  G   +R+    G++   + + + G RI   +WD  G  
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     V    ++  A++F++D T+  + +S+  W  E ++
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQ 130

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLG+  +GK+S V+++V G   E      G   + +T+ +    + F IWD  G  
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 105

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   +WD  G  
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
           R         + A+ I+ ++D+T   T  +I  W+
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWF 102

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   IWD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
                    + A  I+ ++D+T   T  +I  W+
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWF 98

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++G+  +GKTSF+ +Y  +    +     G++   KT+     R+   IWD  G  
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
           R         + A+  + M+D+T+  + N++  W ++ + ++
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QG         ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             R F  + +A  + A   + +FD+T+  T  ++  W  E
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             R F  + +A  + A   + +FD+T+  T  ++  W  E
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 119

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             R F  + +A  + A   + +FD+T+  T  ++  W  E
Sbjct: 67  QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV ++  +  +   G + + K + V G ++A   +WD  G 
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 159 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
            R F  + +A  + A   + ++D+T+  +  +I  W  E
Sbjct: 69  ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDE 106

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 149
           +G +    + S+K+ L+GD   GKTS ++ +       S            L V+G  + 
Sbjct: 24  AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 150 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW 200
             IWD  G    +D + P+   DA  +L  FD+TS  + ++I   WY E   +
Sbjct: 84  LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           KI L+GD  +GK+  +V++V ++   S +   G++   KT+ + G ++   +WD  G  R
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
                    + A  I+ ++D+T   T  +I  W+
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWF 98

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V G  +   IWD  G  
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+TSR T NS+  W ++AR
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR 124

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ 118

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 91  GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
           G  TD D   L K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++   QGA
Sbjct: 1   GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                   ++   +WD  G  R         +DA   L  FDLTS+ +  ++  W S+
Sbjct: 61  DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQ 118

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGESEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G       R   ++   C      + MFD+TSR T  ++  W+ +
Sbjct: 73  GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 112

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +    +     G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL 208
           R         + A   +  +D+T+  + N++  W ++ + ++    Q L
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVL 117

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKTSF+ +Y  +    +     G++   KT+     RI   IWD  G  
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
           R         + A+  L M+D+ ++ +  ++  W ++ + ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
           V LK+ +LGD  +GKTS + +YV  +     +   G + + K +MV    +   IWD  G
Sbjct: 7   VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             R F  + +A  + A   + +FD+T+  T  ++  W  E
Sbjct: 67  LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDE 105

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 104

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 128

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 107

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + AV  L ++D+    T  ++  W  E R
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR 110

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214
           R         + +   L  F +    +  ++  W  E   +  V +   F  +I+
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 126

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 68  GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R         + AV  L +FDLT   T   +  W  E
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE 107

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G       R   ++   C      + MFD+TSR T  ++  W+ +
Sbjct: 73  GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 112

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R         + AV  L +FDLT   T   +  W  E
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKE 122

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 2   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 100

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G       R   ++   C      + MFD+TSR T  ++  W+ +
Sbjct: 68  GQEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 68  GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 11/104 (10%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E E+  +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                  R   ++   C      + MFD+TSR T  ++  W+ +
Sbjct: 69  QEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214
           R         + +   L  F +    +  ++  W  E   +  V +   F  +I+
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 68  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E E+  +   G+ +           I F++WD  G
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             +           A   + MFD+TSR T  ++  W+ +
Sbjct: 69  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 107

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+ +  L    G+  +NK L V G  +   IWD  G  
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214
           R         + +   L  F +    +  ++  W  E   +  V +   F  +I+
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 124

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV---QGARIAFSIWDV 155
           ++ KI L+GD  +GKT+++ + +    E++   A +  +N  +     QG  I F++WD 
Sbjct: 10  LTYKICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
            G  +      +    A   +  FD+TSR T  ++  W  E
Sbjct: 69  AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKE 109

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 95  DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIW 153
           + ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +W
Sbjct: 7   NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           D  G  +          +A   + MFD+TSR T  ++  W+ +
Sbjct: 67  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 109

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+TSR T N++  W ++AR
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 109

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIA 149
           GYD D      KI L+GD  +GK++ + ++  +E    S    G+    +T+ V+  +I 
Sbjct: 4   GYDYD---YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIK 60
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             IWD  G  R         + AV  L ++D++   +  +   W +E R+
Sbjct: 61  AQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE 110

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 80
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSL 208
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++   TK  L
Sbjct: 81  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 85
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSL 208
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++   TK  L
Sbjct: 86  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWD 154
            ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +WD
Sbjct: 1   GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
             G  +          +A   + MFD+TSR T  ++  W+ +
Sbjct: 61  TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 102

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+TSR T N++  W ++AR
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 110

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDV 155
           ++ + K+ L+GD   GKT+FV +++  E E+  +   G+ +   +       I F +WD 
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
            G  +          +A   + MFD+TSR T  ++  W+ +
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD 101

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 93  DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ------- 144
           D D D + +K   LGD  +GKTS + +Y  G    + +   G++   K ++ +       
Sbjct: 5   DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 145 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
              G RI   +WD  G  R         +DA+  L +FDLT+  +  ++  W S+
Sbjct: 64  VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ 118

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 64
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSL 208
           S  +D+V P++  D+ A+L  FD++   TL+S++  W  E +++   TK  L
Sbjct: 65  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 116

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 -----GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                G  R   ++   C      + MFD+TSR T  ++  W+ +
Sbjct: 68  GLEKFGGLRDGYYIQAQCA-----IIMFDVTSRVTYKNVPNWHRD 107

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 11  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 69
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 70  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 109

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 5   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G  +           A   + MFD+TSR T  ++  W+ +
Sbjct: 64  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 103

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +    + +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
           R         + A+ I+ ++D+T+  + ++I  W
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +    + +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193
           R         + A+ I+ ++D+T+  + ++I  W
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 109

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+TSR T N++  W ++AR
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 107

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 107

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 126

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGD 158
            KI L+GD  +GK++ + ++  +E    S    G+    K++ ++  + I   IWD  G 
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
            R         + AV  L ++D+T + +  +I  W  E R
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELR 107

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
           V  K+ L+GD   GKT+FV +++  E E+   +A L +    L+    R  I F++WD  
Sbjct: 9   VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDS-----RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           G       R   ++   C      +  FD+TSR T  ++  W+ +
Sbjct: 68  GQEKFGGLRDGYYIQAQCA-----IIXFDVTSRVTYKNVPNWHRD 107

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 134

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  R
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
                    + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 100

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK   ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + + N++  W  E  ++
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY 117

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 96  SDLVSLKISLLGDCQIGKTS----FVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAF 150
           S +  LKI +LGD   GKTS    F  +  G + ++++   GL+   + + + G   +  
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTL 58
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            IWD+GG +     +      A  +L ++D+T+  +  ++  WY+  +K
Sbjct: 59  QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     +    +  G+    + + + G +I   IWD  G  
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            SF  +  +  + A   L ++D+T R T N +  W  +AR+
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQ 110

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+T R T N +  W ++AR
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 114

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
           R         + A   L ++D+T R T N +  W ++AR
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 129

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 95  DSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIW 153
           D D +  KI L+G+  +GKT  V ++  G          G++ + KT+ + G ++   IW
Sbjct: 22  DYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW 80
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           D  G  R         + A A++  +D+T   +   +  W  E  ++
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY 127

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     +    +  G+    + + + G +I   IWD  G  
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            SF  +  +  + A   L ++D+T R T N +  W  +AR+
Sbjct: 82  -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
            L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +I   IWD  G 
Sbjct: 26  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ 85
Query: 159 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
            R F+ +  A  + A  I+ ++D+T + T + +  W     K+
Sbjct: 86  ER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY 127

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +    S +   G++   +T+ ++   +   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T R + +++  W  E  ++
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRY 110

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 121

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 103

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 112

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++GD  +GK+S ++++  N    S +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           R         +    ++ ++D+TS  +  ++  W  E
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHE 106

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 71
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTK 205
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +   T+
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 117

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + +  ++  W  E  ++
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R         + A  I+ ++D+T + +  ++  W  E  ++
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY 110

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K   +GD  +GKT  ++ Y GN           +  +  ++V G+ +   +WD  G   
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKW 200
                P++ + A   L  F L S+ +  +I   W  E + +
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHY 107

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 70
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTK 205
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +   T+
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 116

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ L+GD Q GKT+ +     +    +            L  +  R+  S+WD  G S  
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 87
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQVTK 205
           +D+V P+   D+ A+L  FD++   T++S +  W +E   +   T+
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR 133

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 105

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 106

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 102

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 102

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
             +D + P++       L  F L S  +  ++   WY E R
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
           G    S + ++K  ++GD  +GK   ++ Y  N           +  +  +MV G  +  
Sbjct: 1   GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
            +WD  G    +D + P++       L  F L S  +  ++   WY E R
Sbjct: 61  GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 109

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
            +D + P++       L  F L S  + + +   WY E R
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G   
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEAR 198
            +D + P++       L  F L S  + + +   WY E R
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-12
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-11
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-11
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	6e-11
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-11
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	8e-11
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-10
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-10
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-10
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-10
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-10
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-10
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-10
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-10
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-10
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-10
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-10
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-10
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-10
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-10
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-10
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-10
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-10
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-10
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-10
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	4e-10
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-10
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	5e-10
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-10
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-10
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-10
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-10
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-09
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-09
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-09
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-09
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-09
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-09
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-08
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-08
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-08
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-07
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-07
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-07
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-07
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	2e-07
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-07
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	5e-07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-06
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-06
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-06
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-06
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	4e-06
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-06
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-05
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-05
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-05
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	9e-05
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-04
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-04
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  K+ L+GD   GKT+FV +++  E +++ +   G+ +           I F++WD  G
Sbjct: 14  VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73

Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             + F  +       A   + MFD+TSR T  ++  W+ +  +
Sbjct: 74  QEK-FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR 115

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 58.8 bits (143), Expect = 4e-11
 Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S   +  +  + D +  K+ ++G+  +GKTSF+ +Y  +      +   G++   KT+  
Sbjct: 9   SGRENLYFQGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
              R+   IWD  G  R +  +  A  + A+  + M+D+T+  + N++  W ++ + 
Sbjct: 68  HEKRVKLQIWDTAGQER-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 57.9 bits (141), Expect = 6e-11
 Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  +  A  + A+ I+ ++D+T   T  +I  W+    +
Sbjct: 64  R-FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNE 103

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 58.4 bits (142), Expect = 6e-11
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S      SD +  K+ L+G+  +GKTSF+ +Y  +      +   G++   KT+     R
Sbjct: 12  SGLVPRGSDYM-FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I   IWD  G  R +  +  A  + A+  L M+D+ ++ +  ++  W ++ + 
Sbjct: 71  IKLQIWDTAGQER-YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT 122

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S+G D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   
Sbjct: 5   STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64

Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   +WD  G  R    +P   +D+   + ++D+T+  +      W  + R 
Sbjct: 65  VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRT 116

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SSG D D     LKI ++G+  +GK+S ++++  +          G++   KT+ V G +
Sbjct: 5   SSGMDEDVLTT-LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
              +IWD  G  R F  +  +  + A  ++ ++D+T R T   +  W +E   
Sbjct: 64  AKLAIWDTAGQER-FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELET 115

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 24/103 (23%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 160 RSFDHVPIAC---KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F    +     ++  A++F++D+T+  + +S+  W  E ++
Sbjct: 81  R-F-RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQ 121

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  +  A  + A+ I+ ++D+T+  + ++I  W     +
Sbjct: 69  R-FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 108

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R +  +  A  + AV  L ++D+    T  ++  W  E R 
Sbjct: 90  R-YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 129

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+G+  +GKT+ + ++  NE    S    G+    +T+M+  A +   IWD  G  R
Sbjct: 27  KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            +  +  A  + AV  L +FDLT   T   +  W  E   
Sbjct: 87  -YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD 125

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 63  TRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122
           +      SS      +        + +  YD        K+ L+GD  +GK+  ++++  
Sbjct: 4   SHHHHHHSSGENLYFQGRP---MSSMNPEYDY-----LFKLLLIGDSGVGKSCLLLRFAD 55

Query: 123 NE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFD 180
           +   E  +   G++   +T+ + G  I   IWD  G  R F  +  +  + A  I+ ++D
Sbjct: 56  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-FRTITSSYYRGAHGIIVVYD 114

Query: 181 LTSRCTLNSIVGWYSEARK 199
           +T + + N++  W  E  +
Sbjct: 115 VTDQESFNNVKQWLQEIDR 133

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SSG     D + +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G +
Sbjct: 10  SSGNGKSYDSI-MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   +WD  G  R F  +  A  + A+ I+ ++D+T   T  +I  W+    +
Sbjct: 69  VKLQLWDTAGQER-FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNE 120

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  R
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 161 SFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            +  +  A  + AV  L ++D+    T  ++  W  E R 
Sbjct: 67  -YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 105

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G    +D   L++ ++G   +GKTS + ++  +   E      G++   KT+ ++G +
Sbjct: 16  PRGSPRPADFK-LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK 74

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I   IWD  G  R F+ +  A  + A  I+ ++D+T + T + +  W     K
Sbjct: 75  IRLQIWDTAGQER-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK 126

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 56.4 bits (137), Expect = 2e-10
 Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           + +   K+ LLG+  +GK+S V+++V  +  E      G   + +T+ +    + F IWD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             G  R     P+  + A A + ++D+T+  +      W  E ++
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR 106

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S+    +   +  K  ++GD  +GK+  + ++   +         G+    + + V G +
Sbjct: 5   SATAPYNYSYI-FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQK 63

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I   IWD  G  R F  V  +  + A   L ++D+T R T N +  W ++AR 
Sbjct: 64  IKLQIWDTAGQER-FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 115

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G  R
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                PI  +D+   + ++D+T   +   +  W  E RK
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 91  GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIA 149
           G +     V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    + 
Sbjct: 1   GSE-----VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR 55

Query: 150 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             +WD  G    FD +  A  + A A + +F  T R +  +I  W  +   
Sbjct: 56  LMLWDTAGQEE-FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 105

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
           +G          K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +
Sbjct: 2   AGKS-----SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFV 56

Query: 149 AFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
              IWD  G  R F  +     + +   L  F +    +  ++  W  E   
Sbjct: 57  TMQIWDTAGQER-FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIY 107

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R +  +  A  + A+  + M+D+T+  + N++  W ++ + 
Sbjct: 69  R-YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKT 108

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
            S     S     KI L GD  +GK+SF+++   NE +E      G++   KTL+V G R
Sbjct: 18  GSAKSFSSQKA-YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER 76

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
               +WD  G  R F  +  +  + A  +L ++D+T   +  +I  W      
Sbjct: 77  TVLQLWDTAGQER-FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIED 128

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
               S      S +  LK+ LLGD  +GK+S V ++V +          G + + KT+  
Sbjct: 8   HHHSSGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                 F IWD  G  R     P+  + + A + ++D+T + +  ++  W  E ++
Sbjct: 68  GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKE 123

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 4/101 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  G  
Sbjct: 12  KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  V  A  +DA A+L ++D+T++ + ++I  W +E  +
Sbjct: 72  R-FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHE 111

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           +S          LK+ +LGD  +GKTS + +YV  +   +     G + + K +MV    
Sbjct: 2   TSRKKVL-----LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   IWD  G  R F  + +A  + A   + +FD+T+  T  ++  W  E   
Sbjct: 57  VTMQIWDTAGQER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLI 108

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 86  RTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ 144
              SSG       +  K  ++GD  +GK+  ++++     Q       G+    + + + 
Sbjct: 8   HHHSSGLVPRGSYL-FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID 66

Query: 145 GARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           G +I   IWD  G    F  +  +  + A   L ++D+T R T N +  W  +AR+
Sbjct: 67  GKQIKLQIWDTAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 121

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 55.6 bits (135), Expect = 4e-10
 Identities = 22/108 (20%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ ++GD  +GK+S ++++  N      +   G++   +T+ + G ++   IWD  G  
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK-WNQVTK 205
           R F  +     +    ++ ++D+TS  +  ++  W  E  +  + V +
Sbjct: 70  R-FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR 116

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  +  +  + +  I+ ++D+T + + N +  W  E  +
Sbjct: 69  R-FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR 108

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S  Y  D DL+  KI L+GD  +GK++ + ++  NE    S    G+    +TL ++G R
Sbjct: 3   SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61

Query: 148 IAFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I   IWD  G  R +  +  A  + AV  L ++D++   +  +   W SE R+
Sbjct: 62  IKAQIWDTAGQER-YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE 113

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 56.1 bits (136), Expect = 5e-10
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G   D D +  KI L+G+  +GKT  V ++             G++ + KT+ + G +
Sbjct: 16  PRGSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   IWD  G  R F  +  +  + A A++  +D+T   +   +  W  E  +
Sbjct: 75  VKLQIWDTAGQER-FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ 126

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 5/113 (4%)

Query: 91  GYDTDSDL-VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGL-NLINKTLMVQGAR 147
           G  +     ++ KI L+GD  +GKT+++ + +    ++      G  N     L  QG  
Sbjct: 1   GPGSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNV 60

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           I F++WD  G  +    +       A   +  FD+TSR T  ++  W  E + 
Sbjct: 61  IKFNVWDTAGQEK-KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQA 112

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 55.7 bits (135), Expect = 6e-10
 Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 3/100 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+GD  +GK+  ++++  +   E  +   G++   +T+ + G  I   IWD  G  R
Sbjct: 18  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            F  +  +  + A  I+ ++D+T + + N++  W  E  +
Sbjct: 78  -FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 116

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 23/111 (20%), Positives = 52/111 (46%), Gaps = 1/111 (0%)

Query: 90  SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARI 148
           S  D  + L   K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
              +WD  G  R    +P   +D+   + ++D+T+  + +    W  + R 
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRT 114

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           + S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 157 GDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           G  R F  + P   ++A A L ++D+T   +      W  E  +
Sbjct: 61  GQER-FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHE 103

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S          SD +  K  ++G    GK+  + +++ N+ ++ S    G+   ++ + V
Sbjct: 11  SSGLVPRGSIWSDFL-FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV 69

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            G  +   IWD  G  R F  V  +  + A   L ++D+TSR T NS+  W ++AR 
Sbjct: 70  GGKTVKLQIWDTAGQER-FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDART 125

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S   D   D +  K+ L+GD  +GKT  V ++      ER     G++   KTL +QG R
Sbjct: 19  SGDPDEQYDFL-FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   IWD  G  R F  +  +  + A   +  +D+T R +  S+  W  + RK
Sbjct: 78  VKLQIWDTAGQER-FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRK 129

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 9/114 (7%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           SS          LK+ +LGD  +GKTS + +YV ++  ++     G + + K + V G +
Sbjct: 2   SSRKKNI-----LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK 56

Query: 148 IA-FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +A   +WD  G  R F  + +A  + A   + ++D+T+  +  +I  W  E   
Sbjct: 57  VATMQVWDTAGQER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 109

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 54.1 bits (131), Expect = 2e-09
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R F  V  +  + A   L ++D+TSR T N++  W ++AR 
Sbjct: 71  R-FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARM 110

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S L  LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             G  R     P+  + + A + ++D+T   T +++  W  E R+
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQ 106

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ LLGD   GK+S V+++V ++  E      G    ++TL V  A + F IWD  G  R
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                P+  + A A + +FD+T++ +      W  E + 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQA 112

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
              +  G      +   K+ L+GD Q GKT+ +     +   E  +     N     L  
Sbjct: 12  ENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLET 70

Query: 144 QGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
           +  R+  S+WD  G    +D+V P+   D+ A+L  FD++   T++S +  W +E   
Sbjct: 71  EEQRVELSLWDTSGSPY-YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD 127

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 50.2 bits (121), Expect = 4e-08
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGD 158
           LKI +LGD   GKTS    +      ++  Q  GL+   + + + G   +   IWD+GG 
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 159 SRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +     +       A  +L ++D+T+  +  ++  WY+  +K
Sbjct: 67  TI-GGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKK 107

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           +LKI ++GD  +GKT  ++ +   E     +     N  +  +  +       +WD  G 
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQ 81

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
              +D + P++  D+  +L  F + +R + ++I   W  E + 
Sbjct: 82  EE-YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 50.4 bits (121), Expect = 6e-08
 Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 13/111 (11%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG----------ARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++              ++ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 150 FSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
             +WD  G  R F  +  A  +DA+  L MFDLTS+ +  ++  W S+ + 
Sbjct: 86  LQLWDTAGQER-FRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 135

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQ----------GARIAF 150
           K   LGD  +GKTS + +Y   +   + +   G++   K ++ +          G RI  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72

Query: 151 SIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            +WD  G  R F  +  A  +DA+  L +FDLT+  +  ++  W S+ + 
Sbjct: 73  QLWDTAGLER-FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQM 121

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 67  SSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE 126
               S   D    G   L     +G +    + S+K+ L+GD   GKTS ++ +      
Sbjct: 4   HHHHSSGVDL---GTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFP 60

Query: 127 RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRC 185
            S            L V+G  +   IWD  G    +D + P+   DA  +L  FD+TS  
Sbjct: 61  ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-YDRLRPLFYPDASVLLLCFDVTSPN 119

Query: 186 TLNSIVG-WYSEARK 199
           + ++I   WY E   
Sbjct: 120 SFDNIFNRWYPEVNH 134

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  KI ++GD Q GKT+ +  +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 27  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 85

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
               +D+V P++  D+ A+L  FD++   TL+S++  W  E ++
Sbjct: 86  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 128

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V  KI ++GD Q GKT+ +  +  +   E  +     N    +  +   RI  S+WD  G
Sbjct: 6   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSG 64

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
               +D+V P++  D+ A+L  FD++   TL+S++  W  E ++
Sbjct: 65  SPY-YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE 107

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 3/102 (2%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
             +D + P++       L  F L S  +  ++   WY E R 
Sbjct: 65  D-YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 47.7 bits (114), Expect = 4e-07
 Identities = 15/135 (11%), Positives = 50/135 (37%), Gaps = 20/135 (14%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV--GNE-QERSLQMAGLNL 136
           G   + +      D  + L   K++++G+  +GK++ +  +   G++  +     +G+ +
Sbjct: 1   GAASMVKKEVKPIDITATLR-CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEV 59

Query: 137 INKTLMVQGARIAFSIWDVGGDS------RSFDHVPIAC---KDAVAILFMFDLTSRCTL 187
           +   + +    ++  ++    D+      +                  + +FD++S  + 
Sbjct: 60  VVAPVTIPDTTVSVELFL--LDTAGSDLYKE-----QISQYWNGVYYAILVFDVSSMESF 112

Query: 188 NSIVGWYSEARKWNQ 202
            S   W+   +    
Sbjct: 113 ESCKAWFELLKSARP 127

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 17/112 (15%), Positives = 47/112 (41%), Gaps = 19/112 (16%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMA--GLNLINKTLMVQGAR---IAFSIWD 154
           +K+ ++G+   GKT+ + + +  +  +  +Q A  G+++ +  + ++  R   +  ++WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 155 VGGDSR------SFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARK 199
             G          F             L ++DL+     ++++  W    + 
Sbjct: 63  FAGREEFYSTHPHF------MTQRALYLAVYDLSKGQAEVDAMKPWLFNIKA 108

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
             G    ++   +K  L+GD  +GKTS VV Y  N      +  A  N  +  + V G  
Sbjct: 9   GRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN-FSAVVSVDGRP 67

Query: 148 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARK 199
           +   + D  G    FD + P+   +    L  F + S  +  N    W  E R 
Sbjct: 68  VRLQLCDTAGQD-EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC 120

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           +  K+ ++GD   GKT  ++ +  ++  E  +     N I   + V G ++  ++WD  G
Sbjct: 24  IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAG 82

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
               +D + P++  D   IL  F + S  +L +I   W  E + 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           +  K+ ++GD   GKT  ++ +  +E  E  +     N +   + V G ++  ++WD  G
Sbjct: 24  IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAG 82

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
               +D + P++  D   IL  F + S  +L +I   W  E + 
Sbjct: 83  QED-YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH 125

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGN--EQ-----ERSLQMAGLNLINKTLMVQGARI 148
             +  L++ +LGD + GK+S + +++    +                   K ++V G   
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY--------KKEMLVDGQTH 54

Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
              I +  G              A A++F+F L    +  ++   + +
Sbjct: 55  LVLIREEAGAPD--AK---FSGWADAVIFVFSLEDENSFQAVSRLHGQ 97

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 96  SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
           S    +K   +GD  +GKT  ++ Y  N      +     N     ++V GA +   +WD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWD 62

Query: 155 VGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
             G    ++ + P++ + A   +  F L S+ +  ++   W  E + 
Sbjct: 63  TAGQED-YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKH 108

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 5/114 (4%)

Query: 89  SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
           S   +      ++K  ++GD  +GKT  ++ Y  N      +     N     +MV G  
Sbjct: 19  SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKP 77

Query: 148 IAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
           +   +WD  G    +D + P++       L  F L S  +  ++   WY E R 
Sbjct: 78  VNLGLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 38/143 (26%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQG-------------- 145
            K  LLG+  +GK+S V++   +   E +    G +     + +                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 146 -----------------------ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182
                                    I F IWD  G  R    VP+  + A   + +FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 183 SRCTLNSIVGWYSEARKWNQVTK 205
           +  TL+    W ++ +  +    
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYII 150

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           + LK  ++GD  +GKT  ++ Y  +   E  +     +    ++ V G +    ++D  G
Sbjct: 17  LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAG 75

Query: 158 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
               +D + P++       L  F + +  +  ++   W  E ++
Sbjct: 76  -QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 118

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
            +K   +GD  +GKT  ++ Y  N+     +     N     + V G  +   +WD  G 
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAG- 66

Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARK 199
              +  + P++ + A   +  F L S+ +  +++  W  E R+
Sbjct: 67  QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 21/116 (18%)

Query: 89  SSGYDTDSDLVS-LKISLLGDCQIGKTSFVVKYVGNE-------QERSLQMAGLNLINKT 140
           SSG +        LK+ ++G+   GK++ V +Y+          +             K 
Sbjct: 8   SSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF--------KKE 59

Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           ++V G      I D GG                A++F+F L    +  ++  ++  
Sbjct: 60  IVVDGQSYLLLIRDEGGPPE-LQF----AAWVDAVVFVFSLEDEISFQTVYNYFLR 110

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 41.9 bits (98), Expect = 9e-05
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--------VQGARIAFS 151
           +K+ L+GD   GKTS + + +G     +  Q  GLN++ K            +     F 
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
            WD GG              +   + + D  +    +    W     K
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHY---WLRHIEK 146

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+ L+G+  +GK++    + G +           +   + +MV    +   ++D+     
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 161 SFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           +   +   C +   A L +F +T R + + +       R 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA 103

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 3/116 (2%)

Query: 85  SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV 143
           S   +  +    D +  K+ L+G+  +GK++    + G +           +   + +MV
Sbjct: 9   SGRENLYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67

Query: 144 QGARIAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEAR 198
               +   ++D+     +   +   C +   A L +F +T R + + +       R
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLR 123

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 21/105 (20%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE--------QERSLQMAGLNLINKTLMVQGARIAFSIW 153
            +++LG    GK++  VK++            E +              V    +   + 
Sbjct: 23  NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS--------SEETVDHQPVHLRVM 74

Query: 154 DVGG--DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
           D       R+ +        A A L ++ + SR + +S   +   
Sbjct: 75  DTADLDTPRNCER---YLNWAHAFLVVYSVDSRQSFDSSSSYLEL 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.92
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.91
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.91
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.91
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.91
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.91
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.9
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.9
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.9
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.9
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.9
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.9
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.9
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.9
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.9
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.9
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.9
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.9
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.89
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.89
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.89
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.89
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.89
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.89
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.89
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.89
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.89
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.89
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.89
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.89
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.88
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.88
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.88
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.88
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.88
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.87
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.87
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.87
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.87
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.87
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.87
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.86
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.86
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.86
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.86
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.86
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.85
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.84
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.84
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.83
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.83
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.72
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.8
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.77
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.77
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.74
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.74
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.74
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.71
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.68
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.67
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.66
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.63
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.62
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.6
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.6
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.6
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.6
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.59
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.57
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.56
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.56
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.55
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.55
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.55
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.54
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.53
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.52
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.52
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.49
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.48
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.48
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.47
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.46
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.46
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.45
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.44
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.43
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.43
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.42
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.42
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.41
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.4
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.39
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.39
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.38
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.37
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.37
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.36
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.33
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.33
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.31
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.3
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.29
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.29
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.28
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.28
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.28
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.27
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.27
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.27
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.27
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.26
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.26
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.25
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.24
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.22
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.19
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.18
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.17
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.17
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.17
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.17
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.16
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.16
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.15
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.13
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.13
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.12
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.12
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.09
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.09
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.07
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.96
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.95
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.91
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.69
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.59
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.58
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.38
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.37
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.28
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.22
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.21
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.2
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.06
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.04
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.94
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.94
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.89
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.84
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.59
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	97.41
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.39
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.19
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.14
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.09
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.93
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.92
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.33
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.2
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.19
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.13
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.11
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.88
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.84
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	95.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.84
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	95.78
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	95.77
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.69
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.69
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	95.67
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	95.6
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.53
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.38
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	95.36
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	95.33
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.31
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.26
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.23
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	95.2
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	95.19
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.17
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.16
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.12
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.09
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.08
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	95.08
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	95.05
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	95.03
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.03
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.03
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	95.03
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.01
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.0
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	95.0
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	94.99
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.99
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.98
4a74_A	231	DNA repair and recombination protein RADA; hydrola	94.92
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.81
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	94.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.77
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.76
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	94.75
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	94.73
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.72
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	94.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.68
2eyu_A	261	Twitching motility protein PILT; pilus retraction	94.67
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	94.66
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	94.66
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.65
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.65
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.63
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.63
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.61
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	94.61
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	94.61
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.6
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	94.59
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.58
1g6h_A	257	High-affinity branched-chain amino acid transport	94.54
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	94.5
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	94.47
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.47
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.46
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	94.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.44
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.43
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.42
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.42
3bos_A	242	Putative DNA replication factor; P-loop containing	94.42
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	94.42
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	94.42
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	94.41
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.37
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.36
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.35
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.34
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.33
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	94.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.32
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.32
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	94.31
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.31
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.31
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.3
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.27
1via_A	175	Shikimate kinase; structural genomics, transferase	94.26
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.26
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	94.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.23
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.22
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.21
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.17
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	94.17
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.15
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.12
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	94.07
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	94.06
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	94.06
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	94.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	94.03
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	94.01
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.01
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	93.99
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	93.98
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	93.97
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	93.95
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	93.95
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	93.91
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	93.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	93.89
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	93.89
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.88
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	93.87
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	93.83
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	93.82
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	93.81
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	93.8
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	93.77
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.73
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	93.72
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	93.71
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	93.7
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	93.7
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.69
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.67
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.66
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.64
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	93.63
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	93.63
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	93.61
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	93.61
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.59
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	93.57
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.57
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	93.57
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	93.55
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	93.54
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.51
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	93.5
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	93.49
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.47
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	93.45
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	93.39
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.37
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.34
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	93.33
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.33
3co5_A	143	Putative two-component system transcriptional RES	93.32
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	93.32
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	93.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.3
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	93.3
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	93.3
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	93.28
2vli_A	183	Antibiotic resistance protein; transferase, tunica	93.27
2ewv_A	372	Twitching motility protein PILT; pilus retraction	93.24
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	93.24
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.21
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	93.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	93.16
2fna_A	357	Conserved hypothetical protein; structural genomic	93.15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	93.1
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.04
2og2_A	359	Putative signal recognition particle receptor; nuc	93.02
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	92.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	92.97
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	92.97
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	92.94
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	92.93
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	92.91
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.88
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	92.88
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	92.87
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	92.85
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	92.84
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.84
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	92.8
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	92.78
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	92.73
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	92.7
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	92.65
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	92.65
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.57
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	92.56
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	92.55
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	92.54
1p9r_A	418	General secretion pathway protein E; bacterial typ	92.51
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	92.49
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	92.49
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.43
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	92.4
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	92.38
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.3
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	92.27
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.27
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	92.27
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	92.26
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	92.24
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	92.2
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.18
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	92.15
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	92.06
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.04
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	92.01
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	92.01
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	91.95
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	91.94
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	91.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	91.93
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	91.89
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	91.73
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	91.71
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	91.67
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	91.66
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	91.58
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	91.48
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	91.46
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.45
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	91.43
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	91.4
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	91.35
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	91.3
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	91.23
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	91.23
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	91.19
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	91.18
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	91.14
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	91.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	91.03
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	91.0
2qgz_A	308	Helicase loader, putative primosome component; str	90.97
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	90.93
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	90.9
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	90.88
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	90.85
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	90.84
1tue_A	212	Replication protein E1; helicase, replication, E1E	90.83
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	90.72
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	90.7
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	90.68
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	90.68
2r44_A	331	Uncharacterized protein; putative ATPase, structur	90.62
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	90.61
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	90.59
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	90.52
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	90.51
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	90.51
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	90.45
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	90.42
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	90.3
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	90.27
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	90.19
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	90.18
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	90.14
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	90.11
3pvs_A	447	Replication-associated recombination protein A; ma	90.08
2chq_A	319	Replication factor C small subunit; DNA-binding pr	90.05
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	90.04
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.01
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	90.0
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	89.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	89.94
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	89.92
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	89.92
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	89.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.85

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=1.9e-30  Score=212.93  Aligned_cols=118  Identities=19%  Similarity=0.423  Sum_probs=100.5

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      +.++..|||+|||++|||||||++||+++.|. .+.+|+|.++..+.+.+++..++++||||+|+++|..+++.||++++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            34567899999999999999999999999999 78889999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++++|||+++++||+++..|++++++...+++|++||+.
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgN  126 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN  126 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence            999999999999999999999999988878899999864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=2.6e-24  Score=170.92  Aligned_cols=114  Identities=19%  Similarity=0.410  Sum_probs=102.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            45899999999999999999999999998 66778898998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++.+....++|++||+
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~  133 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIG  133 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            99999999999999999999998877788988775

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=7.2e-24  Score=167.90  Aligned_cols=113  Identities=22%  Similarity=0.486  Sum_probs=105.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~  100 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL  100 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence            4799999999999999999999999998 777888999888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||++++++|+.+..|+.++.+....+.|++||+
T Consensus       101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  134 (189)
T 2gf9_A          101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVG  134 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            9999999999999999999998876788888775

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.6e-24  Score=173.67  Aligned_cols=114  Identities=20%  Similarity=0.412  Sum_probs=106.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|+++.|. .+.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            35799999999999999999999999998 77789999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|++++.+....++|++||+
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  138 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVG  138 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            99999999999999999999998877788977764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=1.5e-24  Score=174.34  Aligned_cols=115  Identities=26%  Similarity=0.455  Sum_probs=99.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            44799999999999999999999999998 77788899998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++++.+....++|++||+.
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~N  142 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN  142 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            999999999999999999999988777889887753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.92  E-value=3.7e-24  Score=170.03  Aligned_cols=114  Identities=13%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|+++.|. .+.+|++.++ ...+.+++..+.++||||+|+++|..+ ..+++++|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            345799999999999999999999999988 6777888776 456778999999999999999999876 6799999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~  212 (215)
                      ++|||+++++||+++..|+.++.+...   .++|++||+.
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  135 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGN  135 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence            999999999999999999999987642   5788777753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.2e-23  Score=162.20  Aligned_cols=113  Identities=23%  Similarity=0.435  Sum_probs=105.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            5789999999999999999999999988 677899999888888999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+....+.|+++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~  115 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVG  115 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            9999999999999999999998877788987764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=3.9e-24  Score=167.98  Aligned_cols=114  Identities=20%  Similarity=0.460  Sum_probs=82.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++++.++..+.+.+++..+.+++||++|+++|..++..+++++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            4799999999999999999999999988 777899999988889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++++||+++..|+.++.+....++|++||+.
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n  121 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN  121 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            99999999999999999999988767889887753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.91  E-value=1.3e-23  Score=161.95  Aligned_cols=114  Identities=21%  Similarity=0.449  Sum_probs=105.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++||++|++++..++..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999999988 66778898988888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++.+...+++|++||+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~  118 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSG  118 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            99999999999999999999998877789988775

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=166.41  Aligned_cols=114  Identities=25%  Similarity=0.418  Sum_probs=105.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.|.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45799999999999999999999999998 67778899998888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++.+|+.+..|+.++......++|++||+
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~  137 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVG  137 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            99999999999999999999988776788887775

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.91  E-value=7e-24  Score=172.27  Aligned_cols=116  Identities=22%  Similarity=0.367  Sum_probs=99.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      ......+||+++|++|||||||+++|+++.|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            34456899999999999999999999999998 6778888776 467778888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEee
Q 028037          174 AILFMFDLTSRCTLNS-IVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~-i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++|+|||+++++||++ +..|++++.+.. +++|++||+.
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n  139 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGC  139 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            9999999999999999 689999999886 5789888763

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.91  E-value=5e-24  Score=169.78  Aligned_cols=114  Identities=21%  Similarity=0.429  Sum_probs=100.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35799999999999999999999999988 77788899999899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|++.+......++|++||+
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~  138 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG  138 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            99999999999999999999998887788988775

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=6e-24  Score=168.69  Aligned_cols=110  Identities=17%  Similarity=0.303  Sum_probs=95.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      .....+||+++|++|||||||+++|+++.|. .+.+| +.++ .+.+.+++..+.++||||+|+++|.     +++++|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            3456899999999999999999999999998 55555 4444 4788899999999999999999876     8889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +++|||+++++||+++..|+.++..... .++|++||+.
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  127 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGT  127 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            9999999999999999999999988764 5789888753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.91  E-value=9.9e-24  Score=163.15  Aligned_cols=114  Identities=27%  Similarity=0.505  Sum_probs=98.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            34799999999999999999999999998 77789999988888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|++++.+....++|+++|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~  118 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVG  118 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence            99999999999999999999988766678887765

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=1.4e-23  Score=163.31  Aligned_cols=114  Identities=21%  Similarity=0.431  Sum_probs=105.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            34799999999999999999999999988 67778898988888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++++|+++..|+.++......+.|+++|+
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~  127 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG  127 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            99999999999999999999998887788987775

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.91  E-value=1.3e-23  Score=163.52  Aligned_cols=117  Identities=18%  Similarity=0.442  Sum_probs=105.8

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      ..++..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||+|++++..++..+++++|
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            33456799999999999999999999999998 77788899999899999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|||+++++||+++..|+.++......++|+++|.
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  126 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVG  126 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            99999999999999999999999988776788877765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=2.4e-23  Score=162.74  Aligned_cols=115  Identities=25%  Similarity=0.459  Sum_probs=106.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            456799999999999999999999999998 6678889999888899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|||++++.+|+.+..|+.++.+...+++|++||+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~  124 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAG  124 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            999999999999999999999999877788988775

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.7e-23  Score=162.34  Aligned_cols=116  Identities=25%  Similarity=0.510  Sum_probs=98.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      ....+||+++|++|||||||+++|.++.+.  .+.++++.++....+.+++..+.+++||++|++++..++..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            346899999999999999999999999985  566788999988888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++|||+++++||+++..|+.++......++|++||+.
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n  124 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN  124 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            99999999999999999999999988777889887753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.91  E-value=8.3e-24  Score=167.54  Aligned_cols=114  Identities=21%  Similarity=0.471  Sum_probs=103.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-ccchhhccCCcEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAI  175 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~i  175 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+|||+|++++. .++..+++++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            34799999999999999999999999998 677889999988999999999999999999999998 8899999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |+|||+++++||+++..|++++.+.. ..++|++||+
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  134 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVG  134 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999999999999998875 4678877765

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.91  E-value=1.4e-23  Score=164.08  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=94.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++.|..+.+|++..+ .+.+.+++..+.+++|||+|+++     ..|++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            467999999999999999999999999987777877554 67788899999999999999987     568899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~  212 (215)
                      |||+++++||+++..|++++....   ..++|++||+.
T Consensus        79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  116 (178)
T 2iwr_A           79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT  116 (178)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            999999999999999877765543   36789888864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=2.2e-23  Score=163.84  Aligned_cols=115  Identities=22%  Similarity=0.396  Sum_probs=106.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+++||++|++++..++..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            44799999999999999999999999998 77788999998899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|+.++......++|++||+.
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n  123 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGN  123 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            999999999999999999999988777899887753

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.91  E-value=3.3e-23  Score=166.22  Aligned_cols=114  Identities=19%  Similarity=0.432  Sum_probs=106.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            34799999999999999999999999998 77889999998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+.+..|++++......++|++||+
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  120 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVG  120 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            99999999999999999999998877788887775

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.91  E-value=3e-23  Score=164.37  Aligned_cols=115  Identities=20%  Similarity=0.443  Sum_probs=107.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            35799999999999999999999999998 77789999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+.+..|+.++.+....++|++||+.
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~n  129 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN  129 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            999999999999999999999998877899887753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.91  E-value=4.1e-23  Score=159.43  Aligned_cols=114  Identities=25%  Similarity=0.434  Sum_probs=105.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.|.++....+.+++..+.+.+|||+|++++..+...+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999988 77788999988888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++.||+++..|++++.....+++|+++|+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~  118 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG  118 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence            99999999999999999999999877889988774

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=9.3e-24  Score=168.91  Aligned_cols=114  Identities=25%  Similarity=0.425  Sum_probs=94.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.++.|.++....+.+++..+.++|||++|++++..++..+++++|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            44799999999999999999999999988 77788899998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|++++......++|++||+
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  140 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVG  140 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEE
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            99999999999999999999998876778887775

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=2.3e-23  Score=168.48  Aligned_cols=113  Identities=25%  Similarity=0.402  Sum_probs=100.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            34799999999999999999999999998 6677888776 456777888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++ ..|++++++.. .+.|++||+.
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n  140 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC  140 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEe
Confidence            99999999999999 79999998876 5788888753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.4e-23  Score=168.79  Aligned_cols=114  Identities=25%  Similarity=0.445  Sum_probs=98.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.++.+.++....+.+++..+.++||||+|+++|..++..+++++|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            34799999999999999999999999998 77789999998888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++......++|++||+
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~  125 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIG  125 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence            99999999999999999999998876788988774

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.90  E-value=4.7e-23  Score=163.84  Aligned_cols=115  Identities=19%  Similarity=0.402  Sum_probs=101.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      .....+||+++|++|||||||+++|.++.+. .+.+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3456899999999999999999999999998 67778887765 567789999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++|||+++++||+++ ..|++.+.+.. .++|++||+.
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~n  135 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGL  135 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            9999999999999998 68999998776 5788887753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.90  E-value=6.4e-23  Score=160.75  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=101.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++ ...+.+++..+.+++||++|+++|..++..+++++|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            45799999999999999999999999988 6777888777 678888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +|||+++++||+.+..|+.++.+... .++|++||+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  119 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN  119 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence            99999999999999999999977653 5788877753

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=168.70  Aligned_cols=114  Identities=23%  Similarity=0.423  Sum_probs=96.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.++||||+|++++..++..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999999998 77788898998889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++......++|++||+
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~  137 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCG  137 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            99999999999999999999998877788988775

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.90  E-value=6.7e-23  Score=159.79  Aligned_cols=113  Identities=18%  Similarity=0.397  Sum_probs=102.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999988 77889999999899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+.+..|+.++.+.. .++|++||+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~  120 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVG  120 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            9999999999999999999998876 578877665

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.90  E-value=2.7e-23  Score=163.19  Aligned_cols=116  Identities=9%  Similarity=0.155  Sum_probs=103.2

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      .....+||+++|++|||||||+++|.++.+. .+.++++.++ ...+.+++..+.+++||++|++++..++..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            3456899999999999999999999999988 6777887776 6788889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      +++|||+++++||+++..|+.++.+. ...++|++||+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  131 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN  131 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence            99999999999999999999999764 346788777753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=164.73  Aligned_cols=115  Identities=22%  Similarity=0.337  Sum_probs=93.9

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      .....+||+++|++|||||||+++|.++.|. .+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            3445799999999999999999999999988 6677777555 5677889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++|||+++++||+++. .|++++.... .++|++||+.
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~n  132 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGT  132 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            99999999999999997 7999999876 4788777753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1e-24  Score=173.26  Aligned_cols=115  Identities=21%  Similarity=0.459  Sum_probs=106.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.++.+.++....+.+++..+.++|||++|++++..++..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            34799999999999999999999999988 77778888998889999988999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++++......++|++||+.
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n  136 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN  136 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            999999999999999999999998877899888753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.90  E-value=2e-23  Score=162.84  Aligned_cols=104  Identities=25%  Similarity=0.490  Sum_probs=96.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC-eEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~-~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|++.++..+.+.+++ ..+.+++|||+|++++..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            45799999999999999999999999998 6778999999888898876 689999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                      ++|||+++++||+++..|+.++.++.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~  109 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVS  109 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.90  E-value=4.3e-23  Score=162.95  Aligned_cols=113  Identities=25%  Similarity=0.402  Sum_probs=100.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|.+.++ ...+.+++..+.+.+||++|+++|..++..+++++|+++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            34799999999999999999999999998 6777887766 456778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++ ..|+++++++. +++|++||+.
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~n  119 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGC  119 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEE
Confidence            99999999999999 78999998876 5789888753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=4.5e-23  Score=164.01  Aligned_cols=114  Identities=23%  Similarity=0.435  Sum_probs=106.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.++.|.++....+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999999988 77889999988888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++++|+++..|+.++.+....++|++||+
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~  135 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAG  135 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence            99999999999999999999999877788988775

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.90  E-value=2.1e-23  Score=161.03  Aligned_cols=112  Identities=24%  Similarity=0.512  Sum_probs=98.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            589999999999999999999999998 7778889898888888899899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||+++++||+++..|+.++.+....+.|+++|+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  115 (170)
T 1g16_A           83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVG  115 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            999999999999999999999887788987775

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.90  E-value=6.7e-23  Score=163.86  Aligned_cols=114  Identities=24%  Similarity=0.476  Sum_probs=105.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            4799999999999999999999999998 777888999988888999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||++++++|+++..|+.++......+.|++||+-
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~n  121 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN  121 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            99999999999999999999988767889887753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.90  E-value=1.1e-23  Score=168.73  Aligned_cols=115  Identities=13%  Similarity=0.181  Sum_probs=99.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-cchhhccCCcEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI  175 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~i  175 (215)
                      ...+||+++|++|||||||+++|.+..+. .+.++++.++..+.+.+++..+.+.+|||+|++++.. ++..|++++|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            34799999999999999999999866555 4556777788888888999999999999999998765 788899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      |+|||+++++||+++..|+.++..... .++|++||+.
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  138 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN  138 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEee
Confidence            999999999999999999999988764 5789887753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.90  E-value=4e-23  Score=160.96  Aligned_cols=115  Identities=23%  Similarity=0.414  Sum_probs=101.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            345799999999999999999999999988 7778999999888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      ++|||+++++||+++..|++++.....    .++|+++|+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~  123 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG  123 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence            999999999999999999999987654    578877765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.4e-23  Score=162.86  Aligned_cols=114  Identities=16%  Similarity=0.311  Sum_probs=101.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++||++|+++|..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            345799999999999999999999999998 6677777665 46677888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++|||+++++||+++. .|+.++.+.. +++|++||+.
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~n  130 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGT  130 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence            9999999999999998 8999999876 4688777753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.90  E-value=4.4e-23  Score=165.24  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      +....+||+++|++|||||||+++|.++.+. .+.++.+.++ ...+.+++..+.+.+|||+|++++..++..+++++|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            3455899999999999999999999999998 6667888776 6777778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      +++|||+++++||+.+..|+.++.+... .++|++||+
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  136 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG  136 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEE
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999999999999999987643 578877775

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.90  E-value=6.3e-23  Score=165.25  Aligned_cols=112  Identities=20%  Similarity=0.400  Sum_probs=98.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|++.++ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            45799999999999999999999999998 6777887655 466778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++. .|+++++.+. +++|++||+
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  120 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVG  120 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            999999999999997 8999999886 478877775

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.90  E-value=9.9e-23  Score=158.81  Aligned_cols=114  Identities=12%  Similarity=0.174  Sum_probs=101.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+||++|++++..++..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            345799999999999999999999999988 67778887765 7778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHh-HCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARK-WNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa  211 (215)
                      ++|||+++++||+++..|+.++.+ ....++|++||+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  121 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG  121 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEE
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            999999999999999999999954 445678877775

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.90  E-value=5e-23  Score=158.67  Aligned_cols=112  Identities=17%  Similarity=0.357  Sum_probs=103.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            4799999999999999999999999998 777888999998999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.... .+.|+++|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~  116 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEV-GDIPTALVQ  116 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            999999999999999999998876 567777665

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=6.3e-23  Score=162.21  Aligned_cols=115  Identities=23%  Similarity=0.481  Sum_probs=105.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.||||+|++++..++..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            356799999999999999999999999998 7778889999888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |+|||++++++|+++..|+.++.+... .++|++||+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~  128 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG  128 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Confidence            999999999999999999999987653 568877665

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.90  E-value=5.5e-24  Score=170.24  Aligned_cols=114  Identities=20%  Similarity=0.455  Sum_probs=101.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.+++..+.+.||||+|++++..++..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999999999988 66778888998899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++......++|++||+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~  145 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVG  145 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            99999999999999999999988877789988875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.89  E-value=7.5e-23  Score=158.89  Aligned_cols=113  Identities=17%  Similarity=0.254  Sum_probs=90.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~~~~~~~a~~ii  176 (215)
                      ..+||+++|++|||||||+++|.++.+....++.|.++..+.+.+++..+.+.+||++|++.  +..+...+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            46899999999999999999999999886667788888888899999999999999999998  6677788999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++.+.. ..++|++||+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~  118 (175)
T 2nzj_A           83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVG  118 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEE
Confidence            9999999999999999999998753 3578877765

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.89  E-value=1e-22  Score=156.81  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=99.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.+|.+..+ .+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999998 6777777665 4667788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||+++++||+++..|++++.+.. ..+.|+++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  115 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG  115 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEE
Confidence            999999999999999999998764 3578877765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=5.3e-23  Score=167.87  Aligned_cols=115  Identities=15%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVA  174 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~  174 (215)
                      ...+||+++|++|||||||+++|++..  |....+++|.+++.+.+.+++..+.+.+|||+|++. +..+...|++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            447999999999999999999999644  455556788898888999999999999999999987 56677888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|+|||++|++||+++..|+.++.+.. ..++|+|||+.
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgN  153 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN  153 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence            999999999999999999999987643 35789888753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.89  E-value=3.6e-23  Score=168.08  Aligned_cols=116  Identities=23%  Similarity=0.358  Sum_probs=105.9

Q ss_pred             CCCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037           95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus        95 ~~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      ......+||+++|++|||||||+++|+.+.+. .+.++.|.++....+.+++..+.+++|||+|++.+..++..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34456899999999999999999999988887 66788899999889999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|||+++++||+++..|+.++.+.. .++|++||+
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~  126 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCG  126 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            9999999999999999999999999887 578877775

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.89  E-value=2.3e-22  Score=157.54  Aligned_cols=112  Identities=21%  Similarity=0.420  Sum_probs=99.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            46799999999999999999999999998 6667776554 566788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++. .|+..+.+... +.|++||+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~  116 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG  116 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEE
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence            999999999999997 79999998764 78877765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=1.4e-22  Score=162.66  Aligned_cols=113  Identities=23%  Similarity=0.498  Sum_probs=104.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   98 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL   98 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999988 777899999988899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |||++++.+|+.+..|+.++......++|++||+
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~  132 (213)
T 3cph_A           99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVG  132 (213)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence            9999999999999999999998876778987775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.89  E-value=1.6e-22  Score=159.18  Aligned_cols=114  Identities=22%  Similarity=0.406  Sum_probs=102.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE-EEEEEECCe---------EEEEEEEecCCCCCCCccch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~-~~~v~~~~~---------~~~l~i~Dt~G~e~~~~~~~  166 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++. .+.+..++.         .+.+.+||++|++++..++.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            45799999999999999999999999988 77788898887 667777766         79999999999999999999


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      .+++++|++|+|||++++.+|+++..|+.++..... .++|++||+
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  134 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG  134 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEE
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            999999999999999999999999999999988775 678877765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.89  E-value=7.9e-23  Score=159.51  Aligned_cols=114  Identities=22%  Similarity=0.376  Sum_probs=90.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++.+.++....+.++ +..+.+.+||++|++++..++..+++++|++
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   85 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC   85 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence            34799999999999999999999999988 777888889888888887 6678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      ++|||++++++|+++..|+.++.....    .++|++||+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  125 (182)
T 1ky3_A           86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILG  125 (182)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEE
Confidence            999999999999999999999987653    578877765

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.89  E-value=1.4e-22  Score=156.72  Aligned_cols=113  Identities=13%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-cchhhccCCcEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  177 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~iil  177 (215)
                      .+||+++|++|||||||+++|.+..+. .+.++.+.++....+.+++..+.+.+||++|++++.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            489999999999999999999988877 5556667888888899999999999999999999876 77888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      |||+++++||+++..|+.++.+... .++|++||+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  117 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN  117 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEee
Confidence            9999999999999999999988764 4788887763

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.89  E-value=3.3e-22  Score=160.24  Aligned_cols=112  Identities=21%  Similarity=0.393  Sum_probs=99.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            35799999999999999999999999998 67778887765 45778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++++|+++ ..|++.+.+.. .++|++||+
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  136 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVG  136 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            99999999999999 68999998876 467877665

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.89  E-value=2e-22  Score=162.26  Aligned_cols=113  Identities=20%  Similarity=0.398  Sum_probs=97.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|+++.+. .+.++++ +.....+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            456799999999999999999999999998 6666665 44567778889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|||+++++||+++. .|+..+.+.. .+.|++||+
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  141 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVG  141 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            9999999999999997 8999999887 678877775

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.89  E-value=2.5e-22  Score=160.48  Aligned_cols=113  Identities=15%  Similarity=0.241  Sum_probs=94.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC-CCccchhhccCCcEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI  175 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-~~~~~~~~~~~a~~i  175 (215)
                      ..+||+++|++|||||||+++|++.  .|....+++|.+++.+.+.+++..+.+.+|||+|++. +..+...|++.+|++
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~   84 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY   84 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence            3699999999999999999999964  3455556788888888899999999999999999887 667888899999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ++|||++|++||+++..|+..+.+.. ..++|++||+
T Consensus        85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~  121 (192)
T 2cjw_A           85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG  121 (192)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence            99999999999999999999988764 3578888775

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2.8e-22  Score=161.39  Aligned_cols=112  Identities=21%  Similarity=0.406  Sum_probs=95.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++.++. ..+.+++..+.+.+|||+|++++..++..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            46799999999999999999999999998 66677777665 34778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSI-VGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i-~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||++++++|+++ ..|++.+.+.. +++|+++|+
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  136 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVA  136 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            99999999999999 68999998876 567777664

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.89  E-value=2e-22  Score=157.86  Aligned_cols=115  Identities=13%  Similarity=0.218  Sum_probs=99.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      ..+..+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            3456899999999999999999999999988 6666777655 4567788889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      +++|||++++++|+.+..|+.++.+... .++|++||+
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  130 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG  130 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999999999999999988764 478877765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.89  E-value=1.8e-22  Score=161.44  Aligned_cols=114  Identities=25%  Similarity=0.389  Sum_probs=103.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            34799999999999999999999999988 77788899999888999998999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC----CCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ----VTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~----~~~piIlVa  211 (215)
                      +|||++++++|+++..|+.++.....    .++|++||+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  124 (207)
T 1vg8_A           86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG  124 (207)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            99999999999999999999987653    467877765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.89  E-value=2.9e-23  Score=165.73  Aligned_cols=115  Identities=10%  Similarity=0.286  Sum_probs=76.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEECCe--EEEEEEEecCCCCCCCccchhhccCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA  172 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~~~~--~~~l~i~Dt~G~e~~~~~~~~~~~~a  172 (215)
                      ...+||+++|++|||||||+++|.++  .|. ++.+|++.++..+.+.+++.  .+.+.+|||+|++++..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            45799999999999999999999999  887 77788888888889999887  89999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEee
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFHI  212 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa~  212 (215)
                      |++|+|||+++++||+++..|+.++.....   .++|++||+-
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n  140 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN  140 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEE
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEE
Confidence            999999999999999999999999999876   6889887763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.89  E-value=4.3e-22  Score=157.37  Aligned_cols=114  Identities=11%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      .+..+||+++|++|||||||+++|.++.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   96 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF   96 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence            356799999999999999999999999888 5556666544 46778889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      ++|||+++.++|+++..|++++..... .++|++||+
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~  133 (190)
T 3con_A           97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG  133 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence            999999999999999999999988654 568877765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.89  E-value=3.8e-22  Score=153.06  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=99.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+. ...+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            4689999999999999999999999988 56666664 446778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+... .+.|+++|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  115 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG  115 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999999999999987653 578877765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.88  E-value=2.2e-22  Score=155.19  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .+||+++|++|||||||+++|.+..+....++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            5899999999999999999999877765556666555 567788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |+++++||+++..|+.++.+.. ..++|+++|+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n  114 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGN  114 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            9999999999999999998754 36788887753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.88  E-value=4e-23  Score=166.94  Aligned_cols=114  Identities=24%  Similarity=0.471  Sum_probs=102.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe----------EEEEEEEecCCCCCCCccch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~----------~~~l~i~Dt~G~e~~~~~~~  166 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.+|++.++..+.+.+++.          .+.++||||+|+++|..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            34799999999999999999999999998 67788899988888888776          79999999999999999999


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      .+++++|++|+|||++++++|+++..|+.++..... .++|++||+
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~  148 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG  148 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence            999999999999999999999999999999877654 678877765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.88  E-value=4.8e-22  Score=157.23  Aligned_cols=111  Identities=23%  Similarity=0.429  Sum_probs=100.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeE------------------------------
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------  147 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~------------------------------  147 (215)
                      ..+||+++|++|||||||+++|+++.+. .+.++++.++....+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            4799999999999999999999999998 777899999988888887765                              


Q ss_pred             -------EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       148 -------~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                             +.+.+|||+|++++..++..+++.+|++++|||++++++|+++..|+.++.+..+  .|+++|+
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~  154 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVA  154 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEE
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEE
Confidence                   8999999999999999999999999999999999999999999999999988764  7877765

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.88  E-value=4.7e-22  Score=158.68  Aligned_cols=115  Identities=13%  Similarity=0.208  Sum_probs=101.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI  175 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~i  175 (215)
                      ....+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            455799999999999999999999999988 6666777555 46678889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       176 ilvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      ++|||+++++||+.+..|+.++.+... .++|++||+-
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  127 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN  127 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            999999999999999999999988764 5788877753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.88  E-value=9.7e-23  Score=159.42  Aligned_cols=112  Identities=20%  Similarity=0.394  Sum_probs=84.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.+|++..+. ..+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            44799999999999999999999999988 66677775553 34566778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++. .|++++.+.. .++|++||+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  119 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG  119 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            999999999999997 7999999886 478877765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.88  E-value=4.6e-22  Score=152.75  Aligned_cols=113  Identities=13%  Similarity=0.218  Sum_probs=97.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +..+||+++|++|||||||++++.++.+. .+.++.+.++ ...+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            34799999999999999999999999988 6666777655 456678899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      +|||++++++|+.+..|+.++.+... .+.|+++|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  116 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVG  116 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            99999999999999999999988764 478877765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.88  E-value=1e-21  Score=154.27  Aligned_cols=112  Identities=12%  Similarity=0.218  Sum_probs=96.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++++ +.....+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4799999999999999999999999988 5555654 5555777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |||+++++||+.+..|+.++..... .+.|+++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~  116 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG  116 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            9999999999999999999988653 578887775

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.88  E-value=3.9e-22  Score=161.62  Aligned_cols=112  Identities=25%  Similarity=0.409  Sum_probs=80.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            45799999999999999999999999988 6666776554 566788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++. .|++++.+.. .++|++||+
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~  145 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVG  145 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEE
Confidence            999999999999997 7999998876 568877765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.88  E-value=1.8e-21  Score=155.21  Aligned_cols=115  Identities=23%  Similarity=0.423  Sum_probs=105.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||++++.+..+. .+.+|++.++....+.+++..+.+++||++|++++..++..+++++++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            34799999999999999999999999998 78889999998899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++..+|+++..|+.++.+....+.|+++|+.
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~n  142 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN  142 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence            999999999999999999998877666788777653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.87  E-value=1.1e-22  Score=160.73  Aligned_cols=115  Identities=14%  Similarity=0.137  Sum_probs=96.7

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc-----------cccceeeeEEEEE-EECCeEEEEEEEecCCCCCCC
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-----------LQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~-----------~~t~g~~~~~~~v-~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      .....+||+++|++|||||||+ +++.+.+. .+           .+|.+.++....+ .+++..+.+++|||+|+++|.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3456899999999999999999 56666666 42           3577888777666 678889999999999999999


Q ss_pred             ccchhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          163 DHVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit------~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .++..+++++|++|+|||++      +.++|+++..|+.+++.. ..++|++||+.
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~-~~~~piilv~N  143 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT-LDDVPIVIQVN  143 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC-TTSSCEEEEEE
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc-cCCCCEEEEEE
Confidence            99999999999999999999      778999999999998543 36788888753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=8.7e-22  Score=156.87  Aligned_cols=112  Identities=11%  Similarity=0.203  Sum_probs=98.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.|. .+.++.+.++ ...+.+++..+.+++||++|+++ ..++..+++++|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            45799999999999999999999999998 6667777665 46678889999999999999998 778889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      +|||+++++||+++..|++++.+.. ..++|++||+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~  139 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG  139 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEE
Confidence            9999999999999999999998764 3578887775

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.87  E-value=3e-22  Score=158.76  Aligned_cols=110  Identities=18%  Similarity=0.305  Sum_probs=94.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.+|++.++..  +.  ...+.+++||++|++++..++..+++++|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            45799999999999999999999999998 777888887652  33  33578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      +|||++++++|+.+..|+.++.+.. ..++|++||+
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  131 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG  131 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEE
Confidence            9999999999999999999887642 2578877765

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.87  E-value=7.8e-22  Score=158.18  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++++..+.+|.+.+.  ..+.+++  +.+++|||+|++++..++..|++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            346899999999999999999999999887777887664  4666776  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||+++++||+++..|+.++.+.. ..++|++||+.
T Consensus        99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  134 (198)
T 1f6b_A           99 LVDCADHERLLESKEELDSLMTDETIANVPILILGN  134 (198)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEE
Confidence            999999999999999999987653 35788877753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=155.42  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=93.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..+||+++|++|||||||+++|.++. +. .+.+|.+.  ....+.+++  +.+.+|||+|++++..++..+++++|+++
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            46999999999999999999999988 55 66677774  345666664  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ---VTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~---~~~piIlVa  211 (215)
                      +|||+++++||+++..|+.++.+...   .++|++||+
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~  133 (190)
T 2h57_A           96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA  133 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence            99999999999999999999877543   468877765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.87  E-value=1.1e-22  Score=160.81  Aligned_cols=111  Identities=13%  Similarity=0.356  Sum_probs=87.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC-CccccceeeeEEEEEEE---CCeEEEEEEEecCCCCCCCccchhhccCCc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV  173 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~~t~g~~~~~~~v~~---~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~  173 (215)
                      .+||+++|++|||||||+++|++.  .|. .+.+|+|.++..+.+.+   ++..+.+++|||+|+++|..+++.|+++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  565 56788899988776655   346789999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~-~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|||++++ .||+++..|+.++.... .+.|++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~  119 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVG  119 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEE
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEE
Confidence            99999999997 58999999999998775 578988884

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.87  E-value=2.9e-21  Score=147.78  Aligned_cols=112  Identities=12%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||++++.++.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            4689999999999999999999999888 5556666444 5677788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa  211 (215)
                      |||++++++|+++..|++++..... .+.|+++|.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~  115 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG  115 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence            9999999999999999999988653 468877765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.87  E-value=8.7e-22  Score=154.98  Aligned_cols=110  Identities=17%  Similarity=0.251  Sum_probs=94.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++++..+.+|.|.++  ..+.+++  +.+++||++|++++..++..+++++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            346999999999999999999999999976677888654  4555655  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+.. ..++|++||+
T Consensus        95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  129 (181)
T 2h17_A           95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA  129 (181)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEE
Confidence            999999999999999999887643 3568877765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1.8e-21  Score=150.18  Aligned_cols=111  Identities=14%  Similarity=0.245  Sum_probs=97.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.+. .+.++.+.++. ..+..++..+.+.+|||+|++++..++..+++++|++++|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            689999999999999999999999988 66677776553 5567788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      ||++++++|+++..|+.++.+...  .+.|+++|+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~  116 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG  116 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEE
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence            999999999999999999887642  467877665

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.86  E-value=8e-22  Score=156.50  Aligned_cols=111  Identities=20%  Similarity=0.280  Sum_probs=90.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      ....+||+++|++|||||||+++|+++.+..  +.+|+|..+.  .+  ++..+.++||||+|++++..++..+++++|+
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   89 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA   89 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence            3457899999999999999999999999874  4678885543  33  3456889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCC--------CCceEEEEe
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ--------VTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~--------~~~piIlVa  211 (215)
                      +|+|||+++++||+++..|+.++.+...        .++|+|||+
T Consensus        90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~  134 (199)
T 4bas_A           90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFA  134 (199)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEE
T ss_pred             EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEE
Confidence            9999999999999999999998866421        268877775

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.86  E-value=2.7e-21  Score=153.91  Aligned_cols=111  Identities=14%  Similarity=0.089  Sum_probs=94.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++++..+.+|.+.+  ...+.+++  +++++|||+|++++..++..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            44689999999999999999999999988777787765  35667776  889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  132 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGN  132 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEE
Confidence            999999999999999999987643 35688777753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=6.6e-22  Score=159.89  Aligned_cols=116  Identities=22%  Similarity=0.347  Sum_probs=100.9

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      ....+||+++|++|||||||+++|+++.+. .+.++.+.++....+..+ +..+.+.+|||+|++++..++..+++++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            345799999999999999999999999988 666788877776666554 455999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|+|||++++.||+++..|+.++......+.|++||+.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~n  125 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN  125 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence            99999999999999999999999988777788877753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.86  E-value=1e-21  Score=151.14  Aligned_cols=107  Identities=21%  Similarity=0.306  Sum_probs=91.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +||+++|++|||||||+++|.++.|..+.+|.+...  ..+..  ..+.+++|||+|++++..++..+++++|++++|||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999999987778887443  34443  45789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037          181 LTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH  211 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa  211 (215)
                      +++++||+++..|+.++... ...+.|++||+
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  108 (164)
T 1r8s_A           77 SNDRERVNEAREELMRMLAEDELRDAVLLVFA  108 (164)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEE
Confidence            99999999999999998664 23578887775

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.86  E-value=4.4e-21  Score=153.46  Aligned_cols=114  Identities=23%  Similarity=0.452  Sum_probs=102.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||++++.+..|. .+.++.|.++....+.++|..+.+++||++|++++..+...++++++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            3689999999999999999999999998 777888889888899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||+++..+|+++..|+.++......+.|+++|+.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~n  118 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN  118 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence            99999999999999999999877656788877654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.86  E-value=2.1e-21  Score=155.02  Aligned_cols=113  Identities=21%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEE--E-CCeEEEEEEEecCCCCCCCccc---hhhcc
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACK  170 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~--~-~~~~~~l~i~Dt~G~e~~~~~~---~~~~~  170 (215)
                      ....+||+++|++|||||||++++.+ .|... ++.+.++..+.+.  + ++..+.+++|||+|+++|..+.   ..+++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN-ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS-CCCGG-GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh-cCCCc-ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            34579999999999999999997765 44422 4555554444333  3 3677899999999999998777   89999


Q ss_pred             CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          171 DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       171 ~a~~iilvfdit~~--~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++|++|+|||++++  ++++.+..|+.++.+.. .++|++||+.
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~n  137 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIH  137 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred             cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEe
Confidence            99999999999998  78888888888886655 5789888763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.86  E-value=3.8e-21  Score=148.69  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=94.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.++.+..+.+|.+...  ..+.++  .+.+++|||+|++++..++..+++++|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            36899999999999999999999999987778887554  455555  57899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ||+++++||+++..|+.++.+.. ..+.|++||+
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  115 (171)
T 1upt_A           82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFA  115 (171)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEE
Confidence            99999999999999998886643 2578877775

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.4e-21  Score=152.17  Aligned_cols=110  Identities=17%  Similarity=0.249  Sum_probs=91.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.++++..+.+|.|.+.  ..+.+++  +.+++|||+|++++..++..+++++|++++|
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   90 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   90 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            46899999999999999999999999886677877554  4555654  8899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+.. ..+.|++||+.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  125 (187)
T 1zj6_A           91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN  125 (187)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEE
Confidence            99999999999999999997753 25688777753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=2.6e-21  Score=153.52  Aligned_cols=112  Identities=13%  Similarity=0.207  Sum_probs=97.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|.++.+. .+.++.+..+. ..+..++..+.+.+|||+|++++..++..+++++|++++
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL   85 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence            4689999999999999999999999988 66677775553 566778889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      |||++++++|+++..|+..+.+...  .++|++||+
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~  121 (199)
T 2gf0_A           86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG  121 (199)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            9999999999999999988877543  467877765

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.85  E-value=1.9e-21  Score=153.49  Aligned_cols=110  Identities=18%  Similarity=0.269  Sum_probs=94.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.++.+..+.+|.|..  .+.+.++  .+.+++|||+|++++..++..+++++|++++|
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   90 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence            4699999999999999999999998776777788854  3455665  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+. ...+.|++||+.
T Consensus        91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N  125 (181)
T 1fzq_A           91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN  125 (181)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred             EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence            9999999999999999988654 235788877753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.85  E-value=4.3e-21  Score=152.97  Aligned_cols=110  Identities=20%  Similarity=0.293  Sum_probs=89.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.+++|..+.+|.+..  ...+..+  .+.+++|||+|++++..++..+++++|++++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  102 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIF  102 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            45799999999999999999999999988767777744  3445544  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+.. ..+.|++||+
T Consensus       103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~  137 (192)
T 2b6h_A          103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFA  137 (192)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEE
Confidence            999999999999999999986543 3578887775

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.84  E-value=1.1e-20  Score=148.63  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=93.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.+++...+.+|.+.+.  ..+.++  .+.+++|||+|++++..++..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            347999999999999999999999988447778888553  455555  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  126 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA  126 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEE
Confidence            999999999999999999887643 3578877775

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.84  E-value=8.4e-21  Score=149.96  Aligned_cols=109  Identities=22%  Similarity=0.309  Sum_probs=94.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.++++..+.+|.+...  ..+..+  .+.+++|||+|++++..++..+++++|++++|
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   96 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV   96 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence            47899999999999999999999998887777877543  445555  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus        97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  130 (189)
T 2x77_A           97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFA  130 (189)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEE
Confidence            99999999999999999887643 3578887775

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=1e-20  Score=148.17  Aligned_cols=110  Identities=21%  Similarity=0.278  Sum_probs=91.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||++++.++++..+.+|.+...  ..+.+++  +.+++||++|++++..++..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            347999999999999999999999998876677887543  4555554  789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||+++++||+++..|+.++.+.. ..+.|+++|+
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~  126 (183)
T 1moz_A           92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA  126 (183)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEE
Confidence            999999999999999999987754 3678877775

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.83  E-value=6.8e-20  Score=156.54  Aligned_cols=110  Identities=22%  Similarity=0.420  Sum_probs=98.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|+++.+. .+.+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus       155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            489999999999999999999999998 6666776554 56778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||++++.||+++. .|++.+..... ++|++||+
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~  266 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG  266 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEE
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEE
Confidence            9999999999997 79999988764 78877765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.83  E-value=2.6e-21  Score=161.68  Aligned_cols=115  Identities=11%  Similarity=0.121  Sum_probs=89.6

Q ss_pred             ceeeeEEEEcCC---------CCCHHHHHHHHhc---CCCC-Cccccc-eeeeEEEEEE--------------ECCeEEE
Q 028037           98 LVSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA  149 (215)
Q Consensus        98 ~~~~KIvllGd~---------~vGKTSLi~r~~~---~~f~-~~~~t~-g~~~~~~~v~--------------~~~~~~~  149 (215)
                      ...+||+++|++         |||||||+++|++   +.|. .+.+++ +.++..+.+.              +++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            346999999999         9999999999999   5666 566665 5665544333              4678899


Q ss_pred             EEEEe-----------------------cCCCCCCCccchhhcc---------------------CCcEEEEEEeCCCh-
Q 028037          150 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR-  184 (215)
Q Consensus       150 l~i~D-----------------------t~G~e~~~~~~~~~~~---------------------~a~~iilvfdit~~-  184 (215)
                      ++|||                       ++|+++|..++..+|+                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       8899999999999998                     89999999999999 


Q ss_pred             -hhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          185 -CTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       185 -~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                       +||+++..|+.++.+. ...++|++||+.
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~N  206 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLT  206 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCEEEEEE
Confidence             9999999999999876 345788887763

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.83  E-value=1.6e-20  Score=162.51  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=82.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---cchhhccCCcE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA  174 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---~~~~~~~~a~~  174 (215)
                      ||+++|++|||||||++++.++.+..    +.+|+|.++..    ++ ..++++||||+|||+|..   .++.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            79999999999999999988765543    45788888753    23 458999999999999974   46899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       175 iilvfdit~~--~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|+|||++++  ++++.+..|++++.+.. +++|++||+
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvg  113 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLI  113 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEEC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEE
Confidence            9999999998  44444445566666654 578988775

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.72  E-value=4.5e-22  Score=159.51  Aligned_cols=112  Identities=21%  Similarity=0.422  Sum_probs=97.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            45799999999999999999999999988 6666766544 456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTSRCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++++||+++. .|+..+....+ ++|++||+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~  141 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG  141 (204)
Confidence            999999999999997 89999987653 67877664

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.81  E-value=8.3e-20  Score=147.08  Aligned_cols=112  Identities=13%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCe-EEEEEEEecCCCCCCCc-cchhhccCCcEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI  175 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~-~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~i  175 (215)
                      ...+||+++|++|||||||+++|+++.|...+++++.++..  +.+++. .+.++||||+|+++|.. ++..|++++|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            34789999999999999999999999998555666666653  566654 68999999999999987 888999999999


Q ss_pred             EEEEeCCChh-hHHHHHH-HHHHHHhH--CCCCceEEEEe
Q 028037          176 LFMFDLTSRC-TLNSIVG-WYSEARKW--NQVTKQSLFFH  211 (215)
Q Consensus       176 ilvfdit~~~-Sf~~i~~-wl~~i~~~--~~~~~piIlVa  211 (215)
                      |+|||+++.+ ++..+.. |.+.+...  ...++|++||+
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~  122 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC  122 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEE
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEE
Confidence            9999999964 5777665 44444442  34578887775

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.3e-19  Score=156.96  Aligned_cols=110  Identities=21%  Similarity=0.279  Sum_probs=88.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++.|....+|++.++.  .+..  ..++++||||+|+++|..++..+++++|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            3578999999999999999999999998866678887654  3333  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      |||++++++|+.+..|+.++.+.. ..++|+|||+
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~  273 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA  273 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEE
Confidence            999999999999998887775533 3578888775

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.80  E-value=2.8e-19  Score=153.36  Aligned_cols=109  Identities=19%  Similarity=0.283  Sum_probs=89.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC-----Cccchhhcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-----~~~~~~~~~  170 (215)
                      .+||+++|++|||||||+++|+++  .+.  .+.+|++.++..  +.+++ .+.+++|||+|++++     ..++..+++
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            689999999999999999999988  343  244577777653  44444 689999999999998     788999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHH---HhHCCCCceEEEEee
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEA---RKWNQVTKQSLFFHI  212 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i---~~~~~~~~piIlVa~  212 (215)
                      ++|++|+|||+++++||+++..|.+.+   .... +++|++||+.
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~-~~~piilv~N  123 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYS-PDAKIFVLLH  123 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred             cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhC-CCCeEEEEEe
Confidence            999999999999999999998775555   4443 5789888764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=2.2e-18  Score=134.06  Aligned_cols=105  Identities=10%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.++.+. .+.++++.++....+.+++.  .+.+|||+|+++|..++..++..+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            34789999999999999999999999988 66667776776677777775  5679999999999999999999999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          177 FMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|||+++   .++++.+    ..+   ...++|++||+
T Consensus        84 ~v~d~~~~~~~~~~~~l----~~~---~~~~~p~ilv~  114 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAI----NHA---KAANVPIIVAI  114 (178)
T ss_dssp             EEEETTCCCCHHHHHHH----HHH---GGGSCCEEEEE
T ss_pred             EEEECCCCCcHHHHHHH----HHH---HhCCCCEEEEE
Confidence            9999999   4444433    222   22467777665

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.77  E-value=5.6e-18  Score=131.47  Aligned_cols=105  Identities=13%  Similarity=0.074  Sum_probs=79.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhcc-
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIACK-  170 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~~-  170 (215)
                      ..+||+++|++|||||||+++|.+..+. .+.++++.+.....+.+++  ..+++|||+|++++..      +...|++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            3689999999999999999999998876 6666666666666677765  5799999999998863      4466775 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 -~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                       ++|++++|||.++.+   +...|+.++.+.   +.|+++|+
T Consensus        80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~---~~p~ilv~  115 (165)
T 2wji_A           80 EKPDLVVNIVDATALE---RNLYLTLQLMEM---GANLLLAL  115 (165)
T ss_dssp             HCCSEEEEEEETTCHH---HHHHHHHHHHHT---TCCEEEEE
T ss_pred             CCCCEEEEEecCCchh---HhHHHHHHHHhc---CCCEEEEE
Confidence             899999999999855   445688887653   57777664

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.77  E-value=2.6e-18  Score=134.57  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~  169 (215)
                      .+||+++|++|||||||+++|.+..+.  ...+++..++....+.+++.  .+.+|||+|++++....        ..++
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            579999999999999999999988753  44455566777778888874  47899999998754321        2468


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++|++++|||++++.||+ ...|++++.+....++|++||+
T Consensus        82 ~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~  122 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVR  122 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEE
T ss_pred             HhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEE
Confidence            9999999999999999987 4589998888776678877765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=1.4e-18  Score=140.16  Aligned_cols=105  Identities=14%  Similarity=0.125  Sum_probs=87.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC--
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--  171 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~--  171 (215)
                      ...+||+++|++|||||||+++|.++.+..    +.++++.++         ..+.+.+|||+|++++...+..|+++  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            346899999999999999999999988763    333444333         45679999999999999999999887  


Q ss_pred             --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----CCCCceEEEEe
Q 028037          172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQVTKQSLFFH  211 (215)
Q Consensus       172 --a~~iilvfdit-~~~Sf~~i~~wl~~i~~~----~~~~~piIlVa  211 (215)
                        +|++|+|||++ ++++|+.+..|+.++...    ...++|++||.
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  127 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC  127 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred             ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEE
Confidence              89999999999 999999999999988765    34678877765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.8e-18  Score=135.60  Aligned_cols=105  Identities=14%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccC--
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--  171 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~----~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~--  171 (215)
                      ...+||+++|++|||||||++++.++.+...    .++.+.+         ...+.+.+|||+|++.+...+..++.+  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C---------CCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee---------ecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            3468999999999999999999999887532    2222222         245678999999999999888888876  


Q ss_pred             --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----CCCCceEEEEe
Q 028037          172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----NQVTKQSLFFH  211 (215)
Q Consensus       172 --a~~iilvfdit-~~~Sf~~i~~wl~~i~~~----~~~~~piIlVa  211 (215)
                        +|++++|||++ +.++|+++..|+.++...    ...++|++||+
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~  163 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC  163 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEE
Confidence              89999999999 999999999999888654    33578887775

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.74  E-value=1.8e-17  Score=130.31  Aligned_cols=107  Identities=14%  Similarity=0.112  Sum_probs=85.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhc
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC  169 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~  169 (215)
                      .+..+||+++|++|||||||+++|.++.+. .+.+++..+.....+..++  ..+++|||+|++++.      .+...|+
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            346799999999999999999999998776 6667666677667777765  679999999999885      3456666


Q ss_pred             c--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 K--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~--~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .  .++++++|+|.++   +++...|+.++..   .+.|+++|.
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~  119 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLAL  119 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEE
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEE
Confidence            5  4999999999875   6677889988876   357777664

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.71  E-value=2.2e-18  Score=157.98  Aligned_cols=114  Identities=21%  Similarity=0.371  Sum_probs=87.8

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEE------EEE--CCeEEEEEEEecCCCCCCCccch
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVP  166 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~------v~~--~~~~~~l~i~Dt~G~e~~~~~~~  166 (215)
                      .....+||+++|++|||||||++++.++.|. .+.+|+|.++..+.      +.+  ++..+.+.+||++|++.|..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            3466899999999999999999999999998 77789998887552      222  34568999999999999999999


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .+++++|++|+|||+++.   +.+..|+.++..+. .+.|+|||+..
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK  159 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNK  159 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECC
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEEC
Confidence            999999999999998764   66788999999887 46888887643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.69  E-value=1.1e-16  Score=130.65  Aligned_cols=110  Identities=18%  Similarity=0.200  Sum_probs=75.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC---------ccchhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~---------~~~~~~  168 (215)
                      ..+||+++|++|||||||+++|+++.+. ...+....++....+..++  ..+.||||+|+....         .....+
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  105 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL  105 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence            4689999999999999999999999886 3333222333333333343  679999999994311         112345


Q ss_pred             ccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +..+|++|+|||++++.||+.  ...|+.++.... .+.|++||+
T Consensus       106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~  149 (228)
T 2qu8_A          106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGF  149 (228)
T ss_dssp             HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEE
T ss_pred             hccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEE
Confidence            788999999999999999863  236777776543 467877764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.68  E-value=1.5e-16  Score=121.41  Aligned_cols=105  Identities=19%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC-------CccchhhccC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~~~  171 (215)
                      .||+++|++|||||||+++|.++.+.  ...++...++....+..++.  .+.+|||+|++.+       ......++++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999998764  34445555666667777664  6889999999874       3344567899


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|++++|||.++..++..  .|+.++.+.  .+.|+++|+
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~  115 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVA  115 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEE
Confidence            999999999999755432  333222222  357776665

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.67  E-value=1.4e-17  Score=130.80  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=81.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC-----------CCCCCccchhh
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA  168 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G-----------~e~~~~~~~~~  168 (215)
                      +||+++|++|||||||+++|.++.|. .+.+++..+.  ..+..+    .+.+|||+|           ++.+..++..|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            69999999999999999999999988 5555444333  334443    689999999           66677778888


Q ss_pred             ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHh-HCCCCceEEEEe
Q 028037          169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARK-WNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~-a~~iilvfdit~~~Sf~~i-~~wl~~--------i~~-~~~~~~piIlVa  211 (215)
                      +++ ++++++||+++|.+||+++ ..|..+        +.+ ....++|+++|+
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~  129 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAV  129 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEe
Confidence            888 9999999999999999998 678763        222 223568877765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.66  E-value=7.8e-17  Score=127.29  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccchh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~~~  167 (215)
                      ..+||+++|++|||||||+++|+++.|. .+.++.+.+.......+++   ++.+|||+|          ++.+..+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            4689999999999999999999999876 5555665554444445544   589999999          6777777888


Q ss_pred             hccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEe
Q 028037          168 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       168 ~~~~a---~~iilvfdit~~~Sf~~i~--~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++.+   |++++|||+++..++....  .|+.+      .+.|+++|.
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~------~~~p~i~v~  141 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY------YGIPVIVIA  141 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEEE
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence            88877   9999999999998888754  44432      456766664

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.63  E-value=3.6e-15  Score=124.83  Aligned_cols=107  Identities=16%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc------chhhc-
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC-  169 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~------~~~~~-  169 (215)
                      ...+||+++|++|||||||+++|.+..+. ...+.+..+.....+..+  ...+.+|||+|++.+...      ...|+ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            34789999999999999999999998876 555655555444444444  378999999999988763      35665 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          170 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       170 -~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                       .++|++++|||.++.++.   ..|..++.+.   ++|+++|..
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~N  118 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMT  118 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEE
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEE
Confidence             589999999999997654   3477776653   578777654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.62  E-value=1.6e-15  Score=127.00  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=82.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----------cchhhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC  169 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~----------~~~~~~  169 (215)
                      .||+++|++|||||||+++|.+..+. ...+++..+.....+..++.  .+.+|||+|+..+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999999998776 66677777777777777765  789999999988764          556677


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          170 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       170 --~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                        .++|++++|+|.++.+++..+..|+.+      .++|+++|..
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~------~~~pvilv~N  118 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFE------LGKPVVVALN  118 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTT------SCSCEEEEEE
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHH------cCCCEEEEEE
Confidence              899999999999998777666555433      3578777654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.60  E-value=2.5e-15  Score=128.82  Aligned_cols=110  Identities=13%  Similarity=0.109  Sum_probs=82.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC----------ccc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHV  165 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~----------~~~  165 (215)
                      ...-.|+++|.+|||||||++++++..+..  ..+.+..+.....+..+ ...++.+|||+|+.++.          ...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            346799999999999999999999988762  22212122222222332 25789999999998765          455


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+++++|++++|+|.++..++++...|++.+...   ++|+++|.
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~  129 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVI  129 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEE
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEE
Confidence            67789999999999999999999999999998773   46766654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.60  E-value=1.5e-15  Score=127.02  Aligned_cols=110  Identities=17%  Similarity=0.172  Sum_probs=81.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc------
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------  170 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~------  170 (215)
                      ..+||+++|+.|||||||+++|++..+.  ...+.+........+..++  ..+.||||+|++++......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            4799999999999999999999998863  3333333344444455555  47999999999998877666664      


Q ss_pred             ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCC--ceEEEEe
Q 028037          171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQVT--KQSLFFH  211 (215)
Q Consensus       171 ---~a~~iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~--~piIlVa  211 (215)
                         ++|++++|+|+++.. |... ..|++.+.+..+.+  .|+++|.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~  158 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVL  158 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEE
Confidence               889999999998765 5555 48888888765443  3665553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.60  E-value=4.9e-15  Score=124.97  Aligned_cols=106  Identities=14%  Similarity=0.062  Sum_probs=79.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc----------chh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~----------~~~  167 (215)
                      ..+||+++|.+|||||||+++|.+..+. .+.+++..+.....+..++  ..+.+|||+|+..+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999999998876 6666666666666666655  45788999999987732          233


Q ss_pred             hc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          168 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       168 ~~--~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+  .++|++++|+|.++.+++..+..|+.+.      ++|+++|..
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~N  120 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALN  120 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEE
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEE
Confidence            33  6999999999999977665555554443      577777653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.60  E-value=2.3e-15  Score=118.29  Aligned_cols=105  Identities=12%  Similarity=0.112  Sum_probs=76.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccchh
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI  167 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~~~  167 (215)
                      ...+||+++|++|||||||+++|+++.+..+.++.+.+........+.   ++.+|||+|          ++.+..+...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            346899999999999999999999998665556665554433333332   477999999          6667777788


Q ss_pred             hccCC---cEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          168 ACKDA---VAILFMFDLTSRCT--LNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       168 ~~~~a---~~iilvfdit~~~S--f~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++.+   +++++|+|.++..+  +..+..|+.+.      ++|+++|.
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~  140 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVL  140 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEE
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEE
Confidence            88776   99999999988644  34444666543      57777664

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.59  E-value=3.2e-15  Score=126.22  Aligned_cols=104  Identities=18%  Similarity=0.071  Sum_probs=78.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------ccchhhcc--
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK--  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------~~~~~~~~--  170 (215)
                      .+||+++|++|||||||+++|.+..+. ...+.+  ++..+...++. ...+++|||+|++.+.      .+...|+.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            579999999999999999999987654 555533  33334445555 6789999999999886      35567775  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ++|++++|||.++.+++   ..|..++.+   .++|+++|..
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~N  115 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALN  115 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEE
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEE
Confidence            69999999999987654   457766665   3578777654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.57  E-value=1.8e-14  Score=120.95  Aligned_cols=107  Identities=16%  Similarity=0.083  Sum_probs=83.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc------cchhhc--
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--  169 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~------~~~~~~--  169 (215)
                      ..+||+++|++|||||||++++.+..+. ...++++.+.....+..++.  .+.+|||+|+..+..      +...|+  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            4689999999999999999999998886 66677777777777777664  489999999998876      566666  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      .++|++++|+|.++.+   ....|..++....  ..|+++|..
T Consensus        80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~N  117 (271)
T 3k53_A           80 GNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLN  117 (271)
T ss_dssp             TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEE
T ss_pred             cCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEE
Confidence            6899999999999863   3445555555432  277776643

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.56  E-value=1.8e-14  Score=123.32  Aligned_cols=108  Identities=16%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCCCC--------Cccch
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVP  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~--------~~~~~  166 (215)
                      ....+|+++|.+|||||||+++|++..+.  ...+ |+. +.....+.  ....++.+|||+|+.+.        .....
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr-~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~   81 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTR-KRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVY   81 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCcee-EEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHH
Confidence            45678999999999999999999998875  2222 332 22112222  23578999999999874        34456


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl-~~i~~~~~~~~piIlVa  211 (215)
                      .+++++|++++|||.+++.+..  ..|+ +.+++.. .+.|+++|.
T Consensus        82 ~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~  124 (301)
T 1wf3_A           82 EALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVG  124 (301)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEE
T ss_pred             HHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEE
Confidence            7789999999999999876544  4554 5666553 457766654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.56  E-value=7.5e-15  Score=123.19  Aligned_cols=112  Identities=14%  Similarity=0.061  Sum_probs=77.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchh---------hc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI---------AC  169 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~---------~~  169 (215)
                      ..+||+++|++|+|||||++++++..+....++.+.......+.++.....+.||||+|++++..+...         .+
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~  117 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLD  117 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhc
Confidence            479999999999999999999998886422222222222233333334578999999999887654332         13


Q ss_pred             cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCC--ceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQVT--KQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i-~~wl~~i~~~~~~~--~piIlVa  211 (215)
                      +++|++++|||++.. +|... ..|++.+.+..+.+  .|+++|.
T Consensus       118 ~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~  161 (270)
T 1h65_A          118 KTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVAL  161 (270)
T ss_dssp             CEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred             CCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEE
Confidence            479999999999764 46554 48888887765433  5665553

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.55  E-value=8.7e-15  Score=132.62  Aligned_cols=108  Identities=14%  Similarity=0.218  Sum_probs=63.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~  169 (215)
                      .+||+++|++|||||||+++|.+.+.  ....+++..++....+.+++  +.+.+|||+|++++....        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            58999999999999999999998864  35556666677777777876  569999999998866443        4478


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++|++++|||.+++.+++++..|.+.+....  +.|+++|.
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~  350 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVA  350 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEE
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEE
Confidence            99999999999999999875444433333322  57876654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.55  E-value=4.8e-14  Score=117.11  Aligned_cols=112  Identities=13%  Similarity=0.062  Sum_probs=73.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Ccccc-ceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch--------
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------  166 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~~~t-~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~--------  166 (215)
                      ...+||+++|.+|||||||++++++.. +. ...++ +..+.....+..++  ..+.||||+|+..+.....        
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~   97 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR   97 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence            446899999999999999999999887 54 33333 34444444555555  5689999999877643322        


Q ss_pred             ---hhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 ---IACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ---~~~~~a~~iilvfdit~~~Sf-~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                         .+++++|++|+|||.++.... ..+..|+.++........++++++
T Consensus        98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~  146 (260)
T 2xtp_A           98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFT  146 (260)
T ss_dssp             HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred             HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEE
Confidence               267899999999999962222 223344444322111234566666

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.54  E-value=8.2e-15  Score=120.47  Aligned_cols=110  Identities=12%  Similarity=0.056  Sum_probs=71.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCCCC-----------CCc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SFD  163 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~-----------~~~  163 (215)
                      ...+||+++|++|||||||++++++..+. ...+  ++..++....+.+++  ..+.||||+|...           +..
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~  104 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR  104 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence            45799999999999999999999998876 4444  344455555666665  4689999999542           333


Q ss_pred             cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                      ....+++++|++|+|+|+++..+  ....|+..+.+..+  ...|++||.
T Consensus       105 ~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~  152 (239)
T 3lxx_A          105 CILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIF  152 (239)
T ss_dssp             HHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEE
T ss_pred             HHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEE
Confidence            44555678899999999986544  22344444433211  224655553

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.53  E-value=8.2e-15  Score=128.18  Aligned_cols=66  Identities=12%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ..++++||||+||++|+.++..||++++++|+|||++          +.++|+++..|++++.+.. ..++|+|||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvg  257 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFL  257 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence            6799999999999999999999999999999999999          8899999999999997643 2678988876

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.53  E-value=1.7e-14  Score=125.35  Aligned_cols=66  Identities=18%  Similarity=0.243  Sum_probs=59.0

Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      ..++++|||++||++++.+|..||++++++|+|||++          +.++|++...|+.++.... ..++|+||++
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~  235 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFL  235 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEE
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEE
Confidence            3588999999999999999999999999999999999          8899999999999987653 3678988876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.53  E-value=6.9e-15  Score=131.64  Aligned_cols=107  Identities=15%  Similarity=0.169  Sum_probs=77.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCC----------CCCCccch
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVP  166 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----------e~~~~~~~  166 (215)
                      ..+||+++|++|||||||+++++++++.  ...+++..+.....+..++.  .++||||+|+          |+|..+..
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence            4689999999999999999999998874  44555556666667777775  4899999998          33433333


Q ss_pred             -hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 -IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 -~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                       .+++.+|++++|||.++..++++. .|+..+..   .+.|+++|.
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~  293 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVV  293 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEE
Confidence             478899999999999999999886 58877765   346766654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.52  E-value=2.9e-14  Score=127.73  Aligned_cols=103  Identities=16%  Similarity=0.230  Sum_probs=69.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC---------Cccchhhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC  169 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~---------~~~~~~~~  169 (215)
                      -+|+++|.++||||||+++|+++++.  ...+.+..+.....+.+++.  .+++|||+|++..         ......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999988753  44555555666677777775  4789999998863         23456688


Q ss_pred             cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +++|++|+|||.++..++..  +..|+.+      .+.|++||+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~  117 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVA  117 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEE
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence            99999999999998766543  3344432      246766554

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.52  E-value=6e-15  Score=119.06  Aligned_cols=109  Identities=13%  Similarity=0.036  Sum_probs=72.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEEC-CeEEEEEEEecCCCC----------CCCccch
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDHVP  166 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~-~~~~~l~i~Dt~G~e----------~~~~~~~  166 (215)
                      ..+||+++|++|||||||+++|+++.+. ....+.+.........+. .....+.||||+|..          .+..+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            4689999999999999999999998742 222222222222233343 345679999999953          3345556


Q ss_pred             hhccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~---a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .|++.   +|++++|+|.++..+. .-..|++.+.+   .++|+++|.
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~  151 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLL  151 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEE
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEE
Confidence            67666   7789999999986442 23456666655   346766654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.49  E-value=2.8e-14  Score=127.51  Aligned_cols=108  Identities=12%  Similarity=0.019  Sum_probs=74.6

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc-------hh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI  167 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~-------~~  167 (215)
                      ....+||+++|+.++|||||+++|.+..+.  ...+.+..+...+.+.+++. ..+.+|||+|++.+..+.       ..
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHH
Confidence            344789999999999999999999998874  33444445566666777654 378999999999887653       44


Q ss_pred             hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       168 ~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++.++|++|+|||.+..+   ....|+.++++.   ++|+++|.
T Consensus       110 ~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~---~~piIvV~  147 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTP---YEDDVVNLFKEM---EIPFVVVV  147 (423)
T ss_dssp             HHTSCSEEEEECSSSCCH---HHHHHHHHHHHT---TCCEEEEC
T ss_pred             HHhcCCEEEEEEeCCChH---HHHHHHHHHHhc---CCCEEEEE
Confidence            788999999999994333   346777777665   57766654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.48  E-value=1.7e-14  Score=129.11  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC--------CCCccchhhccC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD  171 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e--------~~~~~~~~~~~~  171 (215)
                      ..||+++|.+|||||||+++|.+..+....++.|.........+.....++.+|||+|++        ++......++++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            469999999999999999999988775333344443222223333334579999999986        455566778999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +|++|+|+|.++..++..  .|+.++.+  ..+.|++||+
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~  118 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAV  118 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEE
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEE
Confidence            999999999999877654  34433322  2457777664

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.48  E-value=3e-13  Score=117.05  Aligned_cols=70  Identities=14%  Similarity=0.289  Sum_probs=58.5

Q ss_pred             EEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC-CCCceEE
Q 028037          140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN-QVTKQSL  208 (215)
Q Consensus       140 ~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit----------~~~Sf~~i~~wl~~i~~~~-~~~~piI  208 (215)
                      .+.++  .++++|||++||++++.+|..||++++++|+|||++          +.++|++...|++++.... ..++|++
T Consensus       161 ~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii  238 (327)
T 3ohm_A          161 PFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI  238 (327)
T ss_dssp             EEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred             EEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence            44444  488999999999999999999999999999999665          7888998888998887643 2678988


Q ss_pred             EEe
Q 028037          209 FFH  211 (215)
Q Consensus       209 lVa  211 (215)
                      |++
T Consensus       239 L~~  241 (327)
T 3ohm_A          239 LFL  241 (327)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.47  E-value=5.9e-14  Score=122.21  Aligned_cols=108  Identities=13%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCeEEEEEEEecCCC----CCCCccchhhccC--
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD--  171 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~~~~l~i~Dt~G~----e~~~~~~~~~~~~--  171 (215)
                      .+|+|+|.++||||||++++.+..+. ..++  |...++  ..+.+++ ...+.|||++|+    +++..+...|++.  
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~--g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNL--GMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCE--EEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceE--EEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            36889999999999999999987654 3333  333332  3455543 247899999995    4566676777654  


Q ss_pred             -CcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCC--CCceEEEEe
Q 028037          172 -AVAILFMFDLTS---RCTLNSIVGWYSEARKWNQ--VTKQSLFFH  211 (215)
Q Consensus       172 -a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~--~~~piIlVa  211 (215)
                       ++++|+|||+++   +++++++..|++++..+..  .+.|++||+
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~  281 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA  281 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEE
T ss_pred             hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEE
Confidence             999999999999   8999999999999998763  467766654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.46  E-value=5.4e-13  Score=116.34  Aligned_cols=110  Identities=14%  Similarity=0.143  Sum_probs=80.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------cchhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------~~~~~  168 (215)
                      ..++|+++|.+|||||||++++.+..+. ...+....+.....+..+  ...+.+|||+|...+..         ....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            3579999999999999999999988764 333322222222333333  36799999999876421         11234


Q ss_pred             ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ...+|++++|+|+++..  ++++...|+.++....+ +.|+++|.
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~  287 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI  287 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence            45799999999999988  88999999999988664 67877765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.46  E-value=1.8e-13  Score=119.62  Aligned_cols=71  Identities=14%  Similarity=0.258  Sum_probs=60.4

Q ss_pred             EEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhHC-CCCceEE
Q 028037          140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKWN-QVTKQSL  208 (215)
Q Consensus       140 ~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i~~~~-~~~~piI  208 (215)
                      .+.++  .+.++||||+||+.++.+|..||++++++|+|||+++          .++|++...|++++..+. -.++|+|
T Consensus       187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii  264 (353)
T 1cip_A          187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  264 (353)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence            34444  5889999999999999999999999999999999999          567999999999987643 2578988


Q ss_pred             EEee
Q 028037          209 FFHI  212 (215)
Q Consensus       209 lVa~  212 (215)
                      ||+.
T Consensus       265 Lv~N  268 (353)
T 1cip_A          265 LFLN  268 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.45  E-value=1.9e-14  Score=129.50  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCC--------CCCCCccchhh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIA  168 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G--------~e~~~~~~~~~  168 (215)
                      .+...+|+++|.+|||||||++++.+..+....++.|.+.......++.....+++|||+|        ++++......+
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            3456799999999999999999999987763334555555444555555556899999999        55666777888


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++++|++|+|+|..+.-+  ....|+.++.+.  .+.|++||+
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~  138 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAV  138 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEE
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEE
Confidence            999999999999876433  444454444332  467776664

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.44  E-value=4.5e-13  Score=117.50  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             eee-EEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC---------CCccchhh
Q 028037          100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA  168 (215)
Q Consensus       100 ~~K-IvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~---------~~~~~~~~  168 (215)
                      .++ |+++|.+|||||||++++.+..+. ...+....+.....+.+++  ..+.+|||+|.-.         |... ...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence            456 999999999999999999988775 3333333455567788887  4578999999632         1112 224


Q ss_pred             ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~--Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      +..+|++++|+|++++.  +++.+..|.+.+......+.|+|+|.
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~  299 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL  299 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence            68999999999999987  77778788877777655667866654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.43  E-value=2e-13  Score=122.78  Aligned_cols=108  Identities=15%  Similarity=0.167  Sum_probs=77.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCeEEEEEEEecCC----------CCCCCccc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHV  165 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G----------~e~~~~~~  165 (215)
                      ...+||+++|+++||||||+++|.+.+. . ...+++..+.....+..++.  +++||||+|          +|+|..+.
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            3468999999999999999999997763 2 55566666766677777775  789999999          67776666


Q ss_pred             hh-hccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~-~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .. +++.+|++|+|+|.++..+. .-..|...+.+   .+.|+|||.
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~  313 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVV  313 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEE
Confidence            54 77899999999999986442 33456666655   347766554

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.43  E-value=4.1e-13  Score=112.87  Aligned_cols=109  Identities=7%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCC-CC-Cc-------cccceeeeEEEEEEECCeEEEEEEEecCCCCCC-------C
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RS-------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F  162 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~-f~-~~-------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~-------~  162 (215)
                      ..+||+++|.+|+|||||++++++.. +. ++       .+|++.++....+..++..+.+.||||+|....       .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            47999999999999999999976554 44 43       567777877777777777789999999998432       2


Q ss_pred             ccc-------hhhcc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          163 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       163 ~~~-------~~~~~-------------~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+.       ..|+.             .+|+++++.+.++..-...-..|++.+..    ++|+|+|.
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~  151 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLI  151 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEE
Confidence            222       33333             26788888877663322222456666654    57776654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.42  E-value=1.5e-13  Score=124.75  Aligned_cols=105  Identities=18%  Similarity=0.325  Sum_probs=79.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccccceeeeEEEEEEECCeEEEEEEEecCCCC-CCCc--------cchhh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA  168 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e-~~~~--------~~~~~  168 (215)
                      .+||+++|.+|||||||++++.+.++  ....+.+..++....+.+++  ..+.+|||+|++ ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998864  35556566677777888876  458999999998 6643        23467


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI  212 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~  212 (215)
                      ++.+|++|+|||.+++.+++..+- ++.+     .+.|+++| +|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l-----~~~piivV~NK  359 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINK  359 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEE
T ss_pred             hhcccEEEEEecCCCCCCHHHHHH-HHHh-----cCCCEEEEEEC
Confidence            899999999999999988877543 3433     24565544 44

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.42  E-value=1.5e-13  Score=120.42  Aligned_cols=109  Identities=8%  Similarity=0.158  Sum_probs=68.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Ccc--------ccceeeeEEEEEEECCeEEEEEEEecCCC-------CCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS  161 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~-~f~-~~~--------~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~-------e~~  161 (215)
                      ..+||+++|++|+|||||++++++. .|. .+.        +|++.++....+..++..+.+++|||+|+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            4689999999999999999997654 444 322        45666655555555677889999999999       778


Q ss_pred             Cccch-------hhccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          162 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       162 ~~~~~-------~~~~~a~~i-----------ilvfdit~-~~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+..       .|+++++++           +++|++++ ..+|..+. .|+..+    ..++|+|+|.
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~  181 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVI  181 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEE
Confidence            87776       777766655           58899887 77888776 566655    2567766664

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.41  E-value=2e-13  Score=123.19  Aligned_cols=103  Identities=19%  Similarity=0.367  Sum_probs=70.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc--------hhhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~--------~~~~  169 (215)
                      .+||+++|++|||||||+++|.+.++.  ...+++..++....+.+++.  .+.+|||+|..++....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            589999999999999999999987653  44556666666667777774  57999999987654432        3367


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      +++|++++|||.+++.+++. ..|++.+..     .|+++|
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~-----~piivV  336 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQVKH-----RPLILV  336 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHHTT-----SCEEEE
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhccC-----CcEEEE
Confidence            89999999999999887765 567766632     465554

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.40  E-value=2.9e-12  Score=113.49  Aligned_cols=114  Identities=13%  Similarity=0.073  Sum_probs=81.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEE----------------EEEEE---CCeEEEEEEEecCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLIN----------------KTLMV---QGARIAFSIWDVGGD  158 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~----------------~~v~~---~~~~~~l~i~Dt~G~  158 (215)
                      ...+||+++|..++|||||+++|.+................                .....   ......+.+|||+|+
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh   85 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH   85 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence            45789999999999999999999975433211000000000                00000   123378999999999


Q ss_pred             CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ++|......++..+|++|+|+|.++..++.....|+..++....  .| +++++|+
T Consensus        86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~  139 (403)
T 3sjy_A           86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV  139 (403)
T ss_dssp             GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence            99999888999999999999999998888888899888876652  24 4455653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.39  E-value=9.8e-13  Score=117.95  Aligned_cols=86  Identities=9%  Similarity=0.094  Sum_probs=64.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC--CC------------------------------CccccceeeeEEEEEEECC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------------------------------RSLQMAGLNLINKTLMVQG  145 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~------------------------------~~~~t~g~~~~~~~v~~~~  145 (215)
                      ...++|+++|..++|||||+++|+...  +.                              +..+.+..+.....+..+ 
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~-   93 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE-   93 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence            347899999999999999999995431  11                              111223334333334333 


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC  185 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~  185 (215)
                       ...+.||||+|+++|......+++.+|++|+|+|.++..
T Consensus        94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~  132 (439)
T 3j2k_7           94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE  132 (439)
T ss_pred             -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence             458999999999999988888999999999999999853

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.39  E-value=2.5e-13  Score=122.75  Aligned_cols=112  Identities=9%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc--CCCCC--------------------------------ccccceeeeEEEEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVG--NEQER--------------------------------SLQMAGLNLINKTLMV  143 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~--~~f~~--------------------------------~~~t~g~~~~~~~v~~  143 (215)
                      ...+||+++|..++|||||+++|+.  +.+.+                                ...|++..+  ..+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence            4568999999999999999999974  32210                                001222221  12333


Q ss_pred             CCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       144 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~---~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      +  ..++.||||+|+++|......++..+|++|+|+|.++.   .||+....|.+.+......++|  +++++|+
T Consensus       119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~  191 (467)
T 1r5b_A          119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM  191 (467)
T ss_dssp             S--SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred             C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence            3  36799999999999998888889999999999999986   4666544455544433324565  5556664

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.38  E-value=1.7e-13  Score=122.62  Aligned_cols=114  Identities=12%  Similarity=0.180  Sum_probs=78.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--CCC-Ccc---------------------c------cceeeeEEEEEEECCeEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSL---------------------Q------MAGLNLINKTLMVQGARI  148 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~-~~~---------------------~------t~g~~~~~~~v~~~~~~~  148 (215)
                      ..+||+++|..++|||||+++|+++  .+. ...                     .      ..|.........++....
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            4689999999999999999999864  333 110                     0      011111111222334457


Q ss_pred             EEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC----CCc-e-EEEEeec
Q 028037          149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ----VTK-Q-SLFFHII  213 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~----~~~-p-iIlVa~~  213 (215)
                      ++.||||+|+++|......+++.+|++|+|||.++ .+|+++..|..+.+++..    .++ | +++++|+
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~  154 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM  154 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            89999999999998888889999999999999999 899987766655544321    233 2 5667764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.37  E-value=8.6e-13  Score=119.54  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC--CC-Cc---------------------------cccceeeeEEEEEEECCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-RS---------------------------LQMAGLNLINKTLMVQGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f~-~~---------------------------~~t~g~~~~~~~v~~~~~~  147 (215)
                      ...+||+++|..++|||||+++|++..  +. .+                           ....|.++......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            347999999999999999999997651  11 00                           0011333333344444556


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHH
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS  189 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~  189 (215)
                      ..+.||||+|+++|......+++.+|++|+|+|.++..++..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~  152 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESG  152 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccc
Confidence            789999999999999999999999999999999999876544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.37  E-value=7.8e-13  Score=117.16  Aligned_cols=112  Identities=12%  Similarity=0.128  Sum_probs=81.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------cccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~--------~f~~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ...+||+++|..++|||||++++.+.        .|..+        ..+.|.++....+.++.....+.||||+|+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            45799999999999999999999873        33211        012344443344555555578999999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeec
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-S-LFFHII  213 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-i-IlVa~~  213 (215)
                      ......++..+|++|+|+|.++.... ...+|+..+...   ++| + ++++|+
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~  138 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKV  138 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECG
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECc
Confidence            88888889999999999999987643 446677666553   466 4 567764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.36  E-value=8.4e-14  Score=127.71  Aligned_cols=107  Identities=8%  Similarity=0.059  Sum_probs=80.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+|+++|..++|||||+++|.+..+. .+.+++..++....+..++ ...++||||+|++.|..++..+++.+|++|+|
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            578999999999999999999988877 5555555555444444422 23689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||.++....+....| ..+.   ..++|+++|.
T Consensus        83 VDa~dg~~~qt~e~l-~~~~---~~~vPiIVVi  111 (537)
T 3izy_P           83 VAADDGVMKQTVESI-QHAK---DAHVPIVLAI  111 (537)
T ss_dssp             CBSSSCCCHHHHHHH-HHHH---TTTCCEEECC
T ss_pred             EECCCCccHHHHHHH-HHHH---HcCCcEEEEE
Confidence            999997665554433 2332   2456766553

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.33  E-value=1.4e-12  Score=121.03  Aligned_cols=106  Identities=16%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeeeEEEEE------------EECCeEEEEEEEecCCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~-----~t~g~~~~~~~v------------~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ...+|+++|..++|||||++++.+..+.++.     +++|..+.....            .++.....++||||+|++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            4579999999999999999999976554322     234433321110            00011235999999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~---~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..++..+++.+|++|+|||.++   ++|++.+..+    +.   .++|+++|.
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~---~~vPiIVVi  129 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM---YRTPFVVAA  129 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH---TTCCEEEEE
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH---cCCeEEEEe
Confidence            9999999999999999999999   8888776532    22   356765553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.33  E-value=5.8e-12  Score=112.72  Aligned_cols=107  Identities=13%  Similarity=0.223  Sum_probs=70.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc-----------c
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------V  165 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~-----------~  165 (215)
                      ..+||+++|++|||||||++++.+..+.  ...+.+..+.....+.++|.  .+.+|||+|+.++...           .
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            3589999999999999999999988763  44454445555567778876  5789999998543221           1


Q ss_pred             -hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 -PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 -~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                       ..+++.+|++++|+|.++..+++.. .+...+..   .+.|+++|.
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~  299 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVF  299 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEE
Confidence             2467789999999999988777653 23333333   346766554

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.33  E-value=2.8e-12  Score=116.33  Aligned_cols=93  Identities=13%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCC-------CC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA  168 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~-------f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~  168 (215)
                      .+..++|+++|..++|||||++++.+..       +. +..+.+..+.....+.+++  ..+.+|||+|+++|......+
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence            3568999999999999999999999876       22 2222122222222344444  679999999999998888888


Q ss_pred             ccCCcEEEEEEeCCC---hhhHHHHH
Q 028037          169 CKDAVAILFMFDLTS---RCTLNSIV  191 (215)
Q Consensus       169 ~~~a~~iilvfdit~---~~Sf~~i~  191 (215)
                      +..+|++|+|+|.++   +++++.+.
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt~e~l~  119 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQTGEHML  119 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHHHHHHH
T ss_pred             HhhCCEEEEEEecCCCccHHHHHHHH
Confidence            999999999999998   66666554

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.31  E-value=6.8e-12  Score=120.67  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=79.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC------------CCCCc-----c--ccceeeeEEEEEE------------ECCeE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN------------EQERS-----L--QMAGLNLINKTLM------------VQGAR  147 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~------------~f~~~-----~--~t~g~~~~~~~v~------------~~~~~  147 (215)
                      ...||+++|..++|||||+++++..            .+.++     .  .|+........+.            .++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            3679999999999999999999864            12111     1  1222222222222            24558


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHI  212 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~  212 (215)
                      +.++||||+|+.+|......+++.+|++|+|||.++..+++....|.....    .++| +++++|
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK  159 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINK  159 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEEC
Confidence            999999999999999999999999999999999999999998877765442    2455 445554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.30  E-value=4.8e-13  Score=120.57  Aligned_cols=83  Identities=8%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--CCCC--------------------------------ccccceeeeEEEEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER--------------------------------SLQMAGLNLINKTLMV  143 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~~--------------------------------~~~t~g~~~~~~~v~~  143 (215)
                      ...++|+++|..++|||||+++|++.  .+.+                                .-.|+...+  .  .+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~--~--~~   80 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL--W--KF   80 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC--E--EE
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE--E--EE
Confidence            45799999999999999999999864  2211                                001222222  2  23


Q ss_pred             CCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          144 QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       144 ~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      +.....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            34456899999999999988888899999999999999986

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.29  E-value=1.2e-11  Score=110.58  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC---CCCc----------cccce-------------------eeeEEEEEEECC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERS----------LQMAG-------------------LNLINKTLMVQG  145 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~---f~~~----------~~t~g-------------------~~~~~~~v~~~~  145 (215)
                      ...+||+++|..++|||||+++|+++.   +.+.          ..+++                   .........++.
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            346899999999999999999998654   1111          11211                   111111222333


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ...++.||||+|+++|......++..+|++|+|+|.++.... ....|+..+....  ..| +++++|+
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~  167 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKM  167 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECT
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcC
Confidence            456799999999999988888889999999999999986533 3345555554432  124 4456653

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.29  E-value=2.8e-12  Score=119.10  Aligned_cols=107  Identities=11%  Similarity=0.187  Sum_probs=73.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCC--CC---------Ccc---ccceeeeEEEEEEE-----CCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~--f~---------~~~---~t~g~~~~~~~v~~-----~~~~~~l~i~Dt~G~e~  160 (215)
                      ..+|+++|..++|||||+++++...  +.         ++.   .+.|.++....+.+     ++..+.++||||+|+++
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4689999999999999999998621  11         111   12344443333333     56679999999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      |......+++.+|++|+|+|.++..+++....|+....    .++|+|+|
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvV  129 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPV  129 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEE
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEe
Confidence            99888899999999999999999988998888887664    24665554

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.28  E-value=1.7e-12  Score=118.97  Aligned_cols=108  Identities=11%  Similarity=0.116  Sum_probs=77.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc------------------CCCCCccc---cceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG------------------NEQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~------------------~~f~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      ..+|+++|.+++|||||+++++.                  ..+.++.+   ..|..+......++...+.++||||+|+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~   92 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence            57999999999999999999961                  11111111   1233332333333334578999999999


Q ss_pred             CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|......+++.+|++|+|+|.++..+.+....|. .+..   .++|+++|.
T Consensus        93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivvi  141 (528)
T 3tr5_A           93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFI  141 (528)
T ss_dssp             TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEE
T ss_pred             hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEE
Confidence            999999999999999999999999988888877664 3333   356765543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.28  E-value=5.5e-12  Score=111.52  Aligned_cols=110  Identities=9%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC-------CCCCc--c------ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN-------EQERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~-------~f~~~--~------~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      .+||+++|..++|||||+++|.+.       .|..+  .      ...|.......+.++.....+.||||+|+++|...
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~   82 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence            689999999999999999999864       12111  0      11233333233444445578999999999999888


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      ...+++.+|++|+|+|.++....+....| ..++.   .++|  +++++|+
T Consensus        83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~---~~vp~iivviNK~  129 (397)
T 1d2e_A           83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ---IGVEHVVVYVNKA  129 (397)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCCEEEEEECG
T ss_pred             HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH---cCCCeEEEEEECc
Confidence            88889999999999999996544443333 44443   2466  4567664

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.6e-12  Score=121.05  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-----------------------------ccceeeeEEEEEEECCe
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSL-----------------------------QMAGLNLINKTLMVQGA  146 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~-----------------------------~t~g~~~~~~~v~~~~~  146 (215)
                      ....+||+++|..++|||||+++|++.... ...                             ...|..+......++..
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            345789999999999999999999976432 110                             00122222222223334


Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ...+.||||+|+++|......+++.+|++|+|+|.++.
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g  281 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  281 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence            56899999999999998888899999999999999984

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.27  E-value=5.8e-12  Score=106.12  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=70.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc------cccc-----------------e-----ee-------------
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------LQMA-----------------G-----LN-------------  135 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~------~~t~-----------------g-----~~-------------  135 (215)
                      ....||+++|++|||||||+++|++..+. ..      .++.                 |     .+             
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999998874 11      1210                 0     00             


Q ss_pred             --------eEEEEEEEC-CeEEEEEEEecCCCCC-------------CCccchhhccCCcEEE-EEEeCCChhhHHHHHH
Q 028037          136 --------LINKTLMVQ-GARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVG  192 (215)
Q Consensus       136 --------~~~~~v~~~-~~~~~l~i~Dt~G~e~-------------~~~~~~~~~~~a~~ii-lvfdit~~~Sf~~i~~  192 (215)
                              .....+.+. .....+.||||+|...             +..+...|++.+++++ +|+|.++..+.+....
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                    000001110 0136799999999653             3345667888888777 6899988766555555


Q ss_pred             HHHHHHhHCCCCceEEEEe
Q 028037          193 WYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       193 wl~~i~~~~~~~~piIlVa  211 (215)
                      |++.+..   .+.|+++|.
T Consensus       184 ~~~~~~~---~~~~~i~V~  199 (299)
T 2aka_B          184 IAKEVDP---QGQRTIGVI  199 (299)
T ss_dssp             HHHHHCT---TCSSEEEEE
T ss_pred             HHHHhCC---CCCeEEEEE
Confidence            6666543   456765553

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.27  E-value=1.3e-11  Score=109.53  Aligned_cols=77  Identities=19%  Similarity=0.306  Sum_probs=65.7

Q ss_pred             cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 028037          131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW  200 (215)
Q Consensus       131 t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i~~~  200 (215)
                      |+|.+.  +.+.+++  ++++||||+||+.|+.++..||++++++|+|||+++          .++|+++..|++++.+.
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            456554  3455554  889999999999999999999999999999999999          99999999999999875


Q ss_pred             C-CCCceEEEEe
Q 028037          201 N-QVTKQSLFFH  211 (215)
Q Consensus       201 ~-~~~~piIlVa  211 (215)
                      . ..++|+|||+
T Consensus       280 ~~~~~~piiLvg  291 (402)
T 1azs_C          280 RWLRTISVILFL  291 (402)
T ss_dssp             TTCSSCCEEEEE
T ss_pred             ccCCCCeEEEEE
Confidence            3 3678888876

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.27  E-value=2.6e-11  Score=107.51  Aligned_cols=95  Identities=13%  Similarity=0.110  Sum_probs=67.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEEE-------------C--C----eEEEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW  153 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~--t~g~~~~~~~v~~-------------~--~----~~~~l~i~  153 (215)
                      ..+||+++|..++|||||++++.+.   .+. +..+  |++..|....+..             +  +    ....+.||
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            4689999999999999999999843   333 3333  5555555444322             1  1    13789999


Q ss_pred             ecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHHHH
Q 028037          154 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW  193 (215)
Q Consensus       154 Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~~w  193 (215)
                      ||+|+++|.......+..+|++|+|+|.++    +++++.+..|
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~  130 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL  130 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH
Confidence            999999887766666778899999999994    5677666544

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.27  E-value=8.7e-12  Score=106.42  Aligned_cols=106  Identities=11%  Similarity=0.044  Sum_probs=70.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc-cceeeeEEEEEEECCeEEEEEEEecCCCC---------CCCccc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHV  165 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e---------~~~~~~  165 (215)
                      ....+|+++|.+|||||||++++++..+.  ...+ ++. +.....+..+  ..++.+|||+|.+         .+....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr-~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~   82 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR-HRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAA   82 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCS-SCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcce-eeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHH
Confidence            45678999999999999999999988764  2222 221 1111222333  4678999999998         344455


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+++.+|++++|+|.++   +.....|+-+...  ..+.|+++|.
T Consensus        83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvl  123 (301)
T 1ega_A           83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAV  123 (301)
T ss_dssp             TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEE
T ss_pred             HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEE
Confidence            677899999999999987   4444455544322  2356765553

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.27  E-value=6.7e-12  Score=116.48  Aligned_cols=109  Identities=10%  Similarity=0.183  Sum_probs=75.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC---------Cccc---cceeeeEEE--EEEE---CCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE---------RSLQ---MAGLNLINK--TLMV---QGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~---------~~~~---t~g~~~~~~--~v~~---~~~~~~l~i~Dt~G~e~  160 (215)
                      ..+|+++|..++|||||+++++..  .+.         ++.+   ..|.++...  .+.+   ++..+.++||||+|+++
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            579999999999999999999852  111         1100   123332211  2222   56679999999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      |......+++.+|++|+|+|.++..+++....|.....    .++|+|+ ++|
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNK  134 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINK  134 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEec
Confidence            98888888999999999999999999999888877654    3466554 444

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.26  E-value=4e-12  Score=101.42  Aligned_cols=103  Identities=12%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC----------Cccchh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPI  167 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~----------~~~~~~  167 (215)
                      ...+|+++|++|||||||++++.+..+. .+.++.|.......+.+++   .+.+||++|....          ......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            3579999999999999999999988765 5455666554444444443   5789999998532          222233


Q ss_pred             hc---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEE
Q 028037          168 AC---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       168 ~~---~~a~~iilvfdit~~~Sf~~--i~~wl~~i~~~~~~~~piIlV  210 (215)
                      ++   ..++++++++|+++..++..  +..|+..      .++|+++|
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~------~~~~~~~v  143 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD------SNIAVLVL  143 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------TTCCEEEE
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEE
Confidence            44   47899999999998766643  3345432      35776654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.26  E-value=7.2e-12  Score=110.03  Aligned_cols=100  Identities=6%  Similarity=0.016  Sum_probs=72.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      +|+++|..++|||||++++.     +...|++..+  ..  ++.....++||||+|+++|.......++.+|++|+|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~--~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITM--YN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS-----EEEEESSSEE--EE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeE--EE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998     1222333333  22  33334569999999999998777778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhHCCCCceEEEEe-ec
Q 028037          182 TSRCTLNSIVGWYSEARKWNQVTKQSLFFH-II  213 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~~~~~piIlVa-~~  213 (215)
                       +...+....+|+..+.... ....+++++ |+
T Consensus        93 -~~g~~~qt~e~~~~~~~~~-i~~~ivvvNNK~  123 (370)
T 2elf_A           93 -PQGLDAHTGECIIALDLLG-FKHGIIALTRSD  123 (370)
T ss_dssp             -TTCCCHHHHHHHHHHHHTT-CCEEEEEECCGG
T ss_pred             -CCCCcHHHHHHHHHHHHcC-CCeEEEEEEecc
Confidence             4556667778877776543 223355665 53

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.25  E-value=1.3e-11  Score=108.09  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=67.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCe---------------EEEEEEEecCCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRS  161 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~  161 (215)
                      .+||.++|.+|||||||++++.+..+. ..++  |++.+..  .+.+++.               ...+++|||+|+.++
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            479999999999999999999988764 3333  4444433  3444443               257999999999876


Q ss_pred             C----ccch---hhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q 028037          162 F----DHVP---IACKDAVAILFMFDLTS----------RCTLNSIVGWYSEA  197 (215)
Q Consensus       162 ~----~~~~---~~~~~a~~iilvfdit~----------~~Sf~~i~~wl~~i  197 (215)
                      .    .+..   .+++++|++++|+|+++          .+.++.+..|..++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL  132 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTEL  132 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHH
Confidence            3    2333   34789999999999997          25666666555555

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.24  E-value=1.3e-11  Score=113.17  Aligned_cols=110  Identities=10%  Similarity=0.061  Sum_probs=71.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--CCC----------------C---ccccceeeeEEEEEEECCeEEEEEEEecCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG  157 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~----------------~---~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G  157 (215)
                      ...||+++|..++|||||+++++..  .+.                +   ...+.|.++......++...+.++||||+|
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            3689999999999999999999863  110                0   001223333222333333457899999999


Q ss_pred             CCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       158 ~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      +++|......+++.+|++|+|+|.++...-+. ..++..+..   .++|+++ ++|
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~---~~ipiivviNK  143 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL---RDTPILTFMNK  143 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT---TTCCEEEEEEC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH---cCCCEEEEEcC
Confidence            99999888889999999999999998643222 233333322   3566554 444

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.22  E-value=7.5e-11  Score=104.56  Aligned_cols=97  Identities=11%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC---CCC-Cccc--cceeeeEEEEEEE-------------C--C----eEEEEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS  151 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~---~f~-~~~~--t~g~~~~~~~v~~-------------~--~----~~~~l~  151 (215)
                      ....++|+++|..++|||||++++.+.   .+. +..+  |+...+....+..             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            345799999999999999999999843   333 3233  5555554433322             1  1    137899


Q ss_pred             EEecCCCCCCCccchhhccCCcEEEEEEeCCC----hhhHHHHHHH
Q 028037          152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGW  193 (215)
Q Consensus       152 i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~----~~Sf~~i~~w  193 (215)
                      ||||+|+++|.......+..+|++|+|+|.++    .++++.+..|
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~  132 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL  132 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH
Confidence            99999999887666666778899999999994    5666666544

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.19  E-value=6.3e-12  Score=114.39  Aligned_cols=90  Identities=10%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      +..+|+++|..++|||||++++.+..+. .+.+.+..+.....+..++  ..++||||+|++.|..++..++..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            3579999999999999999999987665 3333222222222333344  468999999999999999999999999999


Q ss_pred             EEeCCC---hhhHHHH
Q 028037          178 MFDLTS---RCTLNSI  190 (215)
Q Consensus       178 vfdit~---~~Sf~~i  190 (215)
                      |||.++   +++++.+
T Consensus        81 VVda~~g~~~qT~e~l   96 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI   96 (501)
T ss_dssp             EEETTTBSCTTTHHHH
T ss_pred             EeecccCccHHHHHHH
Confidence            999998   4554443

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.18  E-value=8.3e-11  Score=104.20  Aligned_cols=100  Identities=20%  Similarity=0.200  Sum_probs=59.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEE-------------------EECC-eEEEEEEEecCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTL-------------------MVQG-ARIAFSIWDVGG  157 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v-------------------~~~~-~~~~l~i~Dt~G  157 (215)
                      +||.++|.++||||||++++.+.... ..++  |...+.....+                   .+++ ..+.+++|||+|
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999988743 3332  22222221111                   1233 357899999999


Q ss_pred             CCC----CCccch---hhccCCcEEEEEEeCCCh-----------hhHHHHHHHHHHHHhH
Q 028037          158 DSR----SFDHVP---IACKDAVAILFMFDLTSR-----------CTLNSIVGWYSEARKW  200 (215)
Q Consensus       158 ~e~----~~~~~~---~~~~~a~~iilvfdit~~-----------~Sf~~i~~wl~~i~~~  200 (215)
                      ..+    ...+..   .+++++|++++|+|.++.           +.++.+..|..++..+
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~  141 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW  141 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence            864    233333   346899999999999987           6788877766666543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.17  E-value=4.7e-11  Score=103.98  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccce----------------------------------------------
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG----------------------------------------------  133 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g----------------------------------------------  133 (215)
                      .+|+++|++|+|||||++++.+..|. ....+..                                              
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            39999999999999999999998873 2111100                                              


Q ss_pred             ------eeeEEEEEEE-CCeEEEEEEEecCCCCCC-------------CccchhhccCCcEEEEEEeCCChhhHHHHHHH
Q 028037          134 ------LNLINKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW  193 (215)
Q Consensus       134 ------~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~-------------~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~w  193 (215)
                            +......+.+ ......+.+|||+|..++             ..+...|++++|++|+|+|.++.+...  ..|
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                  0000001111 111246899999999887             556778899999999999877654332  456


Q ss_pred             HHHHHhHCCCCceEEEE
Q 028037          194 YSEARKWNQVTKQSLFF  210 (215)
Q Consensus       194 l~~i~~~~~~~~piIlV  210 (215)
                      +..++.....+.|+|+|
T Consensus       193 ~~l~~~~~~~~~~~i~V  209 (360)
T 3t34_A          193 IKISREVDPSGDRTFGV  209 (360)
T ss_dssp             HHHHHHSCTTCTTEEEE
T ss_pred             HHHHHHhcccCCCEEEE
Confidence            66666555555665554

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.17  E-value=5.9e-11  Score=111.94  Aligned_cols=107  Identities=15%  Similarity=0.073  Sum_probs=75.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------C-------ccccceeeeEEEEEEECCeEEEEEEEecC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE------------R-------SLQMAGLNLINKTLMVQGARIAFSIWDVG  156 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~-------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~  156 (215)
                      ....+|+++|..++|||||+++++..  .+.            +       ...|++..  ...+..+  .+.++||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDTP   85 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDTP   85 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECCC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEECc
Confidence            34689999999999999999999842  111            0       01122222  1222333  4789999999


Q ss_pred             CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI  212 (215)
Q Consensus       157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~  212 (215)
                      |+.+|......+++.+|++|+|+|.++..+++....|.. +.+   .++|++ +++|
T Consensus        86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNK  138 (691)
T 1dar_A           86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANK  138 (691)
T ss_dssp             SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEEC
T ss_pred             CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEEC
Confidence            999999899999999999999999999999888877764 333   245654 4454

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.17  E-value=1.2e-11  Score=121.20  Aligned_cols=114  Identities=9%  Similarity=0.094  Sum_probs=77.4

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcC-------CCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~-------~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      .....+||+++|..++|||||++++.+.       .|..        ...+.|.++....+.++.....++||||+|+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            3455799999999999999999999863       1111        112334443333344555567899999999999


Q ss_pred             CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeec
Q 028037          161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ--SLFFHII  213 (215)
Q Consensus       161 ~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p--iIlVa~~  213 (215)
                      |......+++.+|++|+|+|.++....+ ..+|+..++..   ++|  |++++|+
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKi  422 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKC  422 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECC
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeec
Confidence            9888888899999999999999875433 34566666543   466  4567764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.17  E-value=2.5e-11  Score=107.32  Aligned_cols=91  Identities=13%  Similarity=0.205  Sum_probs=52.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCCCCc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD  163 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~~~~  163 (215)
                      .++|.++|.+|||||||++++.+..+. ..++.+..+.....+.+++.               ...+++||++|..++..
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            579999999999999999999988765 44444434444445555542               24599999999887543


Q ss_pred             -------cchhhccCCcEEEEEEeCCChhhHHHH
Q 028037          164 -------HVPIACKDAVAILFMFDLTSRCTLNSI  190 (215)
Q Consensus       164 -------~~~~~~~~a~~iilvfdit~~~Sf~~i  190 (215)
                             ....+++++|++++|+|.++.+++.++
T Consensus       102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v  135 (396)
T 2ohf_A          102 NGQGLGNAFLSHISACDGIFHLTRAFEDDDITHV  135 (396)
T ss_dssp             -----CCHHHHHHHTSSSEEEEEEC---------
T ss_pred             hhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhh
Confidence                   345678999999999999987665443

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.16  E-value=4.8e-11  Score=112.59  Aligned_cols=109  Identities=17%  Similarity=0.193  Sum_probs=74.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccccce--------eeeEEEEEEE-CCe----------------------
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLINKTLMV-QGA----------------------  146 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g--------~~~~~~~v~~-~~~----------------------  146 (215)
                      .++|+++|++|+|||||++++++..+.  ...+++.        .+... ++.+ ++.                      
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~-t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKV-TIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEE-EEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeE-EEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            689999999999999999999988754  3334331        11000 1111 110                      


Q ss_pred             -----------------------E--EEEEEEecCCCCC---CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028037          147 -----------------------R--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR  198 (215)
Q Consensus       147 -----------------------~--~~l~i~Dt~G~e~---~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~  198 (215)
                                             .  ..+.||||+|...   .......|++++|++|+|+|.++..++.....|.+.+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                                   0  3589999999654   34456678899999999999999999888888876664


Q ss_pred             hHCCCCceE-EEEee
Q 028037          199 KWNQVTKQS-LFFHI  212 (215)
Q Consensus       199 ~~~~~~~pi-IlVa~  212 (215)
                      ..   +.|+ ++++|
T Consensus       228 ~~---~~~iiiVlNK  239 (695)
T 2j69_A          228 GR---GLTVFFLVNA  239 (695)
T ss_dssp             TS---CCCEEEEEEC
T ss_pred             hh---CCCEEEEEEC
Confidence            33   3454 44454

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.16  E-value=8.5e-11  Score=104.78  Aligned_cols=111  Identities=9%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc--------cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc----
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----  163 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~----  163 (215)
                      ....++|+++|++|+|||||++.+++..+. ..        .++.+.+.....+..++....+++||++|...+..    
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            345789999999999999999999988773 21        12333333222223345556899999999876421    


Q ss_pred             ---------------------cchhhccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEe
Q 028037          164 ---------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       164 ---------------------~~~~~~~~a~~iilvfdit~~-~Sf~~i~-~wl~~i~~~~~~~~piIlVa  211 (215)
                                           +...++.++++.+++|++... .+|+.+. .|+.++.    .++|+|+|.
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVi  174 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLI  174 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEE
Confidence                                 234466788888888888765 5777775 6888774    256766654

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.15  E-value=1.2e-11  Score=105.46  Aligned_cols=88  Identities=10%  Similarity=-0.040  Sum_probs=72.2

Q ss_pred             HHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh-hHHHHH
Q 028037          115 SFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV  191 (215)
Q Consensus       115 SLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~  191 (215)
                      +|+.+|+.+.|.  ++.+|+|..+. ..+..++   +++|||+  |++|..+++.||+++|++|+|||+++++ ||+.+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            699999999996  56689995554 3332333   7899999  9999999999999999999999999998 799999


Q ss_pred             HHHHHHHhHCCCCceEEEEe
Q 028037          192 GWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       192 ~wl~~i~~~~~~~~piIlVa  211 (215)
                      .|+.+++.   .++|++||+
T Consensus       106 ~~l~~~~~---~~~piilv~  122 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVI  122 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEE
T ss_pred             HHHHHHHH---CCCCEEEEE
Confidence            99998876   357766664

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.13  E-value=4.2e-11  Score=110.19  Aligned_cols=107  Identities=15%  Similarity=0.101  Sum_probs=73.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeeeEEEEEEECCe-----------------------------
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMAGLNLINKTLMVQGA-----------------------------  146 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~----~~~~t~g~~~~~~~v~~~~~-----------------------------  146 (215)
                      ..+|+++|..|+|||||++++++..+.    ...+++...   ..+..+..                             
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~---~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF---VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE---EEEECCSSSEEECCC------------------CCCT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE---EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            579999999999999999999998762    222322100   00000000                             


Q ss_pred             --E---------EEEEEEecCCCCC-----------CCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC
Q 028037          147 --R---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVT  204 (215)
Q Consensus       147 --~---------~~l~i~Dt~G~e~-----------~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~  204 (215)
                        .         ..+.||||+|...           |......++..+|++|+|+|.++....+....|++.+.+.   +
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---E  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---G
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---C
Confidence              0         2589999999875           3345566788999999999999876677778888877543   3


Q ss_pred             ce-EEEEee
Q 028037          205 KQ-SLFFHI  212 (215)
Q Consensus       205 ~p-iIlVa~  212 (215)
                      .| ++|++|
T Consensus       219 ~pvilVlNK  227 (550)
T 2qpt_A          219 DKIRVVLNK  227 (550)
T ss_dssp             GGEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            45 444554

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.13  E-value=9.6e-11  Score=110.52  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=75.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc--CCCC------------Cccc---cceeee--EEEEEEECCeEEEEEEEecCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RSLQ---MAGLNL--INKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~--~~f~------------~~~~---t~g~~~--~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ...+|+++|..++|||||+++++.  +.+.            ++.+   ..+...  ....+..+  .+.++||||+|+.
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~   86 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV   86 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence            368999999999999999999985  3321            1000   011111  11223333  4789999999999


Q ss_pred             CCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEee
Q 028037          160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQS-LFFHI  212 (215)
Q Consensus       160 ~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~pi-IlVa~  212 (215)
                      +|......+++.+|++|+|+|.++..+++....|.. +.+.   ++|+ ++++|
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~---~~p~ilviNK  136 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY---GVPRIVFVNK  136 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEEC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc---CCCEEEEEEC
Confidence            999888999999999999999999988888777754 4432   4554 44555

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.12  E-value=1.6e-10  Score=109.19  Aligned_cols=110  Identities=15%  Similarity=0.113  Sum_probs=75.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEEE--EEEE-----CCeEEEEEEEe
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLINK--TLMV-----QGARIAFSIWD  154 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~~---t~g~~~~~~--~v~~-----~~~~~~l~i~D  154 (215)
                      ...+|+++|..++|||||+.+++..  .+.            ++.+   ..|..+...  .+..     ++..+.++|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            3579999999999999999999742  221            1100   112222111  2222     23458999999


Q ss_pred             cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI  212 (215)
Q Consensus       155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~  212 (215)
                      |+|+.+|......+++.+|++|+|+|.++..+.+....|.. +..   .++|++ +++|
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNK  143 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNK  143 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeC
Confidence            99999998888899999999999999999877776666643 332   245644 4554

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.12  E-value=3.2e-10  Score=99.28  Aligned_cols=97  Identities=13%  Similarity=0.140  Sum_probs=69.3

Q ss_pred             CCHHHH--HHHHhcCCCCC--------ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          111 IGKTSF--VVKYVGNEQER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       111 vGKTSL--i~r~~~~~f~~--------~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +.|--|  +.|+....+..        ..+|+|.+.  ..+.++  .+.++||||+||+.++..+..||++++++|+|||
T Consensus       158 s~~yfl~~~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~d  233 (362)
T 1zcb_A          158 SVKYFLDNLDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS  233 (362)
T ss_dssp             THHHHHTTHHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred             cHHHHHHHHHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEE
Confidence            344444  66777666652        235677764  345555  4889999999999999999999999999999999


Q ss_pred             CCC----------hhhHHHHHHHHHHHHhHC-CCCceEEEEe
Q 028037          181 LTS----------RCTLNSIVGWYSEARKWN-QVTKQSLFFH  211 (215)
Q Consensus       181 it~----------~~Sf~~i~~wl~~i~~~~-~~~~piIlVa  211 (215)
                      +++          .++|++...|++.+.+.. ..++|+|||+
T Consensus       234 ls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~  275 (362)
T 1zcb_A          234 SSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL  275 (362)
T ss_dssp             TTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             CccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEE
Confidence            999          789999999999987643 3578988875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.09  E-value=7.4e-11  Score=100.73  Aligned_cols=110  Identities=8%  Similarity=0.105  Sum_probs=55.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC-CCC-Cc--------cccceeeeEEEEEEECCeEEEEEEEecCCC-------CC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR  160 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~-~f~-~~--------~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~-------e~  160 (215)
                      ...++|+++|++|||||||++++.+. .+. ..        .++.+.+.....+..++....+++||++|+       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34799999999999999999998765 554 22        122222222233333556689999999998       66


Q ss_pred             CCccch-------hhccCCcEE-----------EEEEeCCC-hhhHHHHHHHHHHHHhHCCCCceEEEE
Q 028037          161 SFDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIVGWYSEARKWNQVTKQSLFF  210 (215)
Q Consensus       161 ~~~~~~-------~~~~~a~~i-----------ilvfdit~-~~Sf~~i~~wl~~i~~~~~~~~piIlV  210 (215)
                      +..+..       .|+++.++.           +++|++.. ..+|+.+..  +.+++.. .++++++|
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~--~~l~~l~-~~~~iilV  161 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV--AFMKAIH-NKVNIVPV  161 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH--HHHHHHT-TTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH--HHHHHHH-hcCCEEEE
Confidence            666665       565544332           24554442 335666541  3334333 34555444

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.09  E-value=1.7e-10  Score=108.44  Aligned_cols=110  Identities=11%  Similarity=0.049  Sum_probs=77.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC--------------Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~--------------~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ...+|+++|..|+|||||++++++....              ++.+   ..+..+......+....+.++||||+|+++|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            3579999999999999999999843321              1111   1233444444444444688999999999999


Q ss_pred             CccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEE-Eee
Q 028037          162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLF-FHI  212 (215)
Q Consensus       162 ~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIl-Va~  212 (215)
                      ......+++.+|++++|+|.++..+.+.. .|+..+...   ++|+++ ++|
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~---~ip~ilv~NK  135 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL---GLPRMVVVTK  135 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT---TCCEEEEEEC
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc---cCCEEEEecC
Confidence            88888999999999999999887554443 555555543   456554 444

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.07  E-value=1.4e-10  Score=98.46  Aligned_cols=28  Identities=29%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      ....+|+++|++|||||||++++++..+
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            3357899999999999999999999887

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.06  E-value=3.7e-11  Score=111.46  Aligned_cols=85  Identities=11%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCC--C-----------------------------C-CccccceeeeEEEEEEECC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNE--Q-----------------------------E-RSLQMAGLNLINKTLMVQG  145 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~--f-----------------------------~-~~~~t~g~~~~~~~v~~~~  145 (215)
                      ...++|+++|..++|||||+++|+...  +                             . +..+.+..+..  ...+..
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~--~~~~~~  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA--STTFES  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee--EEEEEe
Confidence            446899999999999999999996421  0                             0 00111122222  222233


Q ss_pred             eEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       146 ~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ....+.||||+|+++|......++..+|++|+|+|.++.
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g  291 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN  291 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            347899999999999988888889999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.96  E-value=1.6e-09  Score=96.57  Aligned_cols=108  Identities=15%  Similarity=0.173  Sum_probs=73.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCC----CCccchhhc---cCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDA  172 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~----~~~~~~~~~---~~a  172 (215)
                      -.|.++|.+|+|||||++.+.+.... ..++.+......-.+.+++ ...+.+||++|..+    +..+...++   ..+
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            36899999999999999999987543 2222111222223344443 35689999999753    233333333   469


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEE
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ--VTKQSLFF  210 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~--~~~piIlV  210 (215)
                      +.++.++|++ +++++++..|.+++..+..  .+.|.+||
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILV  275 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVA  275 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEE
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEE
Confidence            9999999999 7789999999999887652  23554444

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.95  E-value=1.9e-09  Score=94.61  Aligned_cols=81  Identities=11%  Similarity=0.142  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECC-------------------eEEEEEEEecCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD  158 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~-------------------~~~~l~i~Dt~G~  158 (215)
                      ++|.++|.+|||||||++++.+.... ..++  |+..+..  .+.+.+                   ....+++|||+|.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            68999999999999999999976532 2222  2322222  122221                   2467999999999


Q ss_pred             CCCC----ccch---hhccCCcEEEEEEeCCC
Q 028037          159 SRSF----DHVP---IACKDAVAILFMFDLTS  183 (215)
Q Consensus       159 e~~~----~~~~---~~~~~a~~iilvfdit~  183 (215)
                      .++.    .+..   .+++.+|++++|+|.++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            8753    2332   34789999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.91  E-value=7.5e-10  Score=96.25  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=25.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE  126 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~  126 (215)
                      ...+|+++|+++||||||++++++.+|.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3579999999999999999999998873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.69  E-value=2.2e-11  Score=98.44  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=31.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI  137 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~  137 (215)
                      .+||+++|++|||||||+++|+...+. .+.++++.++.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~   76 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI   76 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence            479999999999999999999988776 44556666654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.9e-07  Score=82.06  Aligned_cols=109  Identities=13%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC----Cccch---hhccC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVP---IACKD  171 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~----~~~~~---~~~~~  171 (215)
                      ..+|.++|.++||||||++++.+.... ..++.+..+.....+.+++  .++++.||+|--+-    ..+..   ...+.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            468999999999999999999987655 4555333444445667766  45889999995432    11222   23578


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI  212 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~  212 (215)
                      +|++++|.|.+++.  ........++..+.   ...-++++++|
T Consensus       150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK  191 (376)
T 4a9a_A          150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKK  191 (376)
T ss_dssp             CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEE
T ss_pred             cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhH
Confidence            99999999999873  33333444444332   12334555554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.58  E-value=9.8e-08  Score=84.32  Aligned_cols=84  Identities=14%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC-C-CccccceeeeEEEEEEECCe---------------EEEEEEEecCCCCC--
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR--  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f-~-~~~~t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~--  160 (215)
                      ..++.++|.+|||||||++.+.+... . ..+|.+..+...-.+.+++.               ...+.+||++|...  
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~   99 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   99 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence            57999999999999999999999776 4 45554434444445566542               14689999999543  


Q ss_pred             -----CCccchhhccCCcEEEEEEeCCC
Q 028037          161 -----SFDHVPIACKDAVAILFMFDLTS  183 (215)
Q Consensus       161 -----~~~~~~~~~~~a~~iilvfdit~  183 (215)
                           +......+++.+|+++.|+|..+
T Consensus       100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A          100 STGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 22233445689999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.38  E-value=3.6e-07  Score=73.10  Aligned_cols=82  Identities=11%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeeeE------------EEEEEECC------------------eEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI  148 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~t~g~~~~------------~~~v~~~~------------------~~~  148 (215)
                      ..+|+++|.+|||||||++++....+.. ....+..++.            ...+.++.                  ...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            4689999999999999999998653221 1111111110            01111211                  235


Q ss_pred             EEEEEecCCCCCCCccchhh-ccCCcEEEEEEeCCChh
Q 028037          149 AFSIWDVGGDSRSFDHVPIA-CKDAVAILFMFDLTSRC  185 (215)
Q Consensus       149 ~l~i~Dt~G~e~~~~~~~~~-~~~a~~iilvfdit~~~  185 (215)
                      .+.+|||+|+-.    .+.+ ....+.+++|+|.++..
T Consensus       110 d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~  143 (221)
T 2wsm_A          110 DLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGD  143 (221)
T ss_dssp             SEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCT
T ss_pred             CEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcc
Confidence            788999999621    1112 13578899999988754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.37  E-value=6.4e-07  Score=82.32  Aligned_cols=110  Identities=10%  Similarity=0.078  Sum_probs=74.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC------------------CCCCccc---cceeeeEEEEEEECCeEEEEEEEecCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGD  158 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~------------------~f~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~  158 (215)
                      .-+|.|+|-.+.|||||..+++..                  .+.++.+   .-|+.+....+.+..+.+.++|.||+|+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            468999999999999999999621                  1111111   2244444444444444578999999999


Q ss_pred             CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       159 e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ..|..-....++-+|++|+|+|..+----+...-|.. +.++   ++| +++|||+
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~~---~lp~i~fINK~  162 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRMR---ATPVMTFVNKM  162 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHHT---TCCEEEEEECT
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHHh---CCceEEEEecc
Confidence            9999888888999999999999998766666666644 3333   355 5567775

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.28  E-value=3.2e-07  Score=76.68  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=37.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS  161 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~  161 (215)
                      ++++++|.+|||||||++++.+.......++.|.+.....+.++   ..+++|||+|....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCcccC
Confidence            79999999999999999999987764333344443332333333   25889999997643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.22  E-value=3.2e-07  Score=79.71  Aligned_cols=41  Identities=7%  Similarity=0.018  Sum_probs=28.5

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHH
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI  190 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i  190 (215)
                      .+.+.||||+|...   ........+|++++|+|.+..+.++.+
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l  211 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI  211 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH
Confidence            36789999999433   233345789999999998766554433

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.21  E-value=3.8e-08  Score=88.63  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=66.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC--CCccc--------hhh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIA  168 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~--~~~~~--------~~~  168 (215)
                      ...+|+++|.+|+||||+.+++...-.....++.+++.........+.....++||..|++.  +...+        ..+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~  117 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF  117 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999998543222223333221111111112224457899998743  23332        556


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                      +..+++.++|+|.++. +++..+.|++.+++..
T Consensus       118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~  149 (469)
T 1bif_A          118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG  149 (469)
T ss_dssp             HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence            6678899999999998 6888889988887753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.20  E-value=5.2e-06  Score=78.38  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=74.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--------C------CCCcc---ccceeeeEEEEEEE--C-----CeEEEEEEEec
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--------E------QERSL---QMAGLNLINKTLMV--Q-----GARIAFSIWDV  155 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--------~------f~~~~---~t~g~~~~~~~v~~--~-----~~~~~l~i~Dt  155 (215)
                      --+|.++|--+.|||||..+++..        +      +.++.   ..-|+.+....+.+  .     ...+.++|.||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            358999999999999999998621        1      11111   11244444333333  2     23689999999


Q ss_pred             CCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       156 ~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      +|+-.|..-....++-+|++|+|.|...--.-+...-|.+..+..-   -++++|||+
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l---p~i~~iNKi  147 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV---PRIVYVNKM  147 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC---CEEEEEECS
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC---CeEEEEccc
Confidence            9999998888888899999999999998765555556665554422   367777875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.06  E-value=5.9e-07  Score=77.97  Aligned_cols=38  Identities=8%  Similarity=0.024  Sum_probs=23.9

Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHH
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN  188 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~  188 (215)
                      +.+.++||+|....   .......+|++++|+|.++....+
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~  204 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQ  204 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHH
Confidence            56889999995321   234467899999999998765443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.04  E-value=3.5e-06  Score=71.01  Aligned_cols=59  Identities=12%  Similarity=0.233  Sum_probs=36.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      ..++++++|.+|||||||++++.+.......+..|.......+.++.   .+.+|||+|-..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            35899999999999999999999776432222222211111233332   578999999754

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.01  E-value=1.3e-06  Score=81.56  Aligned_cols=110  Identities=14%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCC------------CCccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG--NEQ------------ERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  163 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~--~~f------------~~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~  163 (215)
                      -+|.++|-.+.|||||..+++.  +..            .++.+   .-|+.+....+.+.-+...++|.||+|+..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            3689999999999999999962  111            11111   114555555555555567899999999999988


Q ss_pred             cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .....++-+|++|+|+|..+--.-+...-|.. +.++.-  -++++|||+
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~~l--p~i~~INKm  129 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKMGI--PTIFFINKI  129 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHHTC--SCEECCEEC
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHcCC--CeEEEEecc
Confidence            88888899999999999997644444444544 333331  247777875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.94  E-value=9.8e-06  Score=66.37  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHh
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .....+++.|.+|||||||++.+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHH
Confidence            346889999999999999999997

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.94  E-value=3.4e-05  Score=73.33  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=25.7

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .....+|+++|+.++|||||++.+++..|
T Consensus        48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           48 DLDLPQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             GGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            34457999999999999999999999877

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.89  E-value=2.2e-06  Score=74.01  Aligned_cols=38  Identities=11%  Similarity=-0.064  Sum_probs=25.2

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhH
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL  187 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf  187 (215)
                      .+.+.||||+|......   .....+|++++|+|.++.+.+
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~  185 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL  185 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH
Confidence            36799999999665432   246899999999998766543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.84  E-value=3.4e-05  Score=65.48  Aligned_cols=53  Identities=6%  Similarity=-0.053  Sum_probs=44.4

Q ss_pred             CCCCCCccchhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCce-EEEEee
Q 028037          157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQVTKQ-SLFFHI  212 (215)
Q Consensus       157 G~e~~~~~~~~~~~~a~~iilvfdit~~~-Sf~~i~~wl~~i~~~~~~~~p-iIlVa~  212 (215)
                      .++++..+.+.++.++|++++|||+++++ ||+.+.+|+..+..   .++| +|+++|
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK  119 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNK  119 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECC
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEc
Confidence            38899999999999999999999999997 99999999998875   3455 555555

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.59  E-value=6.3e-05  Score=64.83  Aligned_cols=22  Identities=14%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...+.++|.+|+|||||++.+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999997

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.42  E-value=0.00022  Score=62.12  Aligned_cols=76  Identities=12%  Similarity=0.252  Sum_probs=46.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC------CCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------c
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------V  165 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~------~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~  165 (215)
                      .+++++|.+|||||||+|++.+.      ... ...+  |.......+.++..   +.++||+|-.....+        .
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999975      222 2222  22222223444332   789999996532211        1


Q ss_pred             hhhc--cCCcEEEEEEeC
Q 028037          166 PIAC--KDAVAILFMFDL  181 (215)
Q Consensus       166 ~~~~--~~a~~iilvfdi  181 (215)
                      ..++  +..+.++++.|.
T Consensus       238 ~~~~~~~~i~~~~~~l~~  255 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNE  255 (369)
T ss_dssp             HHHSCSSCCCCEEEEECT
T ss_pred             HHHhcccccCceEEEEcC
Confidence            1111  556777777765

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=97.41  E-value=5.9e-05  Score=61.20  Aligned_cols=57  Identities=7%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             ecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---HC--CCCceEEEEe
Q 028037          154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK---WN--QVTKQSLFFH  211 (215)
Q Consensus       154 Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~---~~--~~~~piIlVa  211 (215)
                      |.+||++++.+|..||.++|++|+|.|.+|++-++ .+.-+.++.+   ..  -.++|++|.|
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlA  169 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLS  169 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEE
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEe
Confidence            34699999999999999999999999999987654 4443333322   11  1578988887

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.39  E-value=0.00092  Score=59.45  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--cceeeeEEEEEEE--CCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~-~~~--t~g~~~~~~~v~~--~~~~~~l~i~Dt~G~e~  160 (215)
                      .+++.++|.+|+|||||++.+.+..+.. ...  +.+.......+..  .+....+.++|+.|-..
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~  107 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD  107 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence            4679999999999999999999875431 111  1111111111111  23334789999987543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.19  E-value=0.0005  Score=59.88  Aligned_cols=57  Identities=16%  Similarity=0.269  Sum_probs=35.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f------~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      .+++++|.+|||||||+|++.+...      .......|.......+.+++.   +.++||+|-..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~  223 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIIN  223 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCC
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCc
Confidence            5799999999999999999987521      111111122222233444332   78999999644

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.14  E-value=0.00041  Score=64.18  Aligned_cols=61  Identities=13%  Similarity=0.183  Sum_probs=39.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc-----cceeeeEEEEEEE-CCeEEEEEEEecCCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-----MAGLNLINKTLMV-QGARIAFSIWDVGGDSR  160 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~-----t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~  160 (215)
                      .....|+++|.++||||||+|++.+.... ....     |.|...+  ...+ ......+.++||+|-..
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence            34688999999999999999999987632 2211     2232211  1111 12335688999999654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.09  E-value=0.00048  Score=62.59  Aligned_cols=87  Identities=16%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh------cCCCC--C--cc-c-----------cceeeeEEEEEE-------------EC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV------GNEQE--R--SL-Q-----------MAGLNLINKTLM-------------VQ  144 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~------~~~f~--~--~~-~-----------t~g~~~~~~~v~-------------~~  144 (215)
                      ...|+++|.+||||||+++++.      +.+..  .  .+ +           ..+.+++.....             ..
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~  180 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK  180 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998      32211  1  00 0           011222110000             00


Q ss_pred             CeEEEEEEEecCCCCCCCc-cchh---h--ccCCcEEEEEEeCCChhh
Q 028037          145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCT  186 (215)
Q Consensus       145 ~~~~~l~i~Dt~G~e~~~~-~~~~---~--~~~a~~iilvfdit~~~S  186 (215)
                      ...+.+.|+||+|...... +...   .  +..+|.+++|.|.+....
T Consensus       181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~  228 (504)
T 2j37_W          181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA  228 (504)
T ss_dssp             HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT
T ss_pred             HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc
Confidence            0346789999999875322 1111   1  237899999999887543

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.93  E-value=0.00047  Score=57.54  Aligned_cols=25  Identities=20%  Similarity=0.489  Sum_probs=22.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+++.++|++|+|||||++.+++..
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            5899999999999999999998643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.92  E-value=0.00043  Score=58.72  Aligned_cols=56  Identities=7%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             cCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHH----HHhHC-CCCceEEEEe
Q 028037          155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWN-QVTKQSLFFH  211 (215)
Q Consensus       155 t~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~----i~~~~-~~~~piIlVa  211 (215)
                      .+||++++.+|..||.++|++|+|.|.+|++-++ .+.-+.+    +.+.. -.++|++|.|
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfA  254 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLS  254 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence            4789999999999999999999999999998655 3332222    22211 2578988887

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.33  E-value=0.002  Score=49.86  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||||++.+.+
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.20  E-value=0.0028  Score=49.42  Aligned_cols=22  Identities=41%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.19  E-value=0.0026  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.13  E-value=0.0031  Score=49.72  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+|+|++|||||||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.11  E-value=0.0035  Score=49.91  Aligned_cols=24  Identities=13%  Similarity=0.295  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..--++|+|++|+|||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            345689999999999999999884

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.88  E-value=0.004  Score=47.83  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=16.8

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028037          102 KISLLGDCQIGKTSFVVKY  120 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~  120 (215)
                      -++++|++|+|||||++.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999953

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.84  E-value=0.0045  Score=49.86  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      --++++|++|+|||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36889999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=95.84  E-value=0.0047  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.84  E-value=0.0054  Score=54.26  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++.+.+-
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999974

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=95.78  E-value=0.0051  Score=48.72  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|+++|++|+|||||++.+...
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999999854

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=95.77  E-value=0.0052  Score=47.37  Aligned_cols=23  Identities=17%  Similarity=0.114  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.++++|.+|+|||||++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.69  E-value=0.0057  Score=48.28  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999988753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.69  E-value=0.0056  Score=48.96  Aligned_cols=23  Identities=17%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.++++|++|+|||||++.+.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36889999999999999988753

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=95.67  E-value=0.013  Score=52.28  Aligned_cols=65  Identities=18%  Similarity=0.326  Sum_probs=42.1

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC------------------CCC-C---ccccceeeeEEEEEEE---CCeEEEEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R---SLQMAGLNLINKTLMV---QGARIAFS  151 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~------------------~f~-~---~~~t~g~~~~~~~v~~---~~~~~~l~  151 (215)
                      +..-.-|.|+|..++|||+|+|++++.                  .|. .   ...|.|+-.....+..   ++....+-
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv  143 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence            334567889999999999999999852                  333 1   1114454333211111   45678899


Q ss_pred             EEecCCCCCC
Q 028037          152 IWDVGGDSRS  161 (215)
Q Consensus       152 i~Dt~G~e~~  161 (215)
                      +.||.|-...
T Consensus       144 llDTeG~~~~  153 (447)
T 3q5d_A          144 LMDTQGTFDS  153 (447)
T ss_dssp             EEEEECCCSS
T ss_pred             EEcCCccccc
Confidence            9999996543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=95.60  E-value=0.0066  Score=47.72  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|+++|.+|+|||||++.+..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999874

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.53  E-value=0.013  Score=52.37  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...|+++|.+||||||++..+.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            4689999999999999998886

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.46  E-value=0.0079  Score=45.26  Aligned_cols=21  Identities=24%  Similarity=0.048  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.38  E-value=0.0089  Score=45.69  Aligned_cols=23  Identities=26%  Similarity=0.288  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999988654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=95.36  E-value=0.0084  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.|+|++|+|||||++.+.+
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999987753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.34  E-value=0.0096  Score=44.56  Aligned_cols=19  Identities=26%  Similarity=0.251  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 028037          102 KISLLGDCQIGKTSFVVKY  120 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~  120 (215)
                      -|++.|.+|+||||+.+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5899999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=95.33  E-value=0.0091  Score=46.43  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..++++|.+|+||||+++.+.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.31  E-value=0.0098  Score=44.91  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||+|++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988753

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.26  E-value=0.01  Score=44.93  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4589999999999999999986

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.23  E-value=0.01  Score=45.73  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|.+|+|||||++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999874

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=95.20  E-value=0.012  Score=45.07  Aligned_cols=22  Identities=14%  Similarity=0.067  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=95.19  E-value=0.011  Score=44.67  Aligned_cols=22  Identities=23%  Similarity=0.273  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|.+|+||||+.+.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998865

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.17  E-value=0.0092  Score=45.73  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.++++|++|+|||+|++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.16  E-value=0.014  Score=45.48  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ....|+|.|.+|+||||+.+.+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998864

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.12  E-value=0.012  Score=46.32  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ++.++|+.|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            588999999999999998775

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.09  E-value=0.013  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|++.|.+|+||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999875

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=95.08  E-value=0.013  Score=45.77  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.|+++|.+|+||||+.+.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=95.05  E-value=0.013  Score=45.92  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-.|+++|.+|+|||||++.+.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999998864

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=95.03  E-value=0.013  Score=45.82  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.03  E-value=0.014  Score=46.01  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+|.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.03  E-value=0.013  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999988754

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=95.03  E-value=0.014  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.360  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.|+++|.+|+|||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999988

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.01  E-value=0.013  Score=50.84  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .++++|.+|||||||++.+.+..-
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            689999999999999999997654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.00  E-value=0.014  Score=45.08  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999998864

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=95.00  E-value=0.018  Score=43.77  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|.+|+||||+.+.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=94.99  E-value=0.014  Score=45.96  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+|.|.+|+||||+...+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.99  E-value=0.013  Score=44.74  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+.+.+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.98  E-value=0.014  Score=45.37  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .-++++|.+|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            35789999999999999998853

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=94.92  E-value=0.013  Score=46.24  Aligned_cols=22  Identities=18%  Similarity=0.234  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --+.++|++|+|||||++.+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999999986

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.81  E-value=0.015  Score=46.89  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=94.79  E-value=0.019  Score=43.93  Aligned_cols=23  Identities=26%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+...+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988753

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.77  E-value=0.018  Score=44.06  Aligned_cols=22  Identities=32%  Similarity=0.291  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|.+|+||||+...+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998853

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.76  E-value=0.018  Score=47.03  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999998865

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=94.75  E-value=0.02  Score=44.46  Aligned_cols=23  Identities=22%  Similarity=0.125  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=94.73  E-value=0.017  Score=45.31  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.++|+.|+|||||++.+.+
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.72  E-value=0.017  Score=47.69  Aligned_cols=22  Identities=27%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=94.71  E-value=0.017  Score=45.10  Aligned_cols=23  Identities=17%  Similarity=0.141  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|+++|.+|+||||+.+.+.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999987763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.68  E-value=0.011  Score=47.23  Aligned_cols=20  Identities=25%  Similarity=0.270  Sum_probs=14.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      -+.++|++|+|||||++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999998

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=94.67  E-value=0.018  Score=47.61  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=94.66  E-value=0.054  Score=48.42  Aligned_cols=61  Identities=16%  Similarity=0.322  Sum_probs=41.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHH---h---------------cCCCC-C---ccccceeeeEEEEEEE---CCeEEEEEEEe
Q 028037          100 SLKISLLGDCQIGKTSFVVKY---V---------------GNEQE-R---SLQMAGLNLINKTLMV---QGARIAFSIWD  154 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~---~---------------~~~f~-~---~~~t~g~~~~~~~v~~---~~~~~~l~i~D  154 (215)
                      -.=|.|+|..++|||+|++.+   .               ...|. .   ...|.|+-.....+.+   +|....+-+.|
T Consensus        67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD  146 (457)
T 4ido_A           67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD  146 (457)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred             eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence            345569999999999999954   3               23444 1   1226676655433322   67788999999


Q ss_pred             cCCCCC
Q 028037          155 VGGDSR  160 (215)
Q Consensus       155 t~G~e~  160 (215)
                      |.|...
T Consensus       147 TEG~~d  152 (457)
T 4ido_A          147 TQGTFD  152 (457)
T ss_dssp             ECCBTC
T ss_pred             ccCCCC
Confidence            999654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=94.66  E-value=0.014  Score=44.02  Aligned_cols=23  Identities=35%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||+|+..+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            35799999999999999988643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.65  E-value=0.019  Score=46.63  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6789999999999999998754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.65  E-value=0.018  Score=44.80  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+|.++|..|+||||+.+.+.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.63  E-value=0.018  Score=48.41  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .-+.++|++|+|||||++.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            367999999999999999998

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.63  E-value=0.019  Score=46.91  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6789999999999999998765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.61  E-value=0.02  Score=46.59  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=94.61  E-value=0.017  Score=48.53  Aligned_cols=24  Identities=17%  Similarity=0.187  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .+.++|++|+|||||++.+.+..-
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            678999999999999999986543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=94.61  E-value=0.018  Score=44.23  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.60  E-value=0.019  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998754

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=94.59  E-value=0.026  Score=43.16  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+.+.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998863

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.58  E-value=0.019  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.54  E-value=0.02  Score=47.12  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998754

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=94.50  E-value=0.022  Score=44.97  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+|.++|.+|+||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=94.47  E-value=0.022  Score=44.69  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999873

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.47  E-value=0.021  Score=47.25  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            5789999999999999988754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.46  E-value=0.023  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=94.46  E-value=0.021  Score=47.29  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999998864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.44  E-value=0.023  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.43  E-value=0.022  Score=46.36  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.42  E-value=0.022  Score=46.73  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.42  E-value=0.023  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.42  E-value=0.022  Score=44.89  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-.+++.|++|+|||+|+..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=94.42  E-value=0.024  Score=49.13  Aligned_cols=24  Identities=33%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHh
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ....||+++|.+|+|||||++++.
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            346899999999999999999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=94.42  E-value=0.028  Score=43.34  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|+++|.+|+||||+.+.+...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999988754

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=94.41  E-value=0.03  Score=42.69  Aligned_cols=22  Identities=27%  Similarity=0.285  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...|++.|.+|+||||+.+.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            3569999999999999999886

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.37  E-value=0.022  Score=47.24  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.36  E-value=0.024  Score=46.70  Aligned_cols=22  Identities=18%  Similarity=0.222  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999998864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.35  E-value=0.023  Score=44.83  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|++.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.34  E-value=0.019  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|+.++|++|+|||||++.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            56899999999999999998864

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.33  E-value=0.024  Score=45.88  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++++|++|+|||+|++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            999999999999999988753

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=94.33  E-value=0.037  Score=42.98  Aligned_cols=21  Identities=33%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..|++.|.+|+||||+...+.
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998886

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.32  E-value=0.027  Score=45.66  Aligned_cols=23  Identities=17%  Similarity=0.134  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+|++.|.+|+||||+..++..
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.32  E-value=0.024  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.182  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=94.31  E-value=0.026  Score=44.97  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|+++|++|+||+|...++..
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999988864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.31  E-value=0.025  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.196  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.31  E-value=0.024  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++.|++|+|||+|+..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.30  E-value=0.025  Score=43.69  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|++|+|||+|+..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.27  E-value=0.025  Score=48.01  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+.|+|++|+|||||++.+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3789999999999999998773

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=94.26  E-value=0.026  Score=42.90  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+++|.+|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.26  E-value=0.031  Score=43.63  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +.|.++|.+|+||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999976

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=94.25  E-value=0.028  Score=44.47  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|.+|+||||+...+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.23  E-value=0.0079  Score=51.12  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -.++++|.+|||||||++.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            478999999999999999998653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.22  E-value=0.019  Score=45.80  Aligned_cols=22  Identities=23%  Similarity=0.161  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999998865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.21  E-value=0.012  Score=45.58  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+.++|++|+|||||++.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998874

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.17  E-value=0.026  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999998864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=94.17  E-value=0.031  Score=43.24  Aligned_cols=24  Identities=21%  Similarity=0.182  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|++.|.+|+||||+.+.+...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            357999999999999999998864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.15  E-value=0.027  Score=46.58  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.12  E-value=0.03  Score=43.80  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|++|+|||+|+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            579999999999999999986

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=94.07  E-value=0.019  Score=43.13  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+.++|++|+|||+|++.+.+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.07  E-value=0.031  Score=46.26  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .+.++|+.|+|||||++-+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=94.06  E-value=0.028  Score=47.69  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|.|+|++|+|||||++.+.+
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHh
Confidence            56789999999999999998764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=94.06  E-value=0.028  Score=47.55  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.+.++|++|+||||++..+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            478899999999999999886

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=94.04  E-value=0.042  Score=42.79  Aligned_cols=23  Identities=22%  Similarity=0.065  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+.+.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=94.03  E-value=0.031  Score=44.46  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+|.|.+|+||||+.+.+..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=94.01  E-value=0.032  Score=44.30  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||+|+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5789999999999999999863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.01  E-value=0.035  Score=46.30  Aligned_cols=22  Identities=27%  Similarity=0.155  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|++.|.+|+||||+...+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999999864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=93.99  E-value=0.028  Score=44.53  Aligned_cols=22  Identities=23%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+|+|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=93.98  E-value=0.044  Score=42.07  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+...+..
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999998863

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=93.97  E-value=0.035  Score=43.00  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-+.++|.+|+|||||+.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998874

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=93.95  E-value=0.036  Score=41.58  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|++.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=93.95  E-value=0.032  Score=43.32  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999988764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=93.91  E-value=0.045  Score=42.76  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|.++|.+|+||||+.+.+.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=93.89  E-value=0.012  Score=46.00  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+|.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999998863

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=93.89  E-value=0.032  Score=45.55  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+++|.+|+|||||...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998863

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.88  E-value=0.032  Score=46.26  Aligned_cols=20  Identities=25%  Similarity=0.237  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      ++++|++|+|||+|++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999998875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=93.87  E-value=0.036  Score=44.20  Aligned_cols=21  Identities=19%  Similarity=0.099  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|+|.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=93.83  E-value=0.039  Score=44.20  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=93.82  E-value=0.033  Score=47.00  Aligned_cols=22  Identities=27%  Similarity=0.185  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --+.++|+.|+||||++..+.+
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4688999999999999998864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=93.81  E-value=0.032  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -+.++|++|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999988653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=93.80  E-value=0.037  Score=44.35  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=20.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..-|.+.|..|+|||||++.+.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            467999999999999999988753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=93.77  E-value=0.035  Score=45.65  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++++|++|+|||+|++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            999999999999999988753

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.73  E-value=0.049  Score=41.48  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+...+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=93.72  E-value=0.035  Score=47.46  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .--++++|++|+||||++..+.+
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999998864

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=93.71  E-value=0.04  Score=42.07  Aligned_cols=21  Identities=29%  Similarity=0.159  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=93.70  E-value=0.032  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|++|+|||||+..+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=93.70  E-value=0.037  Score=44.80  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+.+
T Consensus        47 ~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            499999999999999998874

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.69  E-value=0.037  Score=47.89  Aligned_cols=23  Identities=35%  Similarity=0.470  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -+.++|++|+|||||++-+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.67  E-value=0.036  Score=46.54  Aligned_cols=22  Identities=27%  Similarity=0.517  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999988754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.66  E-value=0.036  Score=42.52  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+...+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.64  E-value=0.039  Score=47.86  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            4789999999999999998865

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=93.63  E-value=0.043  Score=44.48  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+.|.|.|.+|+||||+...+..
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=93.63  E-value=0.04  Score=42.90  Aligned_cols=23  Identities=30%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+.+.+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=93.61  E-value=0.04  Score=42.36  Aligned_cols=22  Identities=27%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+...+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=93.61  E-value=0.039  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            4789999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.59  E-value=0.043  Score=41.27  Aligned_cols=21  Identities=19%  Similarity=0.184  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=93.57  E-value=0.039  Score=44.55  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.++|+.|+|||||++.+.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35699999999999999998865

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.57  E-value=0.053  Score=45.45  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=19.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...|.|.|.+|+|||||++.+.
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5689999999999999998654

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=93.57  E-value=0.038  Score=46.92  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=93.55  E-value=0.039  Score=43.21  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.++|.+|+|||||++.+.+
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=93.54  E-value=0.041  Score=48.07  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -+.++|++|+|||||++-+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999999988653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.51  E-value=0.042  Score=47.84  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            4789999999999999998865

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=93.50  E-value=0.039  Score=47.71  Aligned_cols=21  Identities=14%  Similarity=0.252  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .++++|++|+|||||++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999998864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=93.49  E-value=0.042  Score=43.46  Aligned_cols=22  Identities=18%  Similarity=0.093  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+|+++|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.47  E-value=0.043  Score=47.76  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999998865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=93.45  E-value=0.028  Score=47.67  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999988753

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=93.39  E-value=0.05  Score=41.94  Aligned_cols=24  Identities=17%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|.+.|.+|+||||+.+.+...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999998764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.37  E-value=0.044  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++|.|+.|+|||+|+..+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999999754

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.35  E-value=0.081  Score=48.45  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998754

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.34  E-value=0.045  Score=43.45  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++.|++|+|||+|+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999888863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=93.33  E-value=0.046  Score=44.69  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+...+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4699999999999999998874

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.33  E-value=0.089  Score=38.86  Aligned_cols=23  Identities=13%  Similarity=0.041  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..|++.|++|+|||++.+.+...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999988754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=93.32  E-value=0.068  Score=39.46  Aligned_cols=22  Identities=9%  Similarity=0.031  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|++|+|||++++.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~   49 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHK   49 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCC
T ss_pred             CcEEEECCCCccHHHHHHHHHH
Confidence            3599999999999999887654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=93.32  E-value=0.044  Score=44.84  Aligned_cols=21  Identities=29%  Similarity=0.226  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        53 ~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           53 GILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            599999999999999999874

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=93.32  E-value=0.047  Score=43.91  Aligned_cols=22  Identities=27%  Similarity=0.164  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998874

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.30  E-value=0.048  Score=41.53  Aligned_cols=21  Identities=14%  Similarity=0.097  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999998753

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=93.30  E-value=0.042  Score=47.41  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.++++|++|+|||||++.+.+-
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            38999999999999999999854

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=93.30  E-value=0.048  Score=41.65  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|.+|+||||+...+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=93.28  E-value=0.053  Score=47.71  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.2

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHh
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ....+|++++|.+++||||+++++.
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHHH
Confidence            3557999999999999999999875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=93.27  E-value=0.033  Score=42.30  Aligned_cols=22  Identities=23%  Similarity=0.132  Sum_probs=15.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998863

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=93.24  E-value=0.044  Score=47.52  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||||++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=93.24  E-value=0.05  Score=47.31  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            4789999999999999988864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=93.21  E-value=0.053  Score=41.31  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|++.|.+|+||||+.+.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.19  E-value=0.044  Score=46.28  Aligned_cols=22  Identities=27%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --+++.|++|+|||+|++.+..
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=93.16  E-value=0.051  Score=44.18  Aligned_cols=23  Identities=26%  Similarity=0.206  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|+++|.+|+||||+...+..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.15  E-value=0.045  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++|.|+.|+|||+|+..+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=93.10  E-value=0.049  Score=44.88  Aligned_cols=22  Identities=23%  Similarity=0.158  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+++.|++|+|||+|++.+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.04  E-value=0.049  Score=45.81  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.|+|.+|+|||||++.+.+
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=93.02  E-value=0.052  Score=47.03  Aligned_cols=23  Identities=26%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .--+.++|..|+||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            35788999999999999998764

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=92.97  E-value=0.051  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.536  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999988753

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=92.97  E-value=0.037  Score=47.78  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            5789999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=92.97  E-value=0.064  Score=43.66  Aligned_cols=22  Identities=18%  Similarity=0.226  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...|.++|.+|+||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999887

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=92.94  E-value=0.058  Score=42.39  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|+++|.+|+||||+.+.+..
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998763

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=92.93  E-value=0.073  Score=43.98  Aligned_cols=22  Identities=32%  Similarity=0.523  Sum_probs=18.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ...+++.|++|+|||+++..+.
T Consensus        67 ~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999998554

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=92.91  E-value=0.059  Score=43.39  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|++.|.+|+||||+++.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.88  E-value=0.18  Score=44.26  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|+++|.+|+||||+.+++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999999875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=92.88  E-value=0.058  Score=44.36  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||++++.+..
T Consensus        52 ~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           52 NILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998864

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=92.87  E-value=0.056  Score=46.53  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            88999999999999999988663

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=92.85  E-value=0.056  Score=45.31  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|++.+.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=92.84  E-value=0.056  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .--+.|+|.+|+|||||+..+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            35688999999999999998763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.84  E-value=0.057  Score=44.42  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --++++|++|+|||||+..+..
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3588999999999999999874

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=92.80  E-value=0.078  Score=45.18  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+-|.++|++|+|||||++.+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999998874

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=92.78  E-value=0.05  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .++++|++|+|||||++.+.+-
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999988854

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=92.73  E-value=0.043  Score=50.74  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      .++++|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=92.70  E-value=0.062  Score=45.64  Aligned_cols=22  Identities=32%  Similarity=0.285  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+++.|++|+|||+|++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=92.65  E-value=0.078  Score=41.69  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+.|++.|.+|+||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=92.65  E-value=0.094  Score=42.11  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=18.7

Q ss_pred             eeeeE-EEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKI-SLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KI-vllGd~~vGKTSLi~r~~~  122 (215)
                      ...|| +++|++|+||+|...++..
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34454 5689999999999888764

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.64  E-value=0.66  Score=36.30  Aligned_cols=52  Identities=6%  Similarity=0.021  Sum_probs=37.1

Q ss_pred             EEEEEEEecCCC-CCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          147 RIAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       147 ~~~l~i~Dt~G~-e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                      .+.+-|.|+++. ...  .....+..+|.+|++... +..++..+...++.+++..
T Consensus        67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~~~~~~~l~~~~  119 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDALMLTIETLQKLG  119 (209)
T ss_dssp             GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHHHHHHHHHHHTC
T ss_pred             cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHHHHHHHHHHhcc
Confidence            467889999886 432  334456789999988874 5667888888887777643

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.57  E-value=0.068  Score=44.18  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|++.|.+|+||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999885

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=92.56  E-value=0.068  Score=43.63  Aligned_cols=23  Identities=26%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...+++.|++|+|||+|+..+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999998875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=92.55  E-value=0.067  Score=43.86  Aligned_cols=22  Identities=23%  Similarity=0.152  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.|+++|.+|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=92.54  E-value=0.049  Score=46.02  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++++|..|+|||||++.+.+.
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4678999999999999999965

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=92.51  E-value=0.064  Score=47.36  Aligned_cols=22  Identities=18%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++++|+.|+|||||++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=92.49  E-value=0.072  Score=42.54  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ...|+++|++|+|||+|...+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356999999999999999999854

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=92.49  E-value=0.064  Score=44.70  Aligned_cols=22  Identities=18%  Similarity=0.125  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-+++.|++|+|||+|++.+..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3567779999999999998874

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.43  E-value=0.24  Score=38.07  Aligned_cols=51  Identities=14%  Similarity=-0.000  Sum_probs=35.4

Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                      .+.+-|.|+++..  .......+..+|.++++...+.. + ..+...++.+++..
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~  125 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQ  125 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHH
Confidence            3678899999765  33444556779999999876544 3 66777777666543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=92.40  E-value=0.037  Score=47.82  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999998865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=92.38  E-value=0.037  Score=47.94  Aligned_cols=50  Identities=10%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI  212 (215)
Q Consensus       157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~  212 (215)
                      .+++|..+...++++++++++|+|++|.+     ..|.+++.++.. +.|+++| +|
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK  105 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNK  105 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEEC
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEC
Confidence            46788899999999999999999999853     578888888764 5665554 44

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.30  E-value=0.073  Score=44.38  Aligned_cols=22  Identities=18%  Similarity=0.161  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|++.+.+
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHH
Confidence            3589999999999999998875

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=92.27  E-value=0.091  Score=42.66  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+||++.|.+|||||+++..+.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            6899999999999999976554

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.27  E-value=0.12  Score=47.53  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            7899999999999999988754

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=92.27  E-value=0.065  Score=45.34  Aligned_cols=22  Identities=23%  Similarity=0.146  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|++.+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=92.26  E-value=0.073  Score=47.28  Aligned_cols=22  Identities=14%  Similarity=0.324  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7899999999999999988865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=92.24  E-value=0.11  Score=42.90  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            46899999999999999988753

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=92.20  E-value=0.096  Score=39.33  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.|++.|.+|+||||+.+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998854

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.18  E-value=0.069  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|+.|+|||||++-+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            7899999999999999988754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.15  E-value=0.065  Score=45.18  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=92.06  E-value=0.078  Score=48.05  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .++++|+.|+|||||++.+.+-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999998753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.04  E-value=0.1  Score=47.77  Aligned_cols=22  Identities=14%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++-+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            7899999999999999876643

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.01  E-value=0.084  Score=44.28  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||++++.+...
T Consensus        61 ~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988743

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=92.01  E-value=0.099  Score=41.82  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ......|.++|.+|+||||+...+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999998874

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=91.95  E-value=0.084  Score=44.61  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||+++..+...
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999988753

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=91.94  E-value=0.081  Score=44.42  Aligned_cols=21  Identities=33%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -.++++|..|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999875

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=91.93  E-value=0.079  Score=44.90  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.+++.|++|+|||+|+..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998874

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=91.93  E-value=0.1  Score=42.43  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+.|.+.|++|+||||+.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999886

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=91.89  E-value=0.1  Score=41.42  Aligned_cols=20  Identities=30%  Similarity=0.652  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      =+++.|++|+|||+|+.+++
T Consensus        32 l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            57899999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.73  E-value=0.088  Score=44.72  Aligned_cols=21  Identities=24%  Similarity=0.102  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++.|++|+|||+|++.+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998875

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=91.71  E-value=0.096  Score=43.95  Aligned_cols=21  Identities=24%  Similarity=0.263  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        57 ~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            489999999999999998864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.71  E-value=0.088  Score=46.91  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||+++..+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998764

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=91.67  E-value=0.11  Score=44.69  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+|+|++|+|||+|...+..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=91.66  E-value=0.12  Score=38.69  Aligned_cols=19  Identities=21%  Similarity=0.329  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      .+++|+.|+|||+|+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5799999999999999865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=91.58  E-value=0.097  Score=44.22  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46899999999999999998853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=91.48  E-value=0.049  Score=44.19  Aligned_cols=20  Identities=30%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|++|+|||+|++.+..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998874

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=91.46  E-value=0.1  Score=43.88  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...+++.|++|+|||+|++.+..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            34699999999999999998874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.45  E-value=0.074  Score=43.30  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|+|.|..|+||||+++.+..
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=91.43  E-value=0.11  Score=42.09  Aligned_cols=23  Identities=13%  Similarity=0.158  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..+++.|++|+|||+|++.+...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~   52 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYL   52 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEECCCCCcHHHHHHHHHHh
Confidence            46899999999999999988754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=91.40  E-value=0.1  Score=47.81  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            7899999999999999988754

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=91.35  E-value=0.12  Score=42.75  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+.|+|.|.+|+||||+.+.+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998863

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=91.30  E-value=0.11  Score=43.78  Aligned_cols=21  Identities=29%  Similarity=0.284  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      --++++|.+|+||||++..+.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            468899999999999999876

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=91.23  E-value=0.11  Score=44.57  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      --+.++|++|+|||+|+..+...
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36789999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=91.23  E-value=0.12  Score=44.21  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|++|+|||+|...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=91.19  E-value=0.12  Score=44.37  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+++.|++|+|||+++..+..
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=91.18  E-value=0.13  Score=40.14  Aligned_cols=23  Identities=17%  Similarity=0.524  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .=+++.|++|+||||+...+...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999998764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=91.14  E-value=0.12  Score=45.09  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=91.09  E-value=0.13  Score=46.78  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =.+.++|+.|+|||||++-+.+-
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=91.03  E-value=0.15  Score=43.50  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|+|.|++|||||+|...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            4789999999999999999753

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=91.00  E-value=0.12  Score=44.35  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|+|.|++|+|||||...+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=90.97  E-value=0.13  Score=43.17  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-.+++.|++|+|||.|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=90.93  E-value=0.13  Score=43.77  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+++|++|+|||+|...+..
T Consensus        12 ~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            478999999999999999874

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=90.90  E-value=0.14  Score=46.42  Aligned_cols=22  Identities=18%  Similarity=0.306  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|+|.|.+|+|||+|+..+...
T Consensus       149 ~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          149 WVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEcCCCCCHHHHHHHHHhc
Confidence            4889999999999999998754

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=90.88  E-value=0.13  Score=46.38  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+.++|++|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=90.85  E-value=0.12  Score=45.26  Aligned_cols=20  Identities=20%  Similarity=0.411  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      -+.|+|++|+|||+|+..++
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            58899999999999999886

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=90.84  E-value=0.09  Score=43.65  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+++.|++|+|||+|+..+..
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=90.83  E-value=0.1  Score=41.92  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+++..+..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999887763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=90.72  E-value=0.13  Score=43.90  Aligned_cols=23  Identities=26%  Similarity=0.140  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...+++.|++|+|||+|++.+..
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999874

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=90.70  E-value=0.14  Score=42.23  Aligned_cols=22  Identities=18%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+++.|++|+|||+++..+...
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            3999999999999999988753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=90.68  E-value=0.13  Score=46.51  Aligned_cols=19  Identities=26%  Similarity=0.523  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      ++++|++|+|||||++.|+
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=90.68  E-value=0.12  Score=51.95  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ||.++|.+|+|||||++-+..
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            889999999999999998874

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=90.62  E-value=0.092  Score=44.05  Aligned_cols=21  Identities=29%  Similarity=0.124  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            699999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=90.61  E-value=0.16  Score=39.60  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++++|.+++|||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999865

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=90.59  E-value=0.14  Score=43.85  Aligned_cols=22  Identities=23%  Similarity=0.172  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|++|+|||+|++.+..
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4689999999999999998874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=90.52  E-value=0.15  Score=43.56  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+++.|++|+|||++++.+..
T Consensus        52 ~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988763

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=90.51  E-value=0.16  Score=39.21  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|.+.|.+|+||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998864

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=90.51  E-value=0.15  Score=43.08  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++.|++|+|||+++..+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998864

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=90.45  E-value=0.16  Score=39.71  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...|.+.|.+|+||||+...+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999988764

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=90.30  E-value=0.15  Score=45.11  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --+++.|++|+|||+|++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998874

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=90.27  E-value=0.12  Score=44.22  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=18.2

Q ss_pred             eEEE--EcCCCCCHHHHHHHHhcC
Q 028037          102 KISL--LGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvl--lGd~~vGKTSLi~r~~~~  123 (215)
                      -+++  .|++|+|||+|++.+...
T Consensus        52 ~~li~i~G~~G~GKT~L~~~~~~~   75 (412)
T 1w5s_A           52 NMIYGSIGRVGIGKTTLAKFTVKR   75 (412)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEEeCcCcCCCCHHHHHHHHHHH
Confidence            4566  799999999999988743

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=90.19  E-value=0.17  Score=43.59  Aligned_cols=19  Identities=21%  Similarity=0.200  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      .+++|+.|+|||||+..+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5689999999999999875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.18  E-value=0.16  Score=41.76  Aligned_cols=21  Identities=29%  Similarity=0.226  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||+++..+...
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~   65 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHE   65 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHH
Confidence            999999999999999988743

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=90.14  E-value=0.16  Score=43.85  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..++|.|++|+|||+|++.+..
T Consensus       149 ~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=90.11  E-value=0.15  Score=46.31  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --++++|++|+|||+|++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998763

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=90.08  E-value=0.16  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.++|.|++|+|||+|++.+..
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            3689999999999999998874

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=90.05  E-value=0.17  Score=41.61  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|++|+|||+++..+..
T Consensus        41 ~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHH
Confidence            89999999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=90.04  E-value=0.19  Score=40.22  Aligned_cols=22  Identities=27%  Similarity=0.522  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++-|..|+||||+++.+..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.01  E-value=0.22  Score=38.96  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ..+.|.+.|..|+||||+.+.+...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3678999999999999999988753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=90.00  E-value=0.17  Score=46.75  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =.+.++|+.|+|||||++-+.+-
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            36899999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.97  E-value=0.17  Score=44.81  Aligned_cols=21  Identities=29%  Similarity=0.298  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|++.|++|+|||+|++.+.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=89.94  E-value=0.17  Score=46.09  Aligned_cols=22  Identities=27%  Similarity=0.513  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|+.|+|||||++-+.+-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999998864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=89.92  E-value=0.063  Score=46.46  Aligned_cols=50  Identities=6%  Similarity=0.094  Sum_probs=38.2

Q ss_pred             CCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEE-ee
Q 028037          157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF-HI  212 (215)
Q Consensus       157 G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlV-a~  212 (215)
                      .++.|......++.+++++++|+|++|.++     .|.+++.++.. +.|+++| +|
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK  107 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNK  107 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEEC
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEC
Confidence            578899999999999999999999999874     57777777664 5666555 54

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=89.92  E-value=0.19  Score=45.13  Aligned_cols=22  Identities=36%  Similarity=0.674  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++++|++|+|||+|++.+..+
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHhh
Confidence            7999999999999999988643

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=89.91  E-value=0.094  Score=44.00  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        47 ~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            499999999999999998874

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.85  E-value=0.24  Score=49.77  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ++.++|++|+|||||++-+.+
T Consensus       446 ~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             EEEEEECSSSCHHHHHHHHTT
T ss_pred             EEEEEecCCCcHHHHHHHhcc
Confidence            789999999999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-15
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-13
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-12
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	9e-12
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-11
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-11
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-11
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-09
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-09
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-08
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-08
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	6e-08
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-08
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	4e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-07
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-07
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-06
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-06
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-06
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-06
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-06
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-06
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-06
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-06
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-05
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-05
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-05
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	6e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-04
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	2e-04
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-04
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	7e-04
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-04
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-04
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-04
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	0.001
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	0.001
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	0.003
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.004

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GKT  + ++  +      +   G++   +T+ + G RI   IWD  G  
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + A+ I+ ++D+T+  + ++I  W     +   
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS 109

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (151), Expect = 4e-13
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           +KI L+GD  +GK+  +V++V ++     +   G++   KT+ + G ++   IWD  G  
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + A+ I+ ++D+T   T  +I  W+    +   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN 105

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-12
 Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           V+ K+ L+GD  +GKT  +V++          +   G++  NK L V G ++   +WD  
Sbjct: 5   VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 64

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q
Sbjct: 65  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (143), Expect = 9e-12
 Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+G+  +GK+  ++++  +      +   G++   KT+ + G  +   IWD  G  
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + +  I+ ++D+T + + N +  W  E  ++  
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT 109

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 95  DSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIW 153
           +  L +LKI ++G+  +GK+S ++++  +          G++   KT+ V G +   +IW
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           D  G  R     P   + A  ++ ++D+T R T   +  W +E   +  
Sbjct: 62  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT 110

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 2e-11
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI L+G+  +GKT  V ++             G++ + KT+ + G ++   IWD  G  
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + A A++  +D+T   +   +  W  E  ++  
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS 108

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++G+  +GKTSF+ +Y  +      +   G++   KT+     RI   IWD  G  
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + A+  + M+D+T+  + N++  W ++ + ++ 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-09
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  + ++   +         G+    + + V G +I   IWD  G  
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           R         + A   L ++D+T R T N +  W ++AR    
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 107

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++G+   GK+  + +++  + ++ S    G+   +K + V G  +   IWD  G  
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
           R         + A   L ++D+TSR T N++  W ++AR   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA 107

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S K+ LLG+  +GKTS V++Y  N+  ++ +   G + + K L + G R+  +IWD  G 
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
            R     PI  +D+   + ++D+T   +   +  W  E RK   
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG 106

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ L+GD  +GK++ + ++  NE    S    G+    +++ V G  I   IWD  G  
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
           R         + AV  L ++D+    T  ++  W  E R 
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRD 104

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (114), Expect = 6e-08
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ +LGD  +GKTS + +YV  +   +     G + + K +MV    +   IWD  G  
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214
           R         + A   + +FD+T+  T  ++  W  E            F  +++
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 117

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 6e-08
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)

Query: 98  LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +   K+ LLG+  +GK+S V+++V  +  E      G   + +T+ +    + F IWD  
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
           G  R     P+  + A A + ++D+T+  +      W  E ++  
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA 108

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 4e-07
 Identities = 14/102 (13%), Positives = 36/102 (35%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + K+ ++G   +GK++  ++++ +           +   K   V G      I D  G  
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 65

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                     +     L +F +  R + N +   +++  +  
Sbjct: 66  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK 107

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I +LG    GKT+ + K    +   ++   G N+      V    + F++WDVGG  +
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
                         ++F+ D   R  ++      
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQEL 102

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K  ++GD  +GK+  ++++     Q       G+    + + + G +I   IWD  G  
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                     + A   L ++D+T R T N +  W  +AR+
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 103

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           S+K+ LLG+  +GK+S V+++V N+  E      G   + + + +    + F IWD  G 
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
            R     P+  ++A A L ++D+T   +      W  E  +   
Sbjct: 63  ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS 106

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 11/106 (10%), Positives = 35/106 (33%)

Query: 97  DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
           +L + K+ ++GD  +GK++  +++              +   K   +        + D  
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTA 60

Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
           G            +     L ++ +T + +   +  ++    +   
Sbjct: 61  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 106

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 1e-06
 Identities = 12/101 (11%), Positives = 34/101 (33%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           ++ ++G   +GK++  ++++ +           +   K  ++        I D  G    
Sbjct: 7   RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                   +     L +F +T R +   I  +  +  +   
Sbjct: 67  GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKD 107

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
           V++K+ ++G+  +GK+S + +Y      +   +  G++ + + + V    +   +WD  G
Sbjct: 1   VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 60

Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                       + A A + +F  T R +  +I  W  +      
Sbjct: 61  QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG 105

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 24/103 (23%), Positives = 46/103 (44%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           V  KI ++GD Q GKT+ +  +  +    +           +  +   RI  S+WD  G 
Sbjct: 1   VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
               +  P++  D+ A+L  FD++   TL+S++  +    +  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 103

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 2e-06
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 11/113 (9%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMV----------QGARIA 149
           +K+  LGD  +GKT+F+ +Y  N+   + +   G++   K ++           +  ++ 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
             +WD  G  R         +DA+  L MFDLTS+ +  ++  W S+ +    
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 118

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.1 bits (100), Expect = 4e-06
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 2/116 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           LK+ +LGD  +GKTS + +YV ++  Q+    +    L  +  +         +WD  G 
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII 214
            R         + A   + ++D+T+  +  +I  W  E      V     F  +I+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 118

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           L+I +LG    GKT+ + +    E   +    G N+      +    +  ++WD+GG + 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 73

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              +      D  A++F+ D T +  +++         +  +
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE 115

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 5e-06
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           K+  LG+  +GKTS + +++ +          G++ ++KT+ ++   I   +WD  G  R
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
               +P   +D+ A + ++D+T+  +      W  + R 
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT 100

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I ++G    GKT+ + K    E   +       +      V+   I+F++WDVGG  +
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSE 196
                    ++   ++F+ D   R  +N        
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMR 92

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-06
 Identities = 17/103 (16%), Positives = 38/103 (36%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N+          +    T+M+ G      ++D  G  
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                 P++       L  F + S  +  ++   +      + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 6e-06
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            K+ LLGD  +GK+S + +YV N+   +     G+  +NK L V G  +   IWD  G  
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQV 203
           R         + +   L  F +    +  ++  W  E   +  V
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV 110

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 16/104 (15%), Positives = 37/104 (35%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           + LK  ++GD  +GKT  ++ Y  +           +    ++ V G +    ++D  G 
Sbjct: 8   LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                  P++       L  F + +  +  ++   +    K   
Sbjct: 68  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA 111

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 13/100 (13%), Positives = 35/100 (35%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ ++G   +GK++  ++ + N           +   K +++ G      I D  G    
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                   +     L +F + +  +   I  +  + ++  
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 19/102 (18%), Positives = 39/102 (38%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           ++K  ++GD  +GKT  ++ Y  N           +  +  +MV G  +   +WD  G  
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                 P++       L  F L S  +  ++   +    + +
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH 106

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 15/101 (14%), Positives = 37/101 (36%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ +LG   +GK++  V++V             +   K + V  +     I D  G  + 
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                +  K+    + ++ L ++ +   I     +  +  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 13/98 (13%), Positives = 38/98 (38%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ ++G   +GK++  ++++ +E     +    +   K +++ G  +   I D  G    
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                   +     L +F +T   +  +   +  +  +
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 103

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           LK+ LLGD  +GK+S + ++V +          G + + KT+  Q     F IWD  G  
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
           R     P+  + + A + ++D+T   T +++  W  E R+  
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG 106

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 16/101 (15%), Positives = 37/101 (36%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+ +LG   +GK++  V++V             +   K + V   +    I D  G  + 
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                +  K+      ++ +T++ T N +     +  +   
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD 105

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 4/110 (3%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           K+  LG    GKT+ +     +                +  +    I F+ +D+GG  ++
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGNIKFTTFDLGGHIQA 57

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH 211
                    +   I+F+ D       +             ++        
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVIL 107

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 30/81 (37%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           S KI++LG   +GK+S  +++V  +   S      N   K + V G      + D  G  
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63

Query: 160 RSFDHVPIACKDAVAILFMFD 180
                      D    + ++ 
Sbjct: 64  EYSIFPQTYSIDINGYILVYS 84

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +KI LLG  + GK++F+ +      +   +  G++  +     +   + F + DVGG   
Sbjct: 3   VKILLLGAGESGKSTFLKQMRIIHGQDPTK--GIHEYD----FEIKNVPFKMVDVGGQRS 56

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL 208
                        +ILF+   +    +       +   +   + +  +
Sbjct: 57  ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIV 104

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
            K+ ++G    GKT+ + ++  NE   +    G N+    +        F +WD+GG   
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN----NTRFLMWDIGGQES 71

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
                     +   ++ + D T R  ++       +      
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED 113

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
            KI ++GD  +GKT    ++      +R+    G++   + + + G RI   +WD  G  
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 160 RSFD-HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
           R     V    ++  A++F++D+T+  + +S+  W  E ++ 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 104

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 16/100 (16%), Positives = 40/100 (40%)

Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
           ++++ G   +GK+S V+++V      S      +   + +    +     I D  G  + 
Sbjct: 4   RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63

Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
                ++     A + ++ +TSR +L  +   Y +  +  
Sbjct: 64  PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 103

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 80  GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
           GL+ + R   S  D +     ++I LLG    GKT+ + +    +        G      
Sbjct: 1   GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FN 51

Query: 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWY 194
              VQ      ++WD+GG  +   +     ++   ++++ D   R          
Sbjct: 52  IKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQEL 106

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + K+  LG    GKT+ +     +   + +          +  +  A + F+ +D+GG  
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHI 68

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTK 205
           ++             I+F+ D      L               +  
Sbjct: 69  QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 114

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 8e-04
 Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           L++ +LG    GKT+ + K+ G + +         L      ++      +IWDVGG   
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLEHRGFKLNIWDVGGQKS 58

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              +     +    ++++ D   R  +              +
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER 100

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 20/101 (19%), Positives = 40/101 (39%)

Query: 99  VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
           +  K+ ++GD   GKT  ++    ++                + V G ++  ++WD  G 
Sbjct: 1   IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL 60

Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199
                  P++  D   IL  F + S  +L +I   ++   K
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 101

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
           + ++ LLG  + GK++ V +        +    G+         Q  ++ F ++DVGG  
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHVVLTS---GIFETK----FQVDKVNFHMFDVGGQR 58

Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL 208
                      D  AI+F+   +S   +       +  ++   + K   
Sbjct: 59  DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 107

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           ++I +LG    GKT+ + +    E   ++   G         V    + F +WD+GG + 
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTS 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202
              +      +  A++++ D   R  +           +  +
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE 103

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 12/110 (10%), Positives = 38/110 (34%), Gaps = 1/110 (0%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           +K+++ G   +GK++ VV+++             +       +    ++  I D      
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDT-AGQE 61

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFF 210
                    +     + ++D+T R +   ++   +   +  +    +L  
Sbjct: 62  DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 111

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
           LK+ LLG  + GK++F+ +         +   G+             + F + DVGG   
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGII----EYPFDLQSVIFRMVDVGGQRS 57

Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
                    ++  +I+F+  L+    +       +   + 
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.93
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.92
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.9
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.89
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.89
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.87
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.85
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.84
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.84
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.82
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.82
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.78
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.74
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.69
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.66
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.65
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.57
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.55
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.52
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.39
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.32
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.23
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.21
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.1
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.04
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.03
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.94
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.85
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.78
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.75
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.71
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.67
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.59
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.58
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.57
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.5
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.42
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.39
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.28
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.22
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.21
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.07
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.98
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.94
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.83
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.79
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.55
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	97.51
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.08
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.07
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.68
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.49
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.4
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.34
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.27
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.2
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.19
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.18
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.15
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.13
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.1
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.09
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.03
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.02
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.01
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.98
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.94
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.92
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	95.91
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.89
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.85
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.84
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.83
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.79
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.76
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.73
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.72
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.7
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.64
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.58
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.57
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.54
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.53
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	95.5
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.44
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.41
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.4
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.37
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.34
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.33
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.26
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.24
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.11
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.1
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.04
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.94
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.88
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.88
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	94.82
d2awna2	232	Maltose transport protein MalK, N-terminal domain	94.76
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.75
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.75
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.72
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	94.72
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.64
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.63
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.57
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.52
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.5
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.46
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.17
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.07
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.03
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.02
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.01
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	93.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	93.92
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	93.89
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	93.84
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.77
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	93.75
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.65
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.61
d1okkd2	207	GTPase domain of the signal recognition particle r	93.61
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.56
d1j8yf2	211	GTPase domain of the signal sequence recognition p	93.52
d2qy9a2	211	GTPase domain of the signal recognition particle r	93.5
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.48
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.47
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.41
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.38
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.24
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	93.14
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.06
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.02
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	92.87
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.71
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.71
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	92.67
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.63
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.56
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	92.55
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	92.43
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.21
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.01
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.92
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.75
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.61
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.86
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.83
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	90.59
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.32
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.04
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	89.94
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.84
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	89.66
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.6
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	89.59
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	89.57
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.39
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	89.33
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.0
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	88.79
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	88.72
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	88.18
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.0
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.74
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.7
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	87.41
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.25
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	86.82
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	86.62
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	86.53
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.21
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.69
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	85.68
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	85.48
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	85.32
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	85.25
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.11
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.04
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.22
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	84.14
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	83.26
d1tuea_	205	Replication protein E1 helicase domain {Human papi	81.55
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	80.58

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=184.88  Aligned_cols=113  Identities=24%  Similarity=0.365  Sum_probs=101.6

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..|||+++|++|||||||+++|++++|. .+.+|+|.++..+.+..++..+.+.+||++|++.+..+++.++++++++++
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII   81 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhh
Confidence            4789999999999999999999999999 777899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||++|++||+++.+|+.++.+.. +++|++||+.
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgn  115 (170)
T d1i2ma_          82 MFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGN  115 (170)
T ss_dssp             EEETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEE
T ss_pred             ccccccccccchhHHHHHHHhhcc-CCCceeeecc
Confidence            999999999999999999998876 5799998874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-26  Score=178.26  Aligned_cols=116  Identities=12%  Similarity=0.174  Sum_probs=103.4

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +...+||+++|++|||||||++||++++|.+.+.++..+...+.+.+++..+.+.+||++|++++..++..+++++|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            34579999999999999999999999999944444456777788999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|+..+.+.. ..++|++||+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgn  119 (173)
T d2fn4a1          83 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGN  119 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             eecccccccccchhhhhhHHHHHHhccCCCceEEEEE
Confidence            9999999999999999999987654 46799888864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-26  Score=181.32  Aligned_cols=114  Identities=16%  Similarity=0.273  Sum_probs=99.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      |..+||+++|++|||||||++||++++|. ++.+|++ +.......+++..+.+++||++|+++|..+++.+|+++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            45799999999999999999999999998 6677777 455677788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|+.+......+++|+++|+-
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgn  115 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT  115 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEec
Confidence            999999999999998655554444447799988764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-26  Score=178.18  Aligned_cols=113  Identities=27%  Similarity=0.508  Sum_probs=98.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||++||++++|. ++.+|.+.++..+.+..++..+.+++||++|++++..+++.+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            689999999999999999999999999 7788899999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|++.+........|++||+.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgn  116 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN  116 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEE
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeecc
Confidence            9999999999999999999887767788888753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=177.85  Aligned_cols=113  Identities=20%  Similarity=0.418  Sum_probs=106.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|++++|. .+.++.+.++..+.+.+++..+++++|||+|+++|..+++.++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            699999999999999999999999998 7778889999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++++.||+++..|+..+.+.....+|++||+.
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgn  118 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGN  118 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEe
Confidence            9999999999999999999888777899888864

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-26  Score=180.47  Aligned_cols=115  Identities=16%  Similarity=0.316  Sum_probs=100.1

Q ss_pred             CCceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcE
Q 028037           96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA  174 (215)
Q Consensus        96 ~~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~  174 (215)
                      +....+||+++|++|||||||++||+++.|. ++.+|++ ++..+.+..++..+++++||++|++.|..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            4566899999999999999999999999999 6777776 5567778888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVG-WYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~-wl~~i~~~~~~~~piIlVa~  212 (215)
                      +++|||+++++||+++.. |++.++.. .+++|++||+.
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgn  121 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGT  121 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEE
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeee
Confidence            999999999999999865 55555555 46889888753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=174.17  Aligned_cols=113  Identities=17%  Similarity=0.177  Sum_probs=103.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      +.+||+++|++|||||||+++|++++|. .+.+|.+.++ .+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            5789999999999999999999999999 6778888775 5778899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||+++++||+++..|++++.++. ..++|++||+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  117 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN  117 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEE
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeecc
Confidence            999999999999999999997764 46799988864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=6e-26  Score=176.67  Aligned_cols=114  Identities=10%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      .+.|||+++|++|||||||+++|++++|. ++.+|.+. .+.+.+.+++..+.+++||++|++.+..+++.+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED-SYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE-EEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceee-ccccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            45799999999999999999999999999 66666664 45677888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|||++|++||+++..|+.++.+.. ..++|+|||+.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgn  117 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN  117 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEec
Confidence            9999999999999999999997764 46799888763

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-26  Score=176.51  Aligned_cols=111  Identities=15%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      |||+++|++|||||||+++|.+.++..+.++.+ +.+.+.+.+++..+.+.+||++|++++..++..|++++|++|+|||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            799999999999999999999988765555555 4556788899999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +++++||+++..|+.++.+... .++|++||+.
T Consensus        81 ~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  113 (168)
T d2gjsa1          81 VTDKGSFEKASELRVQLRRARQTDDVPIILVGN  113 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEE
T ss_pred             ccccccccccccccchhhcccccccceEEEeec
Confidence            9999999999999999988754 6789988863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.1e-26  Score=176.32  Aligned_cols=114  Identities=14%  Similarity=0.206  Sum_probs=102.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ++.+||+++|++|||||||++||++++|. ++.++.+..+ .+.+.+++..+.+++||++|++.+..+++.|++++|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            46799999999999999999999999999 6667777555 567788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|||++|++||+++..|+.++.+.. .+++|++||+.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgn  116 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN  116 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEE
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEE
Confidence            9999999999999999999997754 46899888874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-26  Score=177.23  Aligned_cols=112  Identities=18%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..||+++|++|||||||+++|.++.|. .+.+|.+ +...+...+++..+.++|||++|++.|..+++.|++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            689999999999999999999999999 6666766 55567788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+...+++|++||+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgn  114 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGN  114 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeee
Confidence            9999999999998655444443447899998863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.9e-26  Score=175.61  Aligned_cols=112  Identities=20%  Similarity=0.453  Sum_probs=105.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      |||+++|++|||||||++||.+++|. ++.++++.+........++..+.+.+||++|++++...++.++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999 77888888888888888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |+++++||+++..|+.++.+...+++|++||+.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgn  113 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN  113 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEec
Confidence            999999999999999999988778899999864

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=5.5e-26  Score=175.64  Aligned_cols=112  Identities=16%  Similarity=0.339  Sum_probs=105.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||++||.+++|. ++.+|++.++..+....++..+.+.+||++|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            589999999999999999999999998 7788999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++|++||+++..|++++.++. +++|++||+.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgn  114 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQN  114 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEE
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeec
Confidence            99999999999999999998876 5688888853

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.5e-25  Score=173.69  Aligned_cols=115  Identities=25%  Similarity=0.422  Sum_probs=108.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ++.+||+++|++|||||||++||++++|. ++.+|.+.++.......++....+.+||++|++++..++..++++++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999999 77788898888888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||++++.|+.++.+....+.|++||+.
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgn  117 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN  117 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEE
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecc
Confidence            999999999999999999999998888999988864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-26  Score=175.27  Aligned_cols=113  Identities=21%  Similarity=0.436  Sum_probs=106.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|++++|. ++.++.+.++....+.+++..+.+++||++|++++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            589999999999999999999999999 6777888899999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++|++||+.+..|+..+.+......|+++|+.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgn  117 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN  117 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcc
Confidence            9999999999999999999988888899999875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-25  Score=173.52  Aligned_cols=114  Identities=23%  Similarity=0.434  Sum_probs=106.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ..+||+++|++|||||||+++|++++|. .+.+|.+.++..+.+..++..+.+++||++|++++..+++.+++++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            4689999999999999999999999999 777899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      |||++|++||+++..|+.++.+......|+++|..
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~n  116 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN  116 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeec
Confidence            99999999999999999998888777788777754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=174.42  Aligned_cols=114  Identities=13%  Similarity=0.230  Sum_probs=102.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ++.+||+++|++|||||||++||++++|. .+.++++ +++.+...+++..+++++||++|++.+..++..+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            46899999999999999999999999999 5555555 667788889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +|||+++++||+++..|+.++.+... +++|++||+.
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgn  116 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN  116 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEE
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEE
Confidence            99999999999999999999987653 6799988863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1e-25  Score=175.08  Aligned_cols=112  Identities=24%  Similarity=0.511  Sum_probs=105.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.+++|. .+.++.+.++..+.+..++..+++++|||+|++++..+++.+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            689999999999999999999999998 7778889999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ||+++++||+++..|+..+.+....+.|+++|+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~  117 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVG  117 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEE
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEE
Confidence            999999999999999999988887889988874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.8e-26  Score=177.56  Aligned_cols=113  Identities=20%  Similarity=0.467  Sum_probs=83.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|+++||||||+++|++++|. ++.++.+.++..+.+.+++..+.+++||++|++.|..+++.+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            589999999999999999999999998 7778899999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++++.||+.+..|+.++......+.|+++|+.
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~  119 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGN  119 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEe
Confidence            9999999999999999999888878899888864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.3e-25  Score=176.92  Aligned_cols=113  Identities=19%  Similarity=0.442  Sum_probs=107.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+|+|++|||||||+++|++++|. ++.++.+..+..+.+.+++..+.++||||+|+++|..+++.++++++++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            599999999999999999999999999 7788999999888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++++++|+++..|+..+.+....++|++||+.
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~n  119 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN  119 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEe
Confidence            9999999999999999999888878899988875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=174.90  Aligned_cols=113  Identities=23%  Similarity=0.460  Sum_probs=104.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.++.|. ++.++.+.+...+.+.+++..+.+.+||++|+++|..++..++++++++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            689999999999999999999999998 7777888888889999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++++||+.+..|++++.++..+++|++||+.
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgn  117 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGN  117 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEe
Confidence            9999999999999999999999888899999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9e-26  Score=174.59  Aligned_cols=113  Identities=24%  Similarity=0.499  Sum_probs=100.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      -+||+++|++|||||||+++|++++|. .+.+|.+.++..+.+.+++..+++++|||+|++.|..+++.+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            489999999999999999999999998 7788999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||.+|++||+++..|+..+........|+++++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~  115 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN  115 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecc
Confidence            9999999999999999999988877888877764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-25  Score=172.35  Aligned_cols=115  Identities=25%  Similarity=0.538  Sum_probs=97.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc-cccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~-~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ..|||+++|+++||||||+++|++++|. ++ .++++.++....+..++..++++||||+|++++..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            3799999999999999999999999987 44 456788999889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      +|||+++++||+.+..|+.++.+....+.|++||+.-
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k  121 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNK  121 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEee
Confidence            9999999999999999999998888788899988653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=174.95  Aligned_cols=113  Identities=20%  Similarity=0.410  Sum_probs=99.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|++++|. ++.+|++ +...+.+..++..+++++||++|++.|..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            35799999999999999999999999999 6677776 556677888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVG-WYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~-wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++.. |+..++++. .++|++||+.
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~-~~~piilvgn  117 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGT  117 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEE
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhC-CCCcEEEEee
Confidence            9999999999999986 666666654 6789988864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.93  E-value=1.7e-25  Score=173.88  Aligned_cols=114  Identities=13%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      .+.+||+++|++|||||||+++|++++|. ++.+|.+.++ .+.+.+++..+.+++||++|++++..++..+++++|+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            34689999999999999999999999998 7777888665 467888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|||++|++||+++..|++++.+.. ..++|++||+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgn  117 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGN  117 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEE
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEec
Confidence            9999999999999999999998764 46899888764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-25  Score=171.38  Aligned_cols=115  Identities=21%  Similarity=0.437  Sum_probs=108.1

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...|||+++|++|||||||+++|++++|. .+.++.+.++....+..++..+.+.+||++|+++|..+++.+++++++++
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   83 (170)
T d1r2qa_           4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence            45799999999999999999999999999 77889999998888899999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      +|||+++++||+++..|+..+.+...+++|++||+.
T Consensus        84 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgn  119 (170)
T d1r2qa_          84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGN  119 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEeccchhhHHHHHHHHhhhhhhccCCCceEEeecc
Confidence            999999999999999999999888878999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.1e-25  Score=174.32  Aligned_cols=112  Identities=21%  Similarity=0.313  Sum_probs=97.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|++|||||||++||++++|. ++.+|.+ +...+.+.+++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            689999999999999999999999999 6666665 55567788899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++|++||+++..|+........+++|++||+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgn  114 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC  114 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEE
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEe
Confidence            9999999999998765554443346899998864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=172.79  Aligned_cols=112  Identities=13%  Similarity=0.241  Sum_probs=99.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .|||+++|++|||||||++||++++|. .+.+|++..+ .....+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            689999999999999999999999998 6777887554 56678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN--QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~--~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+..  ..++|++||+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgn  116 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN  116 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEee
Confidence            99999999999999999987653  36789998863

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.6e-25  Score=170.88  Aligned_cols=114  Identities=22%  Similarity=0.405  Sum_probs=106.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+|+|++|||||||+++|.+++|. .+.++.+.+.....+..++..+.+++||++|++++..+++.++++++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            589999999999999999999999999 7777888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      ||.++++||+++..|+.++.+....++|++||+.-
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  119 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNK  119 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEec
Confidence            99999999999999999999988889999998753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-25  Score=171.34  Aligned_cols=113  Identities=19%  Similarity=0.415  Sum_probs=102.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||+++|.+++|. .+.++.+.+........++..+.+.+||++|++.+..+++.+++++|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            589999999999999999999999998 6777888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||++|++||+++..|+.++.+....++|++||+.
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~n  116 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN  116 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEec
Confidence            9999999999999999999998888999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=170.84  Aligned_cols=110  Identities=15%  Similarity=0.258  Sum_probs=95.5

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +++.+||+++|+++||||||+++|++++|..+.++.+..+ .+.+.+++..+.++|||++|++++     .|++++|++|
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            3457999999999999999999999999987666666554 678889999999999999998864     4889999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN---QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~---~~~~piIlVa~  212 (215)
                      +|||++|++||+++..|++++....   .+++|++||+.
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~  114 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGT  114 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEE
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEee
Confidence            9999999999999999999987653   46789988874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=168.75  Aligned_cols=111  Identities=11%  Similarity=0.220  Sum_probs=97.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||++||+++.|. ++.+|++.++. ..+..++..+.+++||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            589999999999999999999999998 77888888765 455678999999999999999874 567789999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||++|++||+++..|+..+.... ..+.|++||+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgn  114 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN  114 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeecc
Confidence            99999999999999988776543 46799998874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-24  Score=168.46  Aligned_cols=115  Identities=23%  Similarity=0.482  Sum_probs=104.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...+||+++|++|||||||+++|.+++|. ++.++.+.++..+.+.+++..+++.+|||+|++++..+++.+++++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999998 77778888888889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +|||++++++|+.+..|+.++.+... ...|+++++.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~n  121 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN  121 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEE
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEee
Confidence            99999999999999999999987654 4577766654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=168.46  Aligned_cols=112  Identities=11%  Similarity=0.184  Sum_probs=96.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .|||+++|++|||||||+++|++++|. ++.+|.+ +...+.+.+++..+.+++||++|++++...++.+++++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            589999999999999999999999998 6666665 66678889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||+++++||+++..|+.++.+.. ..+.|+|||+.
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgn  118 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGN  118 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEe
Confidence            99999999999999999887654 46788888764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=165.98  Aligned_cols=114  Identities=11%  Similarity=0.201  Sum_probs=102.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      +..|||+++|+++||||||+++|+++.|. .+.++.+.++. ..+..++..+.+.+||++|++.+...++.+++++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            45799999999999999999999999999 66778776665 45677899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWNQ-VTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~~-~~~piIlVa~  212 (215)
                      +|||+++++||+++..|++.+.+... +++|++||+.
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n  116 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN  116 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEE
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEec
Confidence            99999999999999999999988653 6799988874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1e-23  Score=162.43  Aligned_cols=113  Identities=21%  Similarity=0.479  Sum_probs=102.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-cchhhccCCcEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF  177 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-~~~~~~~~a~~iil  177 (215)
                      .+||+++|++|||||||+++|++++|. .+.++.+..+..+...+.+....+.+||+.|++.+.. .++.|++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            589999999999999999999999999 7777888888888999999999999999999887654 57889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      |||++|++||+++..|+.++.++. ..++|++||+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgn  117 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN  117 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEec
Confidence            999999999999999999998865 46899988874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.1e-24  Score=165.21  Aligned_cols=111  Identities=16%  Similarity=0.278  Sum_probs=94.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecC---CCCCCCccchhhccCCcE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVG---GDSRSFDHVPIACKDAVA  174 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~---G~e~~~~~~~~~~~~a~~  174 (215)
                      .|||+++|++|||||||+++|.++.+.  .+.++++.+++.+.+.+++..+.+.+||+.   |+++|  +...+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            589999999999999999999988765  455688999999999999999999999965   45554  67788999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          175 ILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       175 iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      +|+|||+++++||+++..|+.++.+.. .+++|++||+.
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgn  119 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGN  119 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEec
Confidence            999999999999999999999997753 46899998874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.5e-24  Score=167.80  Aligned_cols=113  Identities=24%  Similarity=0.473  Sum_probs=100.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECC----------eEEEEEEEecCCCCCCCccchhh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----------ARIAFSIWDVGGDSRSFDHVPIA  168 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~----------~~~~l~i~Dt~G~e~~~~~~~~~  168 (215)
                      .+||+++|++|||||||+++|++++|. .+.++.+.++..+.+.+++          ..+++++||++|+++|..+++.+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            689999999999999999999999999 6677888888877776643          35789999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       169 ~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ++++|++|+|||+++++||+.+..|+.++.++. ..+.|++||+.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~n  129 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGN  129 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEee
Confidence            999999999999999999999999999987664 36688888764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.1e-23  Score=162.77  Aligned_cols=113  Identities=24%  Similarity=0.379  Sum_probs=104.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      -+||+++|++|||||||+++|++++|. ++.+|.+.++..+.....+..+.+.+||++|++.+...++.++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            489999999999999999999999999 7788999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~  212 (215)
                      ||++++.+|+++..|++++.+..    ..++|++||+.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~n  119 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN  119 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEE
Confidence            99999999999999999997753    24689888853

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-23  Score=159.80  Aligned_cols=115  Identities=23%  Similarity=0.401  Sum_probs=101.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL  176 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~ii  176 (215)
                      ...|||+++|+++||||||+++|.+++|. ++.+|++..+..+.+..++..+.+++||++|+.++...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            34689999999999999999999999999 77788998888889999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037          177 FMFDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI  212 (215)
Q Consensus       177 lvfdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~  212 (215)
                      ++||++++.||+.+..|++++.+..    ..++|++||+.
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgn  123 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN  123 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEE
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEecc
Confidence            9999999999999999999997653    24689998874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.9e-23  Score=160.56  Aligned_cols=113  Identities=22%  Similarity=0.376  Sum_probs=86.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEE-CCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~-~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      -+||+++|++|||||||+++|++++|. .+.++.+.+........ +...+.+.+||++|++++..++..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            489999999999999999999999998 66777777766665554 4456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKWN----QVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~~----~~~~piIlVa~  212 (215)
                      |||++++.||+.+..|++++.++.    ..++|++||+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~n  120 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN  120 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEec
Confidence            999999999999999999997653    25789888763

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.87  E-value=2e-22  Score=155.27  Aligned_cols=109  Identities=18%  Similarity=0.307  Sum_probs=95.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ++||+++|+++||||||+++|.+++|. ++.+|.|.++.  .+..+  .+.+++||++|++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            689999999999999999999999998 77788887764  34444  57899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa~  212 (215)
                      ||++++++|+++..|+.++.+. ..+++|++||+-
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~n  112 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN  112 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEe
Confidence            9999999999999988887654 346899988864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.85  E-value=1e-21  Score=152.42  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=94.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||+++|.+++|....++.|.++.  .+..+  .+.+.+||++|++.+...+..+++.+|++++|
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   90 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV   90 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE--EeccC--CeeEeEeeccccccchhHHHHHhhccceeEEe
Confidence            478999999999999999999999999877777776643  44444  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||++|+.||+++..|+.++.... ..++|++||+.
T Consensus        91 ~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~n  125 (176)
T d1fzqa_          91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN  125 (176)
T ss_dssp             EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred             eccccccchhhhhhhhhhhhhhhccCCCeEEEEEE
Confidence            99999999999998888876543 46789888753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.84  E-value=3.8e-21  Score=147.74  Aligned_cols=108  Identities=20%  Similarity=0.293  Sum_probs=91.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .+||+++|++|||||||+++|.++.+..+.+|.|....  .+..  ..+.+.+||++|++.+...+..++++++++++||
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeee--eccc--cccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            68999999999999999999999888777788876543  3444  3478999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHH-hHCCCCceEEEEe
Q 028037          180 DLTSRCTLNSIVGWYSEAR-KWNQVTKQSLFFH  211 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~-~~~~~~~piIlVa  211 (215)
                      |++|..+|.++..|+.+.. .....+.|++||+
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~  110 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEERLAGATLLIFA  110 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred             ecccchhHHHHHHhhhhhhhhcccCCCceEEEE
Confidence            9999999999987665554 3444679988885

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.84  E-value=2.6e-21  Score=151.25  Aligned_cols=110  Identities=21%  Similarity=0.266  Sum_probs=89.6

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      ...+||+++|++|||||||+++|.++++....+|.+....  .+..+  .+++.+||++|++.+..++..++++++++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   90 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF   90 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEE--EEeeC--CEEEEEEecccccccchhHHhhhccceeEEE
Confidence            3479999999999999999999999988877778776654  33333  4789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhH-CCCCceEEEEe
Q 028037          178 MFDLTSRCTLNSIVGWYSEARKW-NQVTKQSLFFH  211 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~~-~~~~~piIlVa  211 (215)
                      |||++|+.+|.++..|+.++.+. ...+.|++||+
T Consensus        91 v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~  125 (182)
T d1moza_          91 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA  125 (182)
T ss_dssp             EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEE
T ss_pred             EeeecccccchhHHHHHHHHHHhhccCCcceEEEE
Confidence            99999999999999988776543 34678988875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.83  E-value=5.5e-21  Score=148.33  Aligned_cols=110  Identities=18%  Similarity=0.272  Sum_probs=93.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|+++||||||+++|.++.+....+|.+..+..  ..  ...+.+.+||++|++.+...+..++++++++++|
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~--~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v   86 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   86 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEE--EE--ETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEE--ee--ccceeeEEecCCCcchhhhHHHhhhcccceEEEE
Confidence            4689999999999999999999999988767777766542  22  3347899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHh-HCCCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARK-WNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa~  212 (215)
                      ||+++.++|.++..|+..+.+ ....+.|++||+.
T Consensus        87 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~N  121 (173)
T d1e0sa_          87 VDCADRDRIDEARQELHRIINDREMRDAIILIFAN  121 (173)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             EecccchhHHHHHHHHHHHhhhcccccceeeeeee
Confidence            999999999999988877654 3446788877763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6.1e-21  Score=149.21  Aligned_cols=106  Identities=19%  Similarity=0.205  Sum_probs=86.1

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +++||++||+.|||||||++||..++|+    |.|..    +..++...+++++||++||++|..++..||++++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA----GTGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC----CCSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            3689999999999999999999988764    44433    223344568899999999999999999999999999999


Q ss_pred             EeCCChhhH-----------HHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCTL-----------NSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf-----------~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++.++|           +....|...+......+.|++++..
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~N  117 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLN  117 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEec
Confidence            999999987           3445666666666667889888753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.8e-20  Score=145.12  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=94.0

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      +.+||+++|++|||||||++||..+.|. +.||+|.++..    +....+.+++||++|++.+...+..+|+++++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeEe
Confidence            3689999999999999999999999884 67899987642    334568899999999999999999999999999999


Q ss_pred             EeCCChh-----------hHHHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRC-----------TLNSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~-----------Sf~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||.++..           +++.+..|...+......+.|+++++.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~N  120 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  120 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEE
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecc
Confidence            9998864           567788899998887777899888863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.78  E-value=3e-19  Score=135.01  Aligned_cols=108  Identities=21%  Similarity=0.279  Sum_probs=90.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEe
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD  180 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfd  180 (215)
                      +||+++|++|||||||+++|.+++|....++....    ....+...+.+.+||++|++.+......+++.+++++++||
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            59999999999999999999999987444433322    23345667899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          181 LTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       181 it~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ++|+.+|..+..|+.++.... ....|+++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  109 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFAN  109 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEee
Confidence            999999999998888876543 36688888774

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.6e-18  Score=136.25  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=78.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      .+||+++|++|||||||++||.   |. .+.||+|.++.  .+..  ..+.+++||++|++.+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEE--TTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEee--eeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999993   55 77889997643  3333  457899999999999999999999999999999


Q ss_pred             EeCCChhh----------HHHHHHHHHHHHh-HCCCCceEEEEee
Q 028037          179 FDLTSRCT----------LNSIVGWYSEARK-WNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~S----------f~~i~~wl~~i~~-~~~~~~piIlVa~  212 (215)
                      ||.++..+          ++....|+..+.. ....++|++|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~N  119 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLN  119 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEE
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEec
Confidence            99998654          4455555555433 3346899988864

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=4.7e-17  Score=131.24  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||++||..+++   .||+|.+.  ..+.+++  +.+++||++||+.++..+..++.++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~~--~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCEE--EEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeEE--EEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            368999999999999999999987755   47888664  3455554  7899999999999999999999999999999


Q ss_pred             EeCCChhh----------H-HHHHHHHHHHHhHCCCCceEEEEee
Q 028037          179 FDLTSRCT----------L-NSIVGWYSEARKWNQVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~S----------f-~~i~~wl~~i~~~~~~~~piIlVa~  212 (215)
                      ||+++.+.          + +....|...+....-.++|++|++.
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~N  122 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLN  122 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEE
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEec
Confidence            99997532          2 3333444444444446799888763

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.9e-16  Score=119.12  Aligned_cols=107  Identities=13%  Similarity=0.069  Sum_probs=90.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL  181 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdi  181 (215)
                      ||+++|++|||||||++++.++++....++.+....    ......+...+||+.|...+......++..+++++++||.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            899999999999999999999998877777775543    3334456789999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          182 TSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       182 t~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ++..++.....|+..+.... ..+.|+++++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~  109 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGN  109 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEE
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEec
Confidence            99999999998887776654 35678777653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.4e-16  Score=126.26  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC-ccchhhccCCcEEEEEEe
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFD  180 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~-~~~~~~~~~a~~iilvfd  180 (215)
                      +|+++|+++||||||+++|.++++....++.+.++....+. ++..+.+.+||++|++++. ..+..++..++++++|||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999999986677777665533322 4567889999999999875 566788899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHH-hH--CCCCceEEEE-ee
Q 028037          181 LTSRCTL-NSIVGWYSEAR-KW--NQVTKQSLFF-HI  212 (215)
Q Consensus       181 it~~~Sf-~~i~~wl~~i~-~~--~~~~~piIlV-a~  212 (215)
                      .+|..++ .....|+.++. ..  ...++|++|| +|
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK  117 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK  117 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEEC
Confidence            9998774 45555555542 22  2356898776 45

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.65  E-value=2.8e-16  Score=120.84  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=85.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEE
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM  178 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilv  178 (215)
                      ..+||+++|++|||||||++|+.++++....++.+...  ......  .+++.+||++|++.+......++..+++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v   89 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV   89 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeE--EEEeec--ceEEEEeccccccccccchhhhhccceeeeee
Confidence            46899999999999999999999999886556655443  233333  47899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEee
Q 028037          179 FDLTSRCTLNSIVGWYSEARKWN-QVTKQSLFFHI  212 (215)
Q Consensus       179 fdit~~~Sf~~i~~wl~~i~~~~-~~~~piIlVa~  212 (215)
                      ||.+|.++|+....++....... ..+.|++||+.
T Consensus        90 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n  124 (177)
T d1zj6a1          90 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN  124 (177)
T ss_dssp             EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             cccccccchhhhhhhhhhhhhcccccceEEEEEEE
Confidence            99999999999887666654433 36788887764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.62  E-value=1.8e-15  Score=114.44  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=88.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      .+||+++|++|||||||+++|.+++|....++.+..+.  ....  ..+.+.+||.+|.+.+......++...+++++++
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV   80 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eecc--CceEEEEeeccccccccccchhhhhhhhhhhhhh
Confidence            58999999999999999999999999876677665443  2233  3478899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHH-hHCCCCceEEEEee
Q 028037          180 DLTSRCTLNSIVGWYSEAR-KWNQVTKQSLFFHI  212 (215)
Q Consensus       180 dit~~~Sf~~i~~wl~~i~-~~~~~~~piIlVa~  212 (215)
                      |+++..++.....|+.... .......|+++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~n  114 (169)
T d1upta_          81 DSCDRDRIGISKSELVAMLEEEELRKAILVVFAN  114 (169)
T ss_dssp             ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred             hhhhcchhhhccchhhhhhhhhccccceEEEEEe
Confidence            9999999999987655544 33446678777654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=1.3e-14  Score=111.14  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF  177 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iil  177 (215)
                      .+..||+++|++|||||||+++|.++.+....++.+.+..  .+..++  ..+..||+.++..+...+..++...+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee--EEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            3468999999999999999999999998866677666544  445554  467899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHh-HCCCCceEEEEee
Q 028037          178 MFDLTSRCTLNSIVGWYSEARK-WNQVTKQSLFFHI  212 (215)
Q Consensus       178 vfdit~~~Sf~~i~~wl~~i~~-~~~~~~piIlVa~  212 (215)
                      ++|+++..++.+...++..... ....+.|++|++.
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  122 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGN  122 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEE
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEe
Confidence            9999999999998865555544 3346788777753

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=1.6e-14  Score=111.76  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccch--------hhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IAC  169 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~--------~~~  169 (215)
                      .-+|+++|.+|||||||++++++.+..  ...+.+..+.........+  ..+.+|||+|.........        .++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            447999999999999999999987643  2222222223223333443  5789999999877544333        335


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .++|++|+|+|.++..+... ..|++.+++.. .+.|+++|+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~  122 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVG  122 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEE
T ss_pred             ccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhh
Confidence            78999999999988755433 45566665544 567877664

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.4e-14  Score=109.68  Aligned_cols=108  Identities=18%  Similarity=0.267  Sum_probs=79.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc--------chhhcc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK  170 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~--------~~~~~~  170 (215)
                      +||+++|+++||||||++++++.+..  .+.+....+.....+...+  ..+.+||++|..+....        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999977654  3333333333334444444  56889999997765432        234578


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ++|++++++|..+..+++....|.+.++... .+.|++||.
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~  119 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVR  119 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEE
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcc-cccceeecc
Confidence            9999999999999999888888877776654 567877664

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=2.7e-13  Score=106.44  Aligned_cols=106  Identities=14%  Similarity=0.067  Sum_probs=75.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc----CCcEEE
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK----DAVAIL  176 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~----~a~~ii  176 (215)
                      -.|+++|+++||||||+++|+++++...   +..+.....+  +.....+.+||++|++.+...+..++.    ..+.++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~--~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA--DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET--TGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEE--EeCCeEEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            4899999999999999999999887632   2222222333  334456789999999988776665543    447777


Q ss_pred             EEEeCC-ChhhHHHHHHHHHHH----HhHCCCCceEEEEe
Q 028037          177 FMFDLT-SRCTLNSIVGWYSEA----RKWNQVTKQSLFFH  211 (215)
Q Consensus       177 lvfdit-~~~Sf~~i~~wl~~i----~~~~~~~~piIlVa  211 (215)
                      +++|.. +..+++.+..|+.++    ......++|+++|+
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~  118 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC  118 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence            777755 577788877776544    44455788988775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=3.4e-13  Score=101.76  Aligned_cols=90  Identities=18%  Similarity=0.356  Sum_probs=60.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC---------ccchhhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC  169 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~---------~~~~~~~  169 (215)
                      +||+++|.++||||||++++++.+..  ...+..........+..++  ..+.+|||+|.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            59999999999999999999976643  2222222222333444444  568899999943211         1112235


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHH
Q 028037          170 KDAVAILFMFDLTSRCTLNSIVG  192 (215)
Q Consensus       170 ~~a~~iilvfdit~~~Sf~~i~~  192 (215)
                      ..+|++++|+|.++..+.+...-
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~  101 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKI  101 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhh
Confidence            78999999999999887665443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=1.2e-11  Score=95.26  Aligned_cols=108  Identities=14%  Similarity=0.190  Sum_probs=64.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC----Ccc---chhhccCCc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDH---VPIACKDAV  173 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~----~~~---~~~~~~~a~  173 (215)
                      .|.++|.++||||||++++++.... ........+.... .........+++|||+|....    ..+   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            5899999999999999999877654 3322222222111 222334456889999995431    111   223467899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEe
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWN--QVTKQSLFFH  211 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~--~~~~piIlVa  211 (215)
                      ++++++|.... .+..+..|...+....  ..+.|+|+|.
T Consensus        82 ~~~~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~  120 (180)
T d1udxa2          82 VLLYVLDAADE-PLKTLETLRKEVGAYDPALLRRPSLVAL  120 (180)
T ss_dssp             EEEEEEETTSC-HHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred             hhhhhcccccc-cccchhhhhhhhhccccccchhhhhhhh
Confidence            99999998654 2344444444433322  1346766654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.21  E-value=9.8e-12  Score=94.90  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=62.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------cchhhccCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACKDA  172 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------~~~~~~~~a  172 (215)
                      .|+++|.+|||||||+++|++..........+.+.......++.....+.+||++|......         ....++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            68999999999999999999766542111111111111222333446789999999543221         222335789


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       173 ~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      |+++++.|.++..+.+. ..|++.+++..   +|+|+|+
T Consensus        82 d~i~~~~~~~~~~~~~~-~~~~~~l~~~~---~pviiv~  116 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ESLADFLRKST---VDTILVA  116 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HHHHHHHHHHT---CCEEEEE
T ss_pred             cEEEEeecccccccccc-ccccccccccc---ccccccc
Confidence            99999999877655433 56666676544   5666554

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=4.4e-10  Score=86.31  Aligned_cols=106  Identities=14%  Similarity=0.246  Sum_probs=64.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCC------------ccc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------------DHV  165 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~------------~~~  165 (215)
                      .+||+++|.++||||||++++++....  ...+..........+..++.  .+.++|++|.....            ...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHHH
Confidence            589999999999999999999986542  22222212222234455553  47788888865422            222


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+.+.+|++++|+|.+.... .....|+..++..   +.|+|+|.
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~~---~~~~i~v~  127 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGIT-RQDQRMAGLMERR---GRASVVVF  127 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHHT---TCEEEEEE
T ss_pred             HHHHhcCCEEEEeecccccch-hhHHHHHHHHHHc---CCceeeec
Confidence            334578999999999986543 2334455555443   46766653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=1.4e-10  Score=88.77  Aligned_cols=80  Identities=13%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc---------------cc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------------HV  165 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~---------------~~  165 (215)
                      .|+++|.+|||||||++++.+.+.. ...+.+..+.  ..+...+    +.+|||+|......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999987765 4333111121  1223332    57899999532211               12


Q ss_pred             hhhccCCcEEEEEEeCCChhhH
Q 028037          166 PIACKDAVAILFMFDLTSRCTL  187 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf  187 (215)
                      ...++.+|++++|+|.++....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~   97 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEI   97 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHH
T ss_pred             hhcccccchheeeeeccccchh
Confidence            2345689999999998866443

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.03  E-value=1.1e-10  Score=90.12  Aligned_cols=93  Identities=14%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcCCCC-Cc--cc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhcc
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--LQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK  170 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~~f~-~~--~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~  170 (215)
                      +++.++|.++|.+++|||||++++++..-. ..  .+   ..|..+......+......+.++|++|+..|.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            457889999999999999999999864322 11  11   1122111111111123367889999999988888888889


Q ss_pred             CCcEEEEEEeCCChhhHHH
Q 028037          171 DAVAILFMFDLTSRCTLNS  189 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~  189 (215)
                      .+|++++++|.++....+.
T Consensus        82 ~~d~~ilv~d~~~g~~~~~  100 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQT  100 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHH
T ss_pred             hccccccccccccccchhh
Confidence            9999999999998654443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.94  E-value=1.2e-09  Score=87.29  Aligned_cols=106  Identities=12%  Similarity=0.097  Sum_probs=66.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEE--------------EEEECCeEEEEEEEecCCCCCCCccc
Q 028037          103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINK--------------TLMVQGARIAFSIWDVGGDSRSFDHV  165 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~--------------~v~~~~~~~~l~i~Dt~G~e~~~~~~  165 (215)
                      |.++|-.++|||||++++++.... ....  +........              ...++.....+.++||+|++.|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            999999999999999999864221 1100  000000000              11123334578999999999998888


Q ss_pred             hhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEee
Q 028037          166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHI  212 (215)
Q Consensus       166 ~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~  212 (215)
                      ...+..+|++|+|+|..+.-.-+. ...+..+...   ++|+| +++|
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK  131 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANK  131 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEEC
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEEC
Confidence            888899999999999987533332 2333444443   35544 4444

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.88  E-value=1.5e-09  Score=85.73  Aligned_cols=110  Identities=12%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--------CCC-----Cccc---cceeeeEEEEEEECCeEEEEEEEecCCCCCCCc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--------EQE-----RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD  163 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--------~f~-----~~~~---t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~  163 (215)
                      .++|+++|-.++|||||+.+++..        ++.     +..+   ..|.......+.+.....+++|.||+|+..|..
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~   82 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIK   82 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHH
Confidence            589999999999999999999621        111     1111   013333333334434446788999999999987


Q ss_pred             cchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeec
Q 028037          164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-S-LFFHII  213 (215)
Q Consensus       164 ~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-i-IlVa~~  213 (215)
                      ....-...+|++|||.|.++--..+..+.|. .+...   ++| + ++++|+
T Consensus        83 ~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~~---gi~~iiv~iNK~  130 (204)
T d2c78a3          83 NMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQV---GVPYIVVFMNKV  130 (204)
T ss_dssp             HHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHHT---TCCCEEEEEECG
T ss_pred             HHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHHc---CCCeEEEEEEec
Confidence            7777788999999999999876665544443 33332   354 4 447775

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=1.5e-09  Score=83.31  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-c-cceeeeEEEEEEECCeEEEEEEEecCCCC----CCCccchhh---ccC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIA---CKD  171 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~-~~~-~-t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e----~~~~~~~~~---~~~  171 (215)
                      +|.++|.++||||||++++.+.... ... . |......  ...+.+ ...+.+|||+|..    +...+...+   +..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~--~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeec--eeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            6899999999999999999876644 222 2 2222222  223322 2357899999952    222232222   456


Q ss_pred             CcEEEEEEeCCChhh
Q 028037          172 AVAILFMFDLTSRCT  186 (215)
Q Consensus       172 a~~iilvfdit~~~S  186 (215)
                      ++.++.+.+....+.
T Consensus        80 ~~~i~~~v~~~~~~~   94 (185)
T d1lnza2          80 TRVIVHVIDMSGLEG   94 (185)
T ss_dssp             CCEEEEEEESSCSSC
T ss_pred             hhhhhheeeeccccc
Confidence            788888887665544

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.78  E-value=1e-08  Score=83.46  Aligned_cols=85  Identities=21%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccc-------hh-
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI-  167 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~-------~~-  167 (215)
                      ...++|+++|.+|||||||+|.+++....  ...+....+........+|  ..+.++||+|-.......       .. 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            34789999999999999999999986533  2222111122233445555  468899999964322111       11 


Q ss_pred             -hccCCcEEEEEEeCCCh
Q 028037          168 -ACKDAVAILFMFDLTSR  184 (215)
Q Consensus       168 -~~~~a~~iilvfdit~~  184 (215)
                       .....+++++|.++++.
T Consensus       108 ~~~~~~~~il~v~~~~~~  125 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAY  125 (257)
T ss_dssp             TTTCEECEEEEEEESSCC
T ss_pred             HhcCCCCeEEEEEECCCC
Confidence             12456889999888753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.7e-08  Score=87.31  Aligned_cols=105  Identities=13%  Similarity=0.157  Sum_probs=60.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccccceee--eEE-EEEEECCeEEEEEEEecCCCCCCCccchh-----hcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLN--LIN-KTLMVQGARIAFSIWDVGGDSRSFDHVPI-----ACK  170 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~--~~~-~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~-----~~~  170 (215)
                      .++|+++|.+|||||||+|.+.+.... +.....|..  ... ..+.. ...-.+.+|||+|-.........     .+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            589999999999999999999975433 221122211  110 11111 12224679999997654332222     245


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      .+|.+|++.|..-.+.  + ..++.++++.   +.|+++|.
T Consensus       135 ~~d~~l~~~~~~~~~~--d-~~l~~~l~~~---~k~~~~V~  169 (400)
T d1tq4a_         135 EYDFFIIISATRFKKN--D-IDIAKAISMM---KKEFYFVR  169 (400)
T ss_dssp             GCSEEEEEESSCCCHH--H-HHHHHHHHHT---TCEEEEEE
T ss_pred             cceEEEEecCCCCCHH--H-HHHHHHHHHc---CCCEEEEE
Confidence            7788888876433222  2 2444555543   46776664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=2.2e-08  Score=77.34  Aligned_cols=104  Identities=16%  Similarity=0.199  Sum_probs=54.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCc-------------cch
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------------HVP  166 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~-------------~~~  166 (215)
                      .+|+++|.+|||||||++++.+.+.. ......+............   .+.+.|+.|-.....             ...
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhhh
Confidence            37999999999999999999976542 2222221111111222222   233455554322111             111


Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEe
Q 028037          167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFH  211 (215)
Q Consensus       167 ~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa  211 (215)
                      ..+..+++++++.|.++...- .-..+++.++..   ++|+++|.
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~---~~piivv~  141 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY---GIPVIVIA  141 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT---TCCEEEEE
T ss_pred             ccccchhhhhhhhhccccccc-cccccccccccc---cCcceech
Confidence            234567999999998765331 223555555543   46776664

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.71  E-value=1.5e-08  Score=79.36  Aligned_cols=111  Identities=9%  Similarity=0.105  Sum_probs=74.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC-------CCC--------CccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN-------EQE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~-------~f~--------~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      .++|+++|-.++|||||++++.+.       .+.        ......|.......+.++.....+++.|++|+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            589999999999999999999741       110        01112244444455556556678999999999998776


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEE-EEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSL-FFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piI-lVa~~  213 (215)
                      ...-...+|++++|.|..+--.=+ -++.+..+....  ..|+| +++|+
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~~~--~~~iIv~iNK~  129 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQIG--VEHVVVYVNKA  129 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCCEEEEEECG
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHHhc--CCcEEEEEecc
Confidence            666778999999999999753322 233344444433  23444 46775

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.67  E-value=5.3e-08  Score=75.51  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=70.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC--Cccc----cceeeeEEEEEE-------------------ECCeEEEEEE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ----MAGLNLINKTLM-------------------VQGARIAFSI  152 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~--~~~~----t~g~~~~~~~v~-------------------~~~~~~~l~i  152 (215)
                      ...++|.++|-.++|||||++++.+....  ....    |....+......                   .......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            45789999999999999999999864322  1100    111111111111                   1122467899


Q ss_pred             EecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       153 ~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .|++|++.|......-...+|+++++.|..+...-+...+.+..++... ....+++++|+
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~~~iiv~inK~  142 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKI  142 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECG
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-Cccceeeeecc
Confidence            9999999987777666788999999999888532233344444444433 22334455553

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=5.3e-08  Score=82.44  Aligned_cols=110  Identities=12%  Similarity=0.170  Sum_probs=73.9

Q ss_pred             ee-eEEEEcCCCCCHHHHHHHHhc--CC----------CCCccc---cceeeeEEE--EEE--------------ECCeE
Q 028037          100 SL-KISLLGDCQIGKTSFVVKYVG--NE----------QERSLQ---MAGLNLINK--TLM--------------VQGAR  147 (215)
Q Consensus       100 ~~-KIvllGd~~vGKTSLi~r~~~--~~----------f~~~~~---t~g~~~~~~--~v~--------------~~~~~  147 (215)
                      ++ +|+++|-.+.|||||+.+++.  +.          +.++.+   ..|......  .+.              .++..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            45 599999999999999999962  11          000000   011111111  111              13467


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      +.+++.||+|+..|.......++-+|++++|.|..+.-..+...-|......    ++| +++++|+
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~----~~p~i~viNKi  158 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE----RIKPVVVINKV  158 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT----TCEEEEEEECH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc----CCCeEEEEECc
Confidence            8899999999999999888888999999999999998777776666655433    345 5555553

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.59  E-value=6.3e-08  Score=79.34  Aligned_cols=106  Identities=15%  Similarity=0.192  Sum_probs=71.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC--CCC------------Cccc---cceeeeEE--EEEEECCeEEEEEEEecCCCCCCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN--EQE------------RSLQ---MAGLNLIN--KTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~~---t~g~~~~~--~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      +|.++|-.++|||||+.+++..  ...            ++.+   ..+.....  ..+..++  .+++++||+|+..|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            6899999999999999999621  110            0000   01222222  2334444  578999999999998


Q ss_pred             ccchhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       163 ~~~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ......++-+|++|+|.|..+.-.-+....|. .+++.   ++| +++|+|+
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~~---~~p~~i~iNk~  129 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAERL---GLPRMVVVTKL  129 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECG
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhhc---ccccccccccc
Confidence            88888889999999999999876666656664 33332   345 5555554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.58  E-value=7.2e-08  Score=79.32  Aligned_cols=108  Identities=15%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC--CCC------------Ccc---ccceeeeEEEEEEECCeEEEEEEEecCCCCCCCcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN--EQE------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH  164 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~--~f~------------~~~---~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~  164 (215)
                      +|.++|-.++|||||+.+++..  ...            ++.   ...|..+......+.-+..+++|.||+|+..|...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            6999999999999999999631  110            000   01122222222333333467999999999999998


Q ss_pred             chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeec
Q 028037          165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQ-SLFFHII  213 (215)
Q Consensus       165 ~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~p-iIlVa~~  213 (215)
                      ....++-+|+.|+|.|..+--.-+..+-|- +.++   .++| +++|+||
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T~~~w~-~a~~---~~lP~i~fINKm  133 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK---YKVPRIAFANKM  133 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHHHHHHH-HHHT---TTCCEEEEEECT
T ss_pred             HHHHHHhhhheEEeccccCCcchhHHHHHH-HHHH---cCCCEEEEEecc
Confidence            888899999999999999876666666663 3333   3577 5556664

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.4e-07  Score=71.25  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=53.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeeeEEEEEEECCeEEEEEEEecCCCCCC---------Cccchhhcc
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIACK  170 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~--~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~---------~~~~~~~~~  170 (215)
                      .|+++|.++||||||++++++.+..  .+..++...........+.  ..+..||+.|....         ......+..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            5899999999999999999987654  2222222222222223333  34556888875431         112222345


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 028037          171 DAVAILFMFDLTSRCTLNSIVGWYSEARK  199 (215)
Q Consensus       171 ~a~~iilvfdit~~~Sf~~i~~wl~~i~~  199 (215)
                      .+++++++.|.++.  ......+...+.+
T Consensus        85 ~~~~~l~~~d~~~~--~~~~~~~~~~l~~  111 (179)
T d1egaa1          85 DVELVIFVVEGTRW--TPDDEMVLNKLRE  111 (179)
T ss_dssp             CEEEEEEEEETTCC--CHHHHHHHHHHHS
T ss_pred             hcceeEEEEecCcc--chhHHHHHHHhhh
Confidence            67777788886653  2333344444443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.50  E-value=4.8e-07  Score=71.89  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=59.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhcC--CCCC------------------------------ccccceeeeEEEEEEEC
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVGN--EQER------------------------------SLQMAGLNLINKTLMVQ  144 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~~--~f~~------------------------------~~~t~g~~~~~~~v~~~  144 (215)
                      ....++|+++|--.+|||||+.+++..  ....                              .....|...........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            345789999999999999999999631  1100                              00011122212222232


Q ss_pred             CeEEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCChh
Q 028037          145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC  185 (215)
Q Consensus       145 ~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~~  185 (215)
                      .....+.+.|++|++.|-.....-...+|++++|.|..+.-
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~  126 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV  126 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCc
Confidence            33457899999999999877766778999999999998753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.42  E-value=1.9e-07  Score=72.89  Aligned_cols=87  Identities=14%  Similarity=0.100  Sum_probs=55.9

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCC---C---ccccceeeeEEEEEEE------------------------CCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---R---SLQMAGLNLINKTLMV------------------------QGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~---~---~~~t~g~~~~~~~v~~------------------------~~~~  147 (215)
                      .+.++|.++|--+.|||||++++++..-.   .   ...+.........+..                        ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            34689999999999999999999852111   0   0000000000001000                        1123


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ..+++.|++|+..|....-.....+|++|+|.|..+.
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g  122 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP  122 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC
T ss_pred             EEEEEeccchHHHHHhhhhcceecccccccccccccc
Confidence            4689999999999876666667889999999998875

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.39  E-value=1.2e-07  Score=75.39  Aligned_cols=85  Identities=14%  Similarity=0.228  Sum_probs=58.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC--CCC-------------------------C---ccccceeeeEEEEEEECCeEEE
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-------------------------R---SLQMAGLNLINKTLMVQGARIA  149 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~--~f~-------------------------~---~~~t~g~~~~~~~v~~~~~~~~  149 (215)
                      .++|+++|--+.|||||+.+++..  ...                         +   .....|.........++.....
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            679999999999999999988531  000                         0   0001122222233333444578


Q ss_pred             EEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       150 l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ++|.||+|++.|......-.+-+|++|+|.|..+-
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G  117 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  117 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccC
Confidence            99999999999988888888899999999999974

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=8.3e-07  Score=66.69  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=23.4

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhcCCCC
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVGNEQE  126 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~~~f~  126 (215)
                      ...||+++|.++||||||++++.+....
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            4789999999999999999999987665

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=5.6e-07  Score=72.27  Aligned_cols=88  Identities=8%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             CceeeeEEEEcCCCCCHHHHHHHHhc--C--------------------CCC-----Cc---cccceeeeEEEEEEECCe
Q 028037           97 DLVSLKISLLGDCQIGKTSFVVKYVG--N--------------------EQE-----RS---LQMAGLNLINKTLMVQGA  146 (215)
Q Consensus        97 ~~~~~KIvllGd~~vGKTSLi~r~~~--~--------------------~f~-----~~---~~t~g~~~~~~~v~~~~~  146 (215)
                      ....++|+++|--+.|||||+.+++.  +                    .+.     ++   ....|.+.......+.-.
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            34568999999999999999999962  1                    110     00   011133322222233333


Q ss_pred             EEEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       147 ~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ..+++|.|++|+..|......-...+|++|+|.|.++-
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            47899999999999987777778899999999998764

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.21  E-value=2.1e-06  Score=71.09  Aligned_cols=83  Identities=19%  Similarity=0.137  Sum_probs=44.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEE----E----------------ECCeEEEEEEEecCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTL----M----------------VQGARIAFSIWDVGG  157 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v----~----------------~~~~~~~l~i~Dt~G  157 (215)
                      +||.++|-++||||||++.+.+.+.. ..+|  |+..+......    .                .......++++|++|
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            48999999999999999999987665 4444  22222111110    0                012346799999998


Q ss_pred             CCC----CCccch---hhccCCcEEEEEEeCCC
Q 028037          158 DSR----SFDHVP---IACKDAVAILFMFDLTS  183 (215)
Q Consensus       158 ~e~----~~~~~~---~~~~~a~~iilvfdit~  183 (215)
                      --+    -..+..   ...+.+|+++.|.|..+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            422    112222   23468999999999864

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.07  E-value=7.1e-06  Score=65.83  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc--CCCC-------------------------C---ccccceeeeEEEEEEECCeE
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVG--NEQE-------------------------R---SLQMAGLNLINKTLMVQGAR  147 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~--~~f~-------------------------~---~~~t~g~~~~~~~v~~~~~~  147 (215)
                      ...++|+++|--+.|||||+.+++.  +...                         +   .....|..............
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            3467899999999999999999952  1110                         0   00000111111111122233


Q ss_pred             EEEEEEecCCCCCCCccchhhccCCcEEEEEEeCCCh
Q 028037          148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR  184 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvfdit~~  184 (215)
                      ..+.+.|++|+..|......-...+|++++|.|..+.
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence            5789999999999988777778899999999999873

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.98  E-value=2.4e-05  Score=64.09  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC--CCccc--cceeeeEEEEEEECC---------------eEEEEEEEecCCCC-
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQ--MAGLNLINKTLMVQG---------------ARIAFSIWDVGGDS-  159 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f--~~~~~--t~g~~~~~~~v~~~~---------------~~~~l~i~Dt~G~e-  159 (215)
                      ++||-++|-++||||||.+.+.+...  ...+|  |+..+..  .+.+..               ....+++.|++|-- 
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g--~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA--KVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE--EEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeE--EEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            57999999999999999999997653  24444  2232332  344332               12578999999732 


Q ss_pred             ---CCCccchhh---ccCCcEEEEEEeCCC
Q 028037          160 ---RSFDHVPIA---CKDAVAILFMFDLTS  183 (215)
Q Consensus       160 ---~~~~~~~~~---~~~a~~iilvfdit~  183 (215)
                         +-..+-..+   .+.+|+++.|.|..+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence               333333333   579999999998866

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.94  E-value=1.6e-05  Score=64.57  Aligned_cols=81  Identities=12%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-Cccc--cceeeeEEEEEEECCe---------------EEEEEEEecCCCCC-
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR-  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~~~~--t~g~~~~~~~v~~~~~---------------~~~l~i~Dt~G~e~-  160 (215)
                      .+||-+||-++||||||++.+...+.. ..+|  |+..+..  .+.+...               ...+++.|++|--+ 
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~g--vv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceE--EEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            479999999999999999999987665 4444  2233333  3333222               13689999999532 


Q ss_pred             ---CCccch---hhccCCcEEEEEEeCC
Q 028037          161 ---SFDHVP---IACKDAVAILFMFDLT  182 (215)
Q Consensus       161 ---~~~~~~---~~~~~a~~iilvfdit  182 (215)
                         -..+..   ...+.+|+++.|.|..
T Consensus        80 a~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cccCCCccHHHHHHHHhccceEEEeecc
Confidence               122333   3357899999999764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.00014  Score=58.86  Aligned_cols=26  Identities=27%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .-+|+|+|+.++|||||++.+++.++
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            44799999999999999999999886

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=1.3e-05  Score=65.02  Aligned_cols=59  Identities=12%  Similarity=0.229  Sum_probs=36.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcCCCCCccccceeeeEEEEEEECCeEEEEEEEecCCCC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS  159 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~~f~~~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e  159 (215)
                      ...++|+++|-++||||||+|++.+.+.....+.-|..-....+..+.   .+.+.||+|--
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCcc
Confidence            347899999999999999999999876553333333322222233332   37899999953

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=3.7e-05  Score=60.80  Aligned_cols=59  Identities=15%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc---c--cee--eeEEEEEEECCeEEEEEEEecCCCCCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ---M--AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF  162 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f~~~~~---t--~g~--~~~~~~v~~~~~~~~l~i~Dt~G~e~~~  162 (215)
                      -..+++|.+|||||||+|.+..+.-..+..   .  .|-  ......+.+++.   -.|.||+|-..+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            367999999999999999998653321111   1  111  111223445432   2578999976543

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.51  E-value=0.00012  Score=59.66  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      -+|+|+|+.++|||||++.+++.++
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            4799999999999999999998876

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.08  E-value=0.00014  Score=53.84  Aligned_cols=22  Identities=41%  Similarity=0.616  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999999885

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.07  E-value=0.00011  Score=58.28  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -..+++|.+|||||||+|.+..+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            467899999999999999998753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.92  E-value=0.00018  Score=52.85  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.2

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-+|+|.|.+|+|||||++++..
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999863

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.68  E-value=0.00045  Score=50.33  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..||++.|.+|+||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988854

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.59  E-value=0.00066  Score=49.59  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...+|++.|.+||||||+.+.+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            467999999999999999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00068  Score=49.25  Aligned_cols=20  Identities=20%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +.|+|.+|+|||||++++..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999973

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.40  E-value=0.00091  Score=47.89  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |++.|.+|+|||||++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999998643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.00094  Score=47.67  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +|+++|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998853

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.27  E-value=0.0014  Score=49.58  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=21.7

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +.++|+++|++|+||||+...+..
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999998875

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0013  Score=47.95  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|++|+|||+|+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999999873

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0012  Score=49.67  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+|+|++|||||||+++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999998753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.19  E-value=0.0013  Score=47.46  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|++.|.+|+||||+++++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.18  E-value=0.0014  Score=49.04  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .++|+++|++|+||||+...+..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999999998863

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.15  E-value=0.0014  Score=48.37  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+|+++|++|+||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999987753

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.003  Score=50.93  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=42.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCCC-C-----ccccceeeeEEEEEEECCeEEEEEEEecCCCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQE-R-----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR  160 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f~-~-----~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~  160 (215)
                      -.=|.++|+.++|||+|++++++..+. .     ...|.|+-.+...+. ++....+-+.||.|-..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~-~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHP-KKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECS-SSTTCEEEEEEECCBCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeecc-CCCCceEEEEecccccc
Confidence            346788999999999999999987643 2     123667655433332 45566788999998643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.11  E-value=0.0016  Score=47.77  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=18.2

Q ss_pred             eEE-EEcCCCCCHHHHHHHHhc
Q 028037          102 KIS-LLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIv-llGd~~vGKTSLi~r~~~  122 (215)
                      ||+ ++|.+|+|||||+.+++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            554 999999999999998863

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.10  E-value=0.0016  Score=48.35  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .||+++|++|+||||+...+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0016  Score=48.47  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +.+|+|+|++|+||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.03  E-value=0.0017  Score=48.23  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .||+++|++|+||||+...+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.02  E-value=0.0015  Score=48.93  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..+|+++|++|+||||+...+..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999988753

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0018  Score=48.58  Aligned_cols=20  Identities=20%  Similarity=0.418  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |+++|++|+||+||+++++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999985

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.98  E-value=0.0018  Score=48.30  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999998754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0033  Score=49.63  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999988854

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.92  E-value=0.0022  Score=49.17  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      +++++|++|||||+++..+..
T Consensus        45 n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEecCCcccHHHHHHHHH
Confidence            689999999999999987764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.002  Score=48.65  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |+|+|++|||||||++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.002  Score=47.67  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .||+++|++|+||||....+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998775

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.85  E-value=0.0021  Score=47.05  Aligned_cols=20  Identities=25%  Similarity=0.255  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      +|+++|.+||||||+.+.+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999887764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.004  Score=46.27  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..=|+++|.+|+||||++.++..
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999964

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.83  E-value=0.0023  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=17.4

Q ss_pred             eEEEE-cCCCCCHHHHHHHHhc
Q 028037          102 KISLL-GDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvll-Gd~~vGKTSLi~r~~~  122 (215)
                      ||+++ |.+|+||||+.+.+..
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            45555 9999999999998875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0025  Score=48.97  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+++|++|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            688999999999999999854

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0027  Score=51.04  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++++|++|||||+++..+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3789999999999999988764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.73  E-value=0.0033  Score=46.96  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..-|+++|++|+||||+..++..
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.72  E-value=0.0028  Score=47.50  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .=|+++|-+|+||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3489999999999999998873

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0048  Score=48.94  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            7899999999999999988754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.64  E-value=0.003  Score=48.47  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |+++|..|+|||||++++..
T Consensus         3 i~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHH
Confidence            78999999999999999973

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.58  E-value=0.0063  Score=47.69  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            5789999999999999977654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.57  E-value=0.007  Score=48.00  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            7999999999999999988753

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0034  Score=45.44  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      =+++.|.+|+||||+.+.+..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.53  E-value=0.0034  Score=45.95  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=16.8

Q ss_pred             eEE-EEcCCCCCHHHHHHHHh
Q 028037          102 KIS-LLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIv-llGd~~vGKTSLi~r~~  121 (215)
                      ||+ +.|.+||||||+++.+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            565 56999999999998774

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0041  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|+++|++|+||||...++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.50  E-value=0.0036  Score=45.57  Aligned_cols=19  Identities=16%  Similarity=0.142  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      |+|.|.+|+||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999998774

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.44  E-value=0.0081  Score=47.31  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999988865

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.41  E-value=0.011  Score=46.47  Aligned_cols=22  Identities=32%  Similarity=0.339  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988765

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.40  E-value=0.0034  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.188  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -|++.|++|+|||+|+..+.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.0092  Score=46.99  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.34  E-value=0.004  Score=48.18  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++|.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            477889999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.33  E-value=0.0045  Score=45.21  Aligned_cols=20  Identities=20%  Similarity=0.328  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      +|+++|.+|+||||+...+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988774

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.26  E-value=0.0051  Score=44.52  Aligned_cols=20  Identities=20%  Similarity=0.265  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |++.|.+|+||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.24  E-value=0.0047  Score=47.68  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+||||+++.+..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998874

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.0055  Score=45.82  Aligned_cols=21  Identities=33%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|+++|++|+||||+...+..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998875

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.10  E-value=0.0081  Score=43.28  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      -+-|.++|.+|+||||+...+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999887665

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.0058  Score=47.04  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||++++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999998874

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.94  E-value=0.0067  Score=46.32  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|+.|+|||||++-+++-
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            5779999999999999999864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.88  E-value=0.0074  Score=44.19  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=17.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      .|+++|.+|+||||+.+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            47899999999999998885

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.88  E-value=0.0075  Score=47.55  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -++++|++|+|||||++.+.+-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            3678999999999999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.0075  Score=49.64  Aligned_cols=22  Identities=23%  Similarity=0.526  Sum_probs=20.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+.|-+.|.+|+|||||++++.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHH
Confidence            6899999999999999999996

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=94.82  E-value=0.0079  Score=47.38  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999988753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0083  Score=47.01  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++-+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5789999999999999988753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.75  E-value=0.0077  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.239  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988743

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.75  E-value=0.012  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .=|.+-|+-|+|||+|++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34778999999999999999854

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.72  E-value=0.011  Score=46.61  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6889999999999999998864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.72  E-value=0.009  Score=45.22  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=20.5

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..++|.+-|++|+||||....+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457788889999999999998864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.68  E-value=0.0079  Score=44.96  Aligned_cols=20  Identities=30%  Similarity=0.272  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |+++|++|+||||+..++..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999998875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.64  E-value=0.0082  Score=48.71  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --++++|++|||||.|.+.+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            3578999999999999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.63  E-value=0.0087  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      ++.++|++|+|||||++-+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7899999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.57  E-value=0.0088  Score=46.37  Aligned_cols=21  Identities=29%  Similarity=0.339  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            455699999999999988753

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.52  E-value=0.019  Score=45.42  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|+.|+|||||++.+.+-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            3689999999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.0095  Score=46.00  Aligned_cols=23  Identities=26%  Similarity=0.167  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -.+++.|++|+|||+++..+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998853

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.0073  Score=50.87  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=16.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      ++++||++|||||+++..+.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            56899999999999885443

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.44  E-value=0.01  Score=45.37  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999998875

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.006  Score=44.97  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=19.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..-|.+.|.+|+||||+.+.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999885

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.01  Score=45.66  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+++.|++|+|||+++..+...
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999988753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.07  E-value=0.027  Score=43.38  Aligned_cols=24  Identities=25%  Similarity=0.191  Sum_probs=19.7

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHh
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ....-|+++|+.||||||.+-++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345688999999999999877665

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.03  E-value=0.014  Score=45.87  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ..|++.|++|+|||+|++.+..
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4699999999999999998874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.02  E-value=0.016  Score=47.49  Aligned_cols=23  Identities=13%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+.|-+.|.+|+|||||+.++..
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            58999999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.01  E-value=0.014  Score=42.90  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=19.7

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+=|.+-|.+|+|||||.+++..
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45578999999999999998863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=93.98  E-value=0.0097  Score=46.53  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|++|+|||||++.+.+-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999999865

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.92  E-value=0.0088  Score=47.51  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ++.++|++|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            899999999999999986654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.015  Score=44.23  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++.|++|+|||++++.++..
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHH
Confidence            899999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.012  Score=45.86  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+.++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999999886

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.016  Score=44.06  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+++.|++|+|||+++..+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            4899999999999999999753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.77  E-value=0.016  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            489999999999999987763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.018  Score=42.16  Aligned_cols=23  Identities=17%  Similarity=0.257  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      =+.+.|++|+|||+|..++..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999998543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.75  E-value=0.018  Score=42.63  Aligned_cols=25  Identities=16%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhc
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      ...+=|++-|..||||||+++.+..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.65  E-value=0.018  Score=45.18  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -+.++|+.|+|||||++.+.+-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999998865

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.61  E-value=0.018  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      =++|.|++|+|||+|..+|..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.61  E-value=0.019  Score=44.09  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=17.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .-|+++|+.||||||.+-++.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            356889999999999887764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.56  E-value=0.025  Score=48.22  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-+|+++|++|||||-|++++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998853

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=93.52  E-value=0.016  Score=44.64  Aligned_cols=22  Identities=27%  Similarity=0.253  Sum_probs=14.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..-|+++|+.||||||.+-++.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3458889999999999877765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.02  Score=44.06  Aligned_cols=21  Identities=29%  Similarity=0.406  Sum_probs=18.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 028037          101 LKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .=|+++|+.||||||.+-++.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            457889999999999998875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.47  E-value=0.02  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.445  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            489999999999999999984

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.41  E-value=0.022  Score=43.69  Aligned_cols=19  Identities=32%  Similarity=0.242  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      ++++|+.||||||.+-++.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5779999999999988775

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.021  Score=43.20  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =+++.|++|+|||+|+.+|..+
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999854

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.24  E-value=0.023  Score=44.43  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      -+.++|+.|+|||||++-+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            35699999999999999888653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.14  E-value=0.024  Score=44.88  Aligned_cols=22  Identities=27%  Similarity=0.307  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+.++|++|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5789999999999999988754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.06  E-value=0.039  Score=45.03  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .+|++.|..|+|||||++.++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999998853

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.02  E-value=0.032  Score=41.72  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .=|++.|++|+|||++...+....+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999886544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.87  E-value=0.027  Score=44.69  Aligned_cols=22  Identities=18%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .-|.+.|.+|+|||||+..+.+
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.78  E-value=0.028  Score=42.31  Aligned_cols=23  Identities=22%  Similarity=0.135  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNE  124 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~  124 (215)
                      =++|.|++|+|||+|+.++..+-
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999998543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.031  Score=41.74  Aligned_cols=20  Identities=20%  Similarity=0.297  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |++.|++|+||+|+...+.+
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45569999999999988764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.71  E-value=0.03  Score=43.95  Aligned_cols=21  Identities=29%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||+|++.+..
T Consensus        40 giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHH
Confidence            589999999999999998874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.68  E-value=0.034  Score=46.16  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .-.++++|++|||||-|.+++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHH
Confidence            3469999999999999999875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.036  Score=41.66  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+-|.+-|.+|+|||||.+.+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999998874

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.031  Score=44.06  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .+++.|++|+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            589999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.56  E-value=0.038  Score=41.30  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .=|++.|++|+|||++...+....+
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999999986544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.55  E-value=0.033  Score=41.43  Aligned_cols=20  Identities=30%  Similarity=0.310  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      -|+|-|..|+||||++..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999998775

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=92.43  E-value=0.017  Score=46.81  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      .+++.|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            68999999999999999885

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.36  E-value=0.035  Score=42.27  Aligned_cols=23  Identities=35%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -=+++.|++|+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35788999999999999999854

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.042  Score=41.71  Aligned_cols=23  Identities=17%  Similarity=0.223  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      -=+++.|++|+|||+|..+|+.+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.01  E-value=0.046  Score=40.47  Aligned_cols=26  Identities=19%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      ..-|++.|++|+|||++...++...+
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            35689999999999999998886544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.92  E-value=0.038  Score=43.59  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      .|++.|++|+|||+|++.+..
T Consensus        43 giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHH
Confidence            499999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.062  Score=43.45  Aligned_cols=20  Identities=25%  Similarity=0.398  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      .++++|++|||||.|+..+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            48999999999999999875

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.61  E-value=0.048  Score=40.76  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -=+++.|++|+|||+|+.+++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3567889999999999988763

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.053  Score=40.67  Aligned_cols=20  Identities=30%  Similarity=0.134  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      |++-|..|+||||++..+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999999988763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.86  E-value=0.066  Score=40.62  Aligned_cols=22  Identities=32%  Similarity=0.398  Sum_probs=19.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..=|.|.|-+|+|||||.+.+.
T Consensus        24 g~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4569999999999999998875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.59  E-value=0.042  Score=41.64  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -.|++-|..||||||+++.+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.071  Score=40.35  Aligned_cols=19  Identities=37%  Similarity=0.338  Sum_probs=15.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      |++-|..|+||||++..+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6666999999999777664

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.016  Score=42.02  Aligned_cols=19  Identities=26%  Similarity=0.462  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      .+|+|+.|+|||||+..+.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999874

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=89.94  E-value=0.081  Score=43.74  Aligned_cols=20  Identities=20%  Similarity=0.255  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 028037          102 KISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~  121 (215)
                      -+++.|++|+|||+|...+.
T Consensus       156 ~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999776

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.071  Score=40.82  Aligned_cols=21  Identities=24%  Similarity=0.278  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +++-|--|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            577899999999999999864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=89.66  E-value=0.096  Score=40.68  Aligned_cols=20  Identities=25%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|.+|+|||+|+.++..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888763

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.097  Score=39.44  Aligned_cols=22  Identities=5%  Similarity=0.067  Sum_probs=19.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 028037          101 LKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      --+++.|++|+|||+++..+..
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3489999999999999997764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=89.59  E-value=0.091  Score=40.66  Aligned_cols=19  Identities=16%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      .++.|++|+|||+|+.++.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6789999999999998875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=89.57  E-value=0.13  Score=37.72  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      .+=|.+.|..|+||||+.+-|....+
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~g~   28 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSWGY   28 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHCCC
Confidence            35577899999999999988765433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.1  Score=40.05  Aligned_cols=21  Identities=24%  Similarity=0.219  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -+++.|++|+|||+++..+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.14  Score=41.44  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             eeeeEEEEcCCCCCHHHHHHHHh
Q 028037           99 VSLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus        99 ~~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      ..+=|.|-|.+|+|||||.+.+.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHH
Confidence            46889999999999999987764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.1  Score=39.53  Aligned_cols=21  Identities=29%  Similarity=0.582  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -|++=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478889999999999998874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.79  E-value=0.074  Score=41.82  Aligned_cols=18  Identities=17%  Similarity=0.348  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHHH
Q 028037          103 ISLLGDCQIGKTSFVVKY  120 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~  120 (215)
                      -+++|+.|+|||+++..+
T Consensus        27 nvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEEECCTTTCSTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            379999999999999766

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=88.72  E-value=0.11  Score=42.24  Aligned_cols=20  Identities=25%  Similarity=0.292  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 028037          103 ISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~  122 (215)
                      +++.|++|+|||.|++.+.+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44569999999999998874

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=88.18  E-value=0.13  Score=39.71  Aligned_cols=53  Identities=19%  Similarity=0.200  Sum_probs=32.4

Q ss_pred             EEEEEEecCCCCCCCcc-chhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 028037          148 IAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN  201 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~-~~~~~~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~  201 (215)
                      +.+-+.|+++.-..... .......+|.++++.+. +..++..+...++.++...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~  169 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYA  169 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHB
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhc
Confidence            56888898765433222 22223457888777764 6777877766666665543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.00  E-value=0.11  Score=42.37  Aligned_cols=26  Identities=31%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             ceeeeEEEEcCCCCCHHHHHHHHhcC
Q 028037           98 LVSLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus        98 ~~~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      +..++|+|=|.-|+||||+++.+...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            55789999999999999999998753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.74  E-value=0.15  Score=40.80  Aligned_cols=23  Identities=13%  Similarity=0.144  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      =|+.++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            38999999999999999888754

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.70  E-value=0.17  Score=41.20  Aligned_cols=23  Identities=26%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++|+|=|.-||||||+++.+.+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            57999999999999999998875

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.41  E-value=0.16  Score=38.48  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 028037          103 ISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~~~  123 (215)
                      +.+.|++|+|||-|++..+..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.25  E-value=0.15  Score=38.42  Aligned_cols=19  Identities=26%  Similarity=0.142  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      |++-|..|+||||++..+.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999888775

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.82  E-value=0.16  Score=41.21  Aligned_cols=19  Identities=21%  Similarity=0.333  Sum_probs=16.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      -+++|+.|+|||+++..+.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3588999999999999873

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.62  E-value=0.084  Score=42.34  Aligned_cols=19  Identities=21%  Similarity=0.361  Sum_probs=14.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 028037          103 ISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       103 IvllGd~~vGKTSLi~r~~  121 (215)
                      |.+-|++|+||||+.+.|.
T Consensus         7 IgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEESCC---CCTHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8899999999999998775

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=86.53  E-value=0.18  Score=41.01  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhc
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++|.|=|.-||||||+++.+.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46799999999999999998863

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.21  E-value=0.19  Score=41.48  Aligned_cols=24  Identities=13%  Similarity=0.174  Sum_probs=20.3

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHhcC
Q 028037          100 SLKISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      .-+++|+|.+|+|||+++..++..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            457999999999999998877643

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.69  E-value=0.22  Score=38.93  Aligned_cols=59  Identities=14%  Similarity=0.053  Sum_probs=32.1

Q ss_pred             EEEEEEecCCCCCCCccchhhc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-CCCceE
Q 028037          148 IAFSIWDVGGDSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QVTKQS  207 (215)
Q Consensus       148 ~~l~i~Dt~G~e~~~~~~~~~~-~~a~~iilvfdit~~~Sf~~i~~wl~~i~~~~-~~~~pi  207 (215)
                      +.+-+.|+++.-.......... ..++.++++ -..+..++..+...++.+.+.. ..+.++
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~-~~~~~~s~~~~~~~~~~i~~~~~~~~~~~  179 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIV-CSGEMMAMYAANNISKGIVKYANSGSVRL  179 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEE-ECSSHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecc-cchhHHHHHHHHHHHHHHHhhhhcccccc
Confidence            5677888876543333222222 345555555 4466677777766666665432 234444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.68  E-value=0.34  Score=35.98  Aligned_cols=25  Identities=20%  Similarity=0.234  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      +-|.+.|..|+||||+.+-|....+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~G~   27 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDLGV   27 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC
Confidence            5577999999999999988764433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=85.48  E-value=0.31  Score=36.29  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 028037          101 LKISLLGDCQIGKTSFVVKYVGNEQ  125 (215)
Q Consensus       101 ~KIvllGd~~vGKTSLi~r~~~~~f  125 (215)
                      |-|.+.|..|+||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4567899999999999998865544

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=85.32  E-value=0.28  Score=39.43  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 028037          102 KISLLGDCQIGKTSFVVKYVG  122 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~  122 (215)
                      -++++|++|||||.+...+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            478899999999999997764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=0.24  Score=38.37  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=26.6

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeecc
Q 028037          174 AILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHIII  214 (215)
Q Consensus       174 ~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~~  214 (215)
                      .+++|-. -++-+..+..+.++.+++.. -.+.-+|+|+++
T Consensus       200 ~~~lVt~-pe~~~~~~~~r~~~~l~~~g-i~~~~vVvN~v~  238 (296)
T d1ihua1         200 RLVLVAR-LQKSTLQEVARTHLELAAIG-LKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEE-SCHHHHHHHHHHHHHHHHHT-CCCEEEEEEEEC
T ss_pred             eeeEecC-cchhHHHHHHHHHHHHHhcC-CCceEEEEcCCc
Confidence            4555543 45678888888888888765 344456777764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.11  E-value=0.23  Score=41.30  Aligned_cols=85  Identities=8%  Similarity=0.005  Sum_probs=44.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeeeEEEEEEECCeEEEEEEEecCCCCCCCccchhhccCCcEEEEEE
Q 028037          102 KISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF  179 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~~f~~--~~~t~g~~~~~~~v~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~iilvf  179 (215)
                      =|++.|+.|+||||.++.++..-...  ..-|+....   ...+++. ..+++-...| ..|.......++..==+|++=
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPi---E~~~~~~-~q~~v~~~~~-~~~~~~l~~~lR~dPDvi~ig  234 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI---EFDIDGI-GQTQVNPRVD-MTFARGLRAILRQDPDVVMVG  234 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC---CSCCSSS-EEEECBGGGT-BCHHHHHHHHGGGCCSEEEES
T ss_pred             eEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCc---ccccCCC-CeeeecCCcC-CCHHHHHHHHHhhcCCEEEec
Confidence            39999999999999999998632111  111111110   0111121 2233322222 235555555555443455566


Q ss_pred             eCCChhhHHHHH
Q 028037          180 DLTSRCTLNSIV  191 (215)
Q Consensus       180 dit~~~Sf~~i~  191 (215)
                      .+.|.++...+.
T Consensus       235 EiRd~~ta~~a~  246 (401)
T d1p9ra_         235 EIRDLETAQIAV  246 (401)
T ss_dssp             CCCSHHHHHHHH
T ss_pred             CcCChHHHHHHH
Confidence            788887766543

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.04  E-value=0.25  Score=38.13  Aligned_cols=40  Identities=5%  Similarity=0.030  Sum_probs=24.1

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeec
Q 028037          172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQVTKQSLFFHII  213 (215)
Q Consensus       172 a~~iilvfdit~~~Sf~~i~~wl~~i~~~~~~~~piIlVa~~  213 (215)
                      .+.+++| -.-+..++..+...++.+.+...+ +.-++++..
T Consensus       183 ~~~~vlV-~~p~~~~~~~~~r~~~~l~~~~~~-~~~iV~N~~  222 (279)
T d1ihua2         183 RTKVLLV-TLPETTPVLEAANLQADLERAGIH-PWGWIINNS  222 (279)
T ss_dssp             TEEEEEE-ECSSHHHHHHHHHHHHHHHHTTCC-CCEEEEEEE
T ss_pred             cccceEe-ccccHhHHHHHHHHHHHHHhcCCC-ccEEEEcCC
Confidence            3445555 445677888888888877766533 333445553

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.71  E-value=0.19  Score=39.13  Aligned_cols=15  Identities=27%  Similarity=0.361  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 028037          103 ISLLGDCQIGKTSFV  117 (215)
Q Consensus       103 IvllGd~~vGKTSLi  117 (215)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.22  E-value=0.22  Score=39.20  Aligned_cols=16  Identities=19%  Similarity=0.389  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHH
Q 028037          103 ISLLGDCQIGKTSFVV  118 (215)
Q Consensus       103 IvllGd~~vGKTSLi~  118 (215)
                      ++|.|.+|+|||+.+.
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            7899999999997653

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.14  E-value=0.23  Score=39.41  Aligned_cols=22  Identities=36%  Similarity=0.748  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 028037          102 KISLLGDCQIGKTSFVVKYVGN  123 (215)
Q Consensus       102 KIvllGd~~vGKTSLi~r~~~~  123 (215)
                      |+.++|++|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999999999998754

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.26  E-value=0.5  Score=37.54  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=17.8

Q ss_pred             eeeEEEEcCCCCCHHHHHHHH
Q 028037          100 SLKISLLGDCQIGKTSFVVKY  120 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~  120 (215)
                      .+=|-|-|.+|+|||||...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHH
Confidence            567788999999999988755

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=81.55  E-value=0.31  Score=36.90  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             eeeEEEEcCCCCCHHHHHHHHh
Q 028037          100 SLKISLLGDCQIGKTSFVVKYV  121 (215)
Q Consensus       100 ~~KIvllGd~~vGKTSLi~r~~  121 (215)
                      .--+++.|+++.|||.|+..++
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            3468999999999999998776

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=80.58  E-value=0.5  Score=34.47  Aligned_cols=21  Identities=19%  Similarity=0.243  Sum_probs=17.4

Q ss_pred             eeEEEEcCC-CCCHHHHHHHHh
Q 028037          101 LKISLLGDC-QIGKTSFVVKYV  121 (215)
Q Consensus       101 ~KIvllGd~-~vGKTSLi~r~~  121 (215)
                      -|+.+.|-. ||||||+.--+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            478899996 999999887664