Citrus Sinensis ID: 028049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSLEH
Secondary Structure (PSIPRED)
cccccHHHHcccccccEEEcccccccccccccccccccHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccHHHHHcccccHHHHHHHHccccccccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHEEEEEccccccccccccccccccccHHHHHHHHHHHHHcHcEEEEccHHHHHHHHccHHHHHHHHHccHccccccccEEcccHcHHcccEEEEEcccccEEEEccccccccccccEEEEEcccccHHHcEHHHEcccccEEEEccHHHHHHHHcccccccccccccccccccccHHHHEEEccccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITlslhgsrgvenflkfpklQTITQALhiedcnslplNLLHLANMEHLEKLFIEesnledwnvdcagevqkmpkLHSVLIWncsnvkdltwlvfapnlkclrildcddmeeiisVENFEKLIEVSEMMGELNLFSgleslslgnasnlKAYVHRSLEH
Flexible Loop (DISEMBL)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLEslslgnasnlkayvhrsleh
Low Complexity Region (SEG)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSLEH
Disordered region (IsUnstruct)
********ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGN**************
Disordered Region (DISOPRED)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF*************NLFSGLESLSLGNASNLKAYVHRSLE*
Disordered Region (DISEMBL)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSLEH
Disordered Region (DISPRO)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVE************GELNLFSGLESLSLGNASNLKAYVHR*L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSLEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.845	0.203	0.283	7e-12
Q9FLB4	874	Putative disease resistan	no	no	0.794	0.194	0.291	1e-11
O64973	889	Disease resistance protei	no	no	0.766	0.184	0.301	1e-08
P60838	894	Probable disease resistan	no	no	0.686	0.164	0.306	1e-08
O22727	967	Probable disease resistan	no	no	0.733	0.162	0.311	2e-08
Q9SI85	893	Probable disease resistan	no	no	0.827	0.198	0.274	6e-07
Q9LVT3	948	Probable disease resistan	no	no	0.696	0.157	0.285	7e-07
O64790	762	Probable disease resistan	no	no	0.738	0.207	0.281	9e-07
P60839	884	Probable disease resistan	no	no	0.658	0.159	0.284	9e-07
Q8L3R3	885	Disease resistance protei	no	no	0.359	0.087	0.414	2e-06

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 31/212 (14%)

Query: 9   ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68
           IS  + L+VLR+   G+     V     L  + ++L             T++L  +  +E
Sbjct: 623 ISGLTSLKVLRLFVSGFPEDPCVLNELQLLENLQTL-------------TITLGLASILE 669

Query: 69  NFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKM 128
            FL   +L + T+AL IE+ N     +  +A M+ L++L   +S++ +  V     V  +
Sbjct: 670 QFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPL 729

Query: 129 ---------PKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIE 179
                    P L  V +  C+ ++DLTWL+FAPNL  LR++   D++E+I+ E  E+   
Sbjct: 730 HIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQ--- 786

Query: 180 VSEMMGELNLFSGLESLSLGNASNLKAYVHRS 211
                  L  F  L+ L L N   LK ++HR 
Sbjct: 787 -----QNLIPFQELKELRLENVQMLK-HIHRG 812

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 41  AESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN-----SLPLNL 95
            + L+++I  ++ L L+T++L  S G+E FL   +  + T+ L +++ +      +PL  
Sbjct: 635 TDKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLAT 694

Query: 96  LHLANM-----EHLEKLFIEESNLEDWNVDCAGEVQK---MPKLHSVLIWNCSNVKDLTW 147
           +  +        H+ K+ IE S+  +  +     V++      L  V + NC+ +KDLTW
Sbjct: 695 ISSSRFLEIQDSHIPKIEIEGSSSNESEI-VGPRVRRDISFINLRKVRLDNCTGLKDLTW 753

Query: 148 LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY 207
           LVFAP+L  L ++   D+E IIS     +L +  E+ G +  F  LE L+L N   LK+ 
Sbjct: 754 LVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP-FRELEFLTLRNLGQLKSI 812

Query: 208 VHRSL 212
               L
Sbjct: 813 YRDPL 817

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 15/179 (8%)

Query: 43  SLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANME 102
           SL+KE+  LE L +ITL +  S   E  L   +L    + +  +      + +L L  M 
Sbjct: 650 SLVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMG 709

Query: 103 HLEKLFIEESNLEDWNVD---CAGEVQKMPK------LHSVLIWNCSNVKDLTWLVFAPN 153
           +L KL I+   + +  ++    +    K P       L  V I  C  +KDLTWL+FAPN
Sbjct: 710 NLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPN 769

Query: 154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
           L  L +    ++E+IIS E  E      E    +  F  LE+L L     LK    ++L
Sbjct: 770 LTFLEVGFSKEVEDIISEEKAE------EHSATIVPFRKLETLHLFELRGLKRIYAKAL 822

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 16/163 (9%)

Query: 59  LSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWN 118
           +S+  S  VE  L  P+L    Q L +         +L L +M++L K+ I +  + +  
Sbjct: 666 ISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIK 725

Query: 119 VDC---------AGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEII 169
           ++          + + Q +  L +V I +C  +KDLTWL+FAPNL  L +LD + +E II
Sbjct: 726 IERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGII 785

Query: 170 SVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
              N EK + +S ++     F  LESL L N + L++   + L
Sbjct: 786 ---NQEKAMTMSGIIP----FQKLESLRLHNLAMLRSIYWQPL 821

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O22727|DRL16_ARATH Probable disease resistance protein At1g61190 OS=Arabidopsis thaliana GN=At1g61190 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 39  ADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHL 98
            DA S++KE+  LE L      L  +   E      +L  +   L IE     P +L  L
Sbjct: 645 GDA-SVLKELQQLENLQ----DLRITESAELISLDQRLAKLISVLRIEGFLQKPFDLSFL 699

Query: 99  ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLH------------SVLIWNCSNVKDLT 146
           A+ME+L  L +E S   + N+ C     +   LH             ++I  C ++KDLT
Sbjct: 700 ASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDLT 759

Query: 147 WLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKA 206
           W++FAPNL  L I D  ++ EII   N EK I ++ +   +  F  LE L L     L++
Sbjct: 760 WILFAPNLVNLDIRDSREVGEII---NKEKAINLTSI---ITPFQKLERLFLYGLPKLES 813

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 34/211 (16%)

Query: 9   ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68
           ISS   L+VL++    Y  R        L  D  ++ KE+  LE L ++T ++      +
Sbjct: 636 ISSLHNLKVLKL----YGSR--------LPWDLNTV-KELETLEHLEILTTTIDPR--AK 680

Query: 69  NFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCA------ 122
            FL   +L + ++ L I   N    +         LE L +    L ++ + C       
Sbjct: 681 QFLSSHRLMSRSRLLQIFGSNIFSPD-------RQLESLSVSTDKLREFEIMCCSISEIK 733

Query: 123 -GEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVS 181
            G +     L  V I+NC  +++LT+L+FAP L+ L ++D  D+E+II   N EK  E  
Sbjct: 734 MGGICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDII---NEEKACEGE 790

Query: 182 EMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
           +    +  F  L+ L+L +   LK    R L
Sbjct: 791 D--SGIVPFPELKYLNLDDLPKLKNIYRRPL 819

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis thaliana GN=At5g47260 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 19/168 (11%)

Query: 8   LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV 67
           +I+S   LQVLR+ H              +S D + LM++I  L+ L  ++L++ GS  +
Sbjct: 609 VIASLLNLQVLRLFHS-------------VSMDLK-LMEDIQLLKSLKELSLTVRGSSVL 654

Query: 68  ENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK 127
           +  L   +L +  + LH+ +   +   +L L  +  L +L I   N+ +  +D    +Q+
Sbjct: 655 QRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCELDILGCNILEITIDWRCTIQR 714

Query: 128 --MPK---LHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIIS 170
             +P+   + ++ I  C  ++DLTWL+ AP L  L + +C  MEE+IS
Sbjct: 715 EIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVIS 762

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 27/185 (14%)

Query: 34  GKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPL 93
           G  +  DA S++KE+  L+ L  + ++L     +       +L  +   L IE     P 
Sbjct: 525 GSKVHGDA-SVLKELQKLQNLQHLAITLSAELSLNQ-----RLANLISILGIEGFLQKPF 578

Query: 94  NLLHLANMEHLEKLFIEESNLEDWNVDC------AGEVQKMPK------LHSVLIWNCSN 141
           +L  LA+ME+L  L+++ S   +  + C      +  ++  PK      L  + +  C +
Sbjct: 579 DLSFLASMENLSSLWVKNSYFSE--IKCRESETASSYLRINPKIPCFTNLSRLGLSKCHS 636

Query: 142 VKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA 201
           +KDLTW++FAPNL  L I D  ++ EII+ E    L  ++        F  LE L L N 
Sbjct: 637 IKDLTWILFAPNLVYLYIEDSREVGEIINKEKATNLTSITP-------FLKLERLILYNL 689

Query: 202 SNLKA 206
             L++
Sbjct: 690 PKLES 694

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 10/151 (6%)

Query: 58  TLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDW 117
           T+ +  S  +E  L   +L    Q + ++  +   + +L L ++  L ++FI    + D 
Sbjct: 667 TIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLREVFIGGCGMRDI 726

Query: 118 NVDCAGEVQK--MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFE 175
            ++    +     P L  VLI  C+ +KDLTWL+FAPNL  L + +   +EEIIS E   
Sbjct: 727 IIERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEKAS 786

Query: 176 KLIEVSEMMGELNLFSGLESLSLGNASNLKA 206
                     ++  F  LE L L +   LK+
Sbjct: 787 --------TADIVPFRKLEYLHLWDLPELKS 809

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 5/82 (6%)

Query: 131 LHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLF 190
           L +V I  C  +KDLTWL+FAPNL  LR+  C  +E+IIS E    ++E      E+  F
Sbjct: 745 LSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLE-----KEILPF 799

Query: 191 SGLESLSLGNASNLKAYVHRSL 212
             LE L+L   S LK+    +L
Sbjct: 800 QKLECLNLYQLSELKSIYWNAL 821

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
24461865	892	NBS-LRR type disease resistance protein	0.943	0.226	0.419	7e-27
24461866	890	NBS-LRR type disease resistance protein	0.976	0.234	0.370	8e-26
160693138	271	NBS-LRR type disease resistance protein	0.803	0.634	0.426	1e-25
160693146	271	NBS-LRR type disease resistance protein	0.803	0.634	0.426	2e-25
160693212	271	NBS-LRR type disease resistance protein	0.803	0.634	0.431	4e-25
160693154	271	NBS-LRR type disease resistance protein	0.803	0.634	0.420	5e-24
160693206	271	NBS-LRR type disease resistance protein	0.803	0.634	0.420	6e-24
160693148	271	NBS-LRR type disease resistance protein	0.803	0.634	0.420	7e-24
160693204	271	NBS-LRR type disease resistance protein	0.803	0.634	0.420	7e-24
160693170	271	NBS-LRR type disease resistance protein	0.803	0.634	0.420	7e-24

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 132/217 (60%), Gaps = 15/217 (6%)

Query: 4   IPQQLISSFSKLQVLRMLHCGYAHRSIVE--EGKVLSADAESLMKEIHCLEQLNLITLSL 61
           IP+QLIS+ S+L+VLRM   G +H +  E  E  +L    E +++E+  L+ L +ITL+L
Sbjct: 622 IPRQLISNLSRLRVLRMF--GASHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTL 679

Query: 62  HGSRGVENFLKFPKLQTITQAL---HIEDCNSLPLNLLHLANMEHLEKLFIEESN-LEDW 117
             S G+++FL   KL++ TQAL   H +D  SL ++   LA+++ L +L I  S  LE+ 
Sbjct: 680 RSSYGLQSFLNSHKLRSCTQALLLQHFKDSTSLEVS--ALADLKQLNRLQIANSVILEEL 737

Query: 118 NVDCAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFE 175
            +D A EVQ+     L+ V I NC  +KDLT+LVFAPNLK +++  C  MEEI S   F 
Sbjct: 738 KMDYAEEVQQFAFRSLNMVEICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKF- 796

Query: 176 KLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
              EV E+M  LN F  L++L +  A NLK+   +SL
Sbjct: 797 --AEVPEVMANLNPFEKLQNLEVAGARNLKSIYWKSL 831

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/216 (37%), Positives = 130/216 (60%), Gaps = 7/216 (3%)

Query: 1   MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLS 60
           ++ IP+QLIS+ S+L VLRM    ++      E  +L    E +++E+  L+ L +I+ +
Sbjct: 618 LTTIPRQLISNLSRLHVLRMFAASHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFT 677

Query: 61  LHGSRGVENFLKFPKLQTITQALHIEDCN-SLPLNLLHLANMEHLEKLFIEE-SNLEDWN 118
           L  S G+++FL   KL++ T+AL ++  N S  L +  LA+++ L +L+I E   LE+  
Sbjct: 678 LRSSHGLQSFLSSHKLRSCTRALLLQCFNDSTSLEVSALADLKQLNRLWITECKKLEELK 737

Query: 119 VDCAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEK 176
           +D   EVQ+     L  V I  CS +KDLT+LVFAPNL+ + ++ C  MEE++S+  F  
Sbjct: 738 MDYTREVQQFVFHSLKKVEILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFA- 796

Query: 177 LIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
             EV E++  LN F+ L++L L  A+NLK+   + L
Sbjct: 797 --EVPEVVANLNPFAKLQNLKLFGATNLKSIYWKPL 830

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693138|gb|ABX46334.1| NBS-LRR type disease resistance protein [Citrus medica] gi|160693140|gb|ABX46335.1| NBS-LRR type disease resistance protein [Citrus medica]

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS L VLRM   GY    +  E  VL    E L+KE+  L+ L +++L+L 
Sbjct: 92  KIPLQLISNFSWLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLGLKHLEVLSLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEE-SNLEDWNVD 120
            SR +++FL   KL++ TQA+ ++D   S P+++  LA+++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHKLRSCTQAMLLQDFEGSTPVDVSGLADLKRLKRLRISDCYELVELKID 211

Query: 121 CAGEVQK--MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ+     L S  +  CS +KDLT LVF PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQRHGFHSLQSFEVNFCSKLKDLTLLVFIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus medica

Species: Citrus medica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693146|gb|ABX46338.1| NBS-LRR type disease resistance protein [Citrus medica] gi|160693164|gb|ABX46347.1| NBS-LRR type disease resistance protein [Citrus limettioides] gi|160693168|gb|ABX46349.1| NBS-LRR type disease resistance protein [Citrus limon]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 110/176 (62%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS L VLRM   GY    +  E  VL    E L+KE+  L+ L +++L+L 
Sbjct: 92  KIPLQLISNFSWLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLGLKHLEVLSLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEE-SNLEDWNVD 120
            SR +++FL   KL++ TQA+ ++D   S P+++  LA+++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHKLRSCTQAMLLQDFEGSTPVDVSGLADLKRLKRLRISDCYELVELKID 211

Query: 121 CAGEVQK--MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ+     L S  +  CS +KDLT LVF PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQRHGFHSLQSFEVNFCSKLKDLTLLVFIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus medica

Species: Citrus medica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693212|gb|ABX46371.1| NBS-LRR type disease resistance protein [Citrus australasica]

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  LE L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLEHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEES-NLEDWNVD 120
            SR +++FL    LQ+ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLQSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ+     L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQRYGFHSLQSFEVNFCSKLKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus australasica

Species: Citrus australasica

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693154|gb|ABX46342.1| NBS-LRR type disease resistance protein [Citrus webberi]

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  L+ L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEE-SNLEDWNVD 120
            SR +++FL    L++ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ      L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus webberi

Species: Citrus webberi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693206|gb|ABX46368.1| NBS-LRR type disease resistance protein [Citrus hanaju]

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  L+ L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEE-SNLEDWNVD 120
            SR +++FL    L++ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ      L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus hanaju

Species: Citrus hanaju

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693148|gb|ABX46339.1| NBS-LRR type disease resistance protein [Citrus halimii] gi|160693152|gb|ABX46341.1| NBS-LRR type disease resistance protein [Citrus webberi] gi|160693202|gb|ABX46366.1| NBS-LRR type disease resistance protein [Citrus ichangensis]

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  L+ L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEES-NLEDWNVD 120
            SR +++FL    L++ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ      L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus halimii

Species: Citrus halimii

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693204|gb|ABX46367.1| NBS-LRR type disease resistance protein [Citrus hanaju]

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  L+ L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEE-SNLEDWNVD 120
            SR +++FL    L++ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ      L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus hanaju

Species: Citrus hanaju

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160693170|gb|ABX46350.1| NBS-LRR type disease resistance protein [Citrus amblycarpa]

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 4/176 (2%)

Query: 3   EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH 62
           +IP QLIS+FS+L VLRM   GY    +  E  VL    E L+KE+  L+ L ++ L+L 
Sbjct: 92  KIPLQLISNFSRLHVLRMFGTGYFSCGLYPEDSVLFGGGELLVKELLDLKHLEVLRLTLG 151

Query: 63  GSRGVENFLKFPKLQTITQALHIEDC-NSLPLNLLHLANMEHLEKLFIEES-NLEDWNVD 120
            SR +++FL    L++ TQAL ++D   S  +++  LAN++ L++L I +   L +  +D
Sbjct: 152 SSRALQSFLTSHMLRSCTQALLLQDFKGSTSVDVPGLANLKQLKRLRISDCYELVELKID 211

Query: 121 CAGEVQKMP--KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENF 174
            AGEVQ      L S  +  CS +KDLT LV  PNLK + + DC+ MEEIISV  F
Sbjct: 212 YAGEVQHFGFHSLQSFEVSFCSELKDLTLLVLIPNLKSIAVTDCEAMEEIISVGEF 267

Source: Citrus amblycarpa

Species: Citrus amblycarpa

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.841	0.202	0.303	8e-14
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.757	0.181	0.329	1.3e-13
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.775	0.189	0.307	2.7e-13
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.607	0.147	0.318	1.1e-11
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.761	0.184	0.322	6.1e-11
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.831	0.184	0.319	1.4e-10
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.752	0.169	0.298	1.8e-10
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.766	0.184	0.301	1.7e-09
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.892	0.214	0.288	8.3e-09
TAIR|locus:2036214	851	AT1G15890 [Arabidopsis thalian	0.747	0.188	0.308	2.2e-08

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 8.0e-14, P = 8.0e-14
 Identities = 64/211 (30%), Positives = 105/211 (49%)

Query:     9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68
             IS  + L+VLR+   G+      E+  VL+        E+  LE L  +T++L  +  +E
Sbjct:   623 ISGLTSLKVLRLFVSGFP-----EDPCVLN--------ELQLLENLQTLTITLGLASILE 669

Query:    69 NFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKM 128
              FL   +L + T+AL IE+ N     +  +A M+ L++L   +S++ +  V     V  +
Sbjct:   670 QFLSNQRLASCTRALRIENLNPQSSVISFVATMDSLQELHFADSDIWEIKVKRNETVLPL 729

Query:   129 ---------PKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIE 179
                      P L  V +  C+ ++DLTWL+FAPNL  LR++   D++E+I+ E  E+   
Sbjct:   730 HIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQQ-- 787

Query:   180 VSEMMGELNLFSGLESLSLGNASNLKAYVHR 210
                    L  F  L+ L L N   LK ++HR
Sbjct:   788 ------NLIPFQELKELRLENVQMLK-HIHR 811

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 59/179 (32%), Positives = 95/179 (53%)

Query:    37 LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLL 96
             +S D  SL++E+  LE L ++ +S+  S  VE  L  P+L    Q L +         +L
Sbjct:   645 MSLDM-SLVEELQLLEHLEVLNISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESSGVL 703

Query:    97 HLANMEHLEKLFIEESNLEDWNVD---CAGEVQKMPK---LHS---VLIWNCSNVKDLTW 147
              L +M++L K+ I +  + +  ++    +    + PK   LH+   V I +C  +KDLTW
Sbjct:   704 TLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTW 763

Query:   148 LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKA 206
             L+FAPNL  L +LD + +E II   N EK + +S ++     F  LESL L N + L++
Sbjct:   764 LLFAPNLTSLEVLDSELVEGII---NQEKAMTMSGIIP----FQKLESLRLHNLAMLRS 815

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 56/182 (30%), Positives = 100/182 (54%)

Query:    42 ESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN---SLPLNLLHL 98
             + L+++I  ++ L L+T++L  S G+E FL   +  + T+ L +++ +   SL + L  +
Sbjct:   636 DKLVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATI 695

Query:    99 AN---ME----HLEKLFIEESNLEDWNVDCAGEVQK---MPKLHSVLIWNCSNVKDLTWL 148
             ++   +E    H+ K+ IE S+  +  +     V++      L  V + NC+ +KDLTWL
Sbjct:   696 SSSRFLEIQDSHIPKIEIEGSSSNESEI-VGPRVRRDISFINLRKVRLDNCTGLKDLTWL 754

Query:   149 VFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV 208
             VFAP+L  L ++   D+E IIS     +L +  E+ G +  F  LE L+L N   LK+ +
Sbjct:   755 VFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIP-FRELEFLTLRNLGQLKS-I 812

Query:   209 HR 210
             +R
Sbjct:   813 YR 814

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 42/132 (31%), Positives = 71/132 (53%)

Query:    43 SLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANME 102
             SL++E+  LE L ++T+ +  S  +E  L   +L    Q + ++  +   + +L L ++ 
Sbjct:   652 SLLEELERLENLEVLTIEIISSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIG 711

Query:   103 HLEKLFIEESNLEDWNVDCAGEVQK--MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRIL 160
              L ++FI    + D  ++    +     P L  VLI  C+ +KDLTWL+FAPNL  L + 
Sbjct:   712 DLREVFIGGCGMRDIIIERNTSLTSPCFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVW 771

Query:   161 DCDDMEEIISVE 172
             +   +EEIIS E
Sbjct:   772 NSRQIEEIISQE 783

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 57/177 (32%), Positives = 82/177 (46%)

Query:    44 LMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEH 103
             LMKE+  LE L LIT  +      E F  +P++    Q ++I D    P   + +  +  
Sbjct:   651 LMKELQLLEHLELITTDISSGLVGELFC-YPRVGRCIQHIYIRDHWERPEESVGVLVLPA 709

Query:   104 LEKL-FIEESNLEDWNVDCAGEVQKM----PK---LHSVLIWNCSNVKDLTWLVFAPNLK 155
             +  L +I   N   W +       K     P    L +V I  C  +KDLTWL+FAPNL 
Sbjct:   710 IHNLCYISIWNCWMWEIMIEKTPWKKNLTNPNFSNLSNVRIEGCDGLKDLTWLLFAPNLI 769

Query:   156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
              LR+  C  +E+IIS E    ++E      E+  F  LE L+L   S LK+    +L
Sbjct:   770 NLRVWGCKHLEDIISKEKAASVLEK-----EILPFQKLECLNLYQLSELKSIYWNAL 821

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 67/210 (31%), Positives = 97/210 (46%)

Query:     9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68
             IS  S+L  LR L         + E  V   DA S++KE+  LE L      L  +   E
Sbjct:   624 ISGISRLLSLRWLS--------LRESNV-HGDA-SVLKELQQLENLQ----DLRITESAE 669

Query:    69 NFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCA-GEVQ- 126
                   +L  +   L IE     P +L  LA+ME+L  L +E S   + N+ C   E + 
Sbjct:   670 LISLDQRLAKLISVLRIEGFLQKPFDLSFLASMENLYGLLVENSYFSEINIKCRESETES 729

Query:   127 -------KMP---KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEK 176
                    K+P    L  ++I  C ++KDLTW++FAPNL  L I D  ++ EII   N EK
Sbjct:   730 SYLHINPKIPCFTNLTGLIIMKCHSMKDLTWILFAPNLVNLDIRDSREVGEII---NKEK 786

Query:   177 LIEVSEMMGELNLFSGLESLSLGNASNLKA 206
              I ++ +   +  F  LE L L     L++
Sbjct:   787 AINLTSI---ITPFQKLERLFLYGLPKLES 813

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 54/181 (29%), Positives = 89/181 (49%)

Query:     8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV 67
             +I+S   LQVLR+ H              +S D + LM++I  L+ L  ++L++ GS  +
Sbjct:   609 VIASLLNLQVLRLFHS-------------VSMDLK-LMEDIQLLKSLKELSLTVRGSSVL 654

Query:    68 ENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESN-LE---DWNVDCAG 123
             +  L   +L +  + LH+ +   +   +L L  +  L +L I   N LE   DW      
Sbjct:   655 QRLLSIQRLASSIRRLHLTETTIVDGGILSLNAIFSLCELDILGCNILEITIDWRCTIQR 714

Query:   124 EV-QKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVEN-FEKLIEVS 181
             E+  +   + ++ I  C  ++DLTWL+ AP L  L + +C  MEE+IS +    KL   S
Sbjct:   715 EIIPQFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVISKDKAMAKLGNTS 774

Query:   182 E 182
             E
Sbjct:   775 E 775

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 54/179 (30%), Positives = 81/179 (45%)

Query:    43 SLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANME 102
             SL+KE+  LE L +ITL +  S   E  L   +L    + +  +      + +L L  M 
Sbjct:   650 SLVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEESVRVLTLPTMG 709

Query:   103 HLEKLFIEESNLEDWNVD---CAGEVQKMP------KLHSVLIWNCSNVKDLTWLVFAPN 153
             +L KL I+   + +  ++    +    K P       L  V I  C  +KDLTWL+FAPN
Sbjct:   710 NLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPN 769

Query:   154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHRSL 212
             L  L +    ++E+IIS E  E      E    +  F  LE+L L     LK    ++L
Sbjct:   770 LTFLEVGFSKEVEDIISEEKAE------EHSATIVPFRKLETLHLFELRGLKRIYAKAL 822

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 62/215 (28%), Positives = 100/215 (46%)

Query:     9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE 68
             I+  SKL  LR L  G  + +I+ +  V+S      +KE+H LE L ++T+ +  +  +E
Sbjct:   624 IAGISKLSSLRTL--GLRNSNIMLD--VMS------VKELHLLEHLEILTIDIVSTMVLE 673

Query:    69 NFLKFPKLQTITQALHIEDC---NSLPLNLLHLANMEHLEKLFI---EESNLE----DWN 118
               +    L    Q + I  C   +      L L  M+ L  L +   E S +E     WN
Sbjct:   674 QMIDAGTLMNCMQEVSIR-CLIYDQEQDTKLRLPTMDSLRSLTMWNCEISEIEIERLTWN 732

Query:   119 VDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLI 178
              +          L  V+I  CS++KDLTWL+FAPN+  L I   + ++E+IS      + 
Sbjct:   733 TNPTSPC--FFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVT 790

Query:   179 EVSEM-MGELNLFSGLESLSLGNASNLKAYVHRSL 212
             E  +  + ++  F  L+ L L +   LK+    SL
Sbjct:   791 EEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISL 825

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2036214 AT1G15890 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 53/172 (30%), Positives = 92/172 (53%)

Query:    43 SLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNS--LPLNLLHLAN 100
             SLM+E+  LE L ++T ++  +  +E+     +L +  QAL + + ++  + LN + L  
Sbjct:   647 SLMEELLLLEHLKVLTATIKDALILESIQGVDRLVSSIQALCLRNMSAPVIILNTVALGG 706

Query:   101 MEHLEKLFIEESNLE-DWNVDCAGEVQ--KMPKL-H-SVL-IWNCSNVKDLTWLVFAPNL 154
             ++HLE +  + S ++ DW     GE++    P   H SV+ I+N    +DLTWL+FA NL
Sbjct:   707 LQHLEIVGSKISEIKIDWERKGRGELKCTSSPGFKHLSVVEIFNLEGPRDLTWLLFAQNL 766

Query:   155 KCLRILDCDDMEEIISVENFEKLIEVSEMMGELNL-FSGLESLSLGNASNLK 205
             + L +     +EEII   N EK + ++ +   + + F  LE L +     LK
Sbjct:   767 RRLSVTLSLTIEEII---NKEKGMSITNVHPNIVVPFGKLEFLEVRGLDELK 815

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.33
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.15
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.66
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.08
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.07
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.02
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.01
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.87
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.62
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.57
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.5
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.5
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.49
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.35
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.26
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.03
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.73
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.67
PRK15386	426	type III secretion protein GogB; Provisional	96.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.96
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.72
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.63
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	95.57
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.18
PLN03150	623	hypothetical protein; Provisional	95.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.88
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	93.86
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.33
KOG4341	483	consensus F-box protein containing LRR [General fu	93.1
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.52
KOG4341	483	consensus F-box protein containing LRR [General fu	89.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.36
PLN03150	623	hypothetical protein; Provisional	89.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.47
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	87.79
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	85.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	84.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.61
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	84.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	83.51
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	82.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	81.73

>PLN03210 Resistant to P

Probab=99.34  E-value=3.4e-12  Score=124.32  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=38.1

Q ss_pred             ccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCccccccc
Q 028049          103 HLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEII  169 (214)
Q Consensus       103 ~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~  169 (214)
                      +|+.|++.+ +.+..++...    ..+++|+.|.|.+|++++.+|....+++|++|++++|.++..++
T Consensus       779 sL~~L~Ls~n~~l~~lP~si----~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p  842 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSI----QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP  842 (1153)
T ss_pred             cchheeCCCCCCccccChhh----hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence            455555555 4444443222    24667777777777777777654466777777777776665543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.33  E-value=3.3e-12  Score=124.49  Aligned_cols=43  Identities=19%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccc
Q 028049          128 MPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIIS  170 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~  170 (214)
                      +++|+.|.+++|+.+..+|. +..+++|+.|++.+|.+++.++.
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence            35778888888888887774 66788888888888887776653

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-11  Score=116.25  Aligned_cols=152  Identities=28%  Similarity=0.553  Sum_probs=110.7

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED   87 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~   87 (214)
                      +++.|++||+|++..+..             ..+...+++++.|++|+.+.+++.+..-++.+..+.++.++.+.+.+.+
T Consensus       637 i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~  703 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG  703 (889)
T ss_pred             hhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc
Confidence            344566666666665542             2245568899999999999998766544566777777778888888755


Q ss_pred             CCCCCchhhhcccccccchhhccccccceeeccccccc--CC-CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcc
Q 028049           88 CNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEV--QK-MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDD  164 (214)
Q Consensus        88 c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~--~~-~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~  164 (214)
                      |.. ....+++..+.+|+.|.|.+.+..++...+.+..  .. |+++.++.+.+|+.++.+.|..++|+|+.|.+.+|..
T Consensus       704 ~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~  782 (889)
T KOG4658|consen  704 CSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL  782 (889)
T ss_pred             ccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccc
Confidence            433 3333577888999999999833333333332221  22 8899999999999999999988999999999999999


Q ss_pred             ccccccccc
Q 028049          165 MEEIISVEN  173 (214)
Q Consensus       165 l~~i~~~~~  173 (214)
                      ++++++...
T Consensus       783 ~e~~i~~~k  791 (889)
T KOG4658|consen  783 LEDIIPKLK  791 (889)
T ss_pred             cccCCCHHH
Confidence            999987543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.76  E-value=1.2e-08  Score=98.15  Aligned_cols=22  Identities=45%  Similarity=0.564  Sum_probs=17.2

Q ss_pred             CCChhhhccCcccceEEccccCc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      .+|.. ++++++|++|++.+|..
T Consensus       155 ~~p~~-~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113        155 EIPND-IGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             cCChH-HhcCCCCCEEECccCcc
Confidence            45654 88888888888888875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.66  E-value=3.8e-08  Score=94.71  Aligned_cols=16  Identities=19%  Similarity=0.227  Sum_probs=13.8

Q ss_pred             ccCcccceEEccccCc
Q 028049           10 SSFSKLQVLRMLHCGY   25 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~   25 (214)
                      +.+++|++|++.+|..
T Consensus       137 ~~l~~L~~L~Ls~n~~  152 (968)
T PLN00113        137 GSIPNLETLDLSNNML  152 (968)
T ss_pred             cccCCCCEEECcCCcc
Confidence            4689999999999976

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.62  E-value=3.3e-09  Score=95.06  Aligned_cols=152  Identities=14%  Similarity=0.183  Sum_probs=84.6

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccc------cchh--hHhhhhhccCCccCceeeEEecccchhhhccC
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKV------LSAD--AESLMKEIHCLEQLNLITLSLHGSRGVENFLK   72 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~------~~~~--~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~   72 (214)
                      |++||..+.-+|+-|-.||+++++...+|-.+.-.+      +++.  ...-+..|.++..|++|.++... ..+..++.
T Consensus       138 IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Pt  216 (1255)
T KOG0444|consen  138 IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPT  216 (1255)
T ss_pred             cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCC
Confidence            466777666777777777777776644443322110      1111  22345666677777777765321 22333333


Q ss_pred             CcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC
Q 028049           73 FPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA  151 (214)
Q Consensus        73 ~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l  151 (214)
                      +-.-..+++.++++ |+++..+|..+-++++|++|++++++++++....+    .-.+|++|+++. +.|..+|. ++.+
T Consensus       217 sld~l~NL~dvDlS-~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~----~W~~lEtLNlSr-NQLt~LP~avcKL  290 (1255)
T KOG0444|consen  217 SLDDLHNLRDVDLS-ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG----EWENLETLNLSR-NQLTVLPDAVCKL  290 (1255)
T ss_pred             chhhhhhhhhcccc-ccCCCcchHHHhhhhhhheeccCcCceeeeeccHH----HHhhhhhhcccc-chhccchHHHhhh
Confidence            22234577777774 46776666666677899999999988877753211    123455555554 35555553 4444


Q ss_pred             CCccEEeE
Q 028049          152 PNLKCLRI  159 (214)
Q Consensus       152 ~~L~~L~i  159 (214)
                      ++|+.|.+
T Consensus       291 ~kL~kLy~  298 (1255)
T KOG0444|consen  291 TKLTKLYA  298 (1255)
T ss_pred             HHHHHHHh
Confidence            44444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.08  E-value=1e-06  Score=82.03  Aligned_cols=159  Identities=18%  Similarity=0.245  Sum_probs=86.9

Q ss_pred             CCCChhhhccCcccceEEccccCccccccccccc-c-----cchhhHh-hhhhccCCccCceeeEEecccchhhhccCCc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGK-V-----LSADAES-LMKEIHCLEQLNLITLSLHGSRGVENFLKFP   74 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~-~-----~~~~~~~-~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~   74 (214)
                      ..+| +||+.+.||+.++..+++.+..|..+... .     ....... ....++++++|+.|++.-.....++..+...
T Consensus       254 ~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v  332 (1081)
T KOG0618|consen  254 SNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV  332 (1081)
T ss_pred             hcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence            4678 68999999999999998875555443211 1     1111111 2333555677777777655544333211000


Q ss_pred             -------------c----------------------------------hhccccEEeecCCCCCCchh-hhcccccccch
Q 028049           75 -------------K----------------------------------LQTITQALHIEDCNSLPLNL-LHLANMEHLEK  106 (214)
Q Consensus        75 -------------~----------------------------------l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~  106 (214)
                                   +                                  -..||+.|++++ +.+.+++ +.+.++..|+.
T Consensus       333 ~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~Lee  411 (1081)
T KOG0618|consen  333 LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEE  411 (1081)
T ss_pred             hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHH
Confidence                         0                                  012456666655 4455555 45666667777


Q ss_pred             hhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049          107 LFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus       107 L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      |+++|++++.++...    ...++|++|.-.+ +.+..+|.+..++.|+.+++ +|+++.++
T Consensus       412 L~LSGNkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDl-S~N~L~~~  467 (1081)
T KOG0618|consen  412 LNLSGNKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDL-SCNNLSEV  467 (1081)
T ss_pred             HhcccchhhhhhHHH----HhhhhhHHHhhcC-CceeechhhhhcCcceEEec-ccchhhhh
Confidence            777776666665322    1234444444322 34445555555666666666 45666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.07  E-value=2.6e-07  Score=71.01  Aligned_cols=136  Identities=15%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..+|++ |-.|.||++|.++++....+|                ..+.+++.|++|.+.+.....+++=+.+   .+.++
T Consensus        46 ~~vppn-ia~l~nlevln~~nnqie~lp----------------~~issl~klr~lnvgmnrl~~lprgfgs---~p~le  105 (264)
T KOG0617|consen   46 TVVPPN-IAELKNLEVLNLSNNQIEELP----------------TSISSLPKLRILNVGMNRLNILPRGFGS---FPALE  105 (264)
T ss_pred             eecCCc-HHHhhhhhhhhcccchhhhcC----------------hhhhhchhhhheecchhhhhcCccccCC---Cchhh
Confidence            457877 889999999999998874332                2345566677777666555444432221   13455


Q ss_pred             EEeecCCC-CCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeE
Q 028049           82 ALHIEDCN-SLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRI  159 (214)
Q Consensus        82 ~L~l~~c~-~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i  159 (214)
                      .|++..-+ +-.++|..+-.|+.|+-|++.++.++.++.+.+    .+.+|+.|.+++ +.+-.+|. ++.+..|++|+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg----~lt~lqil~lrd-ndll~lpkeig~lt~lrelhi  180 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG----KLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHI  180 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh----hhcceeEEeecc-CchhhCcHHHHHHHHHHHHhc
Confidence            56654321 113343333456788888888888887765543    578888888877 36666774 667778888888


Q ss_pred             ecC
Q 028049          160 LDC  162 (214)
Q Consensus       160 ~~C  162 (214)
                      .+-
T Consensus       181 qgn  183 (264)
T KOG0617|consen  181 QGN  183 (264)
T ss_pred             ccc
Confidence            763

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.02  E-value=1.8e-05  Score=74.28  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=34.2

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .|+.|+++++ .++.++..++  .+|+.|++.++.+..++.      ..+++|+.|.+.+| +++.+|. ..+++|+.|+
T Consensus       284 sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~------~l~~sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~  352 (754)
T PRK15370        284 ELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSLTALPE------TLPPGLKTLEAGEN-ALTSLPA-SLPPELQVLD  352 (754)
T ss_pred             CCcEEECCCC-ccccCcccch--hhHHHHHhcCCccccCCc------cccccceeccccCC-ccccCCh-hhcCcccEEE
Confidence            4555555543 3333321111  245555555544443321      12345666666665 4555553 1135666666


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      ++++
T Consensus       353 Ls~N  356 (754)
T PRK15370        353 VSKN  356 (754)
T ss_pred             CCCC
Confidence            6665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.02  E-value=1.4e-06  Score=67.63  Aligned_cols=130  Identities=18%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED   87 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~   87 (214)
                      +.+..++++|++.++...                 .++.+. .+.+|+.|+++-..+..++.+..    ..+++.|++++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-----------------~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~   73 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-----------------TIENLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSN   73 (175)
T ss_dssp             --------------------------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S
T ss_pred             cccccccccccccccccc-----------------cccchhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCC
Confidence            456667889999998871                 244555 46788888877665555554433    24577777765


Q ss_pred             CCCCCchhhhc-ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC---c-ccCCCCCccEEeEecC
Q 028049           88 CNSLPLNLLHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL---T-WLVFAPNLKCLRILDC  162 (214)
Q Consensus        88 c~~l~~l~~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l---p-~~~~l~~L~~L~i~~C  162 (214)
                       +.+.++...+ ..+++|++|++.++.+..+.. . .....+++|+.|.+.+.|=-+.-   . .+..+|+|+.|+-...
T Consensus        74 -N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   74 -NRISSISEGLDKNLPNLQELYLSNNKISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -S---S-CHHHHHH-TT--EEE-TTS---SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             -CCCCccccchHHhCCcCCEEECcCCcCCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence             4555543222 346778888877755544321 0 11135777777777765432211   1 1334666666655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.01  E-value=7.9e-07  Score=79.41  Aligned_cols=125  Identities=18%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~  155 (214)
                      .+++|+|.. +++.++. ..+=++++|++|+++.+.++.+.++..   .+.++|+.|+++. +++.+++.  +..+..|+
T Consensus       270 kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W---sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le  344 (873)
T KOG4194|consen  270 KMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW---SFTQKLKELDLSS-NRITRLDEGSFRVLSQLE  344 (873)
T ss_pred             ccceeeccc-chhhhhhcccccccchhhhhccchhhhheeecchh---hhcccceeEeccc-cccccCChhHHHHHHHhh
Confidence            345555533 3344433 345567888999998888877766433   2578899999876 57777764  33455666


Q ss_pred             EEeEecC-------------cccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCCC
Q 028049          156 CLRILDC-------------DDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHR  210 (214)
Q Consensus       156 ~L~i~~C-------------~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~  210 (214)
                      +|.+++-             .+++.+.-.....+. .+++....+..+++|+.|.+.+ .+||+++.+
T Consensus       345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr  410 (873)
T KOG4194|consen  345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR  410 (873)
T ss_pred             hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC-ceeeecchh
Confidence            6665541             111111100000000 0001112455689999999887 457777765

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.87  E-value=3.7e-06  Score=75.27  Aligned_cols=64  Identities=19%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecC
Q 028049           98 LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDC  162 (214)
Q Consensus        98 l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C  162 (214)
                      +..+.+|++|++.++.+.-...|..+.-..+++|++|.+.| +++|.+|-  ...+++||+|++.+-
T Consensus       361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence            44456666666666444322222111112388899999988 58888874  556888888888663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.81  E-value=5.2e-06  Score=79.00  Aligned_cols=76  Identities=30%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             EEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccch-h---hHHH-------hhhcc---cCCCCCccCeeec
Q 028049          133 SVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFE-K---LIEV-------SEMMG---ELNLFSGLESLSL  198 (214)
Q Consensus       133 ~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~-~---l~~~-------~~~~~---~~~~f~~L~~L~l  198 (214)
                      .+.+.+|..-...+.+..+.+|+.|.|.+|...+..+...... .   ...+       ...+.   .....|+|+.|.+
T Consensus       698 ~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l  777 (889)
T KOG4658|consen  698 SLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSL  777 (889)
T ss_pred             hhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEE
Confidence            3333343333333446778999999999998876554221111 0   1000       01111   2245688999999


Q ss_pred             CccccccccC
Q 028049          199 GNASNLKAYV  208 (214)
Q Consensus       199 ~~cp~L~~i~  208 (214)
                      ..|+.++.+-
T Consensus       778 ~~~~~~e~~i  787 (889)
T KOG4658|consen  778 VSCRLLEDII  787 (889)
T ss_pred             ecccccccCC
Confidence            9998877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.72  E-value=5.7e-05  Score=47.95  Aligned_cols=58  Identities=22%  Similarity=0.350  Sum_probs=38.0

Q ss_pred             CCccEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          129 PKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       129 ~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      |+|++|.+++| +++.+|.  +..+++|++|+++ .+.++.+..              ..+..+++|++|++++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~-~N~l~~i~~--------------~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLS-NNNLTSIPP--------------DAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEET-SSSESEEET--------------TTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEcc-CCccCccCH--------------HHHcCCCCCCEEeCcCCc
Confidence            46777777776 7777763  4557777777777 445554432              245667777777777653

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.62  E-value=0.00017  Score=67.90  Aligned_cols=22  Identities=9%  Similarity=0.302  Sum_probs=12.0

Q ss_pred             CCCChhhhccCcccceEEccccCcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYA   26 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~   26 (214)
                      .+||+. +.  ++|+.|++.++...
T Consensus       214 tsLP~~-l~--~~L~~L~L~~N~Lt  235 (788)
T PRK15387        214 TTLPDC-LP--AHITTLVIPDNNLT  235 (788)
T ss_pred             CcCCcc-hh--cCCCEEEccCCcCC
Confidence            345654 32  25666666666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.61  E-value=9.3e-05  Score=69.58  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL  157 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L  157 (214)
                      ..|+.|++++ +.+..++. +  ..+|+.|+++++.+..++.       ..++|+.|+++++ ++..+|..  +++|+.|
T Consensus       342 ~~Lq~LdLS~-N~Ls~LP~-l--p~~L~~L~Ls~N~L~~LP~-------l~~~L~~LdLs~N-~Lt~LP~l--~s~L~~L  407 (788)
T PRK15387        342 SGLQELSVSD-NQLASLPT-L--PSELYKLWAYNNRLTSLPA-------LPSGLKELIVSGN-RLTSLPVL--PSELKEL  407 (788)
T ss_pred             cccceEecCC-CccCCCCC-C--CcccceehhhccccccCcc-------cccccceEEecCC-cccCCCCc--ccCCCEE
Confidence            4678888876 35555431 1  2467777777655655431       1356778888764 66766642  4567778


Q ss_pred             eEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCccc
Q 028049          158 RILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       158 ~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++++ .+..++..-  ..+..       +..+|..+..+++|+.|++.+.|
T Consensus       408 dLS~N-~LssIP~l~--~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        408 MVSGN-RLTSLPMLP--SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             EccCC-cCCCCCcch--hhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            77775 355544211  01111       12334455567778888887764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.61  E-value=3.9e-05  Score=64.25  Aligned_cols=13  Identities=31%  Similarity=0.187  Sum_probs=9.2

Q ss_pred             CCccCeeecCccc
Q 028049          190 FSGLESLSLGNAS  202 (214)
Q Consensus       190 f~~L~~L~l~~cp  202 (214)
                      .++|++|++.+|.
T Consensus       249 ~~~L~~L~l~~n~  261 (319)
T cd00116         249 NISLLTLSLSCND  261 (319)
T ss_pred             CCCceEEEccCCC
Confidence            4677888877773

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.61  E-value=9.9e-05  Score=69.35  Aligned_cols=31  Identities=16%  Similarity=0.205  Sum_probs=16.6

Q ss_pred             CccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049          130 KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC  162 (214)
Q Consensus       130 ~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C  162 (214)
                      +|+.|++.++ ++..+|. ...++|+.|++.+|
T Consensus       305 sL~~L~Ls~N-~Lt~LP~-~l~~sL~~L~Ls~N  335 (754)
T PRK15370        305 GITHLNVQSN-SLTALPE-TLPPGLKTLEAGEN  335 (754)
T ss_pred             hHHHHHhcCC-ccccCCc-cccccceeccccCC
Confidence            4555555543 4444443 12356777777665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.00017  Score=62.97  Aligned_cols=63  Identities=21%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             hccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccc-ccccee
Q 028049           47 EIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEE-SNLEDW  117 (214)
Q Consensus        47 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~-~~l~~l  117 (214)
                      .++.++++..|+++-..   +..++   .+..+++.|.+++|..++.++..++  .+|++|.+.+ .+++.+
T Consensus        47 r~~~~~~l~~L~Is~c~---L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         47 QIEEARASGRLYIKDCD---IESLP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HHHHhcCCCEEEeCCCC---CcccC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc
Confidence            34455777777776433   33332   3445788888888888877654343  4788888877 466554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.57  E-value=1.9e-05  Score=66.14  Aligned_cols=17  Identities=18%  Similarity=0.130  Sum_probs=14.0

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +..+++|+.|++.+|.+
T Consensus        77 l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          77 LTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HHhcCceeEEEccCCCC
Confidence            56788999999988877

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.50  E-value=0.00015  Score=46.00  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=17.3

Q ss_pred             ccEEeecCCCCCCchh-hhcccccccchhhcccccccee
Q 028049           80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDW  117 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l  117 (214)
                      ++.|+++++ .++.++ ..+..+++|++|+++++.+..+
T Consensus         3 L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i   40 (61)
T PF13855_consen    3 LESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSI   40 (61)
T ss_dssp             ESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEE
T ss_pred             CcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCcc
Confidence            444555544 344443 3344455555555555444444

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.50  E-value=6.2e-06  Score=70.88  Aligned_cols=150  Identities=12%  Similarity=0.136  Sum_probs=76.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccc------cchh-hHhhhhhccCCccCceeeEEecccchhhhccCCc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKV------LSAD-AESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP   74 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~------~~~~-~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~   74 (214)
                      .++|++ |+++-+|..|+..++...+.|+++....      ++.. -.+..++.-..+.|+.++..-.....++   ..-
T Consensus       127 ~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP---~~l  202 (565)
T KOG0472|consen  127 KELPDS-IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLP---PEL  202 (565)
T ss_pred             eecCch-HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCC---hhh
Confidence            356665 7788888888877777755554332110      0000 0001111111233444443222222222   111


Q ss_pred             chhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCC
Q 028049           75 KLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPN  153 (214)
Q Consensus        75 ~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~  153 (214)
                      .....+..|+++. +.+..+| .++....|+.|++..+.++.++.+.   ..+++++..|++++ ++++.+|. ++.+.+
T Consensus       203 g~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~---~~~L~~l~vLDLRd-Nklke~Pde~clLrs  276 (565)
T KOG0472|consen  203 GGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGENQIEMLPAEH---LKHLNSLLVLDLRD-NKLKEVPDEICLLRS  276 (565)
T ss_pred             cchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhcccHHHhhHHHH---hcccccceeeeccc-cccccCchHHHHhhh
Confidence            1112334444433 2333333 3445555666665555555544322   24688888888887 58899986 666788


Q ss_pred             ccEEeEec
Q 028049          154 LKCLRILD  161 (214)
Q Consensus       154 L~~L~i~~  161 (214)
                      |++|++++
T Consensus       277 L~rLDlSN  284 (565)
T KOG0472|consen  277 LERLDLSN  284 (565)
T ss_pred             hhhhcccC
Confidence            88888876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.49  E-value=2.1e-05  Score=71.21  Aligned_cols=142  Identities=18%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchh---------------
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV---------------   67 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l---------------   67 (214)
                      -||++ |-+|.-|.+||++++.....|++.+                ..+++-+|.++..++.++               
T Consensus        94 GiP~d-iF~l~dLt~lDLShNqL~EvP~~LE----------------~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   94 GIPTD-IFRLKDLTILDLSHNQLREVPTNLE----------------YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             CCCch-hcccccceeeecchhhhhhcchhhh----------------hhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            47876 8899999999999988755554443                333333333332222222               


Q ss_pred             ------hhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc--cccceeecccccccCCCCCccEEeeec
Q 028049           68 ------ENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE--SNLEDWNVDCAGEVQKMPKLHSVLIWN  138 (214)
Q Consensus        68 ------~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~--~~l~~l~~~~~~~~~~~~~L~~L~I~~  138 (214)
                            +.++--.+...+++.|.+++-+- ..+- -.++.|++|+.|.+++  ..+..++...+    .+.+|+.++++ 
T Consensus       157 LS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld----~l~NL~dvDlS-  230 (1255)
T KOG0444|consen  157 LSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD----DLHNLRDVDLS-  230 (1255)
T ss_pred             cccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchh----hhhhhhhcccc-
Confidence                  11111112234566777766332 1111 2466778888888887  33444443333    47899999997 


Q ss_pred             CcCCccCcc-cCCCCCccEEeEecCcccccc
Q 028049          139 CSNVKDLTW-LVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus       139 C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      |++|..+|. +-.+++|..|.+++ ++++++
T Consensus       231 ~N~Lp~vPecly~l~~LrrLNLS~-N~iteL  260 (1255)
T KOG0444|consen  231 ENNLPIVPECLYKLRNLRRLNLSG-NKITEL  260 (1255)
T ss_pred             ccCCCcchHHHhhhhhhheeccCc-Cceeee
Confidence            678888885 66789999999987 344444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.47  E-value=3.6e-06  Score=64.81  Aligned_cols=133  Identities=19%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      -.+++...|-+++++.+.-             .+.+.+|   .+|+.|.+....   ++.++....-.+.++.|.++ .+
T Consensus        30 f~~s~ITrLtLSHNKl~~v-------------ppnia~l---~nlevln~~nnq---ie~lp~~issl~klr~lnvg-mn   89 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVV-------------PPNIAEL---KNLEVLNLSNNQ---IEELPTSISSLPKLRILNVG-MN   89 (264)
T ss_pred             cchhhhhhhhcccCceeec-------------CCcHHHh---hhhhhhhcccch---hhhcChhhhhchhhhheecc-hh
Confidence            3455666667777765221             1123444   555565554332   33333222223456777764 34


Q ss_pred             CCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCccc
Q 028049           90 SLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDM  165 (214)
Q Consensus        90 ~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l  165 (214)
                      .+..+|..++.++.|+.|++.++++.+-..  .|.-..+..|+.|++.+ +.++.+|. ++.+.+|+.|.+++-+-+
T Consensus        90 rl~~lprgfgs~p~levldltynnl~e~~l--pgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   90 RLNILPRGFGSFPALEVLDLTYNNLNENSL--PGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             hhhcCccccCCCchhhhhhccccccccccC--CcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh
Confidence            544445557778889999988866543211  11112356688888887 46788875 888999999999885433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00013  Score=63.36  Aligned_cols=164  Identities=18%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCC--cchhccccEEee
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKF--PKLQTITQALHI   85 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~--~~l~~~l~~L~l   85 (214)
                      ++-.+++.+.|+++++=+..|            . ....=.+.|++|+.|.++-...   .....+  ....++++.|.|
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw------------~-~v~~i~eqLp~Le~LNls~Nrl---~~~~~s~~~~~l~~lK~L~l  204 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNW------------F-PVLKIAEQLPSLENLNLSSNRL---SNFISSNTTLLLSHLKQLVL  204 (505)
T ss_pred             hhhhCCcceeecchhhhHHhH------------H-HHHHHHHhcccchhcccccccc---cCCccccchhhhhhhheEEe
Confidence            344555555555555544333            1 1222234556666666653322   111111  123467888999


Q ss_pred             cCCCC-CCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEec
Q 028049           86 EDCNS-LPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILD  161 (214)
Q Consensus        86 ~~c~~-l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~  161 (214)
                      +.|.- -.++...+..+|+|+.|++.+++...+...   ...-++.|+.|+|++- .+.+++   -...+|.|+.|.+..
T Consensus       205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCC-cccccccccccccccchhhhhccc
Confidence            99832 122223355678999999988432212111   1134778999999874 566665   366788888888877


Q ss_pred             CcccccccccccchhhHHHhhhcccCCCCCccCeeecCc
Q 028049          162 CDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGN  200 (214)
Q Consensus       162 C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~  200 (214)
                      |.- .++-..+. +++       .-...||+|++|.+..
T Consensus       281 tgi-~si~~~d~-~s~-------~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  281 TGI-ASIAEPDV-ESL-------DKTHTFPKLEYLNISE  310 (505)
T ss_pred             cCc-chhcCCCc-cch-------hhhcccccceeeeccc
Confidence            632 22211100 000       1224688888887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=3e-05  Score=64.44  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             CCCCCccEEeeecCcCCccC--cccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049          126 QKMPKLHSVLIWNCSNVKDL--TWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA  201 (214)
Q Consensus       126 ~~~~~L~~L~I~~C~~L~~l--p~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c  201 (214)
                      ...|+|..|++++|..++.=  ..+..++.|++|.++.|..+-  +.     .       -.++...|+|.+|++.+|
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~-----~-------~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PE-----T-------LLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hH-----H-------eeeeccCcceEEEEeccc
Confidence            35788888888888887761  125567888888888887652  10     0       013445677777777665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.29  E-value=7.9e-05  Score=57.83  Aligned_cols=110  Identities=17%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             hc-cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhh-ccCCcchhccccEEeec
Q 028049            9 IS-SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVEN-FLKFPKLQTITQALHIE   86 (214)
Q Consensus         9 i~-~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~-l~~~~~l~~~l~~L~l~   86 (214)
                      ++ .+.+|++|++++|...                 .++.+..+++|+.|.+.-..+.++.. +.   +..++++.|+++
T Consensus        37 L~~~l~~L~~L~Ls~N~I~-----------------~l~~l~~L~~L~~L~L~~N~I~~i~~~l~---~~lp~L~~L~L~   96 (175)
T PF14580_consen   37 LGATLDKLEVLDLSNNQIT-----------------KLEGLPGLPRLKTLDLSNNRISSISEGLD---KNLPNLQELYLS   96 (175)
T ss_dssp             --TT-TT--EEE-TTS--S-------------------TT----TT--EEE--SS---S-CHHHH---HH-TT--EEE-T
T ss_pred             hhhhhcCCCEEECCCCCCc-----------------cccCccChhhhhhcccCCCCCCccccchH---HhCCcCCEEECc
Confidence            55 5889999999999872                 24456778899999988666655532 21   123578999997


Q ss_pred             CCCCCCchh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           87 DCNSLPLNL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        87 ~c~~l~~l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      + +.+.++.  ..+..+++|+.|++.++-+..-.....--...+|+|+.|+=...
T Consensus        97 ~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   97 N-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             T-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             C-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            6 3443332  45677889999998872222110000000124677777665443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.26  E-value=0.00011  Score=63.38  Aligned_cols=112  Identities=20%  Similarity=0.148  Sum_probs=71.8

Q ss_pred             CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL   83 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L   83 (214)
                      +|...|+.+++|..|+++++....                ...|++.+..|+.++++..+...+++...-    ..+...
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln~----------------LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEt  485 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLND----------------LPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLET  485 (565)
T ss_pred             cchHHHHhhhcceeeecccchhhh----------------cchhhhhhhhhheecccccccccchHHHhh----HHHHHH
Confidence            344458999999999999986622                345677888899999986643333322210    011222


Q ss_pred             eecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           84 HIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      .+..-.++.++. +.+.+|.+|..|++.++.++.++...    +.+.+|++|.++|-
T Consensus       486 llas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L----gnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  486 LLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL----GNMTNLRHLELDGN  538 (565)
T ss_pred             HHhccccccccChHHhhhhhhcceeccCCCchhhCChhh----ccccceeEEEecCC
Confidence            333334555555 44778888888888887777765433    25788888888874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=4.9e-05  Score=63.24  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             ccccEEeecCCCCCCchh--hhcccccccchhhccc-----cccceeecccccccCCCCCccEEeeecCcCCccCcc---
Q 028049           78 TITQALHIEDCNSLPLNL--LHLANMEHLEKLFIEE-----SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---  147 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~--~~l~~l~~L~~L~i~~-----~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---  147 (214)
                      .+++.|+|++|.++++..  .-+.++..|..|+++-     +.+..+...      -=++|..|+|+||.+--....   
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h------ise~l~~LNlsG~rrnl~~sh~~t  307 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH------ISETLTQLNLSGYRRNLQKSHLST  307 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh------hchhhhhhhhhhhHhhhhhhHHHH
Confidence            468999999999987654  2355667788888764     222211111      125788999999865322222   


Q ss_pred             -cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          148 -LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       148 -~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                       ....|+|..|++++|..++.-..              ..+..|+.|++|.++.|=
T Consensus       308 L~~rcp~l~~LDLSD~v~l~~~~~--------------~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLKNDCF--------------QEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             HHHhCCceeeeccccccccCchHH--------------HHHHhcchheeeehhhhc
Confidence             23579999999999988864211              145568899999988883

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.89  E-value=0.00024  Score=66.80  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=87.4

Q ss_pred             cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCC
Q 028049           11 SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNS   90 (214)
Q Consensus        11 ~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~   90 (214)
                      .+..||.|++.+++.               .+..+.-|.+..||++|.+.......++.-. ..+ ..-|+.|.+++ +.
T Consensus       357 ~~~~Lq~LylanN~L---------------td~c~p~l~~~~hLKVLhLsyNrL~~fpas~-~~k-le~LeeL~LSG-Nk  418 (1081)
T KOG0618|consen  357 NHAALQELYLANNHL---------------TDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-LRK-LEELEELNLSG-NK  418 (1081)
T ss_pred             hhHHHHHHHHhcCcc---------------cccchhhhccccceeeeeecccccccCCHHH-Hhc-hHHhHHHhccc-ch
Confidence            456778888888876               2234566788899999999866544444211 111 23467788887 56


Q ss_pred             CCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC-CCccEEeEecCcc
Q 028049           91 LPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA-PNLKCLRILDCDD  164 (214)
Q Consensus        91 l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l-~~L~~L~i~~C~~  164 (214)
                      ++.++..+.++..|++|.-.++.+..++. .    ..++.|+.++++ |++|+.+.. .... |+|++|+++|-..
T Consensus       419 L~~Lp~tva~~~~L~tL~ahsN~l~~fPe-~----~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  419 LTTLPDTVANLGRLHTLRAHSNQLLSFPE-L----AQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhhhHHHHhhhhhHHHhhcCCceeechh-h----hhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence            67776555667788888877777766652 1    357889999986 788887643 1122 7899999988764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.73  E-value=0.00018  Score=60.12  Aligned_cols=110  Identities=18%  Similarity=0.220  Sum_probs=69.7

Q ss_pred             CCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCC
Q 028049           72 KFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFA  151 (214)
Q Consensus        72 ~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l  151 (214)
                      .+-++.+.++.|.++. +++..+ .++..+++|..|+++++.+.++. .|.   ..+.|.++|.+.+ +.+++++-+..+
T Consensus       301 ESvKL~Pkir~L~lS~-N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~~-Gwh---~KLGNIKtL~La~-N~iE~LSGL~KL  373 (490)
T KOG1259|consen  301 ESVKLAPKLRRLILSQ-NRIRTV-QNLAELPQLQLLDLSGNLLAECV-GWH---LKLGNIKTLKLAQ-NKIETLSGLRKL  373 (490)
T ss_pred             hhhhhccceeEEeccc-cceeee-hhhhhcccceEeecccchhHhhh-hhH---hhhcCEeeeehhh-hhHhhhhhhHhh
Confidence            3345566777777765 455444 34667778888888875554431 122   3577788888876 466777666667


Q ss_pred             CCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          152 PNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       152 ~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      -+|..|++++ ++++++-.      +       .+++.+|.|+.+.+.+-|
T Consensus       374 YSLvnLDl~~-N~Ie~lde------V-------~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  374 YSLVNLDLSS-NQIEELDE------V-------NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhheeccccc-cchhhHHH------h-------cccccccHHHHHhhcCCC
Confidence            7777777766 23333311      1       377888999888887765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.67  E-value=0.0014  Score=61.17  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=40.5

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-------cccCC
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-------TWLVF  150 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-------p~~~~  150 (214)
                      ++|..|+|+++ ++..+ +.++.+++|+.|.+.+=.++... +. .....+.+|+.|+|+.=.+...-       .....
T Consensus       173 pNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~-~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~  248 (699)
T KOG3665|consen  173 PNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQ-DL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV  248 (699)
T ss_pred             CccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchh-hH-HHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence            46777777775 33444 34556666666666651111100 00 00124677777777653333221       12334


Q ss_pred             CCCccEEeEec
Q 028049          151 APNLKCLRILD  161 (214)
Q Consensus       151 l~~L~~L~i~~  161 (214)
                      +|+|+.|+.++
T Consensus       249 LpeLrfLDcSg  259 (699)
T KOG3665|consen  249 LPELRFLDCSG  259 (699)
T ss_pred             CccccEEecCC
Confidence            67777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.66  E-value=0.0022  Score=56.09  Aligned_cols=64  Identities=20%  Similarity=0.386  Sum_probs=48.9

Q ss_pred             ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccc
Q 028049           99 ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIIS  170 (214)
Q Consensus        99 ~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~  170 (214)
                      ..+.++++|+|+++.++.++.       .-++|+.|.|.+|.+++.+|.. .+++|++|++.+|.+++.++.
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-------LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-------LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-------CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccc
Confidence            344677888888877777651       1346999999999999988852 257899999999988877664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.36  E-value=0.0007  Score=58.35  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=23.4

Q ss_pred             CCCCChhhhccCcccceEEccccCc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      |+.||+++++.+.+|++||++++..
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~I  103 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNI  103 (498)
T ss_pred             cccCChhhccchhhhceecccccch
Confidence            6789999999999999999999977

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.0014  Score=57.19  Aligned_cols=18  Identities=11%  Similarity=0.194  Sum_probs=15.7

Q ss_pred             hhccCcccceEEccccCc
Q 028049            8 LISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~   25 (214)
                      .+..|++||+|.++.++.
T Consensus       167 i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  167 IAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             HHHhcccchhcccccccc
Confidence            457899999999999987

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.96  E-value=0.0093  Score=35.26  Aligned_cols=32  Identities=28%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             CccEEeeecCcCCccCcc-cCCCCCccEEeEecC
Q 028049          130 KLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDC  162 (214)
Q Consensus       130 ~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C  162 (214)
                      +|++|+++++ +++.+|. +..+++|+.|+++++
T Consensus         2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            5666777664 6666665 666777777777666

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.72  E-value=0.0056  Score=57.27  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             hhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc-cccc--eeecc
Q 028049           45 MKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLE--DWNVD  120 (214)
Q Consensus        45 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~--~l~~~  120 (214)
                      ..-..++++|..|||+-.+++++..+   +. .++|+.|.+++.+=...-. ..+-.+++|+.|+|+. .+..  .+...
T Consensus       166 ~~lc~sFpNL~sLDIS~TnI~nl~GI---S~-LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~q  241 (699)
T KOG3665|consen  166 SQLCASFPNLRSLDISGTNISNLSGI---SR-LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQ  241 (699)
T ss_pred             HHHhhccCccceeecCCCCccCcHHH---hc-cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHH
Confidence            34467889999999986666554322   22 3456666666543321110 2344678999999987 2211  12111


Q ss_pred             cccccCCCCCccEEeeecCcCCccCc------ccCCCCCccEEeEecCccc
Q 028049          121 CAGEVQKMPKLHSVLIWNCSNVKDLT------WLVFAPNLKCLRILDCDDM  165 (214)
Q Consensus       121 ~~~~~~~~~~L~~L~I~~C~~L~~lp------~~~~l~~L~~L~i~~C~~l  165 (214)
                      +-..+..+|.||.|+.++    +.+.      ....-|+|+.+.+.+|...
T Consensus       242 Ylec~~~LpeLrfLDcSg----Tdi~~~~le~ll~sH~~L~~i~~~~~~~~  288 (699)
T KOG3665|consen  242 YLECGMVLPELRFLDCSG----TDINEEILEELLNSHPNLQQIAALDCLAL  288 (699)
T ss_pred             HHHhcccCccccEEecCC----cchhHHHHHHHHHhCccHhhhhhhhhhcc
Confidence            111224589999998875    3331      1234566666666555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.63  E-value=0.0022  Score=53.77  Aligned_cols=14  Identities=14%  Similarity=0.078  Sum_probs=8.2

Q ss_pred             CcccceEEccccCc
Q 028049           12 FSKLQVLRMLHCGY   25 (214)
Q Consensus        12 L~~Lq~L~l~~~~~   25 (214)
                      -+.|.+||++++..
T Consensus       283 Wq~LtelDLS~N~I  296 (490)
T KOG1259|consen  283 WQELTELDLSGNLI  296 (490)
T ss_pred             Hhhhhhccccccch
Confidence            34566666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=95.57  E-value=0.004  Score=56.13  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ++.||.. |++|..|..|+++.++...+|...+                .| -|+.|-+.......++.   -..+...+
T Consensus       110 ~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC----------------~l-pLkvli~sNNkl~~lp~---~ig~~~tl  168 (722)
T KOG0532|consen  110 IRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLC----------------DL-PLKVLIVSNNKLTSLPE---EIGLLPTL  168 (722)
T ss_pred             ceecchh-hhhhhHHHHhhhccchhhcCChhhh----------------cC-cceeEEEecCccccCCc---ccccchhH
Confidence            4678874 8889999999998887744432222                12 24444444333333221   11233455


Q ss_pred             cEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeE
Q 028049           81 QALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRI  159 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i  159 (214)
                      ..|+.+.| .++.+++.+..+.+|+.|.+..+++..++.+..    .+ .|.+|+++ |+++.++|. +..+..|++|-+
T Consensus       169 ~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~----~L-pLi~lDfS-cNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  169 AHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC----SL-PLIRLDFS-CNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             HHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh----CC-ceeeeecc-cCceeecchhhhhhhhheeeee
Confidence            55666554 445565556677777777777766666543221    12 35556664 778888874 666777777776


Q ss_pred             ec
Q 028049          160 LD  161 (214)
Q Consensus       160 ~~  161 (214)
                      .+
T Consensus       242 en  243 (722)
T KOG0532|consen  242 EN  243 (722)
T ss_pred             cc
Confidence            43

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.23  E-value=0.011  Score=46.66  Aligned_cols=63  Identities=16%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             hhhhccCCccCceeeEEecccch-----hhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccc
Q 028049           44 LMKEIHCLEQLNLITLSLHGSRG-----VENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE  111 (214)
Q Consensus        44 ~l~eL~~L~~L~~L~i~~~~~~~-----l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~  111 (214)
                      .++.|..++.++.+.+.  ++..     ++.+-   ...++|+.|+|++|+.+++-. ..+..+++|+.|.|++
T Consensus       117 Gle~L~~l~~i~~l~l~--~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  117 GLEHLRDLRSIKSLSLA--NCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHHhccchhhhheec--cccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            45555555555554432  2222     22222   245677777777777776543 3455666777777666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.18  E-value=0.034  Score=48.20  Aligned_cols=61  Identities=15%  Similarity=0.169  Sum_probs=29.0

Q ss_pred             hccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccc
Q 028049           47 EIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEE  111 (214)
Q Consensus        47 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~  111 (214)
                      .+..+++|+.|++.-.....++....   ....++.|++++- .+..++........|+++.+.+
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~l~~~~~---~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSDLPKLLS---NLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hhhccccccccccCCchhhhhhhhhh---hhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcC
Confidence            45555666666665444433333220   2235666666553 3344432112223466666655

>PLN03150 hypothetical protein; Provisional

Probab=95.11  E-value=0.043  Score=50.91  Aligned_cols=79  Identities=9%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             ccEEeecCCCCCCchhhhcccccccchhhccccccc-eeecccccccCCCCCccEEeeecCcCCc-cCcc-cCCCCCccE
Q 028049           80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLE-DWNVDCAGEVQKMPKLHSVLIWNCSNVK-DLTW-LVFAPNLKC  156 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~-~l~~~~~~~~~~~~~L~~L~I~~C~~L~-~lp~-~~~l~~L~~  156 (214)
                      ++.|+|+++.--..++..+..+++|+.|+++++.+. .++...    ..+++|+.|+++++ ++. .+|. +..+++|+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----GSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH----hCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence            456677664322233355677888999998886664 232222    35889999999987 444 5664 778899999


Q ss_pred             EeEecCc
Q 028049          157 LRILDCD  163 (214)
Q Consensus       157 L~i~~C~  163 (214)
                      |+++++.
T Consensus       495 L~Ls~N~  501 (623)
T PLN03150        495 LNLNGNS  501 (623)
T ss_pred             EECcCCc
Confidence            9998875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.04  E-value=0.028  Score=33.18  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=25.0

Q ss_pred             cccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh
Q 028049           13 SKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE   68 (214)
Q Consensus        13 ~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~   68 (214)
                      ++||+|++.+++...+                -+++..+++|+.++++...+.+++
T Consensus         1 ~~L~~L~l~~N~i~~l----------------~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDL----------------PPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSH----------------GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCccc----------------CchHhCCCCCCEEEecCCCCCCCc
Confidence            5789999999987322                113677788888887755444433

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.88  E-value=0.025  Score=49.07  Aligned_cols=103  Identities=21%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             CCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCC
Q 028049           50 CLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMP  129 (214)
Q Consensus        50 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~  129 (214)
                      .+..|+.++++-.....++...   .....++.+.+++-..... ...+..+.++..+++.+..++.+.. .   ...++
T Consensus       184 ~~~~L~~L~ls~N~i~~l~~~~---~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~-~---~~~l~  255 (394)
T COG4886         184 NLSNLNNLDLSGNKISDLPPEI---ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPE-S---IGNLS  255 (394)
T ss_pred             hhhhhhheeccCCccccCchhh---hhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeeccc-h---hcccc
Confidence            4466777776654444444321   2334577777766432222 2345556666666655544443211 1   12467


Q ss_pred             CccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049          130 KLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus       130 ~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      +++.|.++++ .+.+++.+..+.+++.|++.+
T Consensus       256 ~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~  286 (394)
T COG4886         256 NLETLDLSNN-QISSISSLGSLTNLRELDLSG  286 (394)
T ss_pred             ccceeccccc-cccccccccccCccCEEeccC
Confidence            7888888764 777777666778888888876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.28  E-value=0.0055  Score=48.35  Aligned_cols=66  Identities=21%  Similarity=0.436  Sum_probs=41.1

Q ss_pred             cccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC--cccCCCCCccEEeEecCccc
Q 028049           98 LANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--TWLVFAPNLKCLRILDCDDM  165 (214)
Q Consensus        98 l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p~~~~l~~L~~L~i~~C~~l  165 (214)
                      +..++.++.|.+.+ .++..+..+..+  ..+++|+.|+|++|+++++-  -++..+++|+.|++++.+..
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            44455566666665 555554433322  35778888888888887764  34556777777777776544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=0.0068  Score=50.31  Aligned_cols=80  Identities=20%  Similarity=0.313  Sum_probs=54.1

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      +.|.+-+.|+.+||+..              +...   .+..+.|++|.+++..++++..+...    ..|+.|+|+. +
T Consensus        16 sdl~~vkKLNcwg~~L~--------------DIsi---c~kMp~lEVLsLSvNkIssL~pl~rC----trLkElYLRk-N   73 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLD--------------DISI---CEKMPLLEVLSLSVNKISSLAPLQRC----TRLKELYLRK-N   73 (388)
T ss_pred             hHHHHhhhhcccCCCcc--------------HHHH---HHhcccceeEEeeccccccchhHHHH----HHHHHHHHHh-c
Confidence            34778889999999871              2222   34458899999998887777666433    3466777764 2


Q ss_pred             CCCchh--hhcccccccchhhccc
Q 028049           90 SLPLNL--LHLANMEHLEKLFIEE  111 (214)
Q Consensus        90 ~l~~l~--~~l~~l~~L~~L~i~~  111 (214)
                      .+.++.  .-+.++++|+.|++..
T Consensus        74 ~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   74 CIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             ccccHHHHHHHhcCchhhhHhhcc
Confidence            333332  3577888999998875

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=93.86  E-value=0.0044  Score=55.85  Aligned_cols=83  Identities=14%  Similarity=0.232  Sum_probs=52.4

Q ss_pred             ccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEe
Q 028049           80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLR  158 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~  158 (214)
                      |+.|-+++ +.++.++..++..++|..|+.+.+++..++....    .+.+|+.+.+.. +++.++|. +. --.|..|+
T Consensus       145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~----~l~slr~l~vrR-n~l~~lp~El~-~LpLi~lD  217 (722)
T KOG0532|consen  145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG----YLTSLRDLNVRR-NHLEDLPEELC-SLPLIRLD  217 (722)
T ss_pred             ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhh----hHHHHHHHHHhh-hhhhhCCHHHh-CCceeeee
Confidence            45565655 4556666455666778888877777666653322    367888888876 47777774 33 22356666


Q ss_pred             EecCcccccccc
Q 028049          159 ILDCDDMEEIIS  170 (214)
Q Consensus       159 i~~C~~l~~i~~  170 (214)
                      + .|+++..++-
T Consensus       218 f-ScNkis~iPv  228 (722)
T KOG0532|consen  218 F-SCNKISYLPV  228 (722)
T ss_pred             c-ccCceeecch
Confidence            5 5777766653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.33  E-value=0.049  Score=25.28  Aligned_cols=16  Identities=19%  Similarity=0.262  Sum_probs=7.0

Q ss_pred             CccEEeeecCcCCccCc
Q 028049          130 KLHSVLIWNCSNVKDLT  146 (214)
Q Consensus       130 ~L~~L~I~~C~~L~~lp  146 (214)
                      +|+.|+|++|. ++.+|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            55666666653 55443

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=93.10  E-value=0.016  Score=50.49  Aligned_cols=38  Identities=21%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             CCCCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCc
Q 028049          126 QKMPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCD  163 (214)
Q Consensus       126 ~~~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~  163 (214)
                      ..-++|+.+.+.+|.++.+.-.   ....+.|+.+++.+|.
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            3456777777777766554421   2234445555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.26  E-value=0.17  Score=42.62  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEeccc-chhhhccCCcchhccccEEeecCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGS-RGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +..+-+++||+.++....|.            + ...=++.+++|+.|.++-... +.+..++   --..+++.|.+++-
T Consensus        68 ~~~~~v~elDL~~N~iSdWs------------e-I~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT  131 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWS------------E-IGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT  131 (418)
T ss_pred             HHhhhhhhhhcccchhccHH------------H-HHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC
Confidence            34566667777777665552            1 112245668888888763332 1222332   01246788888663


Q ss_pred             CCC--Cchhhhcccccccchhhccccccc
Q 028049           89 NSL--PLNLLHLANMEHLEKLFIEESNLE  115 (214)
Q Consensus        89 ~~l--~~l~~~l~~l~~L~~L~i~~~~l~  115 (214)
                       ++  +..-+++..+|.++.|.++.+++.
T Consensus       132 -~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  132 -GLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             -CCChhhhhhhhhcchhhhhhhhccchhh
Confidence             22  111134555666666666554333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.52  E-value=0.11  Score=45.68  Aligned_cols=86  Identities=22%  Similarity=0.379  Sum_probs=47.0

Q ss_pred             ccccEEeecCC-CCCCchh----hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcc---c
Q 028049           78 TITQALHIEDC-NSLPLNL----LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---L  148 (214)
Q Consensus        78 ~~l~~L~l~~c-~~l~~l~----~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---~  148 (214)
                      +.++.|++++| ......+    ......++|++|++.. ..+......+..  ...++|+.|.+.+|..++.-..   .
T Consensus       214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~--~~c~~L~~L~l~~c~~lt~~gl~~i~  291 (482)
T KOG1947|consen  214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA--SRCPNLETLSLSNCSNLTDEGLVSIA  291 (482)
T ss_pred             chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH--hhCCCcceEccCCCCccchhHHHHHH
Confidence            35666666663 2221111    1123345566666665 333332221111  2367888888888877654421   3


Q ss_pred             CCCCCccEEeEecCccc
Q 028049          149 VFAPNLKCLRILDCDDM  165 (214)
Q Consensus       149 ~~l~~L~~L~i~~C~~l  165 (214)
                      ..+++|++|++++|..+
T Consensus       292 ~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  292 ERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HhcCcccEEeeecCccc
Confidence            45778888888888777

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.46  E-value=0.24  Score=43.40  Aligned_cols=140  Identities=19%  Similarity=0.268  Sum_probs=77.3

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCC-ccCceeeEEecccchhhhc--cCCcchhccccEEeec
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCL-EQLNLITLSLHGSRGVENF--LKFPKLQTITQALHIE   86 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~l~~l--~~~~~l~~~l~~L~l~   86 (214)
                      .....||+|+..+|...              ....+..|+.- .+|+.+.+.-  +..+...  .....-...|+.+++.
T Consensus       291 ~~c~~lq~l~~s~~t~~--------------~d~~l~aLg~~~~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e  354 (483)
T KOG4341|consen  291 CGCHALQVLCYSSCTDI--------------TDEVLWALGQHCHNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLE  354 (483)
T ss_pred             hhhhHhhhhcccCCCCC--------------chHHHHHHhcCCCceEEEeccc--cchhhhhhhhhhhcCChhhhhhccc
Confidence            34677888888888651              22334455443 5788877652  2111110  0001112356777777


Q ss_pred             CCCCCCchh--hhcccccccchhhccc-cccceeecc-cccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEeEe
Q 028049           87 DCNSLPLNL--LHLANMEHLEKLFIEE-SNLEDWNVD-CAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLRIL  160 (214)
Q Consensus        87 ~c~~l~~l~--~~l~~l~~L~~L~i~~-~~l~~l~~~-~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~i~  160 (214)
                      +|-....-.  +.-.+.+.|++|.+++ ..+..-.+. ..........|..+.+.+|+.+..-.  .+...++||.+++.
T Consensus       355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeee
Confidence            775543221  2224456788888775 222221110 01111346678899999998887543  35567788888888


Q ss_pred             cCccc
Q 028049          161 DCDDM  165 (214)
Q Consensus       161 ~C~~l  165 (214)
                      +|...
T Consensus       435 ~~q~v  439 (483)
T KOG4341|consen  435 DCQDV  439 (483)
T ss_pred             chhhh
Confidence            88654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.36  E-value=0.027  Score=52.53  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +.-|+.||.|++++++++.                 ...|.-+.+|+.||++.+....++++-..   .-.|+.|.|++ 
T Consensus       183 Lqll~ale~LnLshNk~~~-----------------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~---gc~L~~L~lrn-  241 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTK-----------------VDNLRRLPKLKHLDLSYNCLRHVPQLSMV---GCKLQLLNLRN-  241 (1096)
T ss_pred             HHHHHHhhhhccchhhhhh-----------------hHHHHhcccccccccccchhccccccchh---hhhheeeeecc-
Confidence            4456778888888888721                 22456678888889887776666655332   12467777766 


Q ss_pred             CCCCchhhhcccccccchhhccc
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEE  111 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~  111 (214)
                      +.++.+ -.+.++++|+.|++++
T Consensus       242 N~l~tL-~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  242 NALTTL-RGIENLKSLYGLDLSY  263 (1096)
T ss_pred             cHHHhh-hhHHhhhhhhccchhH
Confidence            334433 2345666777777655

>PLN03150 hypothetical protein; Provisional

Probab=89.22  E-value=0.49  Score=44.02  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=39.2

Q ss_pred             CCCCCccEEeeecCcCCc-cCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049          126 QKMPKLHSVLIWNCSNVK-DLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA  201 (214)
Q Consensus       126 ~~~~~L~~L~I~~C~~L~-~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c  201 (214)
                      ..+++|+.|+++++ ++. .+|. +..+++|+.|+++++.--..++.               .+..+++|+.|++.++
T Consensus       439 ~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~---------------~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        439 SKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE---------------SLGQLTSLRILNLNGN  500 (623)
T ss_pred             hCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCch---------------HHhcCCCCCEEECcCC
Confidence            35788999999886 444 5663 77789999999988643222322               3345556666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.47  E-value=0.52  Score=37.53  Aligned_cols=102  Identities=19%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             cCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhc-ccccccchhhccccccceeecccccccCCCCCc
Q 028049           53 QLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKL  131 (214)
Q Consensus        53 ~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L  131 (214)
                      ....++++-.+...++.++.    .+.|.+|.+++ +.++.+...+ ..+++|+.|.+.++++.++. +.+ ....+|.|
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~----l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~-dl~-pLa~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPH----LPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELG-DLD-PLASCPKL  115 (233)
T ss_pred             ccceecccccchhhcccCCC----ccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhh-hcc-hhccCCcc
Confidence            45555555333333333322    23466676654 4555543222 33456777777775554442 111 11345666


Q ss_pred             cEEeeecCcCCccCc-----ccCCCCCccEEeEecC
Q 028049          132 HSVLIWNCSNVKDLT-----WLVFAPNLKCLRILDC  162 (214)
Q Consensus       132 ~~L~I~~C~~L~~lp-----~~~~l~~L~~L~i~~C  162 (214)
                      +.|.+-+- .++.-.     .+..+|+|+.|+...-
T Consensus       116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence            66666542 111111     1345677777776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.79  E-value=0.33  Score=39.79  Aligned_cols=88  Identities=20%  Similarity=0.254  Sum_probs=52.1

Q ss_pred             cccEEeecCCC-CC-CchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCC
Q 028049           79 ITQALHIEDCN-SL-PLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFA  151 (214)
Q Consensus        79 ~l~~L~l~~c~-~l-~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l  151 (214)
                      +|+.|.++.-. ++ ..+.......++|++|+++++++..+.  .......+.+|..|.+.+|+-.+ +..     ...+
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls--tl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll  142 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS--TLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLLL  142 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc--ccchhhhhcchhhhhcccCCccc-cccHHHHHHHHh
Confidence            56777775431 11 122122345578888888885555431  11112357788888888885544 421     3347


Q ss_pred             CCccEEeEecCccccccc
Q 028049          152 PNLKCLRILDCDDMEEII  169 (214)
Q Consensus       152 ~~L~~L~i~~C~~l~~i~  169 (214)
                      |+|++|+-.++..-+...
T Consensus       143 ~~L~~LD~~dv~~~Ea~~  160 (260)
T KOG2739|consen  143 PSLKYLDGCDVDGEEAPE  160 (260)
T ss_pred             hhhccccccccCCccccc
Confidence            888998888887766554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=85.75  E-value=0.56  Score=23.04  Aligned_cols=15  Identities=27%  Similarity=0.452  Sum_probs=8.6

Q ss_pred             CccEEeEecCcccccc
Q 028049          153 NLKCLRILDCDDMEEI  168 (214)
Q Consensus       153 ~L~~L~i~~C~~l~~i  168 (214)
                      +|++|++++| +++++
T Consensus         1 ~L~~Ldls~n-~l~~i   15 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSI   15 (22)
T ss_dssp             TESEEEETSS-EESEE
T ss_pred             CccEEECCCC-cCEeC
Confidence            3566666666 55544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.67  E-value=0.4  Score=39.28  Aligned_cols=84  Identities=19%  Similarity=0.214  Sum_probs=48.2

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCc---cCcccCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVK---DLTWLVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~---~lp~~~~l~~L~  155 (214)
                      .++.+++.++ ++.++ ..++.+++|++|.+++++.... ....-.....|+|+++.+++ ++++   +++.+..+++|.
T Consensus        44 ~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhcc-ceeec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecC-Cccccccccchhhhhcchh
Confidence            3455555554 33333 3567778888888876322110 00000012358888888876 3544   344455677888


Q ss_pred             EEeEecCcccc
Q 028049          156 CLRILDCDDME  166 (214)
Q Consensus       156 ~L~i~~C~~l~  166 (214)
                      .|+..+|....
T Consensus       120 ~Ldl~n~~~~~  130 (260)
T KOG2739|consen  120 SLDLFNCSVTN  130 (260)
T ss_pred             hhhcccCCccc
Confidence            88888887665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.61  E-value=0.56  Score=41.23  Aligned_cols=139  Identities=22%  Similarity=0.250  Sum_probs=75.5

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEec-ccchhhh--ccCCcchhccccEEeec
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLH-GSRGVEN--FLKFPKLQTITQALHIE   86 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~-~~~~l~~--l~~~~~l~~~l~~L~l~   86 (214)
                      ...++|+.|++.+|...             .+.....-....++|+.++++.. .......  ........+++++|+++
T Consensus       185 ~~~~~L~~l~l~~~~~~-------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  251 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKI-------------TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS  251 (482)
T ss_pred             hhCchhhHhhhcccccC-------------ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence            45788888988888651             11111222345577777776531 0000000  00111223578889999


Q ss_pred             CCCCCCchh-hhc-ccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC--c-ccCCCCCccEEeEe
Q 028049           87 DCNSLPLNL-LHL-ANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--T-WLVFAPNLKCLRIL  160 (214)
Q Consensus        87 ~c~~l~~l~-~~l-~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p-~~~~l~~L~~L~i~  160 (214)
                      .|..+.+.. ..+ ...++|+.|.+.+ ..+..-.....  ...+++|++|+|++|..+..-  . ....+++|+.+.+.
T Consensus       252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i--~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI--AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH--HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            988665443 222 2256788888655 33332111000  135788999999999987542  1 23346666665555


Q ss_pred             cCc
Q 028049          161 DCD  163 (214)
Q Consensus       161 ~C~  163 (214)
                      ++.
T Consensus       330 ~~~  332 (482)
T KOG1947|consen  330 SLN  332 (482)
T ss_pred             hcC
Confidence            544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=84.05  E-value=0.86  Score=36.31  Aligned_cols=76  Identities=21%  Similarity=0.383  Sum_probs=48.1

Q ss_pred             ccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC---cccCCCCCccE
Q 028049           80 TQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL---TWLVFAPNLKC  156 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l---p~~~~l~~L~~  156 (214)
                      ...+++++- .+..+ ..++.++.|..|.+.++.+..|....   ...+|+|+.|.+.+ +++..+   -.+..+|.|++
T Consensus        44 ~d~iDLtdN-dl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L---~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   44 FDAIDLTDN-DLRKL-DNLPHLPRLHTLLLNNNRITRIDPDL---DTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cceeccccc-chhhc-ccCCCccccceEEecCCcceeeccch---hhhccccceEEecC-cchhhhhhcchhccCCccce
Confidence            344566553 22333 25677788888888887777664322   24689999999987 344444   33556777777


Q ss_pred             EeEec
Q 028049          157 LRILD  161 (214)
Q Consensus       157 L~i~~  161 (214)
                      |.+-+
T Consensus       118 Ltll~  122 (233)
T KOG1644|consen  118 LTLLG  122 (233)
T ss_pred             eeecC
Confidence            77655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.51  E-value=0.1  Score=43.57  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=46.6

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIED   87 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~   87 (214)
                      ++-+|+.|+||.++-++..+                 ++-++..++|++|.+.-..++++..+..... .+.|+.|.|..
T Consensus        36 ic~kMp~lEVLsLSvNkIss-----------------L~pl~rCtrLkElYLRkN~I~sldEL~YLkn-lpsLr~LWL~E   97 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISS-----------------LAPLQRCTRLKELYLRKNCIESLDELEYLKN-LPSLRTLWLDE   97 (388)
T ss_pred             HHHhcccceeEEeecccccc-----------------chhHHHHHHHHHHHHHhcccccHHHHHHHhc-CchhhhHhhcc
Confidence            34689999999999988732                 2223334455555544344444444433222 24577777765


Q ss_pred             CCCCCchh-----hhcccccccchhh
Q 028049           88 CNSLPLNL-----LHLANMEHLEKLF  108 (214)
Q Consensus        88 c~~l~~l~-----~~l~~l~~L~~L~  108 (214)
                      -+....-.     ..+..+++|++|+
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            33332111     2366777888775

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.08  E-value=0.79  Score=23.44  Aligned_cols=15  Identities=27%  Similarity=0.521  Sum_probs=10.2

Q ss_pred             CccCeeecCcccccc
Q 028049          191 SGLESLSLGNASNLK  205 (214)
Q Consensus       191 ~~L~~L~l~~cp~L~  205 (214)
                      ++|++|.+++|+++.
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            567777777777654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=82.98  E-value=0.38  Score=41.16  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             hhcccccccchhhccccccceeecccc-cccCCCCCccEEeeecCcCCccCc-------ccCCCCCccEEeEecC
Q 028049           96 LHLANMEHLEKLFIEESNLEDWNVDCA-GEVQKMPKLHSVLIWNCSNVKDLT-------WLVFAPNLKCLRILDC  162 (214)
Q Consensus        96 ~~l~~l~~L~~L~i~~~~l~~l~~~~~-~~~~~~~~L~~L~I~~C~~L~~lp-------~~~~l~~L~~L~i~~C  162 (214)
                      ..+...++|++|++.++-+..-..... -.-..+++|+.|.+.+| .+++=-       .-...|+|+.|.+.++
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc
Confidence            344555666666666532221100000 00134666777777776 343210       0112566666666555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=81.73  E-value=0.75  Score=40.42  Aligned_cols=17  Identities=18%  Similarity=0.323  Sum_probs=10.6

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      ++.+++|..|+++++..
T Consensus        91 l~~~~~l~~l~l~~n~i  107 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI  107 (414)
T ss_pred             cccccceeeeeccccch
Confidence            45566666666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.33
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.1
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.03
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.03
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.01
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.01
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.01
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.99
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.99
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.95
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.9
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.89
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.88
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.86
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.82
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.77
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.77
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.76
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.76
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.74
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.73
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.72
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.69
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.62
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.59
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.48
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.46
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.37
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.36
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.3
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.29
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.28
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.27
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.22
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.2
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.1
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.94
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.9
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.88
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.82
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.78
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.77
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.49
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.38
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.36
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.87

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.53  E-value=4.7e-14  Score=118.40  Aligned_cols=169  Identities=21%  Similarity=0.297  Sum_probs=89.2

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.||.+ +.++++|++|++.++.....|.                .+..+++|+.|+++-.....++..+   .-.+.|+
T Consensus        94 ~~lp~~-l~~l~~L~~L~L~~n~l~~lp~----------------~~~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~  153 (328)
T 4fcg_A           94 PQFPDQ-AFRLSHLQHMTIDAAGLMELPD----------------TMQQFAGLETLTLARNPLRALPASI---ASLNRLR  153 (328)
T ss_dssp             SSCCSC-GGGGTTCSEEEEESSCCCCCCS----------------CGGGGTTCSEEEEESCCCCCCCGGG---GGCTTCC
T ss_pred             hhcChh-hhhCCCCCEEECCCCCccchhH----------------HHhccCCCCEEECCCCccccCcHHH---hcCcCCC
Confidence            467875 7778888888888887743321                2333444555554433322222110   0112344


Q ss_pred             EEeecCCCCCCch--------------------------------hhhcccccccchhhccccccceeecccccccCCCC
Q 028049           82 ALHIEDCNSLPLN--------------------------------LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMP  129 (214)
Q Consensus        82 ~L~l~~c~~l~~l--------------------------------~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~  129 (214)
                      .|++++|.....+                                +..+..+++|++|+++++.+..++...    ..++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l----~~l~  229 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAI----HHLP  229 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGG----GGCT
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhh----ccCC
Confidence            5555444433333                                323344444444444443333332211    2355


Q ss_pred             CccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049          130 KLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       130 ~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                      +|+.|++++|.....+|. +..+++|++|++++|.....++               ..+..+++|++|++++|+.+..++
T Consensus       230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p---------------~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP---------------LDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC---------------TTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc---------------hhhhcCCCCCEEeCCCCCchhhcc
Confidence            566666666555555543 4455566666666655544443               245667888899998888777766


Q ss_pred             C
Q 028049          209 H  209 (214)
Q Consensus       209 ~  209 (214)
                      .
T Consensus       295 ~  295 (328)
T 4fcg_A          295 S  295 (328)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.51  E-value=5.7e-14  Score=117.89  Aligned_cols=177  Identities=19%  Similarity=0.164  Sum_probs=113.9

Q ss_pred             cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCC
Q 028049           11 SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNS   90 (214)
Q Consensus        11 ~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~   90 (214)
                      ...++++|++.++.....                ..++..+++|+.|+++......++.   .-.-.++|+.|+++++ .
T Consensus        79 ~~~~l~~L~L~~n~l~~l----------------p~~l~~l~~L~~L~L~~n~l~~lp~---~~~~l~~L~~L~Ls~n-~  138 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQF----------------PDQAFRLSHLQHMTIDAAGLMELPD---TMQQFAGLETLTLARN-P  138 (328)
T ss_dssp             TSTTCCEEEEESSCCSSC----------------CSCGGGGTTCSEEEEESSCCCCCCS---CGGGGTTCSEEEEESC-C
T ss_pred             cccceeEEEccCCCchhc----------------ChhhhhCCCCCEEECCCCCccchhH---HHhccCCCCEEECCCC-c
Confidence            458999999999987332                1234557889999988655543332   1123467999999987 4


Q ss_pred             CCchhhhcccccccchhhccc-cccceeecccc-----cccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049           91 LPLNLLHLANMEHLEKLFIEE-SNLEDWNVDCA-----GEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD  163 (214)
Q Consensus        91 l~~l~~~l~~l~~L~~L~i~~-~~l~~l~~~~~-----~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~  163 (214)
                      +..++..+..+++|++|++++ +.+..++....     +....+++|+.|+++++ +++.+|. +..+++|++|+++++.
T Consensus       139 l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC
T ss_pred             cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC
Confidence            456666788889999999988 55554443211     01123778888888876 6777764 6677888888887763


Q ss_pred             cccccccccc-chhhHHH--------hhhcccCCCCCccCeeecCccccccccCC
Q 028049          164 DMEEIISVEN-FEKLIEV--------SEMMGELNLFSGLESLSLGNASNLKAYVH  209 (214)
Q Consensus       164 ~l~~i~~~~~-~~~l~~~--------~~~~~~~~~f~~L~~L~l~~cp~L~~i~~  209 (214)
                       +..++..-. ...+..+        ..++..+..+++|++|++.+|+.+..++.
T Consensus       218 -l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          218 -LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             -CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             -CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence             333322100 0011100        12234567789999999999987777664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.33  E-value=4e-12  Score=101.44  Aligned_cols=24  Identities=13%  Similarity=0.202  Sum_probs=19.8

Q ss_pred             CCCCChhhhccCcccceEEccccC
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCG   24 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~   24 (214)
                      ++.||.+.+.++++|++|++.+++
T Consensus        43 l~~i~~~~~~~l~~L~~L~l~~n~   66 (239)
T 2xwt_C           43 LRTIPSHAFSNLPNISRIYVSIDV   66 (239)
T ss_dssp             CSEECTTTTTTCTTCCEEEEECCS
T ss_pred             ceEECHHHccCCCCCcEEeCCCCC
Confidence            356777778899999999999996

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.22  E-value=8.9e-11  Score=95.39  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~  155 (214)
                      .|+.|+++++ .+..++ ..+..+++|++|+++++.+..++...   ...+++|+.|+++++ +++.++.  +..+++|+
T Consensus       110 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  184 (270)
T 2o6q_A          110 NLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV---FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELK  184 (270)
T ss_dssp             SCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred             CCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH---ccCCcccceeEecCC-cCcEeChhHhccCCCcC
Confidence            4566666553 223332 23455566666666665554443211   123566666666665 5555543  34456667


Q ss_pred             EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +|+++++ .+..++.              ..+..+++|+.|++.+.|
T Consensus       185 ~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          185 TLKLDNN-QLKRVPE--------------GAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             EEECCSS-CCSCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred             EEECCCC-cCCcCCH--------------HHhccccCCCEEEecCCC
Confidence            7766665 3433322              134567788888887765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.20  E-value=9.4e-11  Score=101.68  Aligned_cols=182  Identities=15%  Similarity=0.186  Sum_probs=86.6

Q ss_pred             CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL   83 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L   83 (214)
                      ++.+.+.++++|++|++.++.....               ..+.+..+++|+.|+++-.....++.- .+. -.+.|+.|
T Consensus        79 ~~~~~~~~l~~L~~L~Ls~n~i~~i---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L~~L  141 (440)
T 3zyj_A           79 IKVNSFKHLRHLEILQLSRNHIRTI---------------EIGAFNGLANLNTLELFDNRLTTIPNG-AFV-YLSKLKEL  141 (440)
T ss_dssp             ECTTTTSSCSSCCEEECCSSCCCEE---------------CGGGGTTCSSCCEEECCSSCCSSCCTT-TSC-SCSSCCEE
T ss_pred             eCHHHhhCCCCCCEEECCCCcCCcc---------------ChhhccCCccCCEEECCCCcCCeeCHh-Hhh-ccccCcee
Confidence            3434455566666666666554211               012234455555555543333222210 000 12345666


Q ss_pred             eecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049           84 HIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus        84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      +++++ .+..++ ..+..+++|++|++.+ +.+..+....   ...+++|+.|++++| +++.+|.+..+++|++|++++
T Consensus       142 ~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          142 WLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTT
T ss_pred             eCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcch---hhcccccCeecCCCC-cCccccccCCCcccCEEECCC
Confidence            66553 233333 2345555666666665 4444443211   124666777777665 566666656666777777766


Q ss_pred             Ccccccccccc--cchhhHHH-------hhh-cccCCCCCccCeeecCccccccccCC
Q 028049          162 CDDMEEIISVE--NFEKLIEV-------SEM-MGELNLFSGLESLSLGNASNLKAYVH  209 (214)
Q Consensus       162 C~~l~~i~~~~--~~~~l~~~-------~~~-~~~~~~f~~L~~L~l~~cp~L~~i~~  209 (214)
                      + .+..+....  ....+..+       ..+ +..+..+++|+.|+++++ ++..++.
T Consensus       217 N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~  272 (440)
T 3zyj_A          217 N-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH  272 (440)
T ss_dssp             S-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred             C-ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccCh
Confidence            5 333332100  00001000       011 124556788888888775 4555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.19  E-value=7.6e-11  Score=102.59  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.++.+.+.++++|++|++.++...+.+               .+.+..+++|+.|+++-.....++.-. +. -.++|+
T Consensus        88 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~  150 (452)
T 3zyi_A           88 QMIQADTFRHLHHLEVLQLGRNSIRQIE---------------VGAFNGLASLNTLELFDNWLTVIPSGA-FE-YLSKLR  150 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEEC---------------TTTTTTCTTCCEEECCSSCCSBCCTTT-SS-SCTTCC
T ss_pred             ceECHHHcCCCCCCCEEECCCCccCCcC---------------hhhccCcccCCEEECCCCcCCccChhh-hc-ccCCCC
Confidence            4455556888999999999988763211               122444556666665543332222100 00 123456


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeE
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRI  159 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i  159 (214)
                      .|+++++ .+..++ ..+..+++|++|++.+ +.+..+....   ...+++|+.|+++++ +++.+|.+..+++|++|++
T Consensus       151 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L  225 (452)
T 3zyi_A          151 ELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEM  225 (452)
T ss_dssp             EEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEEC
T ss_pred             EEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhh---ccCCCCCCEEECCCC-cccccccccccccccEEEC
Confidence            6666554 233333 2344555566666555 4444443211   123455555555554 4455554444555555555


Q ss_pred             ecC
Q 028049          160 LDC  162 (214)
Q Consensus       160 ~~C  162 (214)
                      +++
T Consensus       226 s~N  228 (452)
T 3zyi_A          226 SGN  228 (452)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.19  E-value=9.6e-11  Score=101.62  Aligned_cols=177  Identities=14%  Similarity=0.178  Sum_probs=102.7

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..|+.+.+.++++|++|++.+++....+               .+.+..+++|+.|+++-.....++.. .+.. .+.|+
T Consensus       101 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~-l~~L~  163 (440)
T 3zyj_A          101 RTIEIGAFNGLANLNTLELFDNRLTTIP---------------NGAFVYLSKLKELWLRNNPIESIPSY-AFNR-IPSLR  163 (440)
T ss_dssp             CEECGGGGTTCSSCCEEECCSSCCSSCC---------------TTTSCSCSSCCEEECCSCCCCEECTT-TTTT-CTTCC
T ss_pred             CccChhhccCCccCCEEECCCCcCCeeC---------------HhHhhccccCceeeCCCCcccccCHH-Hhhh-CcccC
Confidence            4567677999999999999999873321               12355667788887765444333321 0111 24678


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~  158 (214)
                      .|+++++..+..++ ..+..+++|++|++.++++..++.     ...+++|+.|+++++ +++.++  .+..+++|++|+
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW  237 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence            88888877776665 356677788888887766655431     124666777777665 555553  244566666666


Q ss_pred             EecCcccccccccc--cchhhHH-------Hhhhc-ccCCCCCccCeeecCccc
Q 028049          159 ILDCDDMEEIISVE--NFEKLIE-------VSEMM-GELNLFSGLESLSLGNAS  202 (214)
Q Consensus       159 i~~C~~l~~i~~~~--~~~~l~~-------~~~~~-~~~~~f~~L~~L~l~~cp  202 (214)
                      +.++. +..+....  ....+..       +..++ ..+..+++|+.|++.+.|
T Consensus       238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence            65542 22221100  0000000       00111 234568899999999877

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=1.3e-10  Score=92.65  Aligned_cols=135  Identities=15%  Similarity=0.130  Sum_probs=72.9

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecc-cchhhhccCCcchhccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHG-SRGVENFLKFPKLQTIT   80 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~l   80 (214)
                      +.||.  +.  .+|++|++.+++..+.+               ...+..+++|+.++++... ...++.- .+. -.+.+
T Consensus        24 ~~ip~--~~--~~l~~L~l~~n~l~~i~---------------~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~-~l~~L   82 (239)
T 2xwt_C           24 QRIPS--LP--PSTQTLKLIETHLRTIP---------------SHAFSNLPNISRIYVSIDVTLQQLESH-SFY-NLSKV   82 (239)
T ss_dssp             SSCCC--CC--TTCCEEEEESCCCSEEC---------------TTTTTTCTTCCEEEEECCSSCCEECTT-TEE-SCTTC
T ss_pred             cccCC--CC--CcccEEEEeCCcceEEC---------------HHHccCCCCCcEEeCCCCCCcceeCHh-HcC-CCcCC
Confidence            45665  33  37888999888773321               1124456677777776443 3333310 001 12357


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCcc---EEeeecCcCCccCcc--cCCCCCc
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLH---SVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~---~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      +.|++++|..+..++ ..+..+++|++|++.++.+..++. .    ..+++|+   .|+++++++++.++.  +..+++|
T Consensus        83 ~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~----~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C           83 THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-L----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             CEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-C----TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             cEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-c----ccccccccccEEECCCCcchhhcCcccccchhcc
Confidence            777777766666655 345566677777776644444332 1    1234444   666666555555543  3445556


Q ss_pred             c-EEeEecC
Q 028049          155 K-CLRILDC  162 (214)
Q Consensus       155 ~-~L~i~~C  162 (214)
                      + +|+++++
T Consensus       158 ~~~L~l~~n  166 (239)
T 2xwt_C          158 TLTLKLYNN  166 (239)
T ss_dssp             EEEEECCSC
T ss_pred             eeEEEcCCC
Confidence            5 6655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.16  E-value=1.4e-10  Score=98.80  Aligned_cols=67  Identities=22%  Similarity=0.199  Sum_probs=41.8

Q ss_pred             hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccc
Q 028049           97 HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus        97 ~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      .+..+++|++|+++++.+..+....   ...+++|++|+++++ +++.+|. ...+++|++|+++++ .+..+
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~  310 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHP---FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHV  310 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGG---GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCC
T ss_pred             HHcCCCCccEEECCCCcCCCcChhH---ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceec
Confidence            3455566777777665555443211   134778888888775 6666664 446788888888877 44444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=3.2e-10  Score=92.26  Aligned_cols=155  Identities=15%  Similarity=0.173  Sum_probs=81.9

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +..+++|++|++.++...+                 +..+..+++|+.|+++......+..-. + .-.+.++.|+++++
T Consensus        59 l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~L~~n~l~~~~~~~-~-~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHD-----------------ISALKELTNLTYLILTGNQLQSLPNGV-F-DKLTNLKELVLVEN  119 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCC-----------------CGGGTTCTTCCEEECTTSCCCCCCTTT-T-TTCTTCCEEECTTS
T ss_pred             cccCCCCcEEECCCCCCCC-----------------chhhcCCCCCCEEECCCCccCccChhH-h-cCCcCCCEEECCCC
Confidence            5556666666666655411                 123445556666665433322221100 0 11235666666665


Q ss_pred             CCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCccc
Q 028049           89 NSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDM  165 (214)
Q Consensus        89 ~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l  165 (214)
                      . +..++ ..+..+++|++|+++++.+..++....   ..+++|+.|++++| +++.++.  +..+++|++|+++++. +
T Consensus       120 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l  193 (272)
T 3rfs_A          120 Q-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF---DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQ-L  193 (272)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-C
T ss_pred             c-CCccCHHHhccCCCCCEEECCCCccCccCHHHh---ccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCc-C
Confidence            3 33333 234556666777766655554432211   24667777777765 5666653  3456777777776652 3


Q ss_pred             ccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          166 EEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       166 ~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      ..++.              ..+..+++|+.|++.+++
T Consensus       194 ~~~~~--------------~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          194 KSVPD--------------GVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             SCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred             CccCH--------------HHHhCCcCCCEEEccCCC
Confidence            33322              134667889999988754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.14  E-value=2.4e-10  Score=99.81  Aligned_cols=137  Identities=16%  Similarity=0.171  Sum_probs=68.1

Q ss_pred             CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL   83 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L   83 (214)
                      ++.+.+.++++|++|++.++...+.               ..+.+..+++|+.|+++-.....++.-. +. -.++|+.|
T Consensus        47 ~~~~~~~~l~~L~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~-~l~~L~~L  109 (477)
T 2id5_A           47 LNQDEFASFPHLEELELNENIVSAV---------------EPGAFNNLFNLRTLGLRSNRLKLIPLGV-FT-GLSNLTKL  109 (477)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCSCCTTS-ST-TCTTCCEE
T ss_pred             ECHhHccCCCCCCEEECCCCccCEe---------------ChhhhhCCccCCEEECCCCcCCccCccc-cc-CCCCCCEE
Confidence            3333455556666666655544111               1123445566666666543333222100 01 12456667


Q ss_pred             eecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049           84 HIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL  160 (214)
Q Consensus        84 ~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~  160 (214)
                      +++++. +..+. ..+..+++|++|++.++.+..+....   ...+++|+.|++.+| +++.++.  +..+++|+.|++.
T Consensus       110 ~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          110 DISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---FSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             ECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTS---STTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEE
T ss_pred             ECCCCc-cccCChhHccccccCCEEECCCCccceeChhh---ccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCC
Confidence            776653 22222 34556666777776665554443211   124566777777665 5555542  4456666666666


Q ss_pred             cC
Q 028049          161 DC  162 (214)
Q Consensus       161 ~C  162 (214)
                      ++
T Consensus       185 ~n  186 (477)
T 2id5_A          185 HL  186 (477)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.14  E-value=2e-10  Score=93.74  Aligned_cols=79  Identities=14%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~  155 (214)
                      .++.|+++++. +..+. ..+..+++|++|++.++.+..++...   ...+++|+.|+++++ +++.++.  +..+++|+
T Consensus       106 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          106 RLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDT---FRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD  180 (285)
T ss_dssp             TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhH---hccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence            44555554432 22221 23344455555555544343332111   123455555555554 4444442  33455555


Q ss_pred             EEeEecC
Q 028049          156 CLRILDC  162 (214)
Q Consensus       156 ~L~i~~C  162 (214)
                      +|+++++
T Consensus       181 ~L~l~~n  187 (285)
T 1ozn_A          181 RLLLHQN  187 (285)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            5555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.14  E-value=1.6e-10  Score=100.55  Aligned_cols=137  Identities=19%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +.  ++|++|++.++...+.               ..+.+..+++|+.|+++-.....+..- .+.. .+.|+
T Consensus        67 ~~iP~~-~~--~~l~~L~L~~n~i~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~-l~~L~  126 (452)
T 3zyi_A           67 SEVPQG-IP--SNTRYLNLMENNIQMI---------------QADTFRHLHHLEVLQLGRNSIRQIEVG-AFNG-LASLN  126 (452)
T ss_dssp             SSCCSC-CC--TTCSEEECCSSCCCEE---------------CTTTTTTCTTCCEEECCSSCCCEECTT-TTTT-CTTCC
T ss_pred             CccCCC-CC--CCccEEECcCCcCceE---------------CHHHcCCCCCCCEEECCCCccCCcChh-hccC-cccCC
Confidence            456664 32  5788888888876221               122355667788877764443333210 1111 24678


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|++|+++++.+..++...   ...+++|+.|++.+|+.+..++.  +..+++|++|+
T Consensus       127 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          127 TLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA---FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             EEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             EEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhH---HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            8888775 345554 34677788888888887676664321   13578888888888888888764  55678888888


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      ++++
T Consensus       203 L~~n  206 (452)
T 3zyi_A          203 LGMC  206 (452)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.13  E-value=1.6e-10  Score=102.34  Aligned_cols=173  Identities=13%  Similarity=0.076  Sum_probs=93.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.||..+..++++|++|++++++..+.           .. .....+..+++|+.|+++-.....++.....-.-.+.++
T Consensus       323 ~~ip~~~~~~l~~L~~L~Ls~N~l~~~-----------~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          323 FLVPCSFSQHLKSLEFLDLSENLMVEE-----------YL-KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CCCCHHHHHHCTTCCEEECCSSCCCHH-----------HH-HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             ccCCHHHHhcCccccEEEccCCccccc-----------cc-cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            457776456788999999988877221           00 001224455666666665443333321000001123566


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccc--------------cccCCCCCccEEeeecCcCCccCcc
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCA--------------GEVQKMPKLHSVLIWNCSNVKDLTW  147 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~--------------~~~~~~~~L~~L~I~~C~~L~~lp~  147 (214)
                      .|+++++ .+..++..+..+++|++|+++++.+..++....              +....+++|+.|+++++ +++.+|.
T Consensus       391 ~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~  468 (549)
T 2z81_A          391 SLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD  468 (549)
T ss_dssp             EEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             EEECCCC-CCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC
Confidence            7777665 444444344555666666666644443321100              00023566666666665 5666665


Q ss_pred             cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccc
Q 028049          148 LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASN  203 (214)
Q Consensus       148 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~  203 (214)
                      ...+++|++|+++++ .+..++.              ..+..+++|+.|++.++|-
T Consensus       469 ~~~l~~L~~L~Ls~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          469 ASLFPVLLVMKISRN-QLKSVPD--------------GIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCCT--------------TGGGGCTTCCEEECCSSCB
T ss_pred             cccCccCCEEecCCC-ccCCcCH--------------HHHhcCcccCEEEecCCCc
Confidence            455666777776664 3443322              1355678899999988774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.13  E-value=3.4e-10  Score=93.19  Aligned_cols=126  Identities=16%  Similarity=0.247  Sum_probs=69.9

Q ss_pred             ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049           48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK  127 (214)
Q Consensus        48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~  127 (214)
                      +..+++|+.|+++......++.+..    .++++.|+++++ .+..+ ..+..+++|+.|+++++.+..+. .    ...
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~L~~n-~i~~~-~~l~~l~~L~~L~l~~n~l~~~~-~----l~~  154 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKD----LKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNKITDIT-V----LSR  154 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTT----CTTCCEEECTTS-CCCCC-GGGGGCTTCCEEECCSSCCCCCG-G----GGG
T ss_pred             cccCCCCCEEECCCCcCCCChhhcc----CCCCCEEECCCC-cCCCC-hhhcCCCCCCEEEccCCcCCcch-h----hcc
Confidence            4455666666665444433333222    235666777665 33333 24555666777776665554431 1    124


Q ss_pred             CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          128 MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++|+.|++++| +++.++.+..+++|++|+++++ .+..+.                .+..+++|+.|++.+++
T Consensus       155 l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L~~N-~i~~l~----------------~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          155 LTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDLR----------------ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBCG----------------GGTTCTTCSEEEEEEEE
T ss_pred             CCCCCEEEccCC-ccccchhhcCCCccCEEECCCC-cCCCCh----------------hhccCCCCCEEECcCCc
Confidence            667777777765 5666655566677777777665 333221                23456777777777653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.12  E-value=1.1e-10  Score=90.59  Aligned_cols=151  Identities=16%  Similarity=0.176  Sum_probs=106.6

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      ..+++|++|++.++.....                 ..+..+++|+.|+++-.....++.+..    .+.++.|+++++.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-----------------~~l~~l~~L~~L~l~~n~~~~~~~l~~----l~~L~~L~l~~n~   99 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-----------------TGIEYAHNIKDLTINNIHATNYNPISG----LSNLERLRIMGKD   99 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-----------------TTGGGCTTCSEEEEESCCCSCCGGGTT----CTTCCEEEEECTT
T ss_pred             hhcCCccEEeccCCCccCh-----------------HHHhcCCCCCEEEccCCCCCcchhhhc----CCCCCEEEeECCc
Confidence            5788999999999987321                 135667888999887555444443322    3578999999864


Q ss_pred             CCCc-hhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049           90 SLPL-NLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus        90 ~l~~-l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i  168 (214)
                       +.. .+..+..+++|++|+++++.+.......   ...+++|+.|++++|..+..+|.+..+++|++|++++|. +..+
T Consensus       100 -l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~  174 (197)
T 4ezg_A          100 -VTSDKIPNLSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDY  174 (197)
T ss_dssp             -CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCC
T ss_pred             -cCcccChhhcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcCh
Confidence             333 2245778889999999986665422111   135899999999999778888887889999999998873 3332


Q ss_pred             cccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          169 ISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       169 ~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      .                .+..+++|+.|++.+-+
T Consensus       175 ~----------------~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          175 R----------------GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             T----------------TGGGCSSCCEEEECBC-
T ss_pred             H----------------HhccCCCCCEEEeeCcc
Confidence            1                34467889999987643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.12  E-value=5.8e-10  Score=90.52  Aligned_cols=168  Identities=19%  Similarity=0.242  Sum_probs=111.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +.  ++|++|++.+++....               ....+..+++|+.|+++-.....++.-. + .-.+.++
T Consensus        29 ~~ip~~-~~--~~l~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~i~~~~-~-~~l~~L~   88 (270)
T 2o6q_A           29 TAIPSN-IP--ADTKKLDLQSNKLSSL---------------PSKAFHRLTKLRLLYLNDNKLQTLPAGI-F-KELKNLE   88 (270)
T ss_dssp             SSCCSC-CC--TTCSEEECCSSCCSCC---------------CTTSSSSCTTCCEEECCSSCCSCCCTTT-T-SSCTTCC
T ss_pred             CccCCC-CC--CCCCEEECcCCCCCee---------------CHHHhcCCCCCCEEECCCCccCeeChhh-h-cCCCCCC
Confidence            456664 32  5788999988877322               1123566788888888654443333110 1 1135789


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|++|++.++.+..+....   ...+++|+.|+++++ +++.+|.  +..+++|++|+
T Consensus        89 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           89 TLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV---FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHH---hCcCcCCCEEECCCC-cCCccCHhHccCCcccceeE
Confidence            9999876 345554 45677889999999987776664322   135899999999987 7888874  56789999999


Q ss_pred             EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCCC
Q 028049          159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVHR  210 (214)
Q Consensus       159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~  210 (214)
                      ++++ .+..+..              ..+..+++|++|+++++ +++.++..
T Consensus       164 L~~n-~l~~~~~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~  199 (270)
T 2o6q_A          164 LYNN-QLKRVPE--------------GAFDKLTELKTLKLDNN-QLKRVPEG  199 (270)
T ss_dssp             CCSS-CCSCCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred             ecCC-cCcEeCh--------------hHhccCCCcCEEECCCC-cCCcCCHH
Confidence            9887 3443322              13556789999999887 46665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.12  E-value=4.4e-10  Score=93.21  Aligned_cols=125  Identities=18%  Similarity=0.216  Sum_probs=74.3

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +..+++|++|++++|...+.                 ..+..+++|+.|+++......++.+..    .+.++.|+++++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~----l~~L~~L~l~~n  117 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDL-----------------APLKNLTKITELELSGNPLKNVSAIAG----LQSIKTLDLTST  117 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-----------------GGGTTCCSCCEEECCSCCCSCCGGGTT----CTTCCEEECTTS
T ss_pred             hhccCCCCEEEccCCcCCCC-----------------hhHccCCCCCEEEccCCcCCCchhhcC----CCCCCEEECCCC
Confidence            66677777777777765221                 114556667777766444444433222    245677777765


Q ss_pred             CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC  162 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C  162 (214)
                      . +..++ .+..+++|++|+++++.+..+..     ...+++|+.|++++| +++.++.+..+++|+.|+++++
T Consensus       118 ~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          118 Q-ITDVT-PLAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN  183 (308)
T ss_dssp             C-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             C-CCCch-hhcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCC
Confidence            3 34442 35666777777777655544422     124677777777776 6666665666777777777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.12  E-value=3.6e-10  Score=98.65  Aligned_cols=154  Identities=16%  Similarity=0.167  Sum_probs=78.3

Q ss_pred             CCChhhhccCcccceEEccccCcccccccc-cc-cc-----cchhh--HhhhhhccCCccCceeeEEecccchhhhccCC
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVE-EG-KV-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLKF   73 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~-~~-~~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~   73 (214)
                      .++.+.+.++++|++|++.+++....+... .. ..     +....  ......+..+++|+.|++.......+..- .+
T Consensus        70 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~  148 (477)
T 2id5_A           70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-AF  148 (477)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-SS
T ss_pred             EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-hc
Confidence            344445777888888888877664332110 00 00     00000  00011234455666666553332222100 01


Q ss_pred             cchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCC
Q 028049           74 PKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFA  151 (214)
Q Consensus        74 ~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l  151 (214)
                      .. .+.|+.|+++++ .+..++ ..+..+++|+.|++.++.+..+....   ...+++|+.|++++|+.+..+|. ....
T Consensus       149 ~~-l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~  223 (477)
T 2id5_A          149 SG-LNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---FKRLYRLKVLEISHWPYLDTMTPNCLYG  223 (477)
T ss_dssp             TT-CTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---SCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred             cC-CCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhh---cccCcccceeeCCCCccccccCcccccC
Confidence            11 235677777665 334443 34566677777777765555443211   13467788888887777776653 3344


Q ss_pred             CCccEEeEecC
Q 028049          152 PNLKCLRILDC  162 (214)
Q Consensus       152 ~~L~~L~i~~C  162 (214)
                      .+|++|++++|
T Consensus       224 ~~L~~L~l~~n  234 (477)
T 2id5_A          224 LNLTSLSITHC  234 (477)
T ss_dssp             CCCSEEEEESS
T ss_pred             ccccEEECcCC
Confidence            57777777765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.11  E-value=2.6e-10  Score=96.18  Aligned_cols=184  Identities=14%  Similarity=0.120  Sum_probs=107.8

Q ss_pred             CCCCChhhhccCcccceEEccccCcccc-ccc-cccc-c------cchhhHh--hhhhccCCccCceeeEEecccchhhh
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHR-SIV-EEGK-V------LSADAES--LMKEIHCLEQLNLITLSLHGSRGVEN   69 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~-~~~-~~~~-~------~~~~~~~--~l~eL~~L~~L~~L~i~~~~~~~l~~   69 (214)
                      +++||.+++++|++|++|++++++..+. +.+ +... .      .....-.  ..+.+..+++|+.+++.-.....++.
T Consensus        42 i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           42 LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence            4678888889999999999999976321 110 0100 0      0000000  11235667788888887655444433


Q ss_pred             ccCCcchhccccEEeecCCCCCCchh-hhccccc-ccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc
Q 028049           70 FLKFPKLQTITQALHIEDCNSLPLNL-LHLANME-HLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW  147 (214)
Q Consensus        70 l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~-~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~  147 (214)
                      ......  ..+..+++.++..+..++ ..+..+. .++.|+++++.++.++...    ....+|+++.+.+++.++.+|.
T Consensus       122 ~~~~~~--~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----f~~~~L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          122 VHKIHS--LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----FNGTQLDELNLSDNNNLEELPN  195 (350)
T ss_dssp             CTTCCB--SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----STTEEEEEEECTTCTTCCCCCT
T ss_pred             hhhccc--chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----ccccchhHHhhccCCcccCCCH
Confidence            221111  235567777777776665 3344443 5777888777777765322    1345788888888888888874


Q ss_pred             --cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049          148 --LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       148 --~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                        ...+++|++|++++. +++.++.                 ..|.+|+.|.+.++.+|+.++
T Consensus       196 ~~f~~l~~L~~LdLs~N-~l~~lp~-----------------~~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          196 DVFHGASGPVILDISRT-RIHSLPS-----------------YGLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             TTTTTEECCSEEECTTS-CCCCCCS-----------------SSCTTCCEEECTTCTTCCCCC
T ss_pred             HHhccCcccchhhcCCC-CcCccCh-----------------hhhccchHhhhccCCCcCcCC
Confidence              456788888888775 4555532                 224455555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.10  E-value=2.6e-10  Score=94.83  Aligned_cols=140  Identities=13%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCc-------
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP-------   74 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~-------   74 (214)
                      ..++.+.+.++++|++|++.+|...+.+                 .+..+++|+.|+++......++......       
T Consensus        47 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n  109 (317)
T 3o53_A           47 SQISAADLAPFTKLELLNLSSNVLYETL-----------------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (317)
T ss_dssp             CCCCHHHHTTCTTCCEEECTTSCCEEEE-----------------EETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             CcCCHHHhhCCCcCCEEECCCCcCCcch-----------------hhhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence            3455445777777777777777652210                 1344455555554432222211110000       


Q ss_pred             -------chhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc
Q 028049           75 -------KLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT  146 (214)
Q Consensus        75 -------~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp  146 (214)
                             ...+.++.|+++++ .+..++ ..+..+++|++|+++++.+..+.....  ...+++|+.|+++++ +++.++
T Consensus       110 ~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~  185 (317)
T 3o53_A          110 NISRVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYN-FIYDVK  185 (317)
T ss_dssp             CCSEEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTCCEEECTTS-CCCEEE
T ss_pred             ccCCcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHH--hhccCcCCEEECCCC-cCcccc
Confidence                   00134566666554 233332 244556777777777765555432211  123677788888776 566666


Q ss_pred             ccCCCCCccEEeEecC
Q 028049          147 WLVFAPNLKCLRILDC  162 (214)
Q Consensus       147 ~~~~l~~L~~L~i~~C  162 (214)
                      ....+++|++|+++++
T Consensus       186 ~~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          186 GQVVFAKLKTLDLSSN  201 (317)
T ss_dssp             CCCCCTTCCEEECCSS
T ss_pred             cccccccCCEEECCCC
Confidence            5555777788777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.09  E-value=6.3e-10  Score=90.50  Aligned_cols=158  Identities=14%  Similarity=0.161  Sum_probs=111.8

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      ...+++|+.|++.++....                 +..+..+++|+.|+++-.....++.+..    .+.++.|+++++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~~L~L~~n   95 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-----------------VQGIQYLPNVRYLALGGNKLHDISALKE----LTNLTYLILTGN   95 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-----------------CTTGGGCTTCCEEECTTSCCCCCGGGTT----CTTCCEEECTTS
T ss_pred             cccccceeeeeeCCCCccc-----------------ccccccCCCCcEEECCCCCCCCchhhcC----CCCCCEEECCCC
Confidence            4578899999999998732                 2235667888888877555444443322    247899999987


Q ss_pred             CCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCccc
Q 028049           89 NSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDM  165 (214)
Q Consensus        89 ~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l  165 (214)
                       .+..++ ..+..+++|++|++.++.+..++...   ...+++|+.|++++| +++.++.  +..+++|++|++++| ++
T Consensus        96 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l  169 (272)
T 3rfs_A           96 -QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QL  169 (272)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             -ccCccChhHhcCCcCCCEEECCCCcCCccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-Cc
Confidence             455554 34678899999999997777664322   135889999999998 7888875  567899999999998 34


Q ss_pred             ccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049          166 EEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       166 ~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                      ..++.              ..+..+++|++|++.++. +..+.
T Consensus       170 ~~~~~--------------~~~~~l~~L~~L~L~~N~-l~~~~  197 (272)
T 3rfs_A          170 QSLPE--------------GVFDKLTQLKDLRLYQNQ-LKSVP  197 (272)
T ss_dssp             CCCCT--------------TTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             CccCH--------------HHhcCCccCCEEECCCCc-CCccC
Confidence            44432              134667889999988763 44444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.08  E-value=4.8e-10  Score=93.02  Aligned_cols=130  Identities=16%  Similarity=0.213  Sum_probs=83.8

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..+|.  +.++++|++|++++++..+.                 ..+..+++|+.|+++......++.+..    .++++
T Consensus        76 ~~~~~--~~~l~~L~~L~L~~n~l~~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~l~~----l~~L~  132 (308)
T 1h6u_A           76 TDLAP--LKNLTKITELELSGNPLKNV-----------------SAIAGLQSIKTLDLTSTQITDVTPLAG----LSNLQ  132 (308)
T ss_dssp             CCCGG--GTTCCSCCEEECCSCCCSCC-----------------GGGTTCTTCCEEECTTSCCCCCGGGTT----CTTCC
T ss_pred             CCChh--HccCCCCCEEEccCCcCCCc-----------------hhhcCCCCCCEEECCCCCCCCchhhcC----CCCCC
Confidence            45565  88999999999999987321                 235566777777776544444433221    24677


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      .|+++++ .+..++ .+..+++|+.|+++++.+..+..     ...+++|+.|+++++ +++.++.+..+++|++|++++
T Consensus       133 ~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          133 VLYLDLN-QITNIS-PLAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKN  204 (308)
T ss_dssp             EEECCSS-CCCCCG-GGGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTT
T ss_pred             EEECCCC-ccCcCc-cccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccC
Confidence            7888775 334442 35666777788777755554432     134677777777775 666666566677777777777


Q ss_pred             C
Q 028049          162 C  162 (214)
Q Consensus       162 C  162 (214)
                      +
T Consensus       205 N  205 (308)
T 1h6u_A          205 N  205 (308)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.07  E-value=5.9e-10  Score=100.89  Aligned_cols=153  Identities=15%  Similarity=0.215  Sum_probs=94.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..+|.  +..+++|++|++.+|+..+.                 ..+..+++|+.|+++-..+..++.+..    .++|+
T Consensus        56 ~~l~~--l~~l~~L~~L~Ls~N~l~~~-----------------~~l~~l~~L~~L~Ls~N~l~~l~~l~~----l~~L~  112 (605)
T 1m9s_A           56 KSVQG--IQYLPNVTKLFLNGNKLTDI-----------------KPLTNLKNLGWLFLDENKIKDLSSLKD----LKKLK  112 (605)
T ss_dssp             CCCTT--GGGCTTCCEEECTTSCCCCC-----------------GGGGGCTTCCEEECCSSCCCCCTTSTT----CTTCC
T ss_pred             CCChH--HccCCCCCEEEeeCCCCCCC-----------------hhhccCCCCCEEECcCCCCCCChhhcc----CCCCC
Confidence            34553  67777777777777766321                 114556677777766554444433322    24677


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      .|+|+++. +..+ ..+..+++|+.|+++++.+..+. .    ...+++|+.|++++| ++..++.+..+++|+.|++++
T Consensus       113 ~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~l~-~----l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          113 SLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKITDIT-V----LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSK  184 (605)
T ss_dssp             EEECTTSC-CCCC-GGGGGCTTCSEEECCSSCCCCCG-G----GGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCS
T ss_pred             EEEecCCC-CCCC-ccccCCCccCEEECCCCccCCch-h----hcccCCCCEEECcCC-cCCCchhhccCCCCCEEECcC
Confidence            78887753 3444 24666777888887775555541 1    135778888888776 666665566778888888877


Q ss_pred             CcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          162 CDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       162 C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      | .+..+.                .+..+++|+.|++.+++
T Consensus       185 N-~i~~l~----------------~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          185 N-HISDLR----------------ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             S-CCCBCG----------------GGTTCTTCSEEECCSEE
T ss_pred             C-CCCCCh----------------HHccCCCCCEEEccCCc
Confidence            6 333321                33456777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.07  E-value=5.6e-10  Score=93.35  Aligned_cols=77  Identities=22%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .++.|++++|. +..++ .+..+++|++|++.++.+..+..     ...+++|+.|++++| +++.++.+..+++|++|+
T Consensus       222 ~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~  293 (347)
T 4fmz_A          222 RLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTNQISDINA-----VKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLF  293 (347)
T ss_dssp             TCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEE
T ss_pred             cCCEEEccCCc-cCCCc-chhcCCCCCEEECCCCccCCChh-----HhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEE
Confidence            45666666652 23332 24555666666666644443311     124667777777766 566666556667777777


Q ss_pred             EecCc
Q 028049          159 ILDCD  163 (214)
Q Consensus       159 i~~C~  163 (214)
                      +++|.
T Consensus       294 L~~n~  298 (347)
T 4fmz_A          294 LNNNQ  298 (347)
T ss_dssp             CCSSC
T ss_pred             CcCCc
Confidence            77763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.05  E-value=1.1e-10  Score=97.28  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             cccEEeecCCCCCCc--hhhhccccc-ccchhhcccc--ccc--eeecccccccCCCCCccEEeeecCcCCcc--CcccC
Q 028049           79 ITQALHIEDCNSLPL--NLLHLANME-HLEKLFIEES--NLE--DWNVDCAGEVQKMPKLHSVLIWNCSNVKD--LTWLV  149 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~--l~~~l~~l~-~L~~L~i~~~--~l~--~l~~~~~~~~~~~~~L~~L~I~~C~~L~~--lp~~~  149 (214)
                      +++.|++++|..+..  ++..+..++ +|++|++.++  .+.  .++..    ...+++|+.|++++|..+..  ++.+.
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL----VRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH----HHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH----HhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            455666665544443  222344455 5666666552  222  11100    12366777777777654443  22345


Q ss_pred             CCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049          150 FAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA  201 (214)
Q Consensus       150 ~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c  201 (214)
                      .+++|++|++++|..+....              -..+..+++|+.|++.+|
T Consensus       245 ~l~~L~~L~l~~~~~~~~~~--------------~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          245 QLNYLQHLSLSRCYDIIPET--------------LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GCTTCCEEECTTCTTCCGGG--------------GGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCEeeCCCCCCCCHHH--------------HHHHhcCCCCCEEeccCc
Confidence            56777777777775221110              013345778888888777

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.05  E-value=5.4e-10  Score=100.65  Aligned_cols=63  Identities=24%  Similarity=0.180  Sum_probs=39.6

Q ss_pred             hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049           97 HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD  163 (214)
Q Consensus        97 ~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~  163 (214)
                      .+..+++|+.|+++++.+..+.....   ..+++|+.|+++++ ++..+|. ...+|+|+.|++++|.
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGG---TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred             hhccCCCCCEEECCCCccCCCCHHHh---cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence            34556667777776655555432211   24777888888775 6666664 4457788888887763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.05  E-value=5e-10  Score=91.00  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=19.1

Q ss_pred             CCCChhhhccCcccceEEccccCc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      +.+|...+.++++|++|++.++..
T Consensus        41 ~~~~~~~~~~l~~L~~L~l~~n~l   64 (276)
T 2z62_A           41 RHLGSYSFFSFPELQVLDLSRCEI   64 (276)
T ss_dssp             CEECTTTTTTCTTCSEEECTTCCC
T ss_pred             cccCHhHhccccCCcEEECCCCcC
Confidence            455665688899999999999876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.05  E-value=6.6e-10  Score=94.65  Aligned_cols=101  Identities=17%  Similarity=0.209  Sum_probs=74.3

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK  155 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~  155 (214)
                      +.++.|+++++. +..+. ..+..+++|++|++.++.+..++...    ..+++|+.|++++| +++.+|. +..+++|+
T Consensus       248 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          248 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLE  321 (390)
T ss_dssp             TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred             CCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCccc----CCCCCCCEEECCCC-cceecCccccccCcCC
Confidence            457777777753 33332 45778899999999998787765332    35899999999998 7888874 56689999


Q ss_pred             EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +|+++++. +..+                 .+..+++|+.|++.+.|
T Consensus       322 ~L~L~~N~-i~~~-----------------~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          322 NLYLDHNS-IVTL-----------------KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EEECCSSC-CCCC-----------------CCCTTCCCSEEECCSSC
T ss_pred             EEECCCCc-ccee-----------------CchhhccCCEEEcCCCC
Confidence            99999874 3322                 34567888888888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.03  E-value=1.6e-09  Score=87.06  Aligned_cols=161  Identities=16%  Similarity=0.225  Sum_probs=100.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.||.+ +.  ++|++|++.+++..+.+               ...+..+++|+.|+++-.....+..- .+. -.+.|+
T Consensus        27 ~~~p~~-~~--~~l~~L~L~~n~l~~~~---------------~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L~   86 (251)
T 3m19_A           27 DSVPSG-IP--ADTEKLDLQSTGLATLS---------------DATFRGLTKLTWLNLDYNQLQTLSAG-VFD-DLTELG   86 (251)
T ss_dssp             SSCCSC-CC--TTCCEEECTTSCCCCCC---------------TTTTTTCTTCCEEECTTSCCCCCCTT-TTT-TCTTCC
T ss_pred             cccCCC-CC--CCCCEEEccCCCcCccC---------------HhHhcCcccCCEEECCCCcCCccCHh-Hhc-cCCcCC
Confidence            456654 33  57888888888763221               12345667777777764433322210 011 124688


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|++|+++++.+..++....   ..+++|+.|+++++ +++.++.  +..+++|++|+
T Consensus        87 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  161 (251)
T 3m19_A           87 TLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLS  161 (251)
T ss_dssp             EEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEE
Confidence            8888775 344444 446677888888888877766543221   34788888888876 7777764  55678888888


Q ss_pred             EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      ++++ .+..++.              ..+..+++|+.|++.+.+
T Consensus       162 L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          162 LSTN-QLQSVPH--------------GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCSS-CCSCCCT--------------TTTTTCTTCCEEECCSCC
T ss_pred             CCCC-cCCccCH--------------HHHhCCCCCCEEEeeCCc
Confidence            8876 3443332              145567888888888765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.03  E-value=1.3e-09  Score=89.81  Aligned_cols=21  Identities=10%  Similarity=0.283  Sum_probs=12.1

Q ss_pred             CCCChhhhccCcccceEEccccCc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      +.||.+ +.  +++++|++.++..
T Consensus        23 ~~ip~~-~~--~~l~~L~L~~N~l   43 (290)
T 1p9a_G           23 TALPPD-LP--KDTTILHLSENLL   43 (290)
T ss_dssp             SSCCSC-CC--TTCCEEECTTSCC
T ss_pred             CcCCCC-CC--CCCCEEEcCCCcC
Confidence            445554 22  4666677766665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.02  E-value=4.6e-10  Score=94.44  Aligned_cols=156  Identities=16%  Similarity=0.168  Sum_probs=70.4

Q ss_pred             CCCChhhhccCcccceEEccccCcccccc-cccc-cc-----cchhh--HhhhhhccCCccCceeeEEecccchhhhccC
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSI-VEEG-KV-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLK   72 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~-~~~~-~~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~   72 (214)
                      +.+|.+.+.++++|++|++.+++..+.+. .+.. ..     +....  ....+.+..+++|+.|+++......++....
T Consensus        65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  144 (353)
T 2z80_A           65 TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL  144 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCS
T ss_pred             cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhh
Confidence            45666567888888888888886632210 0000 00     00000  0000113344455555544322222221000


Q ss_pred             CcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cC
Q 028049           73 FPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LV  149 (214)
Q Consensus        73 ~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~  149 (214)
                      +. -.++++.|+++++..+..++ ..+..+++|++|++.++.+..+....   ...+++|++|+++++ ++..+|.  ..
T Consensus       145 ~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n-~l~~~~~~~~~  219 (353)
T 2z80_A          145 FS-HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS---LKSIQNVSHLILHMK-QHILLLEIFVD  219 (353)
T ss_dssp             CT-TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECS-CSTTHHHHHHH
T ss_pred             hc-cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH---HhccccCCeecCCCC-ccccchhhhhh
Confidence            11 12345666666654444433 33455566666666554444332111   123556666666654 3444442  22


Q ss_pred             CCCCccEEeEecC
Q 028049          150 FAPNLKCLRILDC  162 (214)
Q Consensus       150 ~l~~L~~L~i~~C  162 (214)
                      .+++|++|+++++
T Consensus       220 ~~~~L~~L~L~~n  232 (353)
T 2z80_A          220 VTSSVECLELRDT  232 (353)
T ss_dssp             HTTTEEEEEEESC
T ss_pred             hcccccEEECCCC
Confidence            3566666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.01  E-value=8.3e-10  Score=97.30  Aligned_cols=181  Identities=12%  Similarity=0.071  Sum_probs=96.1

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCc-------
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFP-------   74 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~-------   74 (214)
                      ..+|++.++++++|++|++++|...+.+                 .+..+++|+.|+++......++......       
T Consensus        47 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----------------~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N  109 (487)
T 3oja_A           47 SQISAADLAPFTKLELLNLSSNVLYETL-----------------DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN  109 (487)
T ss_dssp             CCCCGGGGTTCTTCCEEECTTSCCEEEE-----------------ECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred             CCCCHHHHhCCCCCCEEEeeCCCCCCCc-----------------ccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence            3455445777777777777777662210                 1444555555555433222221110000       


Q ss_pred             -------chhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc
Q 028049           75 -------KLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT  146 (214)
Q Consensus        75 -------~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp  146 (214)
                             ...+.++.|+++++. +..+. ..+..+++|+.|+++++.+..+.....  ...+++|+.|+++++ ++..++
T Consensus       110 ~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~~l~~L~~L~Ls~N-~l~~~~  185 (487)
T 3oja_A          110 NISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL--AASSDTLEHLNLQYN-FIYDVK  185 (487)
T ss_dssp             CCCCEEECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG--GGGTTTCCEEECTTS-CCCEEE
T ss_pred             cCCCCCccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcChHHH--hhhCCcccEEecCCC-cccccc
Confidence                   001346667776653 33332 345667788888888766665432211  124678888888876 577776


Q ss_pred             ccCCCCCccEEeEecCccccccccccc-chhhHH-------HhhhcccCCCCCccCeeecCccccc
Q 028049          147 WLVFAPNLKCLRILDCDDMEEIISVEN-FEKLIE-------VSEMMGELNLFSGLESLSLGNASNL  204 (214)
Q Consensus       147 ~~~~l~~L~~L~i~~C~~l~~i~~~~~-~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp~L  204 (214)
                      ....+++|++|+++++. +..++..-. ...+..       +..++..+..+++|+.|++.+++-.
T Consensus       186 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            65668888888887763 444432100 000110       0122334556677777777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.01  E-value=1.2e-09  Score=89.92  Aligned_cols=145  Identities=12%  Similarity=0.071  Sum_probs=65.7

Q ss_pred             hccCcccceEEccccCcccccccccccc----cchhh--HhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA   82 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~   82 (214)
                      ++++++|+++++.+++....|.++....    +....  ......+..+++|+.|+++-.....++..    ...+.++.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCcCCE
Confidence            5667777777777766655443332110    11100  00112344555566655543333222221    11234556


Q ss_pred             EeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049           83 LHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL  160 (214)
Q Consensus        83 L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~  160 (214)
                      |++++. .+..++..+..+++|++|+++++.+..++...   ...+++|+.|+++++ +++.+|.  +..+++|+.|+++
T Consensus        82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred             EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECC
Confidence            666553 33344333444555566665554444443211   123455555555553 4455543  2344555555554


Q ss_pred             cC
Q 028049          161 DC  162 (214)
Q Consensus       161 ~C  162 (214)
                      ++
T Consensus       157 ~N  158 (290)
T 1p9a_G          157 NN  158 (290)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.01  E-value=1.6e-09  Score=90.14  Aligned_cols=181  Identities=17%  Similarity=0.209  Sum_probs=95.3

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.+|.+.++++++|++|++.+++..+.               ..+.+..+++|+.|+++-.....++.-     ..+.++
T Consensus        65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~  124 (330)
T 1xku_A           65 TEIKDGDFKNLKNLHTLILINNKISKI---------------SPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQ  124 (330)
T ss_dssp             CCBCTTTTTTCTTCCEEECCSSCCCCB---------------CTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCC
T ss_pred             CEeChhhhccCCCCCEEECCCCcCCee---------------CHHHhcCCCCCCEEECCCCcCCccChh-----hccccc
Confidence            456665677888888888888776221               122355667788887764443333221     125678


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRIL  160 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~  160 (214)
                      .|+++++. +..++ ..+..+++|+.|++.++.+...... ......+++|+.|.++++ +++.+|.. ..++|++|+++
T Consensus       125 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~L~~L~l~  200 (330)
T 1xku_A          125 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIE-NGAFQGMKKLSYIRIADT-NITTIPQG-LPPSLTELHLD  200 (330)
T ss_dssp             EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBC-TTGGGGCTTCCEEECCSS-CCCSCCSS-CCTTCSEEECT
T ss_pred             EEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcC-hhhccCCCCcCEEECCCC-ccccCCcc-ccccCCEEECC
Confidence            88887753 34443 3466677778877776444321110 011124666777777665 45555531 23566666666


Q ss_pred             cCcccccccccc--cchhhHHH-------hhhc-ccCCCCCccCeeecCccccccccC
Q 028049          161 DCDDMEEIISVE--NFEKLIEV-------SEMM-GELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       161 ~C~~l~~i~~~~--~~~~l~~~-------~~~~-~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                      ++. +..+....  ....+..+       ..++ ..+..+++|++|+++++ ++..++
T Consensus       201 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp  256 (330)
T 1xku_A          201 GNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVP  256 (330)
T ss_dssp             TSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCC
T ss_pred             CCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCC
Confidence            553 22221100  00000000       0111 13456788999988887 355544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.00  E-value=3e-09  Score=88.55  Aligned_cols=142  Identities=11%  Similarity=0.157  Sum_probs=92.8

Q ss_pred             CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA   82 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~   82 (214)
                      .+|.+++.++++|++|++.++.....             ......+..+++|+.++++......++..     ..+.++.
T Consensus       135 ~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-----~~~~L~~  196 (330)
T 1xku_A          135 KVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGMKKLSYIRIADTNITTIPQG-----LPPSLTE  196 (330)
T ss_dssp             BBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGCTTCCEEECCSSCCCSCCSS-----CCTTCSE
T ss_pred             ccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCCCCcCEEECCCCccccCCcc-----ccccCCE
Confidence            44555566666677776666655211             01123355667777777764444333321     1257889


Q ss_pred             EeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEe
Q 028049           83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRIL  160 (214)
Q Consensus        83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~  160 (214)
                      |+++++. +..+. ..+..+++|++|+++++.+..+....   ...+++|++|+++++ ++..+|. +..+++|++|+++
T Consensus       197 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~  271 (330)
T 1xku_A          197 LHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGS---LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLH  271 (330)
T ss_dssp             EECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTT---GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECC
T ss_pred             EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhh---ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECC
Confidence            9998864 44443 56778889999999987777654322   135889999999987 7888874 7778999999998


Q ss_pred             cCcccccc
Q 028049          161 DCDDMEEI  168 (214)
Q Consensus       161 ~C~~l~~i  168 (214)
                      ++. +..+
T Consensus       272 ~N~-i~~~  278 (330)
T 1xku_A          272 NNN-ISAI  278 (330)
T ss_dssp             SSC-CCCC
T ss_pred             CCc-CCcc
Confidence            863 4444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=1.2e-09  Score=98.28  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             ccccEEeecCCCCCCch-hhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049           78 TITQALHIEDCNSLPLN-LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK  155 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l-~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~  155 (214)
                      +.|+.|+++++. +..+ +..+..+++|+.|+++++.+..++...    ..+++|+.|++++| ++..+|. +..+++|+
T Consensus       254 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          254 PGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYG----QPIPTLKVLDLSHN-HLLHVERNQPQFDRLE  327 (597)
T ss_dssp             TTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSS----SCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred             CCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCccc----ccCCCCcEEECCCC-CCCccCcccccCCCCC
Confidence            456777777753 3333 256778899999999998887765433    35899999999997 6778874 66789999


Q ss_pred             EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +|+++++. +..+                 .+..|++|+.|++.+.|
T Consensus       328 ~L~L~~N~-l~~~-----------------~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          328 NLYLDHNS-IVTL-----------------KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             EEECCSSC-CCCC-----------------CCCTTCCCSEEECCSSC
T ss_pred             EEECCCCC-CCCc-----------------ChhhcCCCCEEEeeCCC
Confidence            99999975 3222                 34567889999888765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.99  E-value=2.2e-09  Score=89.68  Aligned_cols=147  Identities=16%  Similarity=0.161  Sum_probs=66.5

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccc-cc-----cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEG-KV-----LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPK   75 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~-~~-----~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~   75 (214)
                      ..+|.  +..+++|++|++.+|+..+.+. ... ..     +....-..+..+..+++|+.|+++......++.+..   
T Consensus        57 ~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---  130 (347)
T 4fmz_A           57 ASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLAN---  130 (347)
T ss_dssp             CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGGGTT---
T ss_pred             ccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchhhcc---
Confidence            44554  7888888888888887643221 000 00     000000011223344444444443222222222111   


Q ss_pred             hhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCcc
Q 028049           76 LQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLK  155 (214)
Q Consensus        76 l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~  155 (214)
                       .+.++.|++++|.....++ .+..+++|++|++.++.+..+..     ...+++|+.|++++| +++.++.+..+++|+
T Consensus       131 -l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~  202 (347)
T 4fmz_A          131 -LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYN-QIEDISPLASLTSLH  202 (347)
T ss_dssp             -CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTS-CCCCCGGGGGCTTCC
T ss_pred             -CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCC-cccccccccCCCccc
Confidence             1245555555554443332 24445555555555533332211     123556666666655 445554444555566


Q ss_pred             EEeEecC
Q 028049          156 CLRILDC  162 (214)
Q Consensus       156 ~L~i~~C  162 (214)
                      .+++.++
T Consensus       203 ~L~l~~n  209 (347)
T 4fmz_A          203 YFTAYVN  209 (347)
T ss_dssp             EEECCSS
T ss_pred             eeecccC
Confidence            6655554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.97  E-value=1.7e-09  Score=88.27  Aligned_cols=179  Identities=16%  Similarity=0.186  Sum_probs=107.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccc-cccccc----c--ccchh---hHhhhhhccCCccCceeeEEecccchhhhcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHR-SIVEEG----K--VLSAD---AESLMKEIHCLEQLNLITLSLHGSRGVENFL   71 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~-~~~~~~----~--~~~~~---~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~   71 (214)
                      ..+|.+.+.++++|++|++.++...+. +..+..    .  .+...   .......+..+++|+.|+++......+..  
T Consensus        45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--  122 (285)
T 1ozn_A           45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP--  122 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT--
T ss_pred             CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECH--
Confidence            445655677888888888887765322 111100    0  00000   00012234556677777665333322210  


Q ss_pred             CCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-c-cc
Q 028049           72 KFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-T-WL  148 (214)
Q Consensus        72 ~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p-~~  148 (214)
                      ..-.-.+.++.|+++++ .+..++ ..+..+++|++|++.++.+..++....   ..+++|+.|+++++ ++..+ | .+
T Consensus       123 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~  197 (285)
T 1ozn_A          123 GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQN-RVAHVHPHAF  197 (285)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCCEECTTTT
T ss_pred             hHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHh---cCccccCEEECCCC-cccccCHhHc
Confidence            00011357899999886 344444 447788999999999977777654321   35889999999987 56665 3 36


Q ss_pred             CCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          149 VFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       149 ~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      ..+++|++|+++++ .+..++.              ..+..+++|+.|++.+.|
T Consensus       198 ~~l~~L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          198 RDLGRLMTLYLFAN-NLSALPT--------------EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCH--------------HHHTTCTTCCEEECCSSC
T ss_pred             cCcccccEeeCCCC-cCCcCCH--------------HHcccCcccCEEeccCCC
Confidence            67899999999987 4443332              134567889999988775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.97  E-value=9.5e-10  Score=91.35  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=17.8

Q ss_pred             CCChhhhccCcccceEEccccCc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      .+|.. ++++++|++|++.+++.
T Consensus        92 ~~p~~-l~~l~~L~~L~Ls~n~l  113 (313)
T 1ogq_A           92 PIPPA-IAKLTQLHYLYITHTNV  113 (313)
T ss_dssp             CCCGG-GGGCTTCSEEEEEEECC
T ss_pred             cCChh-HhcCCCCCEEECcCCee
Confidence            56764 88888999999988877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.95  E-value=2.3e-09  Score=94.44  Aligned_cols=135  Identities=13%  Similarity=0.165  Sum_probs=82.9

Q ss_pred             hhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccc
Q 028049           46 KEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGE  124 (214)
Q Consensus        46 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~  124 (214)
                      ..+..+++|+.|+++-.....++.+...-.-.+.++.|+++++.-...++ ..+..+++|++|+++++.+.....     
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-----  416 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-----  416 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-----
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh-----
Confidence            34566677777777654444333221110112467778887754322254 235566778888877755532211     


Q ss_pred             cCCC-CCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          125 VQKM-PKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       125 ~~~~-~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                       ..+ ++|+.|++++| +++.+|. +..+++|++|+++++ .+..++.              ..+..+++|++|++.+.|
T Consensus       417 -~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~--------------~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          417 -RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPD--------------GIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             -GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred             -hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCH--------------HHhccCCcccEEECcCCC
Confidence             112 68888888887 7778874 557888888888886 4554433              125668889999998876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.95  E-value=4.3e-09  Score=81.45  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=97.0

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQT   78 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~   78 (214)
                      +..+| + +..+++|++|++.+|....                 +..+..+++|+.|+++......  ...+.   . .+
T Consensus        56 i~~l~-~-l~~l~~L~~L~l~~n~~~~-----------------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~---~-l~  112 (197)
T 4ezg_A           56 VTDLT-G-IEYAHNIKDLTINNIHATN-----------------YNPISGLSNLERLRIMGKDVTSDKIPNLS---G-LT  112 (197)
T ss_dssp             CSCCT-T-GGGCTTCSEEEEESCCCSC-----------------CGGGTTCTTCCEEEEECTTCBGGGSCCCT---T-CT
T ss_pred             ccChH-H-HhcCCCCCEEEccCCCCCc-----------------chhhhcCCCCCEEEeECCccCcccChhhc---C-CC
Confidence            34577 3 8999999999999996521                 2246677899999988655443  22221   2 35


Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccc-cceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESN-LEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL  157 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~-l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L  157 (214)
                      .++.|+++++.--...+..+..+++|++|+++++. +..++ .    ...+++|+.|++++| +++.++.+..+++|++|
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~----l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L  186 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P----LKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQL  186 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G----GGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h----hcCCCCCCEEECCCC-CCcChHHhccCCCCCEE
Confidence            79999999874322233567888999999999954 66653 1    235899999999987 68888777789999999


Q ss_pred             eEecC
Q 028049          158 RILDC  162 (214)
Q Consensus       158 ~i~~C  162 (214)
                      ++++.
T Consensus       187 ~l~~N  191 (197)
T 4ezg_A          187 YAFSQ  191 (197)
T ss_dssp             EECBC
T ss_pred             EeeCc
Confidence            99874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.95  E-value=1.7e-09  Score=91.01  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=91.9

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ++.||.+ +.  ++|++|++.++...+.               ..+.+..+++|+.|+++......+..- .+. -.+.+
T Consensus        43 l~~iP~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~-~l~~L  102 (353)
T 2z80_A           43 LNSIPSG-LT--EAVKSLDLSNNRITYI---------------SNSDLQRCVNLQALVLTSNGINTIEED-SFS-SLGSL  102 (353)
T ss_dssp             CSSCCTT-CC--TTCCEEECTTSCCCEE---------------CTTTTTTCTTCCEEECTTSCCCEECTT-TTT-TCTTC
T ss_pred             ccccccc-cc--ccCcEEECCCCcCccc---------------CHHHhccCCCCCEEECCCCccCccCHh-hcC-CCCCC
Confidence            3567875 33  4899999999987322               112356678888888764443332210 011 12568


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEE
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCL  157 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L  157 (214)
                      +.|+++++ .+..++ ..+..+++|++|+++++.+..++..  +....+++|++|+++++..+..++.  +..+++|++|
T Consensus       103 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          103 EHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             CEEECCSS-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CEEECCCC-cCCcCCHhHhCCCccCCEEECCCCCCcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            89999875 445555 3467788999999988666665430  1123588899999998877777753  5668889999


Q ss_pred             eEecCc
Q 028049          158 RILDCD  163 (214)
Q Consensus       158 ~i~~C~  163 (214)
                      +++++.
T Consensus       180 ~l~~n~  185 (353)
T 2z80_A          180 EIDASD  185 (353)
T ss_dssp             EEEETT
T ss_pred             ECCCCC
Confidence            988864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.95  E-value=1.2e-09  Score=89.91  Aligned_cols=25  Identities=16%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             CCCCChhhhccCcccceEEccccCc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      ++.||.+++.++++|++|++.+++.
T Consensus        40 l~~i~~~~~~~l~~L~~L~L~~n~l   64 (306)
T 2z66_A           40 LQSLPHGVFDKLTQLTKLSLSSNGL   64 (306)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             cCccCHhHhhccccCCEEECCCCcc
Confidence            3567777678888888888888766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=1.8e-09  Score=101.52  Aligned_cols=151  Identities=18%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             CChhhhccCcccceEEccccCccc--ccccccccccchhhHhhhhhcc--CCccCceeeEEeccc-chhhhccCCcchhc
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAH--RSIVEEGKVLSADAESLMKEIH--CLEQLNLITLSLHGS-RGVENFLKFPKLQT   78 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~--~~~~~~~~~~~~~~~~~l~eL~--~L~~L~~L~i~~~~~-~~l~~l~~~~~l~~   78 (214)
                      ||.+ +++|++|++|++.++++.+  .+..|-.............++.  .+++|+.|+++.... ..++..+   .-.+
T Consensus       440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l---~~L~  515 (876)
T 4ecn_A          440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL---YDLP  515 (876)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG---GGCS
T ss_pred             hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH---hCCC
Confidence            8885 9999999999999998843  0000000000000011334455  677888888764332 1122111   1124


Q ss_pred             cccEEeecCCCCCCc--hhhhcccc-------cccchhhccccccceeec--ccccccCCCCCccEEeeecCcCCccCcc
Q 028049           79 ITQALHIEDCNSLPL--NLLHLANM-------EHLEKLFIEESNLEDWNV--DCAGEVQKMPKLHSVLIWNCSNVKDLTW  147 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~--l~~~l~~l-------~~L~~L~i~~~~l~~l~~--~~~~~~~~~~~L~~L~I~~C~~L~~lp~  147 (214)
                      +|+.|+++++..+..  +|..+..+       ++|++|++.++.+..++.  ..    ..+++|+.|+++++ ++..+|.
T Consensus       516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l----~~L~~L~~L~Ls~N-~l~~lp~  590 (876)
T 4ecn_A          516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL----QKMVKLGLLDCVHN-KVRHLEA  590 (876)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH----TTCTTCCEEECTTS-CCCBCCC
T ss_pred             CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh----hcCCCCCEEECCCC-Ccccchh
Confidence            677888877654443  44333333       377777777766655543  12    24677777777765 4556665


Q ss_pred             cCCCCCccEEeEecCc
Q 028049          148 LVFAPNLKCLRILDCD  163 (214)
Q Consensus       148 ~~~l~~L~~L~i~~C~  163 (214)
                      +..+++|+.|+++++.
T Consensus       591 ~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          591 FGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             CCTTSEESEEECCSSC
T ss_pred             hcCCCcceEEECcCCc
Confidence            5666777777776653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.94  E-value=1e-09  Score=90.29  Aligned_cols=18  Identities=17%  Similarity=0.091  Sum_probs=14.6

Q ss_pred             hccCcccceEEccccCcc
Q 028049            9 ISSFSKLQVLRMLHCGYA   26 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~   26 (214)
                      +..+++|++|++.+++..
T Consensus        74 ~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             HHSCSCCCEEECCSCSEE
T ss_pred             cccccccCEEECCCCccc
Confidence            567889999999988763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.94  E-value=4.6e-09  Score=87.55  Aligned_cols=141  Identities=13%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA   82 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~   82 (214)
                      .+|.+++.++++|++|++.++.....             ......+..+ +|+.++++......++..     ..+.++.
T Consensus       137 ~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~-----~~~~L~~  197 (332)
T 2ft3_A          137 KVPKGVFSGLRNMNCIEMGGNPLENS-------------GFEPGAFDGL-KLNYLRISEAKLTGIPKD-----LPETLNE  197 (332)
T ss_dssp             CCCSGGGSSCSSCCEEECCSCCCBGG-------------GSCTTSSCSC-CCSCCBCCSSBCSSCCSS-----SCSSCSC
T ss_pred             ccCHhHhCCCccCCEEECCCCccccC-------------CCCcccccCC-ccCEEECcCCCCCccCcc-----ccCCCCE
Confidence            44544556666666666666654110             0011223333 555555543333332211     1246788


Q ss_pred             EeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEe
Q 028049           83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRIL  160 (214)
Q Consensus        83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~  160 (214)
                      |+++++ .+..++ ..+..+++|++|++.++.+..+...+   ...+++|+.|+++++ +++.+|. +..+++|++|+++
T Consensus       198 L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~  272 (332)
T 2ft3_A          198 LHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS---LSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLH  272 (332)
T ss_dssp             CBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG---GGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECC
T ss_pred             EECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhH---hhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECC
Confidence            888775 334433 45677888999998887666654322   135789999999887 7888875 6778999999998


Q ss_pred             cCcccccc
Q 028049          161 DCDDMEEI  168 (214)
Q Consensus       161 ~C~~l~~i  168 (214)
                      ++ .+..+
T Consensus       273 ~N-~l~~~  279 (332)
T 2ft3_A          273 TN-NITKV  279 (332)
T ss_dssp             SS-CCCBC
T ss_pred             CC-CCCcc
Confidence            85 45544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.93  E-value=4e-10  Score=93.76  Aligned_cols=162  Identities=17%  Similarity=0.175  Sum_probs=100.4

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCcchhccccEEeec
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFPKLQTITQALHIE   86 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l~   86 (214)
                      +.++++|++|++++|...              .......+..+++|+.|+++......  ...+..    .++|+.|+++
T Consensus        89 ~~~~~~L~~L~L~~~~l~--------------~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~  150 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIE--------------VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLS  150 (336)
T ss_dssp             CCCCBCCCEEECTTCEEC--------------HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECT
T ss_pred             hccCCCCCEEEccCCCcC--------------HHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECC
Confidence            456777777777777651              11122335667788888776433221  112211    3578889999


Q ss_pred             CCCCCCc--hhhhcccccccchhhcccc-ccceeecccccccCCCC-CccEEeeecCc-CCc--cCcc-cCCCCCccEEe
Q 028049           87 DCNSLPL--NLLHLANMEHLEKLFIEES-NLEDWNVDCAGEVQKMP-KLHSVLIWNCS-NVK--DLTW-LVFAPNLKCLR  158 (214)
Q Consensus        87 ~c~~l~~--l~~~l~~l~~L~~L~i~~~-~l~~l~~~~~~~~~~~~-~L~~L~I~~C~-~L~--~lp~-~~~l~~L~~L~  158 (214)
                      +|..+..  ++..+..+++|++|++.++ .+......  .....++ +|++|++++|. .+.  .++. +..+++|++|+
T Consensus       151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH--HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH--HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            8876663  3344667788899988874 66542110  0012477 89999999886 453  2332 44688999999


Q ss_pred             EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccc
Q 028049          159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNL  204 (214)
Q Consensus       159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L  204 (214)
                      +++|..+.....              ..+..+++|++|++.+|+.+
T Consensus       229 l~~~~~l~~~~~--------------~~l~~l~~L~~L~l~~~~~~  260 (336)
T 2ast_B          229 LSDSVMLKNDCF--------------QEFFQLNYLQHLSLSRCYDI  260 (336)
T ss_dssp             CTTCTTCCGGGG--------------GGGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCcCCHHHH--------------HHHhCCCCCCEeeCCCCCCC
Confidence            998875542211              13455689999999998643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.92  E-value=3.7e-09  Score=97.90  Aligned_cols=136  Identities=11%  Similarity=0.045  Sum_probs=81.4

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      ++++++|++|++++|.+.+             .......+..+++|+.|+++......... .....-.++|+.|+++++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           96 FKCSASLTSLDLSRNSLSG-------------PVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             CCCCTTCCEEECCSSEEEE-------------EGGGGGGGGGCTTCCEEECCSSEEECCSS-CCSCCCCTTCSEEECCSS
T ss_pred             hccCCCCCEEECCCCcCCC-------------cCCChHHHhCCCCCCEEECcCCccCCcCC-HHHhccCCCCCEEECCCC
Confidence            7888888888888887621             11123356777888888876433211000 000011356888888886


Q ss_pred             CCCCchhhh---cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049           89 NSLPLNLLH---LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD  163 (214)
Q Consensus        89 ~~l~~l~~~---l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~  163 (214)
                      .--...+..   +..+++|++|+++++.+.....     ...+++|++|++++|.--..+|.+..+++|++|++++|.
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK  234 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCC-----cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence            432222222   5677888888888744443211     135788888888887443334556677888888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.92  E-value=1.1e-08  Score=89.21  Aligned_cols=76  Identities=20%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .++.|+++++. +..+ ..+..+++|++|++.++.+..+..     ...+++|+.|++++| +++.++.+..+++|++|+
T Consensus       178 ~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~  249 (466)
T 1o6v_A          178 TLERLDISSNK-VSDI-SVLAKLTNLESLIATNNQISDITP-----LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLD  249 (466)
T ss_dssp             TCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-----GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEE
T ss_pred             CCCEEECcCCc-CCCC-hhhccCCCCCEEEecCCccccccc-----ccccCCCCEEECCCC-CcccchhhhcCCCCCEEE
Confidence            34555555442 2222 123444555555555533333211     123566666666665 455555555566666666


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      +++|
T Consensus       250 l~~n  253 (466)
T 1o6v_A          250 LANN  253 (466)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.91  E-value=3.7e-09  Score=84.85  Aligned_cols=140  Identities=11%  Similarity=0.106  Sum_probs=99.7

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..++.+.++++++|++|++.++...+.               ..+.+..+++|+.|+++-.....+..- .+ .-.+.|+
T Consensus        48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~  110 (251)
T 3m19_A           48 ATLSDATFRGLTKLTWLNLDYNQLQTL---------------SAGVFDDLTELGTLGLANNQLASLPLG-VF-DHLTQLD  110 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTCTTCCEEECTTSCCCCCCTT-TT-TTCTTCC
T ss_pred             CccCHhHhcCcccCCEEECCCCcCCcc---------------CHhHhccCCcCCEEECCCCcccccChh-Hh-cccCCCC
Confidence            456766799999999999999987332               112356678888888765444333210 01 1235789


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|++|++.++.+..++...   ...+++|+.|+++++ +++.++.  +..+++|++|+
T Consensus       111 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  185 (251)
T 3m19_A          111 KLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA---FDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTIT  185 (251)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             EEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHH---cCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence            9999886 556665 34677899999999998787765422   235899999999986 7888874  56789999999


Q ss_pred             EecCc
Q 028049          159 ILDCD  163 (214)
Q Consensus       159 i~~C~  163 (214)
                      +.+++
T Consensus       186 l~~N~  190 (251)
T 3m19_A          186 LFGNQ  190 (251)
T ss_dssp             CCSCC
T ss_pred             eeCCc
Confidence            98753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.91  E-value=1.1e-08  Score=89.25  Aligned_cols=18  Identities=11%  Similarity=0.213  Sum_probs=14.3

Q ss_pred             hccCcccceEEccccCcc
Q 028049            9 ISSFSKLQVLRMLHCGYA   26 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~   26 (214)
                      +.++++|++|++.+|...
T Consensus       195 l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             GGGCTTCSEEECCSSCCC
T ss_pred             hccCCCCCEEEecCCccc
Confidence            778888888888888763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.90  E-value=3.2e-09  Score=88.48  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             CCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccE
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQA   82 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~   82 (214)
                      .+|.+.++++++|++|++.+++..+.               ....+..+++|+.|+++......++.-     ..+.++.
T Consensus        68 ~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~l~~~-----~~~~L~~  127 (332)
T 2ft3_A           68 ELRKDDFKGLQHLYALVLVNNKISKI---------------HEKAFSPLRKLQKLYISKNHLVEIPPN-----LPSSLVE  127 (332)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEE---------------CGGGSTTCTTCCEEECCSSCCCSCCSS-----CCTTCCE
T ss_pred             ccCHhHhhCCCCCcEEECCCCccCcc---------------CHhHhhCcCCCCEEECCCCcCCccCcc-----ccccCCE
Confidence            34444466677777777776665211               123456667777777764443333221     1256788


Q ss_pred             EeecCCCCCCchh-hhcccccccchhhccccccc
Q 028049           83 LHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLE  115 (214)
Q Consensus        83 L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~  115 (214)
                      |+++++ .+..++ ..+..+++|++|++.++.+.
T Consensus       128 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          128 LRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EECCCC-ccCccCHhHhCCCccCCEEECCCCccc
Confidence            888775 334444 34667778888887774443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.90  E-value=3.2e-09  Score=86.17  Aligned_cols=17  Identities=12%  Similarity=-0.005  Sum_probs=10.6

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +..+++|++|++.+|+.
T Consensus        37 ~~~l~~L~~L~l~~n~i   53 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNI   53 (263)
T ss_dssp             HHHHTTCSEEECTTSCC
T ss_pred             hhhcCcCcEEECcCCCc
Confidence            45566666666666655

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.89  E-value=1.3e-08  Score=87.97  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=12.2

Q ss_pred             CChhhhccCcccceEEccccCc
Q 028049            4 IPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      ||.+.++++++|++|++.+++.
T Consensus        70 i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           70 IRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTCTT
T ss_pred             ECcccccccccCCEEeCCCCcc
Confidence            4444455566666666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.89  E-value=1.5e-09  Score=98.55  Aligned_cols=151  Identities=15%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             CChhhhccCcccceEEccccCccc--ccccccccccchhhHhhhhhcc--CCccCceeeEEecccchhhhccCCcchhcc
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAH--RSIVEEGKVLSADAESLMKEIH--CLEQLNLITLSLHGSRGVENFLKFPKLQTI   79 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~--~~~~~~~~~~~~~~~~~l~eL~--~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~   79 (214)
                      ||.. ++++++|++|++.++++.+  .+..|-.............++.  .+++|+.|+++......  .++..-.-.++
T Consensus       198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~  274 (636)
T 4eco_A          198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT--KLPTFLKALPE  274 (636)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS--SCCTTTTTCSS
T ss_pred             CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc--cChHHHhcCCC
Confidence            7885 9999999999999998743  0001111000000011334555  77888888876443211  11111111246


Q ss_pred             ccEEeecCCCCCCc--hhhhcccc------cccchhhccccccceeec--ccccccCCCCCccEEeeecCcCCc-cCccc
Q 028049           80 TQALHIEDCNSLPL--NLLHLANM------EHLEKLFIEESNLEDWNV--DCAGEVQKMPKLHSVLIWNCSNVK-DLTWL  148 (214)
Q Consensus        80 l~~L~l~~c~~l~~--l~~~l~~l------~~L~~L~i~~~~l~~l~~--~~~~~~~~~~~L~~L~I~~C~~L~-~lp~~  148 (214)
                      |+.|+++++..+..  ++..+..+      ++|++|++.++.+..++.  ..    ..+++|+.|+++++ ++. .+|.+
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l----~~l~~L~~L~L~~N-~l~g~ip~~  349 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL----QKMKKLGMLECLYN-QLEGKLPAF  349 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH----TTCTTCCEEECCSC-CCEEECCCC
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh----ccCCCCCEEeCcCC-cCccchhhh
Confidence            78888887764543  44334443      777888777765655543  22    24677777777765 455 56644


Q ss_pred             CCCCCccEEeEecC
Q 028049          149 VFAPNLKCLRILDC  162 (214)
Q Consensus       149 ~~l~~L~~L~i~~C  162 (214)
                      ..+++|++|+++++
T Consensus       350 ~~l~~L~~L~L~~N  363 (636)
T 4eco_A          350 GSEIKLASLNLAYN  363 (636)
T ss_dssp             EEEEEESEEECCSS
T ss_pred             CCCCCCCEEECCCC
Confidence            45566777776665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.88  E-value=7.2e-09  Score=92.87  Aligned_cols=34  Identities=15%  Similarity=0.222  Sum_probs=17.1

Q ss_pred             CCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049          129 PKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD  163 (214)
Q Consensus       129 ~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~  163 (214)
                      ++|+.|.+.++ +++.+|.+..+++|++|++.+|.
T Consensus       285 ~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          285 ANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             TTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCC
T ss_pred             CCCCEEEecCc-cchhhhhccccccCCEEEccccc
Confidence            34444444443 33444444445566666666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.88  E-value=2.5e-09  Score=88.78  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=17.9

Q ss_pred             CCChhhhccCcccceEEccccCc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      .+|.. ++++++|++|++.++..
T Consensus       116 ~~p~~-~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A          116 AIPDF-LSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             ECCGG-GGGCTTCCEEECCSSEE
T ss_pred             cCCHH-HhCCCCCCEEeCCCCcc
Confidence            45664 88999999999999877

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.86  E-value=1.1e-08  Score=83.01  Aligned_cols=131  Identities=13%  Similarity=0.191  Sum_probs=99.8

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ++.+|.  ++.+++|++|++.+++..+.                 ..+..+++|+.|+++-.....++.+..     ..+
T Consensus        53 i~~l~~--l~~l~~L~~L~L~~N~i~~~-----------------~~l~~l~~L~~L~L~~N~l~~l~~~~~-----~~L  108 (263)
T 1xeu_A           53 IQSLAG--MQFFTNLKELHLSHNQISDL-----------------SPLKDLTKLEELSVNRNRLKNLNGIPS-----ACL  108 (263)
T ss_dssp             CCCCTT--GGGCTTCCEEECCSSCCCCC-----------------GGGTTCSSCCEEECCSSCCSCCTTCCC-----SSC
T ss_pred             cccchH--HhhCCCCCEEECCCCccCCC-----------------hhhccCCCCCEEECCCCccCCcCcccc-----Ccc
Confidence            356773  89999999999999987322                 115677889999888666555554322     689


Q ss_pred             cEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEe
Q 028049           81 QALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRIL  160 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~  160 (214)
                      +.|+++++ .+..++ .+..+++|+.|+++++.+..+. .    ...+++|+.|+++++ ++..++.+..+++|+.|+++
T Consensus       109 ~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~----l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~  180 (263)
T 1xeu_A          109 SRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIV-M----LGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLT  180 (263)
T ss_dssp             CEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCG-G----GGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEE
T ss_pred             cEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCCh-H----HccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCC
Confidence            99999987 555553 5778899999999997777653 1    235899999999986 77777767789999999998


Q ss_pred             cCc
Q 028049          161 DCD  163 (214)
Q Consensus       161 ~C~  163 (214)
                      ++.
T Consensus       181 ~N~  183 (263)
T 1xeu_A          181 GQK  183 (263)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.85  E-value=5.4e-09  Score=93.70  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=37.2

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccce--eecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCc
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLED--WNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNL  154 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~--l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L  154 (214)
                      .++.|+++++.-....+..+..+++|++|++.++.+..  ++..    ...+++|+.|++++| ++..++  .+..+++|
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  499 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLTFLDLSKC-QLEQISWGVFDTLHRL  499 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHh----hccCCCCCEEECCCC-cCCccChhhhcccccC
Confidence            45556665553221122334455556666655533332  1111    123556666666655 444432  14445666


Q ss_pred             cEEeEecC
Q 028049          155 KCLRILDC  162 (214)
Q Consensus       155 ~~L~i~~C  162 (214)
                      ++|+++++
T Consensus       500 ~~L~Ls~N  507 (606)
T 3vq2_A          500 QLLNMSHN  507 (606)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            66666555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.85  E-value=1.2e-08  Score=91.47  Aligned_cols=141  Identities=17%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..+|.+.++++++|++|++.++.....|                ..+..+++|+.|+++-.....+..  ..-.-.+.++
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp----------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~  328 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELP----------------SGLVGLSTLKKLVLSANKFENLCQ--ISASNFPSLT  328 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCC----------------SSCCSCTTCCEEECTTCCCSBGGG--GCGGGCTTCS
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCC----------------hhhcccccCCEEECccCCcCcCch--hhhhccCcCC
Confidence            3466666778888888888888763322                124455666666654333222210  0001123566


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l~~L~~L~  158 (214)
                      .|+++++.-...++ ..+..+++|++|+++++.+..+... ......+++|++|++++| ++..++  .+..+++|++|+
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  406 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC-NLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLD  406 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES-TTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEE
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc-chhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEE
Confidence            67776654332332 2355566666666666444443210 001124566666666655 333332  134455666666


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      ++++
T Consensus       407 l~~n  410 (606)
T 3t6q_A          407 LAFT  410 (606)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.84  E-value=4.8e-09  Score=94.94  Aligned_cols=147  Identities=17%  Similarity=0.249  Sum_probs=105.7

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      ...|++|+.|++.++....                 +..+..+++|+.|+++-..+..+..+.    -.+.|+.|+|+++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~-----------------l~~l~~l~~L~~L~Ls~N~l~~~~~l~----~l~~L~~L~Ls~N   97 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKS-----------------VQGIQYLPNVTKLFLNGNKLTDIKPLT----NLKNLGWLFLDEN   97 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCC-----------------CTTGGGCTTCCEEECTTSCCCCCGGGG----GCTTCCEEECCSS
T ss_pred             hhcCCCCCEEECcCCCCCC-----------------ChHHccCCCCCEEEeeCCCCCCChhhc----cCCCCCEEECcCC
Confidence            4578899999999988722                 224666788888888755544444322    2357899999887


Q ss_pred             CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i  168 (214)
                       .+..++ .+..+++|+.|++.++.+..+..     ...+++|+.|.+++| ++..++.+..+++|+.|++++|. +..+
T Consensus        98 -~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~  168 (605)
T 1m9s_A           98 -KIKDLS-SLKDLKKLKSLSLEHNGISDING-----LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDI  168 (605)
T ss_dssp             -CCCCCT-TSTTCTTCCEEECTTSCCCCCGG-----GGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCC
T ss_pred             -CCCCCh-hhccCCCCCEEEecCCCCCCCcc-----ccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCc
Confidence             445553 67788899999999866665421     235899999999987 78888777889999999998873 3333


Q ss_pred             cccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049          169 ISVENFEKLIEVSEMMGELNLFSGLESLSLGNA  201 (214)
Q Consensus       169 ~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c  201 (214)
                      +                .+..+++|+.|+++++
T Consensus       169 ~----------------~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          169 V----------------PLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             G----------------GGTTCTTCCEEECCSS
T ss_pred             h----------------hhccCCCCCEEECcCC
Confidence            2                2445678888888765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.83  E-value=1.6e-08  Score=90.24  Aligned_cols=156  Identities=14%  Similarity=0.164  Sum_probs=99.4

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      ..+++|++|++.+++..+               .....+..+++|+.|+++-.....++.+...-.-.+.++.|+++++.
T Consensus       350 ~~l~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTD---------------SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             SSCCCCCEEECCSSCCCT---------------TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             cCCCCceEEECCCCcccc---------------chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence            556677777777766521               12334566778888887655544443322111123568888888764


Q ss_pred             CCCchh-hhcccccccchhhccccccceeecccccccCCC-CCccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccc
Q 028049           90 SLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKM-PKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDME  166 (214)
Q Consensus        90 ~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~-~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~  166 (214)
                      --..++ ..+..+++|++|+++++.+.....      ..+ ++|+.|+++++ +++.+|. +..+++|++|+++++ ++.
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~  486 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVF------RCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLK  486 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG------SSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCC
T ss_pred             CCCccChhhhcCcccCCEEECCCCCCCcchh------hhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCC
Confidence            322244 335667788888888755543211      123 68999999987 8888874 567899999999885 455


Q ss_pred             cccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          167 EIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       167 ~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      .++.              ..+..+++|+.|++.+.|
T Consensus       487 ~l~~--------------~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          487 SVPD--------------GVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCT--------------TSTTTCTTCCCEECCSCC
T ss_pred             CCCH--------------HHHhcCCCCCEEEecCCC
Confidence            5443              125678889999998876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=1.7e-08  Score=83.01  Aligned_cols=147  Identities=15%  Similarity=0.218  Sum_probs=101.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccc-cc-----cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEG-KV-----LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPK   75 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~-~~-----~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~   75 (214)
                      +.+|.  +..+++|++|++++|+..+.+. +.. ..     +....-..+..+..+++|+.|+++-.....++.+..   
T Consensus        59 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~l~~---  132 (291)
T 1h6t_A           59 KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH---  132 (291)
T ss_dssp             CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGG---
T ss_pred             ccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChhhcC---
Confidence            34554  7778888888888887654432 110 00     111111124457778889999887555555443322   


Q ss_pred             hhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCcc
Q 028049           76 LQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLK  155 (214)
Q Consensus        76 l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~  155 (214)
                       .++++.|+++++ .+..+ ..+..+++|+.|+++++.+..+..     ...+++|+.|+++++ +++.++.+..+++|+
T Consensus       133 -l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~  203 (291)
T 1h6t_A          133 -LPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKN-HISDLRALAGLKNLD  203 (291)
T ss_dssp             -CTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCBCGGGTTCTTCS
T ss_pred             -CCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCC-cCCCChhhccCCCCC
Confidence             257899999886 44555 467788999999999877766532     246899999999987 888888888899999


Q ss_pred             EEeEecCc
Q 028049          156 CLRILDCD  163 (214)
Q Consensus       156 ~L~i~~C~  163 (214)
                      .|++++++
T Consensus       204 ~L~l~~n~  211 (291)
T 1h6t_A          204 VLELFSQE  211 (291)
T ss_dssp             EEEEEEEE
T ss_pred             EEECcCCc
Confidence            99999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.82  E-value=1.5e-08  Score=88.54  Aligned_cols=125  Identities=12%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      ++++++|++|+++++...+.                 .++..+++|+.|+++-.....++ +   .. .++++.|+++++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-----------------~~l~~l~~L~~L~Ls~n~l~~~~-~---~~-l~~L~~L~Ls~N   95 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-----------------TGIEKLTGLTKLICTSNNITTLD-L---SQ-NTNLTYLACDSN   95 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-----------------TTGGGCTTCSEEECCSSCCSCCC-C---TT-CTTCSEEECCSS
T ss_pred             hhHcCCCCEEEccCCCcccC-----------------hhhcccCCCCEEEccCCcCCeEc-c---cc-CCCCCEEECcCC
Confidence            67899999999999987321                 13455677777777654444432 1   11 246777777775


Q ss_pred             CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccc
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDME  166 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~  166 (214)
                      . +..+  .+..+++|++|+++++.+..++  .    ..+++|+.|+++++ +++.++ +..+++|++|++++|..+.
T Consensus        96 ~-l~~~--~~~~l~~L~~L~L~~N~l~~l~--~----~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~  162 (457)
T 3bz5_A           96 K-LTNL--DVTPLTKLTYLNCDTNKLTKLD--V----SQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKIT  162 (457)
T ss_dssp             C-CSCC--CCTTCTTCCEEECCSSCCSCCC--C----TTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCC
T ss_pred             C-Ccee--ecCCCCcCCEEECCCCcCCeec--C----CCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccc
Confidence            3 4444  2566677777777775555542  1    24666777777664 455554 3456666666666664443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.81  E-value=4.6e-08  Score=85.50  Aligned_cols=126  Identities=11%  Similarity=0.074  Sum_probs=83.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..+|.  ++++++|++|+++++...+.                  .+..+++|+.|+++-.....++ +   .. .+.++
T Consensus        55 ~~~~~--l~~l~~L~~L~Ls~n~l~~~------------------~~~~l~~L~~L~Ls~N~l~~~~-~---~~-l~~L~  109 (457)
T 3bz5_A           55 TDMTG--IEKLTGLTKLICTSNNITTL------------------DLSQNTNLTYLACDSNKLTNLD-V---TP-LTKLT  109 (457)
T ss_dssp             CCCTT--GGGCTTCSEEECCSSCCSCC------------------CCTTCTTCSEEECCSSCCSCCC-C---TT-CTTCC
T ss_pred             ccChh--hcccCCCCEEEccCCcCCeE------------------ccccCCCCCEEECcCCCCceee-c---CC-CCcCC
Confidence            45663  89999999999999987321                  1556677888887655444432 2   12 34678


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      .|+++++ .+..+  .+..+++|++|++.++.+..+.  .    ..+++|+.|++++|..+..++ +..+++|++|++++
T Consensus       110 ~L~L~~N-~l~~l--~~~~l~~L~~L~l~~N~l~~l~--l----~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          110 YLNCDTN-KLTKL--DVSQNPLLTYLNCARNTLTEID--V----SHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSF  179 (457)
T ss_dssp             EEECCSS-CCSCC--CCTTCTTCCEEECTTSCCSCCC--C----TTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCS
T ss_pred             EEECCCC-cCCee--cCCCCCcCCEEECCCCccceec--c----ccCCcCCEEECCCCCcccccc-cccCCcCCEEECCC
Confidence            8888776 44444  2667778888888776665542  1    246777777777776666653 34567777777766


Q ss_pred             C
Q 028049          162 C  162 (214)
Q Consensus       162 C  162 (214)
                      +
T Consensus       180 n  180 (457)
T 3bz5_A          180 N  180 (457)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.81  E-value=7.9e-09  Score=83.82  Aligned_cols=136  Identities=15%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +.  ++|++|++.+++..+.+               ...+..+++|+.|+++-.....+..- .+. -.+.++
T Consensus        20 ~~ip~~-l~--~~l~~L~ls~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~-~l~~L~   79 (276)
T 2z62_A           20 YKIPDN-LP--FSTKNLDLSFNPLRHLG---------------SYSFFSFPELQVLDLSRCEIQTIEDG-AYQ-SLSHLS   79 (276)
T ss_dssp             SSCCSS-SC--TTCCEEECTTCCCCEEC---------------TTTTTTCTTCSEEECTTCCCCEECTT-TTT-TCTTCC
T ss_pred             cccCCC-CC--CCccEEECCCCcccccC---------------HhHhccccCCcEEECCCCcCCccCHH-Hcc-CCcCCC
Confidence            457765 33  57999999999873321               11345566777776653333222210 011 124677


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc--Cc-ccCCCCCccEE
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD--LT-WLVFAPNLKCL  157 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~--lp-~~~~l~~L~~L  157 (214)
                      .|+++++. +..++ ..+..+++|++|++.++.+..+....   ...+++|+.|+++++ +++.  +| .+..+++|++|
T Consensus        80 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           80 TLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             EEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred             EEECCCCc-cCccChhhhcCCccccEEECCCCCccccCchh---cccCCCCCEEECcCC-ccceecCchhhccCCCCCEE
Confidence            77777653 33333 34566677777777665444432211   134667777777765 4444  33 24556777777


Q ss_pred             eEecC
Q 028049          158 RILDC  162 (214)
Q Consensus       158 ~i~~C  162 (214)
                      +++++
T Consensus       155 ~Ls~N  159 (276)
T 2z62_A          155 DLSSN  159 (276)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            77665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.78  E-value=1.6e-08  Score=90.63  Aligned_cols=159  Identities=11%  Similarity=0.142  Sum_probs=79.3

Q ss_pred             CCChhhhccCcccceEEccccCccccc---cccccc-c-----cchhh--HhhhhhccCCccCceeeEEecccchhhhcc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGYAHRS---IVEEGK-V-----LSADA--ESLMKEIHCLEQLNLITLSLHGSRGVENFL   71 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~~~~~---~~~~~~-~-----~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~   71 (214)
                      .+|.+.+.++++|++|++.+++..+..   ..+... .     +....  ....+.+..+++|+.|+++.........-.
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            567777889999999999998773321   000000 0     00000  001122333444555544322211110000


Q ss_pred             CCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--ccC
Q 028049           72 KFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLV  149 (214)
Q Consensus        72 ~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~  149 (214)
                      .+. -.+.++.|+++++.--...+..+..+++|++|+++++.+.............+++|+.|++++| ++..++  .+.
T Consensus       420 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~  497 (606)
T 3t6q_A          420 PFQ-NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFT  497 (606)
T ss_dssp             TTT-TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTT
T ss_pred             hhh-CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhc
Confidence            000 1235667777665322111234556677777777775444321111111235778888888877 555553  255


Q ss_pred             CCCCccEEeEecCc
Q 028049          150 FAPNLKCLRILDCD  163 (214)
Q Consensus       150 ~l~~L~~L~i~~C~  163 (214)
                      .+++|++|+++++.
T Consensus       498 ~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          498 SLKMMNHVDLSHNR  511 (606)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             cccCCCEEECCCCc
Confidence            67888888888763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.78  E-value=9.2e-09  Score=91.24  Aligned_cols=105  Identities=12%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccc--eeecccccccCCCCCccEEeeecCcCCccC-c-ccCCCCC
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLE--DWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-T-WLVFAPN  153 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~--~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p-~~~~l~~  153 (214)
                      ++++.|++++|.-....+..+..+++|++|++.++.+.  .++..    ...+++|+.|++++| +++.+ | .+..+++
T Consensus       421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~----~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQC-QLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC----CTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred             CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh----hhcccCCCEEECCCC-ccccCChhhhhcccC
Confidence            35666666665322222234555667777777664433  22211    134677777777776 45555 3 2556777


Q ss_pred             ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      |++|++++| ++..++.              ..+..+++|+.|++.+.|
T Consensus       496 L~~L~l~~n-~l~~~~~--------------~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          496 LQVLNMASN-QLKSVPD--------------GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             CCEEECCSS-CCSCCCT--------------TTTTTCTTCCEEECCSSC
T ss_pred             CCEEeCCCC-cCCCCCH--------------HHhhcccCCcEEEecCCc
Confidence            777777776 3443332              245677889999998865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=1e-08  Score=96.39  Aligned_cols=140  Identities=12%  Similarity=0.106  Sum_probs=86.8

Q ss_pred             CChhhhc--cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecc-cch--hhh----cc-CC
Q 028049            4 IPQQLIS--SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHG-SRG--VEN----FL-KF   73 (214)
Q Consensus         4 iP~~~i~--~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~-~~~--l~~----l~-~~   73 (214)
                      ||.+ ++  ++++|++|++++|...+-               ....+..+++|+.|+++... ...  ++.    +. .+
T Consensus       481 iP~~-l~f~~L~~L~~L~Ls~N~l~~~---------------iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~  544 (876)
T 4ecn_A          481 ENEE-LSWSNLKDLTDVELYNCPNMTQ---------------LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE  544 (876)
T ss_dssp             TTSC-CCGGGCTTCCEEEEESCTTCCS---------------CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCT
T ss_pred             CChh-hhhccCCCCCEEECcCCCCCcc---------------ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcc
Confidence            7876 66  999999999999976221               12345566777777776443 221  221    11 11


Q ss_pred             cchhccccEEeecCCCCCCchhh--hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCC
Q 028049           74 PKLQTITQALHIEDCNSLPLNLL--HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVF  150 (214)
Q Consensus        74 ~~l~~~l~~L~l~~c~~l~~l~~--~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~  150 (214)
                       .-.++|+.|+++++. +..++.  .+..+++|+.|+++++.+..++ ..    ..+++|+.|+++++ ++..+|. +..
T Consensus       545 -~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~----~~L~~L~~L~Ls~N-~l~~lp~~l~~  616 (876)
T 4ecn_A          545 -DTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF----GTNVKLTDLKLDYN-QIEEIPEDFCA  616 (876)
T ss_dssp             -TTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC----CTTSEESEEECCSS-CCSCCCTTSCE
T ss_pred             -cccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccch-hh----cCCCcceEEECcCC-ccccchHHHhh
Confidence             112367888887764 345654  5777788888888776565554 22    34677777887775 4556663 555


Q ss_pred             CCC-ccEEeEecCcccccc
Q 028049          151 APN-LKCLRILDCDDMEEI  168 (214)
Q Consensus       151 l~~-L~~L~i~~C~~l~~i  168 (214)
                      +++ |++|+++++. +..+
T Consensus       617 l~~~L~~L~Ls~N~-L~~l  634 (876)
T 4ecn_A          617 FTDQVEGLGFSHNK-LKYI  634 (876)
T ss_dssp             ECTTCCEEECCSSC-CCSC
T ss_pred             ccccCCEEECcCCC-CCcC
Confidence            666 7777777764 3344

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.77  E-value=4.4e-08  Score=86.25  Aligned_cols=129  Identities=13%  Similarity=0.120  Sum_probs=57.7

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-Ccc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-LTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-lp~--~~~l~~L  154 (214)
                      +.++.|+++++.--..++..+..+++|+.|+++++.+..++. .......+++|+.|+++++ ++.. +|.  ...+++|
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-IAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-HHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTC
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc-chHHHhhCCCCCEEECCCC-cCCcccccchhccCccC
Confidence            345566665543222122344555556666655544433210 0000123555555555554 3333 442  2334555


Q ss_pred             cEEeEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCccccccccCCC
Q 028049          155 KCLRILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGNASNLKAYVHR  210 (214)
Q Consensus       155 ~~L~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~~  210 (214)
                      ++|++++|.--..++.... ..+..       +..++..+..+++|++|+++++ +++.++..
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~  462 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDG  462 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTT
T ss_pred             CEEECcCCCCCcchhhhhc-ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHH
Confidence            5555555432111111000 00000       0122234457889999999887 46666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.77  E-value=1.4e-08  Score=89.85  Aligned_cols=140  Identities=14%  Similarity=0.159  Sum_probs=90.3

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      +.+||.+ +.  ++|++|++.+++..+.               ....+..+++|+.|+++-.....+.. ..+.. .++|
T Consensus        17 l~~ip~~-~~--~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~-l~~L   76 (549)
T 2z81_A           17 FTSIPSG-LT--AAMKSLDLSFNKITYI---------------GHGDLRACANLQVLILKSSRINTIEG-DAFYS-LGSL   76 (549)
T ss_dssp             CSSCCSC-CC--TTCCEEECCSSCCCEE---------------CSSTTSSCTTCCEEECTTSCCCEECT-TTTTT-CTTC
T ss_pred             ccccccc-CC--CCccEEECcCCccCcc---------------ChhhhhcCCcccEEECCCCCcCccCh-hhccc-cccC
Confidence            3567875 32  7899999999987321               12245667888888876444333221 00111 2468


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEE
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCL  157 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L  157 (214)
                      +.|+++++. +..++ ..+..+++|++|+++++.+..+...  .....+++|++|+++++..+..+|.  +..+++|++|
T Consensus        77 ~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A           77 EHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT--SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             CEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchh--hhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            889998863 44444 4477888899999888666543211  1123578899999988876777763  5668888888


Q ss_pred             eEecCc
Q 028049          158 RILDCD  163 (214)
Q Consensus       158 ~i~~C~  163 (214)
                      +++++.
T Consensus       154 ~L~~n~  159 (549)
T 2z81_A          154 EIKALS  159 (549)
T ss_dssp             EEEETT
T ss_pred             eccCCc
Confidence            888764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.77  E-value=1.7e-08  Score=93.53  Aligned_cols=112  Identities=16%  Similarity=0.072  Sum_probs=68.9

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc-ccCCCCCccE
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT-WLVFAPNLKC  156 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp-~~~~l~~L~~  156 (214)
                      +.++.|+++++.-...++..+..+++|++|++.++.+......+   ...+++|+.|++++|.--..+| ++..+++|++
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG---LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH---HhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            35677777776543344445666677777777775554221111   1247778888888774333555 3667788888


Q ss_pred             EeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049          157 LRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY  207 (214)
Q Consensus       157 L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i  207 (214)
                      |++++|.-...++               ..+..+++|+.|++.+++--..+
T Consensus       519 L~L~~N~l~~~~p---------------~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          519 LKLSNNSFSGNIP---------------AELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             EECCSSCCEEECC---------------GGGGGCTTCCEEECCSSEEESBC
T ss_pred             EECCCCcccCcCC---------------HHHcCCCCCCEEECCCCccCCcC
Confidence            8888774333332               25566788999999887644333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.76  E-value=2e-08  Score=79.63  Aligned_cols=135  Identities=14%  Similarity=0.156  Sum_probs=95.3

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +.  ++|++|++.++...+.               ....+..+++|+.|+++-.....++.-. + .-.+.|+
T Consensus        32 ~~ip~~-~~--~~L~~L~Ls~n~i~~~---------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~-~-~~l~~L~   91 (229)
T 3e6j_A           32 ASVPAG-IP--TNAQILYLHDNQITKL---------------EPGVFDSLINLKELYLGSNQLGALPVGV-F-DSLTQLT   91 (229)
T ss_dssp             SSCCSC-CC--TTCSEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred             CccCCC-CC--CCCCEEEcCCCccCcc---------------CHHHhhCccCCcEEECCCCCCCCcChhh-c-ccCCCcC
Confidence            567775 33  8999999999987322               1123566788888888755544433110 1 1135789


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|+.|++.++.+..++...    ..+++|+.|+++++ +++.++.  +..+++|+.|+
T Consensus        92 ~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           92 VLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI----ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG----GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCC-cCCccChhHhCcchhhCeEeccCCcccccCccc----ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEE
Confidence            9999886 556665 44678889999999997777765433    35899999999985 8888874  56789999999


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      +.+.
T Consensus       166 l~~N  169 (229)
T 3e6j_A          166 LFGN  169 (229)
T ss_dssp             CTTS
T ss_pred             eeCC
Confidence            9764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.76  E-value=1.8e-08  Score=83.29  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=71.5

Q ss_pred             CCChhhh-ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            3 EIPQQLI-SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         3 ~iP~~~i-~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      .+|...+ .++++|++|++++++..+.        .....   ...+..+++|+.|+++-.....+..- .+. -.+.++
T Consensus       106 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~--------~~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~-~l~~L~  172 (310)
T 4glp_A          106 TMPPLPLEATGLALSSLRLRNVSWATG--------RSWLA---ELQQWLKPGLKVLSIAQAHSPAFSCE-QVR-AFPALT  172 (310)
T ss_dssp             CCCCCSSSCCCBCCSSCEEESCCCSST--------TSSHH---HHHTTBCSCCCEEEEECCSSCCCCTT-SCC-CCTTCC
T ss_pred             chhhhhhhccCCCCCEEEeecccccch--------hhhhH---HHHhhhccCCCEEEeeCCCcchhhHH-Hhc-cCCCCC
Confidence            3454322 8899999999999987321        00000   11233566777777765444322210 011 124577


Q ss_pred             EEeecCCCCCCc--hh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC-cc-cCC---CC
Q 028049           82 ALHIEDCNSLPL--NL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL-TW-LVF---AP  152 (214)
Q Consensus        82 ~L~l~~c~~l~~--l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l-p~-~~~---l~  152 (214)
                      .|+++++.-...  ++  ..+..+++|++|+++++.+..++.........+++|++|+++++ ++..+ |. +..   ++
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCT
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcC
Confidence            777777642211  11  11245667777777665554332110000013466666666654 44444 31 222   25


Q ss_pred             CccEEeEecC
Q 028049          153 NLKCLRILDC  162 (214)
Q Consensus       153 ~L~~L~i~~C  162 (214)
                      +|++|+++++
T Consensus       252 ~L~~L~Ls~N  261 (310)
T 4glp_A          252 ALNSLNLSFA  261 (310)
T ss_dssp             TCCCEECCSS
T ss_pred             cCCEEECCCC
Confidence            6666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.76  E-value=2.2e-08  Score=83.06  Aligned_cols=168  Identities=14%  Similarity=0.055  Sum_probs=97.8

Q ss_pred             hccCcccceEEccccCcccccccccccc--cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeec
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV--LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIE   86 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~   86 (214)
                      +.++++|++|++.+|+..+.+.......  +....-..+ ....+++|+.|+++-.....+.... + .-.+.++.|+++
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~~~~~-~-~~l~~L~~L~Ls  152 (317)
T 3o53_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDLD-E-GCRSRVQYLDLK  152 (317)
T ss_dssp             ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSGGGBC-T-GGGSSEEEEECT
T ss_pred             hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCccchh-h-hccCCCCEEECC
Confidence            6789999999999998744331111000  000000000 0123456777776644444332211 1 123578889998


Q ss_pred             CCCCCCchh-hhc-ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049           87 DCNSLPLNL-LHL-ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD  163 (214)
Q Consensus        87 ~c~~l~~l~-~~l-~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~  163 (214)
                      ++ .+..+. ..+ ..+++|++|+++++.+..++..     ..+++|+.|+++++ +++.+|. +..+++|++|+++++ 
T Consensus       153 ~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-  224 (317)
T 3o53_A          153 LN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-  224 (317)
T ss_dssp             TS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-
T ss_pred             CC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-
Confidence            86 344432 223 4678889999888777766321     24788888988886 6777754 566788888888886 


Q ss_pred             ccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          164 DMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       164 ~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      .+..++.               .+..+++|+.|++.+.+
T Consensus       225 ~l~~l~~---------------~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          225 KLVLIEK---------------ALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CCCEECT---------------TCCCCTTCCEEECTTCC
T ss_pred             cccchhh---------------HhhcCCCCCEEEccCCC
Confidence            4544432               33445566666666544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.76  E-value=4.7e-08  Score=88.77  Aligned_cols=81  Identities=16%  Similarity=0.124  Sum_probs=39.2

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeeccc-cc----ccCCCCCccEEeeecCcCCccCcc--cCC
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDC-AG----EVQKMPKLHSVLIWNCSNVKDLTW--LVF  150 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~-~~----~~~~~~~L~~L~I~~C~~L~~lp~--~~~  150 (214)
                      .++.|+++++ .+..++ ..+..+++|+.|+++++.+..+.... .+    ....+++|+.|+++++ +++.+|.  +..
T Consensus       481 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~  558 (680)
T 1ziw_A          481 NLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKD  558 (680)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             CCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHccc
Confidence            4556666554 233333 23455556666666654444331100 00    0123556666666654 5555553  345


Q ss_pred             CCCccEEeEec
Q 028049          151 APNLKCLRILD  161 (214)
Q Consensus       151 l~~L~~L~i~~  161 (214)
                      +++|++|++++
T Consensus       559 l~~L~~L~Ls~  569 (680)
T 1ziw_A          559 LFELKIIDLGL  569 (680)
T ss_dssp             CTTCCEEECCS
T ss_pred             ccCcceeECCC
Confidence            56666666644

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.75  E-value=1.5e-08  Score=91.95  Aligned_cols=21  Identities=10%  Similarity=0.344  Sum_probs=16.4

Q ss_pred             CChhhhc--cCcccceEEccccCc
Q 028049            4 IPQQLIS--SFSKLQVLRMLHCGY   25 (214)
Q Consensus         4 iP~~~i~--~L~~Lq~L~l~~~~~   25 (214)
                      ||.. ++  ++++|++|++++|..
T Consensus       239 ip~~-l~~~~l~~L~~L~L~~n~l  261 (636)
T 4eco_A          239 KTED-LKWDNLKDLTDVEVYNCPN  261 (636)
T ss_dssp             TTSC-CCGGGCTTCCEEEEECCTT
T ss_pred             Cchh-hhhcccCCCCEEEecCCcC
Confidence            7765 77  888888888888865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.74  E-value=3.3e-08  Score=83.13  Aligned_cols=76  Identities=16%  Similarity=0.042  Sum_probs=43.9

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL  157 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L  157 (214)
                      .++.+.+.++..++.++ ..+..+++|+.|+++++.+..++.      ..|.+|++|.+.++.+++.+|.+..+++|+.+
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~------~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l  251 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS------YGLENLKKLRARSTYNLKKLPTLEKLVALMEA  251 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS------SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh------hhhccchHhhhccCCCcCcCCCchhCcChhhC
Confidence            45555665555555554 334556666666666655555432      12556666666666666666665556666666


Q ss_pred             eEe
Q 028049          158 RIL  160 (214)
Q Consensus       158 ~i~  160 (214)
                      ++.
T Consensus       252 ~l~  254 (350)
T 4ay9_X          252 SLT  254 (350)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.73  E-value=1.3e-08  Score=84.25  Aligned_cols=143  Identities=15%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             CCChhhh-ccCcccceEEccccCcccccccccccccchhhHhhhhhccC--CccCceeeEEecccchhh-hccCCcchhc
Q 028049            3 EIPQQLI-SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHC--LEQLNLITLSLHGSRGVE-NFLKFPKLQT   78 (214)
Q Consensus         3 ~iP~~~i-~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~--L~~L~~L~i~~~~~~~l~-~l~~~~~l~~   78 (214)
                      .+|..++ .++++|++|++.+++..+.|             ..+..+..  +++|+.|+++-.....+. ..+  . -.+
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~--~-~l~  173 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATRD-------------AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV--R-VFP  173 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSSS-------------SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC--C-CCS
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcchh-------------HHHHHHHHhhcCCCcEEEeeCCCCccchHHHh--c-cCC
Confidence            5677532 89999999999999884321             11222221  256666666644433322 110  1 123


Q ss_pred             cccEEeecCCCCCCc--hhhhc--ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCC
Q 028049           79 ITQALHIEDCNSLPL--NLLHL--ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFA  151 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~--l~~~l--~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l  151 (214)
                      .++.|+++++.-...  ++..+  ..+++|++|++.++.+..++.........+++|+.|+++++ ++...+   ....+
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWP  252 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCC
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhc
Confidence            566777766542221  11122  55666677666665444221100000013456666666654 444432   12335


Q ss_pred             CCccEEeEecC
Q 028049          152 PNLKCLRILDC  162 (214)
Q Consensus       152 ~~L~~L~i~~C  162 (214)
                      ++|++|+++++
T Consensus       253 ~~L~~L~Ls~N  263 (312)
T 1wwl_A          253 SQLNSLNLSFT  263 (312)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEECCCC
Confidence            56666666554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.73  E-value=3e-08  Score=89.96  Aligned_cols=69  Identities=14%  Similarity=0.206  Sum_probs=34.8

Q ss_pred             CCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHH-------HhhhcccCCCCCccCeeecCc
Q 028049          128 MPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIE-------VSEMMGELNLFSGLESLSLGN  200 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~-------~~~~~~~~~~f~~L~~L~l~~  200 (214)
                      +++|+.|+++++ +++.+|  ..+++|+.|+++++ ++..++..  ...+..       +..++..+..+++|+.|++.+
T Consensus       220 ~~~L~~L~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~~--~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          220 PSGLKELIVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred             CCCCCEEEccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCcc--cccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence            355666666554 555555  23456666666554 33333220  000000       012233456678888888887


Q ss_pred             cc
Q 028049          201 AS  202 (214)
Q Consensus       201 cp  202 (214)
                      ++
T Consensus       294 N~  295 (622)
T 3g06_A          294 NP  295 (622)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.72  E-value=4.3e-08  Score=84.67  Aligned_cols=24  Identities=21%  Similarity=0.263  Sum_probs=18.5

Q ss_pred             CCCChhhhccCcccceEEccccCc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      +.++.+.++++++|++|++.++..
T Consensus        43 ~~~~~~~~~~l~~L~~L~L~~n~~   66 (455)
T 3v47_A           43 AELNETSFSRLQDLQFLKVEQQTP   66 (455)
T ss_dssp             CEECTTTTSSCTTCCEEECCCCST
T ss_pred             CcCChhHhccCccccEEECcCCcc
Confidence            345444689999999999999865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.69  E-value=2.6e-08  Score=82.45  Aligned_cols=160  Identities=14%  Similarity=0.087  Sum_probs=106.9

Q ss_pred             CCChhhhccC-----cccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchh----hhccCC
Q 028049            3 EIPQQLISSF-----SKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGV----ENFLKF   73 (214)
Q Consensus         3 ~iP~~~i~~L-----~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l----~~l~~~   73 (214)
                      .+|. .++++     ++|++|++.+++..+.               ..+.+..+++|+.|+++-......    ..+ ..
T Consensus       135 ~~~~-~~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~  197 (312)
T 1wwl_A          135 TRDA-WLAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPALSTLDLSDNPELGERGLISAL-CP  197 (312)
T ss_dssp             SSSS-HHHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS-CT
T ss_pred             chhH-HHHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCCCEEECCCCCcCcchHHHHHH-Hh
Confidence            4454 46666     9999999999987332               123466778999998875443221    111 11


Q ss_pred             cchhccccEEeecCCCCCCchh----hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccC
Q 028049           74 PKLQTITQALHIEDCNSLPLNL----LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLV  149 (214)
Q Consensus        74 ~~l~~~l~~L~l~~c~~l~~l~----~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~  149 (214)
                      . -.+.++.|+++++ .+..++    ..+..+++|++|+++++.+......  .....+++|+.|+++++ +++.+|...
T Consensus       198 ~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~ip~~~  272 (312)
T 1wwl_A          198 L-KFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCDWPSQLNSLNLSFT-GLKQVPKGL  272 (312)
T ss_dssp             T-SCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCCCCTTCCEEECTTS-CCSSCCSSC
T ss_pred             c-cCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhhhcCCCCEEECCCC-ccChhhhhc
Confidence            1 2357899999987 445332    2235678999999998666654310  11124789999999987 788888532


Q ss_pred             CCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          150 FAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       150 ~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      . ++|++|+++++ .++.++                .+..+++|++|++.+-+
T Consensus       273 ~-~~L~~L~Ls~N-~l~~~p----------------~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          273 P-AKLSVLDLSYN-RLDRNP----------------SPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             C-SEEEEEECCSS-CCCSCC----------------CTTTSCEEEEEECTTCT
T ss_pred             c-CCceEEECCCC-CCCCCh----------------hHhhCCCCCEEeccCCC
Confidence            3 89999999886 454442                35678999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.69  E-value=5.4e-10  Score=100.44  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=74.4

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .++.|+++++ .+..++. +..+++|+.|+++++.+..++...    ..+++|+.|+++++ +++.+|.+..+++|+.|+
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL----AALRCLEVLQASDN-ALENVDGVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGG----GGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEE
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhh----hcCCCCCEEECCCC-CCCCCcccCCCCCCcEEE
Confidence            4778888875 5566653 777888888888887777665433    35888999999875 778888777888899998


Q ss_pred             EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049          159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY  207 (214)
Q Consensus       159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i  207 (214)
                      ++++ .+..++.             +..+..+++|+.|++++.+ +..+
T Consensus       515 Ls~N-~l~~~~~-------------p~~l~~l~~L~~L~L~~N~-l~~~  548 (567)
T 1dce_A          515 LCNN-RLQQSAA-------------IQPLVSCPRLVLLNLQGNS-LCQE  548 (567)
T ss_dssp             CCSS-CCCSSST-------------TGGGGGCTTCCEEECTTSG-GGGS
T ss_pred             CCCC-CCCCCCC-------------cHHHhcCCCCCEEEecCCc-CCCC
Confidence            8875 4444420             1244567778888887764 4433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.68  E-value=6.6e-08  Score=84.44  Aligned_cols=75  Identities=17%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEE
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCL  157 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L  157 (214)
                      +.++.|+++++ .+..++ .+..+++|++|+++++.+..++.       .+++|++|+++++ +++.+|.+..+++|++|
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~-------~~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD-------LPPSLEFIAAGNN-QLEELPELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSSCCCCTTCTTCCEE
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCC-------CcccccEEECcCC-cCCcCccccCCCCCCEE
Confidence            35666666654 333443 35566677777776655544321       1345666666654 45555544555556666


Q ss_pred             eEecC
Q 028049          158 RILDC  162 (214)
Q Consensus       158 ~i~~C  162 (214)
                      +++++
T Consensus       201 ~l~~N  205 (454)
T 1jl5_A          201 YADNN  205 (454)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.67  E-value=6.5e-08  Score=76.27  Aligned_cols=134  Identities=12%  Similarity=0.170  Sum_probs=90.9

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh--hccCCcchhcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE--NFLKFPKLQTI   79 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~--~l~~~~~l~~~   79 (214)
                      +.||.+ +.  ++|++|++.+++....+               .+.+..+++|+.|+++-.....+.  .+.   . .+.
T Consensus        24 ~~iP~~-l~--~~l~~L~l~~n~i~~i~---------------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~---~-l~~   81 (220)
T 2v9t_B           24 TEIPTN-LP--ETITEIRLEQNTIKVIP---------------PGAFSPYKKLRRIDLSNNQISELAPDAFQ---G-LRS   81 (220)
T ss_dssp             SSCCSS-CC--TTCCEEECCSSCCCEEC---------------TTSSTTCTTCCEEECCSSCCCEECTTTTT---T-CSS
T ss_pred             CcCCCc-cC--cCCCEEECCCCcCCCcC---------------HhHhhCCCCCCEEECCCCcCCCcCHHHhh---C-CcC
Confidence            567765 43  68999999999873221               123556678888887755444331  121   1 256


Q ss_pred             ccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccE
Q 028049           80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKC  156 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~  156 (214)
                      |+.|++++. .+..++ ..+..+++|+.|++.++.+..+....   ...+++|+.|+++++ +++.++.  +..+++|++
T Consensus        82 L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           82 LNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDA---FQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred             CCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH---cCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCE
Confidence            889999875 455665 34677889999999987777664322   135789999999885 7787764  556889999


Q ss_pred             EeEecC
Q 028049          157 LRILDC  162 (214)
Q Consensus       157 L~i~~C  162 (214)
                      |++.+.
T Consensus       157 L~L~~N  162 (220)
T 2v9t_B          157 MHLAQN  162 (220)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            998764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.67  E-value=3.6e-08  Score=87.41  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCC-ccCcc-cCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNV-KDLTW-LVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L-~~lp~-~~~l~~L~  155 (214)
                      .++.|+++++.-....+ ..+..+++|++|++.++.+.......   ...+++|+.|++.+|.-- ..+|. +..+++|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~  473 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  473 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT---TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh---hhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence            45566665543211111 23445566666666664443322111   124667777777766322 13442 45567777


Q ss_pred             EEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccCC
Q 028049          156 CLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYVH  209 (214)
Q Consensus       156 ~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~~  209 (214)
                      +|++++|. +..+.              +..+..+++|++|+++++ ++..+..
T Consensus       474 ~L~l~~n~-l~~~~--------------~~~~~~l~~L~~L~l~~n-~l~~~~~  511 (570)
T 2z63_A          474 FLDLSQCQ-LEQLS--------------PTAFNSLSSLQVLNMASN-QLKSVPD  511 (570)
T ss_dssp             EEECTTSC-CCEEC--------------TTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             EEECCCCc-cccCC--------------hhhhhcccCCCEEeCCCC-cCCCCCH
Confidence            77777663 22221              125567889999999887 4555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.66  E-value=8.7e-08  Score=83.67  Aligned_cols=140  Identities=14%  Similarity=0.177  Sum_probs=77.7

Q ss_pred             CCCChhhhccCcccceEEccccCccccccccccc---ccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGK---VLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQT   78 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~---~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~   78 (214)
                      +.||.  ++++++|++|++.+++..+.|......   .+....-..+.++..+++|+.|+++......++..      ..
T Consensus       144 ~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~------~~  215 (454)
T 1jl5_A          144 EKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL------PL  215 (454)
T ss_dssp             SSCCC--CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC------CT
T ss_pred             CCCcc--cCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC------cC
Confidence            45773  888999999999998875544322110   01111111133456667777777664443332222      24


Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .++.|+++++ .+..++ .+..+++|++|+++++.+..++.       .+++|+.|+++++ +++.+|..  +++|++|+
T Consensus       216 ~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~-------~~~~L~~L~l~~N-~l~~l~~~--~~~L~~L~  283 (454)
T 1jl5_A          216 SLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNLLKTLPD-------LPPSLEALNVRDN-YLTDLPEL--PQSLTFLD  283 (454)
T ss_dssp             TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCS-------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEE
T ss_pred             cccEEECcCC-cCCccc-ccCCCCCCCEEECCCCcCCcccc-------cccccCEEECCCC-cccccCcc--cCcCCEEE
Confidence            6888888876 444554 46677788888887755554431       2345566665554 34444421  24444444


Q ss_pred             Eec
Q 028049          159 ILD  161 (214)
Q Consensus       159 i~~  161 (214)
                      +++
T Consensus       284 ls~  286 (454)
T 1jl5_A          284 VSE  286 (454)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.65  E-value=4.4e-08  Score=76.15  Aligned_cols=136  Identities=14%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +  .++|++|++.+++..+.+               .+.+..+++|+.|+++-.....++.-. + .-.+.++
T Consensus        20 ~~~p~~-~--~~~l~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~   79 (208)
T 2o6s_A           20 TSVPTG-I--PAQTTYLDLETNSLKSLP---------------NGVFDELTSLTQLYLGGNKLQSLPNGV-F-NKLTSLT   79 (208)
T ss_dssp             SSCCSC-C--CTTCSEEECCSSCCCCCC---------------TTTTTTCTTCSEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred             cCCCCC-C--CCCCcEEEcCCCccCcCC---------------hhhhcccccCcEEECCCCccCccChhh-c-CCCCCcC
Confidence            456654 2  468999999999873221               112456688888888754443332110 1 1135789


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|+++++ .+..++ ..+..+++|++|++.++.+..++...   ...+++|+.|+++++ +++.++.  +..+++|++|+
T Consensus        80 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           80 YLNLSTN-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGV---FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             EEECCCC-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhH---hccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence            9999886 455554 34678899999999987777664321   135899999999986 7787764  56789999999


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      +.++
T Consensus       155 l~~N  158 (208)
T 2o6s_A          155 LHDN  158 (208)
T ss_dssp             CCSC
T ss_pred             ecCC
Confidence            9885

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.62  E-value=3.9e-08  Score=81.23  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=105.6

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccC--CcchhccccEEeec
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLK--FPKLQTITQALHIE   86 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~--~~~l~~~l~~L~l~   86 (214)
                      +..+++|++|++.+|+..+.               ....+..+++|+.|+++.........+..  ...-.+.++.|+++
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAF---------------SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCC---------------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             hhhccCCCEEEeeCCCcchh---------------hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence            46799999999999987321               12346677899999987554433211111  11123578999999


Q ss_pred             CCCCCCchhh----hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecC
Q 028049           87 DCNSLPLNLL----HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDC  162 (214)
Q Consensus        87 ~c~~l~~l~~----~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C  162 (214)
                      ++ +++.++.    .+..+++|++|+++++.+..+.....+....+++|++|+++++ +++.+|... .++|++|+++++
T Consensus       206 ~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N  282 (310)
T 4glp_A          206 NT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSN  282 (310)
T ss_dssp             SS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSC
T ss_pred             CC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCC
Confidence            87 4555541    2467789999999997776652111111122479999999886 788888622 489999999886


Q ss_pred             cccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          163 DDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       163 ~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                       .+..++                ....+++|+.|++.+-+
T Consensus       283 -~l~~~~----------------~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          283 -RLNRAP----------------QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             -CCCSCC----------------CTTSCCCCSCEECSSTT
T ss_pred             -cCCCCc----------------hhhhCCCccEEECcCCC
Confidence             344332                23567999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.61  E-value=9.1e-08  Score=84.24  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=72.4

Q ss_pred             hccCcccceEEccccCcccccccccccc--cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeec
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKV--LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIE   86 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~   86 (214)
                      ++++++|++|++++|...+.+.......  +....-..+ ....+++|+.|+++......+...  .-.-.+.|+.|+++
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls  152 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLK  152 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCE-EECCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECT
T ss_pred             cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCC-CccccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECC
Confidence            6788999999999987744432111000  000000000 012245666666654433332211  00113467777777


Q ss_pred             CCCCCCch-hhhcc-cccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEEeEecC
Q 028049           87 DCNSLPLN-LLHLA-NMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDC  162 (214)
Q Consensus        87 ~c~~l~~l-~~~l~-~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C  162 (214)
                      ++. +... +..+. .+++|++|+++++.+..++..     ..+++|+.|+++++ ++..+|. +..+++|+.|+++++
T Consensus       153 ~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          153 LNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             TSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS
T ss_pred             CCC-CCCcChHHHhhhCCcccEEecCCCcccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC
Confidence            653 3332 22332 566777777777555554311     13666666666664 4555543 445566666666653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.61  E-value=1.2e-07  Score=86.04  Aligned_cols=26  Identities=12%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             CCCCChhhhccCcccceEEccccCcc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYA   26 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~   26 (214)
                      +..||.++++++++|++|++.+++..
T Consensus        85 l~~l~~~~~~~l~~L~~L~L~~n~l~  110 (680)
T 1ziw_A           85 LSQLSDKTFAFCTNLTELHLMSNSIQ  110 (680)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred             cCccChhhhccCCCCCEEECCCCccC
Confidence            35678777888888888888888763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.59  E-value=2.4e-07  Score=84.04  Aligned_cols=15  Identities=7%  Similarity=0.138  Sum_probs=8.5

Q ss_pred             cccceEEccccCccc
Q 028049           13 SKLQVLRMLHCGYAH   27 (214)
Q Consensus        13 ~~Lq~L~l~~~~~~~   27 (214)
                      ++|++|++.+|....
T Consensus        61 ~~L~~L~L~~N~l~~   75 (622)
T 3g06_A           61 AHITTLVIPDNNLTS   75 (622)
T ss_dssp             TTCSEEEECSCCCSC
T ss_pred             CCCcEEEecCCCCCC
Confidence            556666666665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.59  E-value=1.8e-07  Score=72.68  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=42.9

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      +.++.|+++++ .+..++ ..+..+++|++|+++++.+..++...   ...+++|+.|+++++ +++.++.  +..+++|
T Consensus        52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           52 TSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV---FDKLTQLKELALNTN-QLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             ccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhH---hcCccCCCEEEcCCC-cCcccCHhHhccCCcC
Confidence            35666666653 333443 23455666666666665555443211   123566666666654 5555543  3456666


Q ss_pred             cEEeEecC
Q 028049          155 KCLRILDC  162 (214)
Q Consensus       155 ~~L~i~~C  162 (214)
                      ++|+++++
T Consensus       127 ~~L~l~~N  134 (208)
T 2o6s_A          127 KDLRLYQN  134 (208)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            66666664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.56  E-value=4.6e-07  Score=84.72  Aligned_cols=23  Identities=13%  Similarity=0.275  Sum_probs=13.6

Q ss_pred             CCChhhhccCcccceEEccccCc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      .|+++.++++++|++|++.+|+.
T Consensus        63 ~i~~~~f~~L~~L~~L~Ls~N~l   85 (844)
T 3j0a_A           63 TIDKEAFRNLPNLRILDLGSSKI   85 (844)
T ss_dssp             EECTTTTSSCTTCCEEECTTCCC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcC
Confidence            34444466666666666666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.54  E-value=1.5e-07  Score=70.67  Aligned_cols=61  Identities=25%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEecC
Q 028049           98 LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDC  162 (214)
Q Consensus        98 l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C  162 (214)
                      +..+++|++|+++++.+.......   ...+++|+.|++++| +++.++   .+..+++|++|+++++
T Consensus        67 ~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           67 LPKLPKLKKLELSENRIFGGLDML---AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             CCCCSSCCEEEEESCCCCSCCCHH---HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             hccCCCCCEEECcCCcCchHHHHH---HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC
Confidence            344455555555553333311000   012555666666554 455543   2344556666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.48  E-value=1.9e-07  Score=78.92  Aligned_cols=142  Identities=15%  Similarity=0.188  Sum_probs=93.4

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEecccchhhhccCCcchhccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      +.||.+ +.  +++++|++.+++..+.+               .+.+. .+.+|+.|+++-.....++.- .+.. .+.|
T Consensus        31 ~~iP~~-~~--~~l~~L~Ls~N~l~~l~---------------~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~-l~~L   90 (361)
T 2xot_A           31 PNVPQS-LP--SYTALLDLSHNNLSRLR---------------AEWTPTRLTNLHSLLLSHNHLNFISSE-AFVP-VPNL   90 (361)
T ss_dssp             SSCCSS-CC--TTCSEEECCSSCCCEEC---------------TTSSSSCCTTCCEEECCSSCCCEECTT-TTTT-CTTC
T ss_pred             CccCcc-CC--CCCCEEECCCCCCCccC---------------hhhhhhcccccCEEECCCCcCCccChh-hccC-CCCC
Confidence            467765 32  45889999999873321               11233 667888888765544443310 0111 2478


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-c----CCCCCc
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-L----VFAPNL  154 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~----~~l~~L  154 (214)
                      +.|++++. .+..++ ..+..+++|+.|+++++.+..+....   ...+++|+.|+++++ +++.+|. .    ..+++|
T Consensus        91 ~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           91 RYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA---FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTC
T ss_pred             CEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH---hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcC
Confidence            99999885 466665 45778889999999987777664322   235889999999986 8888875 2    358999


Q ss_pred             cEEeEecCccccccc
Q 028049          155 KCLRILDCDDMEEII  169 (214)
Q Consensus       155 ~~L~i~~C~~l~~i~  169 (214)
                      +.|++++. .+..++
T Consensus       166 ~~L~L~~N-~l~~l~  179 (361)
T 2xot_A          166 MLLDLSSN-KLKKLP  179 (361)
T ss_dssp             CEEECCSS-CCCCCC
T ss_pred             CEEECCCC-CCCccC
Confidence            99999875 455443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.47  E-value=2.2e-08  Score=85.14  Aligned_cols=17  Identities=18%  Similarity=0.397  Sum_probs=14.5

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +.++++|++|++++++.
T Consensus        90 l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HTTCTTCCEEECCSCCC
T ss_pred             HhhCCcccEEECCCCcC
Confidence            47889999999999887

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.46  E-value=7.6e-08  Score=70.80  Aligned_cols=61  Identities=28%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             hcccccccchhhccccccce-eecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCccEEeEecC
Q 028049           97 HLANMEHLEKLFIEESNLED-WNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDC  162 (214)
Q Consensus        97 ~l~~l~~L~~L~i~~~~l~~-l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C  162 (214)
                      .+..+++|++|+++++.+.. ++...    ..+++|+.|+++++ +++.++   .+..+++|++|+++++
T Consensus        59 ~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N  123 (149)
T 2je0_A           59 NLPKLNKLKKLELSDNRVSGGLEVLA----EKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC  123 (149)
T ss_dssp             TCCCCTTCCEEECCSSCCCSCTHHHH----HHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred             hhhcCCCCCEEECCCCcccchHHHHh----hhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC
Confidence            34445556666665544443 21111    12566666666665 455542   2455666777777665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.45  E-value=2.9e-07  Score=82.14  Aligned_cols=136  Identities=14%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      .+||.+ |.  +++++|++++++....+               -..+..+++|+.|+++-..+..++.- .+.. .++|+
T Consensus        44 ~~vP~~-lp--~~~~~LdLs~N~i~~l~---------------~~~f~~l~~L~~L~Ls~N~i~~i~~~-~f~~-L~~L~  103 (635)
T 4g8a_A           44 YKIPDN-LP--FSTKNLDLSFNPLRHLG---------------SYSFFSFPELQVLDLSRCEIQTIEDG-AYQS-LSHLS  103 (635)
T ss_dssp             SSCCSS-SC--TTCCEEECTTSCCCEEC---------------TTTTTTCTTCCEEECTTCCCCEECTT-TTTT-CTTCC
T ss_pred             CccCCC-CC--cCCCEEEeeCCCCCCCC---------------HHHHhCCCCCCEEECCCCcCCCcChh-HhcC-CCCCC
Confidence            356654 22  36788888887763221               12345567777777664433333210 0111 24677


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccC--cc-cCCCCCccEE
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--TW-LVFAPNLKCL  157 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p~-~~~l~~L~~L  157 (214)
                      .|+|+++ .++.++ ..+.++++|++|++.++++..++...   ...+++|+.|+++++ +++.+  |. ...+++|++|
T Consensus       104 ~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A          104 TLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             EEECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC---CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEE
T ss_pred             EEEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh---hhcCcccCeeccccC-ccccCCCchhhccchhhhhh
Confidence            7888775 455555 44677777888887776666553221   134777888888775 45544  22 4457778888


Q ss_pred             eEecC
Q 028049          158 RILDC  162 (214)
Q Consensus       158 ~i~~C  162 (214)
                      +++++
T Consensus       179 ~L~~N  183 (635)
T 4g8a_A          179 DLSSN  183 (635)
T ss_dssp             ECCSS
T ss_pred             cccCc
Confidence            77765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.41  E-value=4.7e-07  Score=80.79  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=68.4

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      +.++.|+++++.....+. ..+..+++|++|+++++++..+....   ...+++|+.|+++++ +++.++.  +..+++|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA---FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTC
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH---HcCCCCCCEEECCCC-cCCCCChhHHhCCCCC
Confidence            457778887765443322 34667778888888887777664322   135778888888875 6777753  5567888


Q ss_pred             cEEeEecCcccccccccccchhhHHHhhhcccCCCC-CccCeeecCccc
Q 028049          155 KCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLF-SGLESLSLGNAS  202 (214)
Q Consensus       155 ~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f-~~L~~L~l~~cp  202 (214)
                      ++|+++++ ++..++.              ..+..+ ++|+.|++.+-|
T Consensus       545 ~~L~Ls~N-~l~~~~~--------------~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          545 QVLDYSLN-HIMTSKK--------------QELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CEEECTTS-CCCBCCS--------------SCTTCCCTTCCEEECTTCC
T ss_pred             CEEECCCC-cCCCCCH--------------HHHHhhhCcCCEEEeeCCC
Confidence            88888775 3433322              134444 578888887644

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.41  E-value=9.4e-08  Score=72.49  Aligned_cols=131  Identities=11%  Similarity=0.090  Sum_probs=77.4

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCc-cCceeeEEecccchhhhccCCcchhccccEEeecC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLE-QLNLITLSLHGSRGVENFLKFPKLQTITQALHIED   87 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~-~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~   87 (214)
                      ..+..+|++|++.++.....                 +.+..+. +|+.|+++......++.+..    .+.++.|++++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-----------------~~~~~~~~~L~~L~Ls~N~l~~~~~l~~----l~~L~~L~Ls~   73 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-----------------ENLGATLDQFDAIDFSDNEIRKLDGFPL----LRRLKTLLVNN   73 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-----------------CCGGGGTTCCSEEECCSSCCCEECCCCC----CSSCCEEECCS
T ss_pred             cCCcCCceEEEeeCCCCchh-----------------HHhhhcCCCCCEEECCCCCCCccccccc----CCCCCEEECCC
Confidence            45678899999999977221                 1233333 77777776555444422221    24677788877


Q ss_pred             CCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCCCCccEEeEec
Q 028049           88 CNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFAPNLKCLRILD  161 (214)
Q Consensus        88 c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l~~L~~L~i~~  161 (214)
                      + .+..++ ..+..+++|++|+++++.+..++.  ......+++|+.|.++++ .+..+|.     +..+|+|+.|++++
T Consensus        74 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           74 N-RICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             S-CCCEECSCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             C-cccccCcchhhcCCCCCEEECCCCcCCcchh--hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCc
Confidence            5 345554 223566777888777765555432  001124777888888776 4455553     44567777777766


Q ss_pred             Ccc
Q 028049          162 CDD  164 (214)
Q Consensus       162 C~~  164 (214)
                      +..
T Consensus       150 n~~  152 (176)
T 1a9n_A          150 VKL  152 (176)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.41  E-value=1e-06  Score=69.62  Aligned_cols=129  Identities=13%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049           52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK  130 (214)
Q Consensus        52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~  130 (214)
                      .+|+.|+++......+..- .+.. .+.|+.|+++++ .+..++ ..+..+++|+.|+++++.+..++....   ..+++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~-~~~~-l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~---~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPG-VFDS-LINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF---DRLVH  113 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTTT-CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTT
T ss_pred             CCCCEEEcCCCccCccCHH-HhhC-ccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHh---Ccchh
Confidence            6778887765544433210 0111 256889999885 355555 446778899999998877776643221   35889


Q ss_pred             ccEEeeecCcCCccCcc-cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          131 LHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       131 L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      |+.|.++++ +++.+|. +..+++|++|+++++ ++..++.              ..+..+++|+.|++.+-|
T Consensus       114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~--------------~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPH--------------GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCT--------------TTTTTCTTCCEEECTTSC
T ss_pred             hCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCH--------------HHHhCCCCCCEEEeeCCC
Confidence            999999875 7888874 667899999999885 5554432              145667889999988755

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.40  E-value=2.1e-07  Score=69.76  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=91.2

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      ...++|++|++.+|....              ......+..+++|+.|+++-.....+..+   .. .++++.|+++++.
T Consensus        21 ~~~~~L~~L~l~~n~l~~--------------~~i~~~~~~l~~L~~L~l~~n~l~~~~~~---~~-l~~L~~L~Ls~N~   82 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSND--------------GKIEGLTAEFVNLEFLSLINVGLISVSNL---PK-LPKLKKLELSENR   82 (168)
T ss_dssp             SCTTSCSEEECCSCBCBT--------------TBCSSCCGGGGGCCEEEEESSCCCCCSSC---CC-CSSCCEEEEESCC
T ss_pred             CCcccCCEEECCCCCCCh--------------hhHHHHHHhCCCCCEEeCcCCCCCChhhh---cc-CCCCCEEECcCCc
Confidence            345889999999998730              00011245568899999886655544222   22 3578999999875


Q ss_pred             CCCc-hhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-----cCCCCCccEEeEecCc
Q 028049           90 SLPL-NLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-----LVFAPNLKCLRILDCD  163 (214)
Q Consensus        90 ~l~~-l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-----~~~l~~L~~L~i~~C~  163 (214)
                      - .. ++..+..+++|++|++.++.+..++..  .....+++|+.|+++++ .+..+|.     +..+++|++|++.+|.
T Consensus        83 l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           83 I-FGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             C-CSCCCHHHHHCTTCCEEECBSSSCCSSGGG--GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             C-chHHHHHHhhCCCCCEEeccCCccCcchhH--HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            3 33 444455688999999998777665320  11246899999999987 6677653     5678999999999985


Q ss_pred             c
Q 028049          164 D  164 (214)
Q Consensus       164 ~  164 (214)
                      .
T Consensus       159 ~  159 (168)
T 2ell_A          159 D  159 (168)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.38  E-value=4.9e-07  Score=84.52  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=84.7

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEeccc-chh-hhccCCcchhcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGS-RGV-ENFLKFPKLQTI   79 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~-~~l-~~l~~~~~l~~~   79 (214)
                      ..||.    -.++|++|+++++...+.               ....+..+++|+.|+++.... ..+ +..  +.. .++
T Consensus        17 ~~vP~----lp~~l~~LdLs~N~i~~i---------------~~~~~~~l~~L~~LdLs~n~~~~~i~~~~--f~~-L~~   74 (844)
T 3j0a_A           17 TQVPQ----VLNTTERLLLSFNYIRTV---------------TASSFPFLEQLQLLELGSQYTPLTIDKEA--FRN-LPN   74 (844)
T ss_dssp             SCCCS----SCTTCCEEEEESCCCCEE---------------CSSSCSSCCSCSEEEECTTCCCCEECTTT--TSS-CTT
T ss_pred             CCCCC----CCCCcCEEECCCCcCCcc---------------ChhHCcccccCeEEeCCCCCCccccCHHH--hcC-CCC
Confidence            34665    357889999999877221               123466778888888864321 111 110  111 246


Q ss_pred             ccEEeecCCCCCCch-hhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc---ccCCCCCcc
Q 028049           80 TQALHIEDCNSLPLN-LLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT---WLVFAPNLK  155 (214)
Q Consensus        80 l~~L~l~~c~~l~~l-~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp---~~~~l~~L~  155 (214)
                      |+.|+++++. +..+ +..+..+++|++|+++++.+...... .+....+++|+.|+++++ ++..++   .+..+++|+
T Consensus        75 L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           75 LRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             CCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCST-TCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCC
T ss_pred             CCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCccccc-CccccccCCCCEEECCCC-cccccccchhHhhCCCCC
Confidence            8888888764 3444 35677888899998888665542111 011235888999999886 555552   256788899


Q ss_pred             EEeEecC
Q 028049          156 CLRILDC  162 (214)
Q Consensus       156 ~L~i~~C  162 (214)
                      +|+++++
T Consensus       152 ~L~Ls~N  158 (844)
T 3j0a_A          152 SIDFSSN  158 (844)
T ss_dssp             EEEEESS
T ss_pred             EEECCCC
Confidence            9998885

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.37  E-value=2e-07  Score=78.68  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=95.0

Q ss_pred             CCCChhhhc-cCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            2 SEIPQQLIS-SFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         2 ~~iP~~~i~-~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ..+|.+.+. ++++|++|++.+++....+               .+.+..+++|+.|+++......+..- .+.. ...|
T Consensus        52 ~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---------------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~-l~~L  114 (361)
T 2xot_A           52 SRLRAEWTPTRLTNLHSLLLSHNHLNFIS---------------SEAFVPVPNLRYLDLSSNHLHTLDEF-LFSD-LQAL  114 (361)
T ss_dssp             CEECTTSSSSCCTTCCEEECCSSCCCEEC---------------TTTTTTCTTCCEEECCSSCCCEECTT-TTTT-CTTC
T ss_pred             CccChhhhhhcccccCEEECCCCcCCccC---------------hhhccCCCCCCEEECCCCcCCcCCHH-HhCC-CcCC
Confidence            456666666 9999999999999873321               12356678888988876554443321 0111 3578


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCC--cc
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPN--LK  155 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~--L~  155 (214)
                      +.|+++++ .+..+. ..+..+++|++|++.++.+..++.........+++|+.|++++. +++.+|.  +..+++  ++
T Consensus       115 ~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          115 EVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             CEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHT
T ss_pred             CEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcc
Confidence            99999886 445543 56788899999999998887765432111135899999999985 7888874  445665  47


Q ss_pred             EEeEec
Q 028049          156 CLRILD  161 (214)
Q Consensus       156 ~L~i~~  161 (214)
                      .|++.+
T Consensus       193 ~l~l~~  198 (361)
T 2xot_A          193 GLYLHN  198 (361)
T ss_dssp             TEECCS
T ss_pred             eEEecC
Confidence            788876

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.37  E-value=8.9e-08  Score=81.32  Aligned_cols=17  Identities=18%  Similarity=0.087  Sum_probs=14.7

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +.++++|++|++.+|..
T Consensus        56 l~~~~~L~~L~Ls~~~~   72 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFT   72 (386)
T ss_dssp             TTTCTTCCEEECCSCCT
T ss_pred             HHhCCCccEEeCccccc
Confidence            67899999999999854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.36  E-value=1.6e-06  Score=68.13  Aligned_cols=137  Identities=15%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.||.+ +  ...+++|++.+++....+           .   -+.+..+++|+.|+++-.....++.- .+.. .+.++
T Consensus        24 ~~iP~~-~--~~~~~~L~L~~N~l~~~~-----------~---~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~-l~~L~   84 (220)
T 2v70_A           24 NKIPEH-I--PQYTAELRLNNNEFTVLE-----------A---TGIFKKLPQLRKINFSNNKITDIEEG-AFEG-ASGVN   84 (220)
T ss_dssp             SSCCSC-C--CTTCSEEECCSSCCCEEC-----------C---CCCGGGCTTCCEEECCSSCCCEECTT-TTTT-CTTCC
T ss_pred             ccCccC-C--CCCCCEEEcCCCcCCccC-----------c---hhhhccCCCCCEEECCCCcCCEECHH-HhCC-CCCCC
Confidence            456764 3  235688888888773220           0   01245567788888765444433310 0111 25688


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .|++++. .+..++ ..+..+++|++|+++++.+..+....   ...+++|+.|+++++ +++.++.  +..+++|++|+
T Consensus        85 ~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  159 (220)
T 2v70_A           85 EILLTSN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS---FIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLN  159 (220)
T ss_dssp             EEECCSS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS---STTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEE
T ss_pred             EEECCCC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH---cCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEE
Confidence            8999875 445544 45778889999999887777663221   135789999999885 7777742  66788999999


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      +.+.
T Consensus       160 L~~N  163 (220)
T 2v70_A          160 LLAN  163 (220)
T ss_dssp             CCSC
T ss_pred             ecCc
Confidence            8774

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.36  E-value=9.4e-07  Score=79.41  Aligned_cols=156  Identities=12%  Similarity=0.117  Sum_probs=84.6

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ..||.+ +  .++|++|+++++.....|                   ..+++|+.|+++......++.+      ...|+
T Consensus        72 ~~lp~~-l--~~~L~~L~Ls~N~l~~ip-------------------~~l~~L~~L~Ls~N~l~~ip~l------~~~L~  123 (571)
T 3cvr_A           72 SSLPDN-L--PPQITVLEITQNALISLP-------------------ELPASLEYLDACDNRLSTLPEL------PASLK  123 (571)
T ss_dssp             SCCCSC-C--CTTCSEEECCSSCCSCCC-------------------CCCTTCCEEECCSSCCSCCCCC------CTTCC
T ss_pred             CccCHh-H--cCCCCEEECcCCCCcccc-------------------cccCCCCEEEccCCCCCCcchh------hcCCC
Confidence            457765 3  378999999999873221                   2246677777665444443331      12677


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEec
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILD  161 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~  161 (214)
                      .|+++++ .+..++.   .+++|+.|+++++.+..++.       .+++|+.|+++++ +++.+|.+  .++|+.|++++
T Consensus       124 ~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N-~L~~lp~l--~~~L~~L~Ls~  189 (571)
T 3cvr_A          124 HLDVDNN-QLTMLPE---LPALLEYINADNNQLTMLPE-------LPTSLEVLSVRNN-QLTFLPEL--PESLEALDVST  189 (571)
T ss_dssp             EEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCS
T ss_pred             EEECCCC-cCCCCCC---cCccccEEeCCCCccCcCCC-------cCCCcCEEECCCC-CCCCcchh--hCCCCEEECcC
Confidence            7777664 3344432   45667777776655554431       2556666666665 45555551  25666666665


Q ss_pred             Ccccccccccccchhh-------HH-------HhhhcccCCCCCccCeeecCccc
Q 028049          162 CDDMEEIISVENFEKL-------IE-------VSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       162 C~~l~~i~~~~~~~~l-------~~-------~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      + .+..++. -.. .+       ..       +..++..+..+++|+.|++.+.+
T Consensus       190 N-~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          190 N-LLESLPA-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             S-CCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             C-CCCchhh-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            4 3333322 000 11       10       01223344457788888887765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.35  E-value=1.4e-06  Score=77.53  Aligned_cols=137  Identities=12%  Similarity=0.092  Sum_probs=94.9

Q ss_pred             CChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch-hhhccCCcchhccccE
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG-VENFLKFPKLQTITQA   82 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~l~~   82 (214)
                      +|. .++++++|++|++.+++..+.+             .....+..+++|+.|+++-..... ++.-. +. ..+.++.
T Consensus       369 ~~~-~~~~l~~L~~L~L~~N~l~~~~-------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~-~l~~L~~  432 (562)
T 3a79_B          369 VFQ-GCSTLKRLQTLILQRNGLKNFF-------------KVALMTKNMSSLETLDVSLNSLNSHAYDRT-CA-WAESILV  432 (562)
T ss_dssp             TTT-TCCSCSSCCEEECCSSCCCBTT-------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCC-CC-CCTTCCE
T ss_pred             hhh-hhcccCCCCEEECCCCCcCCcc-------------cchhhhcCCCCCCEEECCCCcCCCccChhh-hc-CcccCCE
Confidence            454 4899999999999999873321             112346677889998887544433 32110 11 1357899


Q ss_pred             EeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEe
Q 028049           83 LHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRIL  160 (214)
Q Consensus        83 L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~  160 (214)
                      |+++++.--...+..++  ++|+.|+++++.+..++...    ..+++|+.|+++++ +++.+|.  +..+++|++|+++
T Consensus       433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~----~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDV----THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTT----TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECC
T ss_pred             EECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhh----cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEec
Confidence            99998753222222222  68999999998887765433    25899999999986 7888985  6678999999998


Q ss_pred             cCc
Q 028049          161 DCD  163 (214)
Q Consensus       161 ~C~  163 (214)
                      +.+
T Consensus       506 ~N~  508 (562)
T 3a79_B          506 DNP  508 (562)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            863

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.34  E-value=6.6e-07  Score=70.40  Aligned_cols=118  Identities=14%  Similarity=0.137  Sum_probs=83.1

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ++.||.+.+.++++|++|++.+++....               ..+.+..+++|+.|+++......++.-. +. -.+.|
T Consensus        44 i~~i~~~~~~~l~~L~~L~Ls~N~i~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-f~-~l~~L  106 (220)
T 2v9t_B           44 IKVIPPGAFSPYKKLRRIDLSNNQISEL---------------APDAFQGLRSLNSLVLYGNKITELPKSL-FE-GLFSL  106 (220)
T ss_dssp             CCEECTTSSTTCTTCCEEECCSSCCCEE---------------CTTTTTTCSSCCEEECCSSCCCCCCTTT-TT-TCTTC
T ss_pred             CCCcCHhHhhCCCCCCEEECCCCcCCCc---------------CHHHhhCCcCCCEEECCCCcCCccCHhH-cc-CCCCC
Confidence            3567777799999999999999987321               1234667788999988766555443211 11 13578


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      +.|++++. .+..+. ..+..+++|+.|++.++.+..+....   ...+++|+.|++.+.
T Consensus       107 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          107 QLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT---FSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSS
T ss_pred             CEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH---HhCCCCCCEEEeCCC
Confidence            99999885 445553 56778899999999998887765332   235889999999864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.30  E-value=2.2e-08  Score=77.49  Aligned_cols=17  Identities=12%  Similarity=0.157  Sum_probs=9.6

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      ++++++|++|++.+++.
T Consensus        44 ~~~l~~L~~L~ls~n~l   60 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNI   60 (198)
T ss_dssp             HHHTTTCSEEECSEEEE
T ss_pred             HhcCCCCCEEECCCCCC
Confidence            55555555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.29  E-value=5.2e-07  Score=80.37  Aligned_cols=136  Identities=14%  Similarity=0.111  Sum_probs=76.2

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEee
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHI   85 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l   85 (214)
                      ++..+++|++|++.+|...              ......-+..+++|+.|++. ....  .++.+.   .-.++|+.|++
T Consensus       288 ~~~~~~~L~~L~Ls~~~l~--------------~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L  349 (592)
T 3ogk_B          288 LFPFAAQIRKLDLLYALLE--------------TEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRI  349 (592)
T ss_dssp             GGGGGGGCCEEEETTCCCC--------------HHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEE
T ss_pred             HHhhcCCCcEEecCCCcCC--------------HHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEe
Confidence            3567778888888887641              11112235667888888886 2221  122221   11246889999


Q ss_pred             cC----------CCCCCchh--hhcccccccchhhccccccceeecccccccCCCCCccEEeeec---CcCCccCcc---
Q 028049           86 ED----------CNSLPLNL--LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWN---CSNVKDLTW---  147 (214)
Q Consensus        86 ~~----------c~~l~~l~--~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~---C~~L~~lp~---  147 (214)
                      ++          |..+....  .....+++|++|+++.+++..-.....  ...+++|++|.+.+   |+++...|.   
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            85          77765432  223446788888874444432111000  11367788888873   556665421   


Q ss_pred             ----cCCCCCccEEeEecCc
Q 028049          148 ----LVFAPNLKCLRILDCD  163 (214)
Q Consensus       148 ----~~~l~~L~~L~i~~C~  163 (214)
                          ...+++|++|++++|.
T Consensus       428 ~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          428 VRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHHHHHHCTTCCEEEEECCG
T ss_pred             HHHHHHhCCCCCEEEEecCC
Confidence                2346778888876654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.29  E-value=4.8e-07  Score=68.50  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049           48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK  127 (214)
Q Consensus        48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~  127 (214)
                      .....+|+.|+++......++.+   ....+.++.|+++++ .+..+ ..+..+++|++|+++++.+..++....   ..
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~---~~   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD---QA   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH---HH
T ss_pred             cCCcCCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchh---hc
Confidence            34456788887765544444332   233447999999886 45555 467788899999999977877653221   24


Q ss_pred             CCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          128 MPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++|+.|+++++ ++..+|.   +..+++|+.|++++++ +..++...   .        ..+..+++|+.|++.+++
T Consensus        87 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~---~--------~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           87 LPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYR---L--------YVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHH---H--------HHHHHCTTCSEETTEECC
T ss_pred             CCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHH---H--------HHHHHCCccceeCCCcCC
Confidence            899999999986 6777763   5678999999999874 22232100   0        013457888888887765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.28  E-value=9e-08  Score=85.25  Aligned_cols=100  Identities=16%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             CChhhhccCcccceEEccccCccc-c---cccccccccchhhHhhhhhc-cCCccCceeeEEecccch--hhhccCCcch
Q 028049            4 IPQQLISSFSKLQVLRMLHCGYAH-R---SIVEEGKVLSADAESLMKEI-HCLEQLNLITLSLHGSRG--VENFLKFPKL   76 (214)
Q Consensus         4 iP~~~i~~L~~Lq~L~l~~~~~~~-~---~~~~~~~~~~~~~~~~l~eL-~~L~~L~~L~i~~~~~~~--l~~l~~~~~l   76 (214)
                      .|..++.++++|++|++.+|.... .   |..|...     ....+..+ ..+++|+.|+++......  +..+.   .-
T Consensus        57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~-----~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~---~~  128 (594)
T 2p1m_B           57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY-----VYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA---KS  128 (594)
T ss_dssp             CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCB-----CHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH---HH
T ss_pred             CHHHHHhhCCCceEEeccCCCchhhcccccccccch-----hhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH---Hh
Confidence            456677889999999999986411 0   1111100     00111221 234566676665332211  11221   01


Q ss_pred             hccccEEeecCCCCCCc--hhhhcccccccchhhccc
Q 028049           77 QTITQALHIEDCNSLPL--NLLHLANMEHLEKLFIEE  111 (214)
Q Consensus        77 ~~~l~~L~l~~c~~l~~--l~~~l~~l~~L~~L~i~~  111 (214)
                      .++++.|++++|..+..  +......+++|++|++.+
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~  165 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRE  165 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTT
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcC
Confidence            24677777777755433  222233556677777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.27  E-value=1.2e-07  Score=84.42  Aligned_cols=136  Identities=17%  Similarity=0.166  Sum_probs=78.1

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhcc-CCccCceeeEEec-ccc--hhhhccCCcchhccccEEe
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIH-CLEQLNLITLSLH-GSR--GVENFLKFPKLQTITQALH   84 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~-~L~~L~~L~i~~~-~~~--~l~~l~~~~~l~~~l~~L~   84 (214)
                      ..++++|++|++++|...+               ..+..+. .+++|+.|++... ...  .++.+.   .-.++|+.|+
T Consensus       101 ~~~~~~L~~L~L~~~~~~~---------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~---~~~~~L~~L~  162 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTD---------------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA---ATCRNLKELD  162 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCH---------------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHH---HHCTTCCEEE
T ss_pred             HHhCCCCCeEEeeCcEEcH---------------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHH---HhCCCCCEEe
Confidence            3578889999999887621               1223332 3567777777532 111  133332   1135688888


Q ss_pred             ecCCCCCCc-----hhhhcccccccchhhccccccceeecc-cccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEE
Q 028049           85 IEDCNSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVD-CAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCL  157 (214)
Q Consensus        85 l~~c~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~-~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L  157 (214)
                      +++|. +..     +......+++|++|+++++. ..+... ...-...+++|++|++.+|..+..++. +..+++|++|
T Consensus       163 L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  240 (594)
T 2p1m_B          163 LRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL  240 (594)
T ss_dssp             CTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred             CcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence            88875 221     21122356688888887722 111100 000012368899999988877776653 5567888888


Q ss_pred             eEecCcc
Q 028049          158 RILDCDD  164 (214)
Q Consensus       158 ~i~~C~~  164 (214)
                      .+.+|..
T Consensus       241 ~l~~~~~  247 (594)
T 2p1m_B          241 GTGGYTA  247 (594)
T ss_dssp             ECSBCCC
T ss_pred             ccccccC
Confidence            8877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.22  E-value=5.4e-06  Score=62.55  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=44.9

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      +.++.|+++++ .+..++ ..+..+++|+.|+++++.+..++....   ..+++|+.|+++++ +++.+|.  +..+++|
T Consensus        52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           52 TQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF---DKLTQLKELALDTN-QLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred             ccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHh---hCCcccCEEECcCC-cceEeCHHHhcCCccc
Confidence            45666666654 344443 234556666777666655554432211   23566777777664 5666654  3446667


Q ss_pred             cEEeEecC
Q 028049          155 KCLRILDC  162 (214)
Q Consensus       155 ~~L~i~~C  162 (214)
                      ++|++.+.
T Consensus       127 ~~L~l~~N  134 (177)
T 2o6r_A          127 QKIWLHTN  134 (177)
T ss_dssp             CEEECCSS
T ss_pred             CEEEecCC
Confidence            77766654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.22  E-value=2.4e-07  Score=82.56  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=17.3

Q ss_pred             CCChhhhccCcccceEEccccCc
Q 028049            3 EIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      ..|..++.++++|+.|++.+|..
T Consensus        63 ~~~~~~~~~~~~L~~L~L~~~~~   85 (592)
T 3ogk_B           63 ATPDRLSRRFPNLRSLKLKGKPR   85 (592)
T ss_dssp             SCHHHHHHHCTTCSEEEEECSCG
T ss_pred             cChHHHHHhCCCCeEEEecCCcc
Confidence            34566678888899999888754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.20  E-value=1.5e-06  Score=63.78  Aligned_cols=108  Identities=19%  Similarity=0.206  Sum_probs=74.9

Q ss_pred             ccccEEeecCCCCCC--chhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-Ccc-cCCCCC
Q 028049           78 TITQALHIEDCNSLP--LNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-LTW-LVFAPN  153 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~--~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-lp~-~~~l~~  153 (214)
                      +.++.|+++++. +.  .++..+..+++|+.|++.++.+..+ .    ....+++|+.|+++++ ++.. +|. ...+++
T Consensus        17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~----~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI-A----NLPKLNKLKKLELSDN-RVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC-T----TCCCCTTCCEEECCSS-CCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc-h----hhhcCCCCCEEECCCC-cccchHHHHhhhCCC
Confidence            568888888874 33  4544567788999999998767655 1    1246899999999987 5666 664 445899


Q ss_pred             ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccccc
Q 028049          154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAY  207 (214)
Q Consensus       154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i  207 (214)
                      |++|+++++. +..+..             +..+..+++|++|++++++ +..+
T Consensus        90 L~~L~ls~N~-i~~~~~-------------~~~~~~l~~L~~L~l~~N~-l~~~  128 (149)
T 2je0_A           90 LTHLNLSGNK-IKDLST-------------IEPLKKLENLKSLDLFNCE-VTNL  128 (149)
T ss_dssp             CCEEECTTSC-CCSHHH-------------HGGGGGCTTCCEEECTTCG-GGGS
T ss_pred             CCEEECCCCc-CCChHH-------------HHHHhhCCCCCEEeCcCCc-ccch
Confidence            9999999874 443321             0144567788888887763 4443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.18  E-value=2.4e-06  Score=67.16  Aligned_cols=114  Identities=8%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             ChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEe
Q 028049            5 PQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALH   84 (214)
Q Consensus         5 P~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~   84 (214)
                      |.+++.++++|++|++.+++..+.            .   .+.+..+++|+.|+++......+..-. +. -.+.|+.|+
T Consensus        49 ~~~~~~~l~~L~~L~L~~N~i~~i------------~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~-~l~~L~~L~  111 (220)
T 2v70_A           49 ATGIFKKLPQLRKINFSNNKITDI------------E---EGAFEGASGVNEILLTSNRLENVQHKM-FK-GLESLKTLM  111 (220)
T ss_dssp             CCCCGGGCTTCCEEECCSSCCCEE------------C---TTTTTTCTTCCEEECCSSCCCCCCGGG-GT-TCSSCCEEE
T ss_pred             chhhhccCCCCCEEECCCCcCCEE------------C---HHHhCCCCCCCEEECCCCccCccCHhH-hc-CCcCCCEEE
Confidence            456689999999999999987322            1   123566788999888755544433210 11 135789999


Q ss_pred             ecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           85 IEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        85 l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      +++. .+..+. ..+..+++|+.|++.++.+..+....   ...+++|+.|++.+.
T Consensus       112 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          112 LRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA---FDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT---TTTCTTCCEEECCSC
T ss_pred             CCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHH---hcCCCCCCEEEecCc
Confidence            9885 445543 56778899999999997777764322   235889999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.14  E-value=1.1e-05  Score=62.20  Aligned_cols=102  Identities=12%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049           52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK  130 (214)
Q Consensus        52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~  130 (214)
                      ++|+.|+++......++..+   .-...++.|++++. .+..++ ..+..+++|++|+++++.+..+....   ...+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~---~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~  103 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKEL---SNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT---FDGLKS  103 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGG---GGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTT
T ss_pred             CCCCEEECCCCcCchhHHHh---hcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHH---hCCCCC
Confidence            35666665544333332111   11245677777664 334443 34566677777777766665554221   124667


Q ss_pred             ccEEeeecCcCCccCcc--cCCCCCccEEeEec
Q 028049          131 LHSVLIWNCSNVKDLTW--LVFAPNLKCLRILD  161 (214)
Q Consensus       131 L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~  161 (214)
                      |+.|+++++ +++.+|.  +..+++|+.|++.+
T Consensus       104 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A          104 LRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence            777777764 5666654  44566777777655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.13  E-value=5.3e-07  Score=77.82  Aligned_cols=95  Identities=20%  Similarity=0.340  Sum_probs=55.5

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccC-CcchhccccEEe
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLK-FPKLQTITQALH   84 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~-~~~l~~~l~~L~   84 (214)
                      ++..+++|++|++.+|+..+           .........+..+++|+.|+++......  .+.+.. .......++.|+
T Consensus        23 ~~~~~~~L~~L~L~~~~l~~-----------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~   91 (461)
T 1z7x_W           23 LLPLLQQCQVVRLDDCGLTE-----------ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS   91 (461)
T ss_dssp             HHHHHTTCSEEEEESSCCCH-----------HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred             HHhhcCCccEEEccCCCCCH-----------HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence            36788899999999998621           1111223345666788888876443322  222221 111111588888


Q ss_pred             ecCCCCCC-----chhhhcccccccchhhcccccc
Q 028049           85 IEDCNSLP-----LNLLHLANMEHLEKLFIEESNL  114 (214)
Q Consensus        85 l~~c~~l~-----~l~~~l~~l~~L~~L~i~~~~l  114 (214)
                      +++|. +.     .++..+..+++|++|+++++.+
T Consensus        92 L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           92 LQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             CTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             ccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            88874 33     2234567777888888877434

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.10  E-value=9.4e-06  Score=72.90  Aligned_cols=121  Identities=13%  Similarity=0.121  Sum_probs=86.4

Q ss_pred             hccCc-----ccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEE
Q 028049            9 ISSFS-----KLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQAL   83 (214)
Q Consensus         9 i~~L~-----~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L   83 (214)
                      +.+++     +|++|++.++...+.|.                .+  .++|+.|+++-.....++      ...++++.|
T Consensus        50 ~~~l~~C~~~~L~~L~Ls~n~L~~lp~----------------~l--~~~L~~L~Ls~N~l~~ip------~~l~~L~~L  105 (571)
T 3cvr_A           50 VSLLKECLINQFSELQLNRLNLSSLPD----------------NL--PPQITVLEITQNALISLP------ELPASLEYL  105 (571)
T ss_dssp             HHHHHHHHHTTCSEEECCSSCCSCCCS----------------CC--CTTCSEEECCSSCCSCCC------CCCTTCCEE
T ss_pred             hhhccccccCCccEEEeCCCCCCccCH----------------hH--cCCCCEEECcCCCCcccc------cccCCCCEE
Confidence            55555     99999999998743220                11  257888888755544443      234689999


Q ss_pred             eecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCc
Q 028049           84 HIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCD  163 (214)
Q Consensus        84 ~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~  163 (214)
                      +++++ .+..++. +..  +|++|+++++.+..++.       .+++|+.|+++++ +++.+|.  .+++|++|+++++.
T Consensus       106 ~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~  171 (571)
T 3cvr_A          106 DACDN-RLSTLPE-LPA--SLKHLDVDNNQLTMLPE-------LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ  171 (571)
T ss_dssp             ECCSS-CCSCCCC-CCT--TCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC
T ss_pred             EccCC-CCCCcch-hhc--CCCEEECCCCcCCCCCC-------cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC
Confidence            99886 5555543 443  89999999977777642       4789999999986 7888876  57899999999874


Q ss_pred             ccccc
Q 028049          164 DMEEI  168 (214)
Q Consensus       164 ~l~~i  168 (214)
                       +..+
T Consensus       172 -L~~l  175 (571)
T 3cvr_A          172 -LTFL  175 (571)
T ss_dssp             -CSCC
T ss_pred             -CCCc
Confidence             4433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.08  E-value=6.4e-06  Score=75.94  Aligned_cols=102  Identities=14%  Similarity=0.201  Sum_probs=55.6

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEE
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCL  157 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L  157 (214)
                      .++.|+|+++. +..++..+..+++|++|+++++.+..++...    ..+++|+.|+++++ +++.+|. +..+++|++|
T Consensus       225 ~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          225 LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEI----KNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG----GGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEE
T ss_pred             CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhh----hCCCCCCEEeCcCC-cCCccChhhcCCCCCCEE
Confidence            45666666543 3344433445566666666665555444222    23666666666664 4556653 4556666666


Q ss_pred             eEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          158 RILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       158 ~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++++ .+..++.               .+..+++|+.|+|++.+
T Consensus       299 ~L~~N-~l~~lp~---------------~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          299 YFFDN-MVTTLPW---------------EFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             ECCSS-CCCCCCS---------------STTSCTTCCCEECTTSC
T ss_pred             ECCCC-CCCccCh---------------hhhcCCCccEEeCCCCc
Confidence            66665 3333322               34555666666666553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.98  E-value=5.7e-06  Score=74.21  Aligned_cols=118  Identities=16%  Similarity=0.154  Sum_probs=81.9

Q ss_pred             ccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCc
Q 028049           14 KLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPL   93 (214)
Q Consensus        14 ~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~   93 (214)
                      .|++|++.++...+.                 ..+..+++|+.|+++......++.-+   .-.++|+.|++++. .+..
T Consensus       442 ~L~~L~Ls~n~l~~l-----------------p~~~~l~~L~~L~Ls~N~l~~lp~~~---~~l~~L~~L~Ls~N-~l~~  500 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-----------------CHLEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQASDN-ALEN  500 (567)
T ss_dssp             TCSEEECTTSCCSSC-----------------CCGGGGTTCCEEECCSSCCCCCCGGG---GGCTTCCEEECCSS-CCCC
T ss_pred             CceEEEecCCCCCCC-----------------cCccccccCcEeecCcccccccchhh---hcCCCCCEEECCCC-CCCC
Confidence            588999999987322                 12556678888888766555443221   12357899999875 5566


Q ss_pred             hhhhcccccccchhhccccccceee--cccccccCCCCCccEEeeecCcCCccCcc-c----CCCCCccEEe
Q 028049           94 NLLHLANMEHLEKLFIEESNLEDWN--VDCAGEVQKMPKLHSVLIWNCSNVKDLTW-L----VFAPNLKCLR  158 (214)
Q Consensus        94 l~~~l~~l~~L~~L~i~~~~l~~l~--~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~----~~l~~L~~L~  158 (214)
                      ++ .+..+++|+.|+++++.+..+.  ...    ..+++|+.|+++++ .+..+|. .    ..+|+|+.|+
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l----~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPL----VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGG----GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH----hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence            65 6788899999999987777662  222    35899999999986 6776654 1    1278888874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.95  E-value=1.6e-05  Score=61.20  Aligned_cols=114  Identities=17%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTIT   80 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l   80 (214)
                      ++.||.+ +.  ++|++|++.++.....                .+.+..+++|+.|+++......++.- .+.. ...|
T Consensus        22 l~~ip~~-~~--~~l~~L~L~~n~i~~i----------------p~~~~~l~~L~~L~Ls~N~i~~i~~~-~f~~-l~~L   80 (193)
T 2wfh_A           22 LKVLPKG-IP--RDVTELYLDGNQFTLV----------------PKELSNYKHLTLIDLSNNRISTLSNQ-SFSN-MTQL   80 (193)
T ss_dssp             CSSCCSC-CC--TTCCEEECCSSCCCSC----------------CGGGGGCTTCCEEECCSSCCCCCCTT-TTTT-CTTC
T ss_pred             CCcCCCC-CC--CCCCEEECCCCcCchh----------------HHHhhcccCCCEEECCCCcCCEeCHh-HccC-CCCC
Confidence            3567875 33  6899999999987322                12456678888988876555444321 0111 2578


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      +.|++++. .+..++ ..+..+++|+.|++.++.+..++...   ...+++|+.|++.+.
T Consensus        81 ~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           81 LTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA---FNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT---TTTCTTCCEEECCSS
T ss_pred             CEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh---hhcCccccEEEeCCC
Confidence            99999885 456655 45788899999999998787765322   135889999999763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.94  E-value=2.8e-05  Score=59.61  Aligned_cols=104  Identities=10%  Similarity=0.083  Sum_probs=64.5

Q ss_pred             cCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCc
Q 028049           53 QLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKL  131 (214)
Q Consensus        53 ~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L  131 (214)
                      +++.|+++-.....+..-..+ .-.+.++.|++++. .+..+. ..+..+++|++|+++++.+..+....-   ..+++|
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L  104 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLF-GRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMF---LGLHQL  104 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSG-GGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS---TTCTTC
T ss_pred             CCCEEECCCCcCCccCCcccc-ccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh---cCCCCC
Confidence            666666654433332210001 12346888888775 444443 456778888888888877776643211   347888


Q ss_pred             cEEeeecCcCCccC-cc-cCCCCCccEEeEecC
Q 028049          132 HSVLIWNCSNVKDL-TW-LVFAPNLKCLRILDC  162 (214)
Q Consensus       132 ~~L~I~~C~~L~~l-p~-~~~l~~L~~L~i~~C  162 (214)
                      +.|+++++ +++.+ |. +..+++|++|++++.
T Consensus       105 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          105 KTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCC
Confidence            88888875 66665 32 556788888888764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.94  E-value=1.8e-06  Score=72.72  Aligned_cols=96  Identities=10%  Similarity=0.066  Sum_probs=45.7

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCc-cCceeeEEecccchh--hhccCC-cchhccccEE
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLE-QLNLITLSLHGSRGV--ENFLKF-PKLQTITQAL   83 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~-~L~~L~i~~~~~~~l--~~l~~~-~~l~~~l~~L   83 (214)
                      .+...++|++|++++|...+.           ......+.+..++ +|+.|+++-......  ..+... ....+.++.|
T Consensus        17 ~~~~~~~L~~L~Ls~n~l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L   85 (362)
T 3goz_A           17 FTSIPHGVTSLDLSLNNLYSI-----------STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSL   85 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGS-----------CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             HHhCCCCceEEEccCCCCChH-----------HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEE
Confidence            355666688888888876321           1122234455555 677776654433221  111110 0001456677


Q ss_pred             eecCCCCCCchh-----hhcccc-cccchhhccccccc
Q 028049           84 HIEDCNSLPLNL-----LHLANM-EHLEKLFIEESNLE  115 (214)
Q Consensus        84 ~l~~c~~l~~l~-----~~l~~l-~~L~~L~i~~~~l~  115 (214)
                      +++++. +....     ..+..+ ++|++|+++++.+.
T Consensus        86 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           86 NLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             ECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            776654 22211     112333 56666666654443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.92  E-value=5.2e-06  Score=69.87  Aligned_cols=13  Identities=8%  Similarity=-0.015  Sum_probs=10.6

Q ss_pred             cccceEEccccCc
Q 028049           13 SKLQVLRMLHCGY   25 (214)
Q Consensus        13 ~~Lq~L~l~~~~~   25 (214)
                      ++|++|++.+|+.
T Consensus        80 ~~L~~L~Ls~n~l   92 (362)
T 3goz_A           80 ANVTSLNLSGNFL   92 (362)
T ss_dssp             TTCCEEECCSSCG
T ss_pred             CCccEEECcCCcC
Confidence            7888888888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=2.5e-06  Score=65.14  Aligned_cols=88  Identities=23%  Similarity=0.239  Sum_probs=43.8

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccc-cccceeecccccccC-CCCCccEEeeecCcCCccC--cccCCCCC
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQ-KMPKLHSVLIWNCSNVKDL--TWLVFAPN  153 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~-~~~~L~~L~I~~C~~L~~l--p~~~~l~~  153 (214)
                      .++.|++++|. ++... ..+..+++|++|++.+ ..+..-......... ..++|+.|+|++|+++++-  ..+..+++
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46677777765 44322 3344555666666655 344322111000000 0135666666666666542  22344666


Q ss_pred             ccEEeEecCccccc
Q 028049          154 LKCLRILDCDDMEE  167 (214)
Q Consensus       154 L~~L~i~~C~~l~~  167 (214)
                      |++|++++|+++.+
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            66666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.90  E-value=7.7e-06  Score=75.41  Aligned_cols=107  Identities=15%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049           48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK  127 (214)
Q Consensus        48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~  127 (214)
                      +..+.+|+.|+++......++.-.   .-...|+.|+|+++ .+..++..+..+++|+.|+++++.+..++...    ..
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~l~~~~---~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~  291 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFNISANI---FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL----GS  291 (727)
T ss_dssp             --CCCCCCEEECTTSCCSCCCGGG---GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG----GG
T ss_pred             hccCCCCcEEECCCCCCCCCChhh---cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhh----cC
Confidence            344555666665433332222111   01245666777664 34455545666777777777776666554332    24


Q ss_pred             CCCccEEeeecCcCCccCcc-cCCCCCccEEeEecCc
Q 028049          128 MPKLHSVLIWNCSNVKDLTW-LVFAPNLKCLRILDCD  163 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L~i~~C~  163 (214)
                      +++|+.|.++++ ++..+|. +..+++|+.|+++++.
T Consensus       292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence            677777777765 6666764 5667777777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.88  E-value=2.4e-05  Score=58.88  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=76.1

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      +.+|.+ +  .++|++|++.+++..+.+               ...+..+++|+.|+++......++.-. + .-.+.++
T Consensus        20 ~~~p~~-~--~~~l~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~-~-~~l~~L~   79 (177)
T 2o6r_A           20 TSVPTG-I--PSSATRLELESNKLQSLP---------------HGVFDKLTQLTKLSLSQNQIQSLPDGV-F-DKLTKLT   79 (177)
T ss_dssp             SSCCTT-C--CTTCSEEECCSSCCCCCC---------------TTTTTTCTTCSEEECCSSCCCCCCTTT-T-TTCTTCC
T ss_pred             ccCCCC-C--CCCCcEEEeCCCcccEeC---------------HHHhcCcccccEEECCCCcceEeChhH-c-cCCCccC
Confidence            456754 2  378999999999873221               122456688888888755444333210 1 1235789


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCc
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCS  140 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~  140 (214)
                      .|+++++ .+..++ ..+..+++|++|++.++.+..++...   ...+++|+.|++.+.+
T Consensus        80 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           80 ILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI---FDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSSC
T ss_pred             EEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHH---hcCCcccCEEEecCCC
Confidence            9999885 455554 34678899999999987777665322   1358899999998863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.85  E-value=2.2e-05  Score=60.20  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=75.8

Q ss_pred             CCCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhh-hccCCcchhcc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVE-NFLKFPKLQTI   79 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~-~l~~~~~l~~~   79 (214)
                      ++.||.+ +..  +|++|++.+++..+.+           ..   +.+..+++|+.|+++......+. ..  +. -.+.
T Consensus        20 l~~ip~~-~~~--~l~~L~l~~n~i~~~~-----------~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~-~l~~   79 (192)
T 1w8a_A           20 LKEIPRD-IPL--HTTELLLNDNELGRIS-----------SD---GLFGRLPHLVKLELKRNQLTGIEPNA--FE-GASH   79 (192)
T ss_dssp             CSSCCSC-CCT--TCSEEECCSCCCCSBC-----------CS---CSGGGCTTCCEEECCSSCCCCBCTTT--TT-TCTT
T ss_pred             cCcCccC-CCC--CCCEEECCCCcCCccC-----------Cc---cccccCCCCCEEECCCCCCCCcCHhH--cC-Cccc
Confidence            3567875 433  8999999999873321           00   11456678888888755544432 11  11 1357


Q ss_pred             ccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           80 TQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        80 l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      ++.|++++. .+..++ ..+..+++|++|+++++.+..+....   ...+++|+.|++.+.
T Consensus        80 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           80 IQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS---FEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTS---STTCTTCCEEECTTC
T ss_pred             CCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH---hhcCCCCCEEEeCCC
Confidence            899999885 455554 44778899999999997777664322   235889999999874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.82  E-value=7.7e-05  Score=56.35  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      ..++.|++++. .+..++ ..+..+++|+.|+++++.+..++....   ..+++|+.|++++. +++.+|.  +..+++|
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF---DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHh---CCcchhhEEECCCC-ccceeCHHHhccccCC
Confidence            57888888774 445553 456778888888888877776653221   24788888888874 7777764  5567888


Q ss_pred             cEEeEecC
Q 028049          155 KCLRILDC  162 (214)
Q Consensus       155 ~~L~i~~C  162 (214)
                      ++|++++.
T Consensus       108 ~~L~L~~N  115 (174)
T 2r9u_A          108 THIYLYNN  115 (174)
T ss_dssp             SEEECCSS
T ss_pred             CEEEeCCC
Confidence            88888774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.78  E-value=2.5e-05  Score=59.57  Aligned_cols=64  Identities=13%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             cccEEeecCCCCCCchh-hhcccc----cccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccC
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANM----EHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL  145 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l----~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l  145 (214)
                      .|+.|+|++|..+++-. ..+..+    ++|++|++++ +++..-.+...   ..+++|++|+|++|++++..
T Consensus        86 ~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L---~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A           86 YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL---HHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---GGCTTCCEEEEESCTTCCCH
T ss_pred             CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---hcCCCCCEEECCCCCCCCch
Confidence            45556666665554432 222222    2466666655 44443211111   24688888888888888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.77  E-value=0.0001  Score=55.36  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L  154 (214)
                      ..++.|++++. .+..+. ..+..+++|++|+++++.+..++...-   ..+++|+.|++++. +++.++.  +..+++|
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF---DKLTQLTQLSLNDN-QLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhc---cCCCCCCEEECCCC-ccCEeCHHHhcCCCCC
Confidence            57888888774 455553 456778888888888877776653221   35788888888875 7888764  5567888


Q ss_pred             cEEeEecC
Q 028049          155 KCLRILDC  162 (214)
Q Consensus       155 ~~L~i~~C  162 (214)
                      ++|++++-
T Consensus       105 ~~L~L~~N  112 (170)
T 3g39_A          105 THIWLLNN  112 (170)
T ss_dssp             CEEECCSS
T ss_pred             CEEEeCCC
Confidence            88888763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.77  E-value=2.7e-06  Score=73.42  Aligned_cols=82  Identities=23%  Similarity=0.265  Sum_probs=43.7

Q ss_pred             cccEEeecCCCCCCc-----hhhhcccccccchhhccccccceeecccccc--cCCCCCccEEeeecCcCCc-----cCc
Q 028049           79 ITQALHIEDCNSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVDCAGE--VQKMPKLHSVLIWNCSNVK-----DLT  146 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~--~~~~~~L~~L~I~~C~~L~-----~lp  146 (214)
                      .++.|++++|. +..     ++..+..+++|++|+++++.+..........  ....++|++|++++| ++.     .++
T Consensus       314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~  391 (461)
T 1z7x_W          314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA  391 (461)
T ss_dssp             CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred             cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHH
Confidence            56667776664 222     1123444566777777664443321110000  012567888888777 555     344


Q ss_pred             c-cCCCCCccEEeEecC
Q 028049          147 W-LVFAPNLKCLRILDC  162 (214)
Q Consensus       147 ~-~~~l~~L~~L~i~~C  162 (214)
                      . +..+++|++|+++++
T Consensus       392 ~~l~~~~~L~~L~l~~N  408 (461)
T 1z7x_W          392 ATLLANHSLRELDLSNN  408 (461)
T ss_dssp             HHHHHCCCCCEEECCSS
T ss_pred             HHHHhCCCccEEECCCC
Confidence            2 445677888888776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.61  E-value=9.7e-07  Score=68.07  Aligned_cols=135  Identities=11%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +....+++.+++.++...+..    .. ...    ....+..+++|+.|+++-.....++.+    .-.++++.|+++++
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~----~~-l~~----l~~~~~~l~~L~~L~ls~n~l~~l~~~----~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMI----PP-IEK----MDATLSTLKACKHLALSTNNIEKISSL----SGMENLRILSLGRN   80 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCC----TT-CCC----CHHHHHHTTTCSEEECSEEEESCCCCH----HHHTTCCEEEEEEE
T ss_pred             HHhcccccCcchheeEecccc----Cc-Hhh----hhHHHhcCCCCCEEECCCCCCcccccc----ccCCCCCEEECCCC
Confidence            345667777777777652210    00 000    011345567788887765544444322    12357899999886


Q ss_pred             CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc---cCCCCCccEEeEecCc
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---LVFAPNLKCLRILDCD  163 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---~~~l~~L~~L~i~~C~  163 (214)
                       .+..++..+..+++|+.|+++++.+..++ ..    ..+++|+.|+++++ ++..++.   +..+++|++|++.+++
T Consensus        81 -~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~----~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A           81 -LIKKIENLDAVADTLEELWISYNQIASLS-GI----EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             -EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH----HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             -CcccccchhhcCCcCCEEECcCCcCCcCC-cc----ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence             34455544556688999999986666553 12    24789999999886 6776643   6678999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.49  E-value=0.00021  Score=53.88  Aligned_cols=82  Identities=13%  Similarity=0.121  Sum_probs=49.5

Q ss_pred             ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049           52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK  130 (214)
Q Consensus        52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~  130 (214)
                      ++|+.|+++......+..- .+. -.+.|+.|++++. .+..++ ..+..+++|++|+++++.+..++...   ...+++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~-~~~-~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~---~~~l~~  106 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPG-VFD-HLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA---FDNLKS  106 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTT-TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred             CCCcEEEeCCCCccccCHH-Hhc-CCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCccceeCHHH---hccccC
Confidence            5677777665444333210 011 1246788888774 556655 33567788888888887777664321   134778


Q ss_pred             ccEEeeecC
Q 028049          131 LHSVLIWNC  139 (214)
Q Consensus       131 L~~L~I~~C  139 (214)
                      |+.|++.+.
T Consensus       107 L~~L~L~~N  115 (174)
T 2r9u_A          107 LTHIYLYNN  115 (174)
T ss_dssp             CSEEECCSS
T ss_pred             CCEEEeCCC
Confidence            888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.47  E-value=4.8e-05  Score=64.49  Aligned_cols=169  Identities=12%  Similarity=0.154  Sum_probs=84.5

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +.++++|+.|.+.+.........|...      ...-.-+..+++|+.|.+.......++.   . . .++|+.|+|..|
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~------~~L~~ll~~~P~L~~L~L~g~~~l~l~~---~-~-~~~L~~L~L~~~  203 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQ------VDLSPVLDAMPLLNNLKIKGTNNLSIGK---K-P-RPNLKSLEIISG  203 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBC------CBCHHHHHTCTTCCEEEEECCBTCBCCS---C-B-CTTCSEEEEECS
T ss_pred             hhhcchhhheeecCcchhhcccccccc------cCHHHHHhcCCCCcEEEEeCCCCceecc---c-c-CCCCcEEEEecC
Confidence            557788888888654321000000000      0001113455778888776432112222   1 1 357888888765


Q ss_pred             CCCCchh-hhc--ccccccchhhccc--cc------cceeecccccccCCCCCccEEeeecCcCCcc----CcccCCCCC
Q 028049           89 NSLPLNL-LHL--ANMEHLEKLFIEE--SN------LEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD----LTWLVFAPN  153 (214)
Q Consensus        89 ~~l~~l~-~~l--~~l~~L~~L~i~~--~~------l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~----lp~~~~l~~  153 (214)
                      . +..-. ..+  ..+++|++|+++.  +.      ++.+.....  ...||+|+.|.+.+|.--..    +.....+|+
T Consensus       204 ~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~--~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~  280 (362)
T 2ra8_A          204 G-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS--KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ  280 (362)
T ss_dssp             B-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC--TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred             C-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh--cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence            3 32211 122  3567888887752  11      211110000  13588999999988743211    111124788


Q ss_pred             ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      |++|+++. +.+...-.    .      .+...+..+++|+.|++++|.
T Consensus       281 L~~LdLs~-n~L~d~G~----~------~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          281 LETMDISA-GVLTDEGA----R------LLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CSEEECCS-SCCBHHHH----H------HHHTTHHHHTTCSEEECCSBB
T ss_pred             CCEEECCC-CCCChHHH----H------HHHhhcccCCcceEEECCCCc
Confidence            99999854 34432210    0      111233467889999998774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.45  E-value=0.00037  Score=57.82  Aligned_cols=81  Identities=22%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             ccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCcc
Q 028049           78 TITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLK  155 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~  155 (214)
                      ..|+.|+|++.+.+..++ ..+..+++|+.|+++++.+..++...-   ..+++|+.|++++ ++|..+|. .....+|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF---HFTPRLSRLNLSF-NALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGG---GSCSCCCEEECCS-SCCSCCCSTTTCSCCCC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHh---cCCcCCCEEeCCC-CccceeCHHHcccCCce
Confidence            468899998777777776 567888999999999888887753221   3588999999987 48888875 22233488


Q ss_pred             EEeEecC
Q 028049          156 CLRILDC  162 (214)
Q Consensus       156 ~L~i~~C  162 (214)
                      .|++.+.
T Consensus       107 ~l~l~~N  113 (347)
T 2ifg_A          107 ELVLSGN  113 (347)
T ss_dssp             EEECCSS
T ss_pred             EEEeeCC
Confidence            8888763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.38  E-value=0.00034  Score=52.41  Aligned_cols=82  Identities=13%  Similarity=0.154  Sum_probs=52.2

Q ss_pred             ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCC
Q 028049           52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPK  130 (214)
Q Consensus        52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~  130 (214)
                      ++|+.|+++-.....+..- .+. -.+.|+.|++++. .+..++ ..+..+++|++|+++++.+..++...   ...+++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~-~~~-~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPG-VFD-RLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA---FDNLKS  103 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTT-TTT-TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred             CCCcEEEcCCCcCCccChh-hhc-CcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCccCEeCHHH---hcCCCC
Confidence            5677777765544443210 011 1246888999875 556665 34577888999998887777665321   135788


Q ss_pred             ccEEeeecC
Q 028049          131 LHSVLIWNC  139 (214)
Q Consensus       131 L~~L~I~~C  139 (214)
                      |+.|++++-
T Consensus       104 L~~L~L~~N  112 (170)
T 3g39_A          104 LTHIWLLNN  112 (170)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEeCCC
Confidence            899988763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.36  E-value=0.00052  Score=56.72  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=34.2

Q ss_pred             ccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc-EEeEecCcccccc
Q 028049          101 MEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK-CLRILDCDDMEEI  168 (214)
Q Consensus       101 l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~-~L~i~~C~~l~~i  168 (214)
                      +++|+.+++.+++++.++...   -..+++|+.|.+.+  +++.++.  ...+++|+ .+.+.+  +++.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~a---F~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I  288 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFT---FAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAI  288 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTT---TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred             cCCCeEEECCCCCcceecHhh---hhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEE
Confidence            456666666665566554221   12356677777765  4666653  34466676 666655  44433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=0.0015  Score=53.99  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=21.3

Q ss_pred             CCCccEEeeecCcCCccCcc--cCCCCCccEEeEec
Q 028049          128 MPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILD  161 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~  161 (214)
                      +++|+.+++.++ +++.++.  ...+++|+++.+.+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCT
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCc
Confidence            467777777654 4666654  44567788887743

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.11  E-value=0.001  Score=55.08  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=56.7

Q ss_pred             ccCCccCceeeEEe-cccchhhhccCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeeccccccc
Q 028049           48 IHCLEQLNLITLSL-HGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEV  125 (214)
Q Consensus        48 L~~L~~L~~L~i~~-~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~  125 (214)
                      +..+.+|+.|+++. .....++.- .+.. ..+|+.|+|++. .+..++ ..+..+++|+.|+++++.+..++....   
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~-~~~~-l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~---  100 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELR-DLRG-LGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV---  100 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGG-GSCS-CCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT---
T ss_pred             CCCCCCeeEEEccCCCCCCCcChh-Hhcc-ccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc---
Confidence            67778899988873 554444321 0111 357899999885 566665 467888999999999988877653321   


Q ss_pred             CCCCCccEEeeecC
Q 028049          126 QKMPKLHSVLIWNC  139 (214)
Q Consensus       126 ~~~~~L~~L~I~~C  139 (214)
                      ..++ |+.|.+.+.
T Consensus       101 ~~~~-L~~l~l~~N  113 (347)
T 2ifg_A          101 QGLS-LQELVLSGN  113 (347)
T ss_dssp             CSCC-CCEEECCSS
T ss_pred             ccCC-ceEEEeeCC
Confidence            1233 899998763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.00  E-value=6.5e-05  Score=63.78  Aligned_cols=135  Identities=13%  Similarity=0.074  Sum_probs=68.6

Q ss_pred             CcccceEEccccCcccccccccccccchhhHhhhhhccCC-ccCceeeEEecccch--hhhccCCcchhccccEEeecCC
Q 028049           12 FSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCL-EQLNLITLSLHGSRG--VENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus        12 L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~--l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +++|++|++.+|....           ........-+..- .+|+.|+++-.....  +..+.   ....+++.|++++|
T Consensus        71 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---~~L~~L~~L~Ls~n  136 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTP-----------VKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL---PVFLRARKLGLQLN  136 (372)
T ss_dssp             HTTCCEEECTTSCCCH-----------HHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH---HHHHTEEEEECCSS
T ss_pred             HhhCCEEEecCCCCCH-----------HHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH---HHHHhccHhhcCCC
Confidence            4578888888887621           1111111222222 577777765443321  22221   12246778888776


Q ss_pred             CCCCchh-----hhc-ccccccchhhccccccceeecccc-cccCCCCCccEEeeecCcCCccC-----c-ccCCCCCcc
Q 028049           89 NSLPLNL-----LHL-ANMEHLEKLFIEESNLEDWNVDCA-GEVQKMPKLHSVLIWNCSNVKDL-----T-WLVFAPNLK  155 (214)
Q Consensus        89 ~~l~~l~-----~~l-~~l~~L~~L~i~~~~l~~l~~~~~-~~~~~~~~L~~L~I~~C~~L~~l-----p-~~~~l~~L~  155 (214)
                       .+....     ..+ ...++|++|+++++.+........ ......++|++|++++| ++...     . .+...++|+
T Consensus       137 -~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~  214 (372)
T 3un9_A          137 -SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQ  214 (372)
T ss_dssp             -CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCC
T ss_pred             -CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcC
Confidence             333322     112 234567888877755543211000 00124667888888776 35432     1 133456788


Q ss_pred             EEeEecC
Q 028049          156 CLRILDC  162 (214)
Q Consensus       156 ~L~i~~C  162 (214)
                      +|++++|
T Consensus       215 ~L~Ls~N  221 (372)
T 3un9_A          215 ELNVAYN  221 (372)
T ss_dssp             EEECCSS
T ss_pred             eEECCCC
Confidence            8888776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.27  E-value=0.00028  Score=59.81  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=78.0

Q ss_pred             CcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCCc-chhccccEEeecCC
Q 028049           12 FSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKFP-KLQTITQALHIEDC   88 (214)
Q Consensus        12 L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~~-~l~~~l~~L~l~~c   88 (214)
                      .++|++|++++|....           ........   .+++|+.|+++......  ...+...- .-...++.|++++|
T Consensus       100 ~~~L~~L~Ls~n~l~~-----------~~~~~l~~---~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n  165 (372)
T 3un9_A          100 RHALDEVNLASCQLDP-----------AGLRTLLP---VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN  165 (372)
T ss_dssp             SSCEEEEECTTCCCCH-----------HHHHHTHH---HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred             CCCceEEEecCCCCCH-----------HHHHHHHH---HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence            3799999999998721           11111112   23567777776544422  12221100 01246899999998


Q ss_pred             CCCCc-----hhhhcccccccchhhccccccceeeccc-ccccCCCCCccEEeeecCcCCccCc-----c-cCCCCCccE
Q 028049           89 NSLPL-----NLLHLANMEHLEKLFIEESNLEDWNVDC-AGEVQKMPKLHSVLIWNCSNVKDLT-----W-LVFAPNLKC  156 (214)
Q Consensus        89 ~~l~~-----l~~~l~~l~~L~~L~i~~~~l~~l~~~~-~~~~~~~~~L~~L~I~~C~~L~~lp-----~-~~~l~~L~~  156 (214)
                      . +..     +...+...++|++|+++++.+....... .......++|+.|++++| ++....     . +...++|++
T Consensus       166 ~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~  243 (372)
T 3un9_A          166 P-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLEL  243 (372)
T ss_dssp             C-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCE
T ss_pred             C-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCE
Confidence            4 433     2233466778999999886555321100 000123568999999987 555321     1 224688999


Q ss_pred             EeEecCc
Q 028049          157 LRILDCD  163 (214)
Q Consensus       157 L~i~~C~  163 (214)
                      |+++++.
T Consensus       244 L~Ls~N~  250 (372)
T 3un9_A          244 LHLYFNE  250 (372)
T ss_dssp             EECTTSS
T ss_pred             EeccCCC
Confidence            9998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.10  E-value=0.055  Score=46.09  Aligned_cols=25  Identities=4%  Similarity=0.121  Sum_probs=19.0

Q ss_pred             CCCCChhhhccCcccceEEccccCc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~   25 (214)
                      ++.|+.+++.++++|+.+++.+++.
T Consensus       168 l~~I~~~aF~~c~~L~~l~l~~n~l  192 (401)
T 4fdw_A          168 LEQLKEDIFYYCYNLKKADLSKTKI  192 (401)
T ss_dssp             CCEECSSTTTTCTTCCEEECTTSCC
T ss_pred             ccEehHHHhhCcccCCeeecCCCcc
Confidence            3567777788888999998887654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.09  E-value=0.004  Score=52.61  Aligned_cols=135  Identities=15%  Similarity=0.067  Sum_probs=75.3

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEee
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHI   85 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l   85 (214)
                      ++..+++|+.|+++++....+                 ..+ .+++|+.|.+.....+  .+..+..  ...++|+.|.|
T Consensus       167 ll~~~P~L~~L~L~g~~~l~l-----------------~~~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L  226 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNLSI-----------------GKK-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVL  226 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTCBC-----------------CSC-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEE
T ss_pred             HHhcCCCCcEEEEeCCCCcee-----------------ccc-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEE
Confidence            567889999999998742111                 112 2578888887644432  1222221  01246788887


Q ss_pred             cCC-------CCCCchhhhc--ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCcc-----Ccc-cCC
Q 028049           86 EDC-------NSLPLNLLHL--ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKD-----LTW-LVF  150 (214)
Q Consensus        86 ~~c-------~~l~~l~~~l--~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~-----lp~-~~~  150 (214)
                      +.+       .++..+...+  ..+++|++|.+.++.+..-..........+++|++|+++. +.+..     ++. +..
T Consensus       227 ~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~  305 (362)
T 2ra8_A          227 YVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDK  305 (362)
T ss_dssp             ECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHH
T ss_pred             eccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhccc
Confidence            532       1122222112  3468899998876332210000000013588999999965 46665     222 245


Q ss_pred             CCCccEEeEecCc
Q 028049          151 APNLKCLRILDCD  163 (214)
Q Consensus       151 l~~L~~L~i~~C~  163 (214)
                      +++|+.|++++|.
T Consensus       306 l~~L~~L~L~~n~  318 (362)
T 2ra8_A          306 IKHLKFINMKYNY  318 (362)
T ss_dssp             HTTCSEEECCSBB
T ss_pred             CCcceEEECCCCc
Confidence            7899999998873

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.69  E-value=0.073  Score=45.30  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCcc
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLK  155 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~  155 (214)
                      .++.+.+..  +++.+. ..+..+++|+.+.+.+ +++.+....-    .-.+|+.+.+.+  +++.++.  ...+++|+
T Consensus       204 ~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF----~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~  274 (401)
T 4fdw_A          204 GIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAF----RESGITTVKLPN--GVTNIASRAFYYCPELA  274 (401)
T ss_dssp             CCSEEECCT--TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTT----TTCCCSEEEEET--TCCEECTTTTTTCTTCC
T ss_pred             ccCEEEeCC--chheehhhHhhCCCCCCEEecCC-CccCcccccc----ccCCccEEEeCC--CccEEChhHhhCCCCCC
Confidence            445555532  233333 3445556666666543 2333321110    114566666643  4555542  33455666


Q ss_pred             EEeEe
Q 028049          156 CLRIL  160 (214)
Q Consensus       156 ~L~i~  160 (214)
                      .+.+.
T Consensus       275 ~l~l~  279 (401)
T 4fdw_A          275 EVTTY  279 (401)
T ss_dssp             EEEEE
T ss_pred             EEEeC
Confidence            66553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.52  E-value=0.003  Score=47.94  Aligned_cols=18  Identities=6%  Similarity=0.087  Sum_probs=12.0

Q ss_pred             hhccCcccceEEcccc-Cc
Q 028049            8 LISSFSKLQVLRMLHC-GY   25 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~-~~   25 (214)
                      ++...++|++|++++| ..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i   49 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNI   49 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTC
T ss_pred             HHhcCCCCCEEEecCCCCC
Confidence            3456677777777777 54

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.99  E-value=0.039  Score=44.55  Aligned_cols=15  Identities=13%  Similarity=0.186  Sum_probs=7.4

Q ss_pred             cCcccceEEccccCc
Q 028049           11 SFSKLQVLRMLHCGY   25 (214)
Q Consensus        11 ~L~~Lq~L~l~~~~~   25 (214)
                      ++++|++|++++++.
T Consensus       168 ~l~~L~~L~Ls~N~l  182 (267)
T 3rw6_A          168 NIPELLSLNLSNNRL  182 (267)
T ss_dssp             HCTTCCEEECTTSCC
T ss_pred             hCCCCCEEECCCCCC
Confidence            344555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.24  E-value=0.041  Score=44.45  Aligned_cols=62  Identities=21%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             cccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCC--CccEEeEecCc
Q 028049          100 NMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAP--NLKCLRILDCD  163 (214)
Q Consensus       100 ~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~--~L~~L~i~~C~  163 (214)
                      ++++|+.|+++++.+..+.. .......+++|+.|++++ ++++.+..+..+.  +|++|.+.+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~-l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGG-GTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCcc-chhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCc
Confidence            46788888888866655421 011112588888888876 4666654333333  78888887765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.87  E-value=0.23  Score=37.25  Aligned_cols=17  Identities=0%  Similarity=0.073  Sum_probs=12.5

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +...++|++|++.+|..
T Consensus        61 L~~~~~L~~L~Ls~n~i   77 (185)
T 1io0_A           61 LKTNTYVKKFSIVGTRS   77 (185)
T ss_dssp             HTTCCSCCEEECTTSCC
T ss_pred             HHhCCCcCEEECcCCCC
Confidence            45567788888888876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.19
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.12
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.1
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.08
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.94
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.87
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.8
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.75
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.72
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.65
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.52
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.27
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.1
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.61
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.01
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	92.76
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	80.05

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=3.9e-11  Score=91.66  Aligned_cols=152  Identities=14%  Similarity=0.212  Sum_probs=90.4

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      ..+.++++|++.++....                 ++.++.+++|+.|+++-.....+..+..    .++++.|+++++.
T Consensus        37 ~~l~~l~~L~l~~~~i~~-----------------l~~l~~l~nL~~L~Ls~N~l~~~~~l~~----l~~L~~L~l~~n~   95 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKS-----------------IDGVEYLNNLTQINFSNNQLTDITPLKN----LTKLVDILMNNNQ   95 (199)
T ss_dssp             HHHTTCCEEECTTSCCCC-----------------CTTGGGCTTCCEEECCSSCCCCCGGGTT----CTTCCEEECCSSC
T ss_pred             HHhcCCCEEECCCCCCCC-----------------ccccccCCCcCcCccccccccCcccccC----Ccccccccccccc
Confidence            346778888888887622                 2234556777777776444444333222    2357778777764


Q ss_pred             CCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCccccccc
Q 028049           90 SLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEII  169 (214)
Q Consensus        90 ~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~  169 (214)
                      . ..++ .+..+++|+.|++.+.....+..     ...+++|+.+.++++ +++.++.+..+++|++|++.++ ++..+.
T Consensus        96 ~-~~~~-~l~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~n-~l~~l~  166 (199)
T d2omxa2          96 I-ADIT-PLANLTNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSSN-QVTDLK  166 (199)
T ss_dssp             C-CCCG-GGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS-CCCCCG
T ss_pred             c-cccc-ccccccccccccccccccccccc-----cchhhhhHHhhhhhh-hhcccccccccccccccccccc-cccCCc
Confidence            3 3332 45667777777777633322211     124777888888775 5666666666777888877765 333321


Q ss_pred             ccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049          170 SVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       170 ~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                                      .+..+++|++|++++++ ++.+.
T Consensus       167 ----------------~l~~l~~L~~L~ls~N~-i~~i~  188 (199)
T d2omxa2         167 ----------------PLANLTTLERLDISSNK-VSDIS  188 (199)
T ss_dssp             ----------------GGTTCTTCCEEECCSSC-CCCCG
T ss_pred             ----------------cccCCCCCCEEECCCCC-CCCCc
Confidence                            23456777777777763 55554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=5.6e-11  Score=91.55  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=52.1

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEe
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLR  158 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~  158 (214)
                      .++.|++.++.. ..+ ..+..+++++.+++.++.+.....     ...+++|+.+.+.++ ++..++.+..+++|++|+
T Consensus       113 ~L~~L~l~~~~~-~~~-~~l~~l~~l~~l~~~~n~l~~~~~-----~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~  184 (210)
T d1h6ta2         113 KLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKITDITV-----LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLY  184 (210)
T ss_dssp             TCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEE
T ss_pred             cccccccccccc-ccc-cccccccccccccccccccccccc-----ccccccccccccccc-cccccccccCCCCCCEEE
Confidence            345555554432 222 123344445555544433332210     124677777777776 566666566677788887


Q ss_pred             EecCcccccccccccchhhHHHhhhcccCCCCCccCeeecC
Q 028049          159 ILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLG  199 (214)
Q Consensus       159 i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~  199 (214)
                      ++++ .++++.                .+..+++|++|+|+
T Consensus       185 Ls~N-~i~~l~----------------~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKN-HISDLR----------------ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSS-CCCBCG----------------GGTTCTTCSEEEEE
T ss_pred             CCCC-CCCCCh----------------hhcCCCCCCEEEcc
Confidence            7766 454431                33456777777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=5.4e-11  Score=92.41  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=23.0

Q ss_pred             CCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049          127 KMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus       127 ~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      .+++|+.|++++| +++.++.+..+++|++|++++| +++++
T Consensus       171 ~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N-~lt~i  210 (227)
T d1h6ua2         171 NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDV  210 (227)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBC
T ss_pred             ccccceecccCCC-ccCCChhhcCCCCCCEEECcCC-cCCCC
Confidence            3556666666655 5566555555566666666665 34433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=98.98  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             ccccEEeecCCCCCCchh--hhccc-ccccchhhccc--cccceeecccccccCCCCCccEEeeecCcCCccC--cccCC
Q 028049           78 TITQALHIEDCNSLPLNL--LHLAN-MEHLEKLFIEE--SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDL--TWLVF  150 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~--~~l~~-l~~L~~L~i~~--~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~l--p~~~~  150 (214)
                      +.|+.|++++|..+..-.  ..+.. .++|++|++.+  .++..-.+.  .-...+++|++|++++|+.++.-  ..+..
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--HHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             Hhccccccccccccccccchhhhcccccccchhhhccccccccccccc--ccccccccccccccccccCCCchhhhhhcc
Confidence            356666666666553321  11211 24566666654  222211000  00124688999999988888643  34667


Q ss_pred             CCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcc
Q 028049          151 APNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNA  201 (214)
Q Consensus       151 l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~c  201 (214)
                      +++|++|++++|..+.+-.-              ..+..+|+|+.|++.+|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l--------------~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETL--------------LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGG--------------GGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHH--------------HHHhcCCCCCEEeeeCC
Confidence            88899999999877643210              13345678888888776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-10  Score=91.20  Aligned_cols=161  Identities=16%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ++||.+ |.  ++||+|++.+++..+.+               .+.+..+++|+.|+++-..+..++.+.    ..+.|+
T Consensus        23 ~~iP~~-lp--~~l~~L~Ls~N~i~~l~---------------~~~f~~l~~L~~L~L~~N~l~~l~~~~----~l~~L~   80 (266)
T d1p9ag_          23 TALPPD-LP--KDTTILHLSENLLYTFS---------------LATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLG   80 (266)
T ss_dssp             SSCCSC-CC--TTCCEEECTTSCCSEEE---------------GGGGTTCTTCCEEECTTSCCCEEECCS----CCTTCC
T ss_pred             CeeCcC-cC--cCCCEEECcCCcCCCcC---------------HHHhhcccccccccccccccccccccc----cccccc
Confidence            467765 33  46788888888763321               122445566666666544333333221    124566


Q ss_pred             EEeecCCCCCCchhhhcccccccchhhccccccceeecccc---------------------cccCCCCCccEEeeecCc
Q 028049           82 ALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCA---------------------GEVQKMPKLHSVLIWNCS  140 (214)
Q Consensus        82 ~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~---------------------~~~~~~~~L~~L~I~~C~  140 (214)
                      .|+++++ .+...+..+..+++|+.|++++..+..+.....                     +....+++|+.+.++++ 
T Consensus        81 ~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-  158 (266)
T d1p9ag_          81 TLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-  158 (266)
T ss_dssp             EEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred             ccccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc-
Confidence            6666654 233332334445556666555422222211100                     00123556666666664 


Q ss_pred             CCccCcc--cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          141 NVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       141 ~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++.++.  +..+++|++|++++.. ++.++.               ++..+++|+.|.|.+=|
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~---------------~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENS-LYTIPK---------------GFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCT---------------TTTTTCCCSEEECCSCC
T ss_pred             cccccCccccccccccceeecccCC-CcccCh---------------hHCCCCCCCEEEecCCC
Confidence            5666653  4456677777776653 554432               44456778888877543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.8e-10  Score=89.71  Aligned_cols=148  Identities=18%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             ccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCc
Q 028049           52 EQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKL  131 (214)
Q Consensus        52 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L  131 (214)
                      ++++.|+++-.....++.- .+.. .++|+.|+++++ .++.++ .+..+++|++|+++++.+..+....    ..+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~-~f~~-l~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~----~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLA-TLMP-YTRLTQLNLDRA-ELTKLQ-VDGTLPVLGTLDLSHNQLQSLPLLG----QTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGG-GGTT-CTTCCEEECTTS-CCCEEE-CCSCCTTCCEEECCSSCCSSCCCCT----TTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHH-Hhhc-cccccccccccc-cccccc-ccccccccccccccccccccccccc----cccccc
Confidence            4677777765444433310 0111 357899999886 566664 4567889999999986666543222    357888


Q ss_pred             cEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccccccccc--hhhHH-------Hhhhc-ccCCCCCccCeeecC
Q 028049          132 HSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENF--EKLIE-------VSEMM-GELNLFSGLESLSLG  199 (214)
Q Consensus       132 ~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~--~~l~~-------~~~~~-~~~~~f~~L~~L~l~  199 (214)
                      +.|+++++. +..++.  ...++++++|.+.++ .+..+......  ..+..       +..++ ..+..+++|++|+++
T Consensus       103 ~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         103 TVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             CEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccc-cceeecccccccccccccccccc-ccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            888888763 444442  445677788877664 33333211000  00000       01112 245678999999999


Q ss_pred             ccccccccCCC
Q 028049          200 NASNLKAYVHR  210 (214)
Q Consensus       200 ~cp~L~~i~~~  210 (214)
                      +.. |++++.+
T Consensus       181 ~N~-L~~lp~~  190 (266)
T d1p9ag_         181 ENS-LYTIPKG  190 (266)
T ss_dssp             SSC-CCCCCTT
T ss_pred             cCC-CcccChh
Confidence            875 8887754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=1.1e-09  Score=83.44  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      |.++++|++|++++|+..++                 ..+..+++|+.|++.......++.+..    ...++.|+++++
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~-----------------~~l~~l~~L~~L~l~~n~~~~~~~l~~----l~~L~~L~l~~~  116 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDI-----------------TPLKNLTKLVDILMNNNQIADITPLAN----LTNLTGLTLFNN  116 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-----------------GGGTTCTTCCEEECCSSCCCCCGGGTT----CTTCSEEECCSS
T ss_pred             cccCCCcCcCccccccccCc-----------------ccccCCccccccccccccccccccccc----cccccccccccc
Confidence            78899999999999987332                 125667788888876554444443322    246889999887


Q ss_pred             CCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccc
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      .... + ..+..+++|+.|+++++.+..+..     ...+++|+.|.+.+| +++.++.+..+++|++|+++++ ++.++
T Consensus       117 ~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~-----l~~~~~L~~L~l~~n-~l~~l~~l~~l~~L~~L~ls~N-~i~~i  187 (199)
T d2omxa2         117 QITD-I-DPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSN-QVTDLKPLANLTTLERLDISSN-KVSDI  187 (199)
T ss_dssp             CCCC-C-GGGTTCTTCSEEECCSSCCCCCGG-----GTTCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred             cccc-c-cccchhhhhHHhhhhhhhhccccc-----ccccccccccccccc-cccCCccccCCCCCCEEECCCC-CCCCC
Confidence            6533 2 246778899999998866655421     135889999999986 7888887788999999999998 46554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=1.2e-09  Score=90.01  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=53.1

Q ss_pred             cccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhh
Q 028049           98 LANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKL  177 (214)
Q Consensus        98 l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l  177 (214)
                      +..+++++.|++++++++.+..     ...+++|++|++++| +++.++.+..+++|++|+++++ +++.++        
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~-----l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N-~l~~l~--------  367 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHN-QISDLT--------  367 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCBCG--------
T ss_pred             cchhcccCeEECCCCCCCCCcc-----cccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCC-cCCCCh--------
Confidence            3445566666666655554421     135788888888887 7777776677888888888765 455442        


Q ss_pred             HHHhhhcccCCCCCccCeeecCc
Q 028049          178 IEVSEMMGELNLFSGLESLSLGN  200 (214)
Q Consensus       178 ~~~~~~~~~~~~f~~L~~L~l~~  200 (214)
                              .+..+++|+.|+|++
T Consensus       368 --------~l~~l~~L~~L~L~~  382 (384)
T d2omza2         368 --------PLANLTRITQLGLND  382 (384)
T ss_dssp             --------GGTTCTTCSEEECCC
T ss_pred             --------hhccCCCCCEeeCCC
Confidence                    245677888888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=5.2e-09  Score=84.14  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             cccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccEE
Q 028049           79 ITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKCL  157 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~L  157 (214)
                      .++.|++.++......+..+..++++++|+++++.+..+...+.   ..+++|++|+++++ +++.+|. +..+++|++|
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEE
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc---cccccceeeecccc-cccccccccccccCCCEE
Confidence            34455554443322212334555566666666555555533221   35789999999998 8888874 6678999999


Q ss_pred             eEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          158 RILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       158 ~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      +++++ +++.+.... ..       ........++|+.|.|.+.|
T Consensus       248 ~Ls~N-~i~~i~~~~-f~-------~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         248 YLHNN-NISAIGSND-FC-------PPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ECCSS-CCCCCCTTS-SS-------CSSCCTTSCCCSEEECCSSS
T ss_pred             ECCCC-ccCccChhh-cc-------CcchhcccCCCCEEECCCCc
Confidence            99985 577664311 00       00122345778899998877

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=1.8e-09  Score=83.54  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=96.5

Q ss_pred             ccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCC
Q 028049           10 SSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCN   89 (214)
Q Consensus        10 ~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~   89 (214)
                      ..|.+|+.|++.+|+...                 ++.++.+++|+.++++-.....+..+..    ..+++.+.++++.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-----------------l~~l~~l~~L~~L~ls~n~i~~~~~l~~----l~~l~~l~~~~n~   96 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-----------------IEGVQYLNNLIGLELKDNQITDLAPLKN----LTKITELELSGNP   96 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-----------------CTTGGGCTTCCEEECCSSCCCCCGGGTT----CCSCCEEECCSCC
T ss_pred             HHcCCcCEEECCCCCCCc-----------------chhHhcCCCCcEeecCCceeeccccccc----ccccccccccccc
Confidence            467888999998887622                 2335566777777776444333333322    2356777777653


Q ss_pred             CCCchhhhcccccccchhhccccccceeec-cc---------c-------cccCCCCCccEEeeecCcCCccCcccCCCC
Q 028049           90 SLPLNLLHLANMEHLEKLFIEESNLEDWNV-DC---------A-------GEVQKMPKLHSVLIWNCSNVKDLTWLVFAP  152 (214)
Q Consensus        90 ~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~-~~---------~-------~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~  152 (214)
                       ++.+ ..+..+++|+.+.+.+.....+.. ..         .       ......++|+.|.+.+| ++...+.+..++
T Consensus        97 -~~~i-~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~  173 (227)
T d1h6ua2          97 -LKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLS  173 (227)
T ss_dssp             -CSCC-GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCT
T ss_pred             -cccc-ccccccccccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccc-ccccchhhcccc
Confidence             3344 245566677777666521111110 00         0       00134678999998876 566666567889


Q ss_pred             CccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccccC
Q 028049          153 NLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       153 ~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                      +|++|+++++ +++.+.                .+..+++|++|+++++ +++.+.
T Consensus       174 ~L~~L~Ls~n-~l~~l~----------------~l~~l~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         174 KLTTLKADDN-KISDIS----------------PLASLPNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             TCCEEECCSS-CCCCCG----------------GGGGCTTCCEEECTTS-CCCBCG
T ss_pred             cceecccCCC-ccCCCh----------------hhcCCCCCCEEECcCC-cCCCCc
Confidence            9999999887 565542                2345788999999988 577765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=7.9e-09  Score=83.05  Aligned_cols=65  Identities=17%  Similarity=0.198  Sum_probs=40.7

Q ss_pred             CCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCcccccc
Q 028049          128 MPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLK  205 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~  205 (214)
                      ++.++.|.++++ ++..++.  +..+++|++|+++++ +++.++               .++..+++|++|++++. +++
T Consensus       194 ~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp---------------~~l~~l~~L~~L~Ls~N-~i~  255 (305)
T d1xkua_         194 LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVP---------------GGLADHKYIQVVYLHNN-NIS  255 (305)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCC---------------TTTTTCSSCCEEECCSS-CCC
T ss_pred             cccccccccccc-cccccccccccccccceeeecccc-cccccc---------------cccccccCCCEEECCCC-ccC
Confidence            445555666554 4555432  344566666666666 444443               36677899999999996 588


Q ss_pred             ccCCC
Q 028049          206 AYVHR  210 (214)
Q Consensus       206 ~i~~~  210 (214)
                      ++...
T Consensus       256 ~i~~~  260 (305)
T d1xkua_         256 AIGSN  260 (305)
T ss_dssp             CCCTT
T ss_pred             ccChh
Confidence            77543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=8.2e-09  Score=79.06  Aligned_cols=145  Identities=15%  Similarity=0.204  Sum_probs=87.8

Q ss_pred             CCCChhhhccCcccceEEccccCccccccccc-ccc-----cchhhHhhhhhccCCccCceeeEEecccchhhhccCCcc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEE-GKV-----LSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPK   75 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~-~~~-----~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~   75 (214)
                      +.++.  |..+++|++|++++++..+.+. +. ...     +....-..+..+..+++|+.+++.-.....++.+..   
T Consensus        59 ~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~~l~~---  132 (210)
T d1h6ta2          59 KSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH---  132 (210)
T ss_dssp             CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGGGGG---
T ss_pred             CCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccccccccccccccc---
Confidence            44554  7889999999999987744321 11 000     111010112234444555555554332222222221   


Q ss_pred             hhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCcc
Q 028049           76 LQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLK  155 (214)
Q Consensus        76 l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~  155 (214)
                       ...++.++++++. +... .....+++|+.+++.++.+..+.. .    ..+++|++|+++++ +++.++.+..+++|+
T Consensus       133 -l~~l~~l~~~~n~-l~~~-~~~~~l~~L~~l~l~~n~l~~i~~-l----~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~  203 (210)
T d1h6ta2         133 -LPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-L----AGLTKLQNLYLSKN-HISDLRALAGLKNLD  203 (210)
T ss_dssp             -CTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-G----TTCTTCCEEECCSS-CCCBCGGGTTCTTCS
T ss_pred             -ccccccccccccc-cccc-cccccccccccccccccccccccc-c----cCCCCCCEEECCCC-CCCCChhhcCCCCCC
Confidence             1356777776653 3333 235567889999988866665531 1    35899999999987 799998888899999


Q ss_pred             EEeEec
Q 028049          156 CLRILD  161 (214)
Q Consensus       156 ~L~i~~  161 (214)
                      +|++++
T Consensus       204 ~L~Ls~  209 (210)
T d1h6ta2         204 VLELFS  209 (210)
T ss_dssp             EEEEEE
T ss_pred             EEEccC
Confidence            999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.80  E-value=8.6e-09  Score=83.20  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=31.5

Q ss_pred             CCChhhhccCcccceEEcccc-CcccccccccccccchhhHhhhhhccCCccCceeeEEeccc
Q 028049            3 EIPQQLISSFSKLQVLRMLHC-GYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGS   64 (214)
Q Consensus         3 ~iP~~~i~~L~~Lq~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~   64 (214)
                      .||+. |++|++||+|++.++ .+.+               ....++..|++|+.|+++-...
T Consensus        67 ~lp~~-l~~L~~L~~L~Ls~~N~l~g---------------~iP~~i~~L~~L~~L~Ls~N~l  113 (313)
T d1ogqa_          67 PIPSS-LANLPYLNFLYIGGINNLVG---------------PIPPAIAKLTQLHYLYITHTNV  113 (313)
T ss_dssp             ECCGG-GGGCTTCSEEEEEEETTEES---------------CCCGGGGGCTTCSEEEEEEECC
T ss_pred             CCChH-HhcCcccccccccccccccc---------------ccccccccccccchhhhccccc
Confidence            47775 999999999999875 3311               1123466678888888775544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.1e-09  Score=86.24  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             ccccEEeecCCC-CCCchh--hhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCc--ccCCC
Q 028049           78 TITQALHIEDCN-SLPLNL--LHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--WLVFA  151 (214)
Q Consensus        78 ~~l~~L~l~~c~-~l~~l~--~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~~~~l  151 (214)
                      +.++.|++++|. .+..-.  .....+++|++|++++ ..+..-....   ...+++|++|.+++|+++..-.  .+..+
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~---l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG---GGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhh---hcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            568999999874 443321  2345678999999988 6665322211   2358999999999999886532  35678


Q ss_pred             CCccEEeEecC
Q 028049          152 PNLKCLRILDC  162 (214)
Q Consensus       152 ~~L~~L~i~~C  162 (214)
                      |+|++|++++|
T Consensus       225 ~~L~~L~l~~~  235 (284)
T d2astb2         225 PTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeeeCC
Confidence            99999999998

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=3.5e-08  Score=80.93  Aligned_cols=63  Identities=14%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             CCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccc
Q 028049          127 KMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKA  206 (214)
Q Consensus       127 ~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~  206 (214)
                      .+++++.++++++ +++.++.+..+|+|++|++++| .++.+.                .+..+++|++|+++++ +++.
T Consensus       305 ~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~L~L~~n-~l~~l~----------------~l~~l~~L~~L~l~~N-~l~~  365 (384)
T d2omza2         305 NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFANN-KVSDVS----------------SLANLTNINWLSAGHN-QISD  365 (384)
T ss_dssp             GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSS-CCCCCG----------------GGGGCTTCCEEECCSS-CCCB
T ss_pred             hhcccCeEECCCC-CCCCCcccccCCCCCEEECCCC-CCCCCh----------------hHcCCCCCCEEECCCC-cCCC
Confidence            5788999999886 7888877778999999999998 565442                2345788999998776 4555


Q ss_pred             cC
Q 028049          207 YV  208 (214)
Q Consensus       207 i~  208 (214)
                      +.
T Consensus       366 l~  367 (384)
T d2omza2         366 LT  367 (384)
T ss_dssp             CG
T ss_pred             Ch
Confidence            43

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.9e-08  Score=75.57  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             ccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccccccccchhhHHH
Q 028049          103 HLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEIISVENFEKLIEV  180 (214)
Q Consensus       103 ~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~  180 (214)
                      .++.|++.++.++.+....    ...++++++...++.+++.+|.  ...+++|++|++++.. ++.++.          
T Consensus       154 ~l~~L~l~~n~l~~i~~~~----~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~----------  218 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCA----FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS----------  218 (242)
T ss_dssp             SCEEEECCSSCCCEECTTT----TTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS----------
T ss_pred             cceeeeccccccccccccc----ccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH----------
Confidence            3455555555555543211    2345666777667778998875  5668999999998863 655532          


Q ss_pred             hhhcccCCCCCccCeeecCccccccccC
Q 028049          181 SEMMGELNLFSGLESLSLGNASNLKAYV  208 (214)
Q Consensus       181 ~~~~~~~~~f~~L~~L~l~~cp~L~~i~  208 (214)
                             ..|.+|..|..-++.+|+.++
T Consensus       219 -------~~~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         219 -------YGLENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             -------SSCTTCCEEESSSEESSSCSC
T ss_pred             -------HHHcCCcccccCcCCCCCcCC
Confidence                   234555555555556666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.5e-08  Score=77.35  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhcccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQ   81 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~   81 (214)
                      ++||.+ |.  +++|+|++++++....|               ...+..+++|+.++++......++....  .....++
T Consensus        24 ~~iP~~-ip--~~~~~L~Ls~N~i~~i~---------------~~~f~~l~~L~~L~ls~n~l~~i~~~~~--~~~~~~~   83 (284)
T d1ozna_          24 QAVPVG-IP--AASQRIFLHGNRISHVP---------------AASFRACRNLTILWLHSNVLARIDAAAF--TGLALLE   83 (284)
T ss_dssp             SSCCTT-CC--TTCSEEECTTSCCCEEC---------------TTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCC
T ss_pred             CccCCC-CC--CCCCEEECcCCcCCCCC---------------HHHhhccccccccccccccccccccccc--ccccccc
Confidence            467765 33  56788999988873321               1124455677777765433332221110  1112344


Q ss_pred             EEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEe
Q 028049           82 ALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLR  158 (214)
Q Consensus        82 ~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~  158 (214)
                      .+.+.....+..++ ..+..+++|+.|++.++.+..+....   ...+++|+.+.+.+. +++.+|.  +...++|+.|+
T Consensus        84 ~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             EEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccchhhcccccCCEEecCCcccccccccc---cchhcccchhhhccc-cccccChhHhccccchhhcc
Confidence            55555545554443 34556666666666653333332111   123445555555542 4555543  23345555555


Q ss_pred             EecC
Q 028049          159 ILDC  162 (214)
Q Consensus       159 i~~C  162 (214)
                      ++++
T Consensus       160 l~~N  163 (284)
T d1ozna_         160 LHGN  163 (284)
T ss_dssp             CCSS
T ss_pred             cccC
Confidence            5554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.2e-08  Score=77.03  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             CCCCChhhhccCcccceEEccccCccccccccccc--------ccch--hhHhhhhhccCCccCceeeEEecccchhhhc
Q 028049            1 MSEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGK--------VLSA--DAESLMKEIHCLEQLNLITLSLHGSRGVENF   70 (214)
Q Consensus         1 ~~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~--------~~~~--~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l   70 (214)
                      +++||.+.+.++++|++|++.++.....+......        ....  ........+..+++|+.+++.......+...
T Consensus        44 i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~  123 (284)
T d1ozna_          44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG  123 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCccccccccc
Confidence            46788888999999999999998763221111000        0000  0000122344555666665543322221111


Q ss_pred             cCCcchhccccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCc--c
Q 028049           71 LKFPKLQTITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLT--W  147 (214)
Q Consensus        71 ~~~~~l~~~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp--~  147 (214)
                        .-.....++.+++++. .+..++ ..+..+++|++|++.+++++.++....   ..+++|+.+.+.++ ++..++  .
T Consensus       124 --~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f---~~l~~L~~l~l~~N-~l~~i~~~~  196 (284)
T d1ozna_         124 --LFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLDRLLLHQN-RVAHVHPHA  196 (284)
T ss_dssp             --TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECCSS-CCCEECTTT
T ss_pred             --ccchhcccchhhhccc-cccccChhHhccccchhhcccccCcccccchhhh---ccccccchhhhhhc-cccccChhH
Confidence              1112234566666552 344443 345556667777776666665543221   23667777777765 444443  2


Q ss_pred             cCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCc
Q 028049          148 LVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGN  200 (214)
Q Consensus       148 ~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~  200 (214)
                      +..+++|++|+++++. +..++.              ..+..+++|++|++.+
T Consensus       197 f~~l~~L~~L~l~~N~-i~~~~~--------------~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         197 FRDLGRLMTLYLFANN-LSALPT--------------EALAPLRALQYLRLND  234 (284)
T ss_dssp             TTTCTTCCEEECCSSC-CSCCCH--------------HHHTTCTTCCEEECCS
T ss_pred             hhhhhhcccccccccc-cccccc--------------cccccccccCEEEecC
Confidence            5556777777776643 232321              1345678889888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.60  E-value=3.8e-08  Score=79.27  Aligned_cols=67  Identities=16%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             CCCCccEEeeecCcCCc-cCcc-cCCCCCccEEeEecCcccc-cccccccchhhHHHhhhcccCCCCCccCeeecCcccc
Q 028049          127 KMPKLHSVLIWNCSNVK-DLTW-LVFAPNLKCLRILDCDDME-EIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASN  203 (214)
Q Consensus       127 ~~~~L~~L~I~~C~~L~-~lp~-~~~l~~L~~L~i~~C~~l~-~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~  203 (214)
                      .+++|+.|+++++ +++ .+|. +..+++|++|+++++ ++. .++                ....+++|+.+.+.+-+.
T Consensus       242 ~~~~L~~L~Ls~N-~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP----------------~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         242 LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIP----------------QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSS-EEEEECC----------------CSTTGGGSCGGGTCSSSE
T ss_pred             cccccccccCccC-eecccCChHHhCCCCCCEEECcCC-cccccCC----------------CcccCCCCCHHHhCCCcc
Confidence            4677888888775 555 5663 667788888888775 333 221                334567788888887765


Q ss_pred             ccccCCCCCCC
Q 028049          204 LKAYVHRSLEH  214 (214)
Q Consensus       204 L~~i~~~~lp~  214 (214)
                      |   |+.++|+
T Consensus       304 l---~g~plp~  311 (313)
T d1ogqa_         304 L---CGSPLPA  311 (313)
T ss_dssp             E---ESTTSSC
T ss_pred             c---cCCCCCC
Confidence            4   4445664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.6e-07  Score=72.62  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=54.3

Q ss_pred             CCCChhhhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch-hhhccCCcchhccc
Q 028049            2 SEIPQQLISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG-VENFLKFPKLQTIT   80 (214)
Q Consensus         2 ~~iP~~~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~l   80 (214)
                      ..||.+ +.  +++++|++.+++....+               -..+..+++|+.++++-..... ++. ..+.. ...+
T Consensus        21 ~~iP~~-l~--~~l~~L~Ls~n~i~~l~---------------~~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~~-l~~l   80 (242)
T d1xwdc1          21 TEIPSD-LP--RNAIELRFVLTKLRVIQ---------------KGAFSGFGDLEKIEISQNDVLEVIEA-DVFSN-LPKL   80 (242)
T ss_dssp             SSCCSC-SC--SCCSEEEEESCCCCEEC---------------TTTTTTCTTCCEEEEESCTTCCEECS-SSEES-CTTC
T ss_pred             CCcCCC-CC--CCCCEEECcCCcCCccC---------------hhHhhccchhhhhhhccccccceeec-ccccc-cccc
Confidence            467765 32  47889999988773221               1124566788888876433211 110 00111 1346


Q ss_pred             cEEeecCCCCCCchh-hhcccccccchhhccccccce
Q 028049           81 QALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLED  116 (214)
Q Consensus        81 ~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~  116 (214)
                      +.+.+..+..+..+. ..+..+++|+++++.++.+..
T Consensus        81 ~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccccccccchhhhcc
Confidence            677777776665554 446677788888877744443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.9e-08  Score=74.16  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=54.3

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      +.+..+|++|++++++....+             ..   ...+++|+.|+++...+..++.+.   . .+.++.|+++++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~-------------~~---~~~l~~L~~L~Ls~N~i~~l~~~~---~-l~~L~~L~ls~N   73 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIE-------------NL---GATLDQFDAIDFSDNEIRKLDGFP---L-LRRLKTLLVNNN   73 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCC-------------CG---GGGTTCCSEEECCSSCCCEECCCC---C-CSSCCEEECCSS
T ss_pred             ccCcCcCcEEECCCCCCCccC-------------cc---ccccccCCEEECCCCCCCccCCcc---c-Ccchhhhhcccc
Confidence            456678888998888873210             00   133566777776654444333221   1 234666666665


Q ss_pred             CCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecC
Q 028049           89 NSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        89 ~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C  139 (214)
                      . +..++ ..+..+++|++|++.++.+..+..  ......+++|+.|.+.+|
T Consensus        74 ~-i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~--l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          74 R-ICRIGEGLDQALPDLTELILTNNSLVELGD--LDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             C-CCEECSCHHHHCTTCCEEECCSCCCCCGGG--GGGGGGCTTCCEEECCSS
T ss_pred             c-ccCCCccccccccccccceecccccccccc--ccccccccccchhhcCCC
Confidence            3 34433 223345566666665544443321  000123556666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.42  E-value=2.6e-09  Score=81.47  Aligned_cols=106  Identities=15%  Similarity=0.306  Sum_probs=47.6

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccchhhhccCCcchhccccEEeecCC
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDC   88 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c   88 (214)
                      ++.|++|++|++.+++...                 ++.+..+++|+.|+++-..+..++.+   ....+.++.|+++++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~-----------------i~~l~~l~~L~~L~Ls~N~i~~i~~~---~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK-----------------ISSLSGMENLRILSLGRNLIKKIENL---DAVADTLEELWISYN  103 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC-----------------CCCHHHHTTCCEEECCEEEECSCSSH---HHHHHHCCEEECSEE
T ss_pred             HhcccccceeECcccCCCC-----------------cccccCCccccChhhccccccccccc---ccccccccccccccc
Confidence            6666666666666665411                 11233345555555543333322221   122234555665553


Q ss_pred             CCCCchhhhcccccccchhhccccccceeec-ccccccCCCCCccEEeeecC
Q 028049           89 NSLPLNLLHLANMEHLEKLFIEESNLEDWNV-DCAGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        89 ~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~-~~~~~~~~~~~L~~L~I~~C  139 (214)
                       .+..+. .+..+++|+.|+++++.+..+.. +.   ...+++|+.|.++++
T Consensus       104 -~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~---l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         104 -QIASLS-GIEKLVNLRVLYMSNNKITNWGEIDK---LAALDKLEDLLLAGN  150 (198)
T ss_dssp             -ECCCHH-HHHHHHHSSEEEESEEECCCHHHHHH---HTTTTTCSEEEECSS
T ss_pred             -cccccc-cccccccccccccccchhcccccccc---ccCCCccceeecCCC
Confidence             344432 34445555555555544333210 11   123555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=1.1e-06  Score=61.47  Aligned_cols=77  Identities=26%  Similarity=0.350  Sum_probs=48.8

Q ss_pred             ccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc---cCCCCCc
Q 028049           78 TITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW---LVFAPNL  154 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~---~~~l~~L  154 (214)
                      ..+++|++++ ..++.++..+..+++|+.|+++++.++.++.     ...+++|+.|++.+. +++.++.   +..+++|
T Consensus        20 ~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-----~~~l~~L~~L~l~~N-~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          20 LLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTC
T ss_pred             CCCCEEECCC-CccCcchhhhhhhhcccccccccccccccCc-----cccccccCeEECCCC-ccCCCCCchhhcCCCCC
Confidence            3577777765 3556665456667777777777766655431     135777777777764 5555542   4456777


Q ss_pred             cEEeEec
Q 028049          155 KCLRILD  161 (214)
Q Consensus       155 ~~L~i~~  161 (214)
                      +.|++++
T Consensus        93 ~~L~l~~   99 (124)
T d1dcea3          93 VLLNLQG   99 (124)
T ss_dssp             CEEECTT
T ss_pred             CEEECCC
Confidence            7777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.8e-07  Score=65.85  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=72.5

Q ss_pred             cCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCCC
Q 028049           49 HCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQKM  128 (214)
Q Consensus        49 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~  128 (214)
                      .....++.|+++...++.++.+.   ...+.++.|++++. .+..+ ..++.+++|++|+++++.+..++....   ..+
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~---~~l~~L~~L~Ls~N-~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~---~~l   86 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLG---ATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD---QAL   86 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGG---GGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH---HHC
T ss_pred             cCcCcCcEEECCCCCCCccCccc---cccccCCEEECCCC-CCCcc-CCcccCcchhhhhcccccccCCCcccc---ccc
Confidence            34456777877766555555442   22356888999885 56666 356778888999988877777643211   247


Q ss_pred             CCccEEeeecCcCCccCc---ccCCCCCccEEeEecCc
Q 028049          129 PKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDCD  163 (214)
Q Consensus       129 ~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C~  163 (214)
                      ++|+.|++.++ +++.++   .+..+|+|++|++++++
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            88999999886 566654   35567889999998874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.26  E-value=4.1e-06  Score=67.08  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             CCCCccEEeeecCcCCccCcccCCCCCccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccccccc
Q 028049          127 KMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNASNLKA  206 (214)
Q Consensus       127 ~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp~L~~  206 (214)
                      .+++|++|++++| +++.+|.  .+++|+.|++++| ++++++.                  ..++|++|++++++ |++
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp~--~~~~L~~L~L~~N-~L~~l~~------------------~~~~L~~L~L~~N~-L~~  338 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELPA--LPPRLERLIASFN-HLAEVPE------------------LPQNLKQLHVEYNP-LRE  338 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSCCCC------------------CCTTCCEEECCSSC-CSS
T ss_pred             cCCCCCEEECCCC-ccCcccc--ccCCCCEEECCCC-cCCcccc------------------ccCCCCEEECcCCc-CCC
Confidence            4678999999887 7888874  3788999999766 4554432                  24689999999997 888


Q ss_pred             cCC
Q 028049          207 YVH  209 (214)
Q Consensus       207 i~~  209 (214)
                      ++.
T Consensus       339 lp~  341 (353)
T d1jl5a_         339 FPD  341 (353)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=6.9e-07  Score=62.52  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049           48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK  127 (214)
Q Consensus        48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~  127 (214)
                      ++.+.+|+.|+++-.....++.-  +. -.++++.|++++ ..++.++ .+..+++|++|++.++.+..++.-  +....
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~--~~-~l~~L~~L~l~~-N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~   88 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPA--LA-ALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNNRLQQSAAI--QPLVS   88 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGG--GG-GCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSSCCCSSSTT--GGGGG
T ss_pred             cccCCCCCEEECCCCccCcchhh--hh-hhhccccccccc-ccccccC-ccccccccCeEECCCCccCCCCCc--hhhcC
Confidence            34445555555554433333211  11 123566666665 3444443 455666777777766555444210  11124


Q ss_pred             CCCccEEeeec
Q 028049          128 MPKLHSVLIWN  138 (214)
Q Consensus       128 ~~~L~~L~I~~  138 (214)
                      +++|+.|++++
T Consensus        89 ~~~L~~L~l~~   99 (124)
T d1dcea3          89 CPRLVLLNLQG   99 (124)
T ss_dssp             CTTCCEEECTT
T ss_pred             CCCCCEEECCC
Confidence            66777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.10  E-value=2.3e-06  Score=63.99  Aligned_cols=61  Identities=10%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             hcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEec
Q 028049           97 HLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILD  161 (214)
Q Consensus        97 ~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~  161 (214)
                      .+..+++|++|+++++.+..++.+.-   ..+++|++|++++. +++.++.  +..+++|++|++.+
T Consensus        73 ~~~~~~~L~~L~Ls~N~l~~l~~~~F---~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          73 AFEGASHIQELQLGENKIKEISNKMF---LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             TTTTCTTCCEEECCSCCCCEECSSSS---TTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred             ccccccccceeeeccccccccCHHHH---hCCCcccccccCCc-cccccCHHHhcCCcccccccccc
Confidence            34455666666666666665543221   24666777777663 6666653  34566677777655

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.96  E-value=1.3e-05  Score=59.71  Aligned_cols=105  Identities=18%  Similarity=0.284  Sum_probs=76.2

Q ss_pred             ccccEEeecCCCCCCc-hh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCC
Q 028049           78 TITQALHIEDCNSLPL-NL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPN  153 (214)
Q Consensus        78 ~~l~~L~l~~c~~l~~-l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~  153 (214)
                      ..++.|+|++- .+.. +. ..+..+++|++|++.++.+..+....   ...+++|++|++++. +++.++.  +..+++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~---~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA---FEGASHIQELQLGEN-KIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT---TTTCTTCCEEECCSC-CCCEECSSSSTTCTT
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccc---cccccccceeeeccc-cccccCHHHHhCCCc
Confidence            57888999874 3432 22 45678899999999887776654322   235889999999985 8999874  567999


Q ss_pred             ccEEeEecCcccccccccccchhhHHHhhhcccCCCCCccCeeecCccc
Q 028049          154 LKCLRILDCDDMEEIISVENFEKLIEVSEMMGELNLFSGLESLSLGNAS  202 (214)
Q Consensus       154 L~~L~i~~C~~l~~i~~~~~~~~l~~~~~~~~~~~~f~~L~~L~l~~cp  202 (214)
                      |++|++++. +++.+..              ..+..+++|++|++.+-|
T Consensus       104 L~~L~L~~N-~l~~i~~--------------~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         104 LKTLNLYDN-QISCVMP--------------GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSS-CCCEECT--------------TSSTTCTTCCEEECTTCC
T ss_pred             ccccccCCc-cccccCH--------------HHhcCCcccccccccccc
Confidence            999999885 5666543              245567888888887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.95  E-value=5.3e-08  Score=73.99  Aligned_cols=105  Identities=14%  Similarity=0.106  Sum_probs=70.0

Q ss_pred             ccCCccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchhhhcccccccchhhccccccceeecccccccCC
Q 028049           48 IHCLEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNLLHLANMEHLEKLFIEESNLEDWNVDCAGEVQK  127 (214)
Q Consensus        48 L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~  127 (214)
                      +..+++|+.|+++-..+..++.+.    -.++|+.|+++++ .+..++.....+++|+.|++.++.++.+.. .    ..
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~----~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~----~~  113 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLS----GMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSG-I----EK  113 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHH----HHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHH-H----HH
T ss_pred             HhcccccceeECcccCCCCccccc----CCccccChhhccc-cccccccccccccccccccccccccccccc-c----cc
Confidence            455677777777655444443321    2357899999876 345543222334678999998876665531 1    24


Q ss_pred             CCCccEEeeecCcCCccCc---ccCCCCCccEEeEecCc
Q 028049          128 MPKLHSVLIWNCSNVKDLT---WLVFAPNLKCLRILDCD  163 (214)
Q Consensus       128 ~~~L~~L~I~~C~~L~~lp---~~~~l~~L~~L~i~~C~  163 (214)
                      +++|+.|+++++ +++.++   .+..+++|+.|++++++
T Consensus       114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            789999999875 666664   36779999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.81  E-value=3e-05  Score=61.75  Aligned_cols=58  Identities=19%  Similarity=0.226  Sum_probs=45.9

Q ss_pred             ccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcccCCCCCccEEeEecCccccccc
Q 028049          101 MEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWLVFAPNLKCLRILDCDDMEEII  169 (214)
Q Consensus       101 l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~~~l~~L~~L~i~~C~~l~~i~  169 (214)
                      +++|++|+++++++..++.       .+++|++|++++| +++.+|.  .+++|++|++++|+ ++.++
T Consensus       283 ~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSNNKLIELPA-------LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSSCC
T ss_pred             CCCCCEEECCCCccCcccc-------ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CCCCC
Confidence            4689999998877776641       3789999999876 7888885  36789999999985 77664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6.4e-05  Score=54.16  Aligned_cols=79  Identities=23%  Similarity=0.217  Sum_probs=58.5

Q ss_pred             cccEEeecCCCCCCchh-hhcccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCcc-cCCCCCccE
Q 028049           79 ITQALHIEDCNSLPLNL-LHLANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW-LVFAPNLKC  156 (214)
Q Consensus        79 ~l~~L~l~~c~~l~~l~-~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~-~~~l~~L~~  156 (214)
                      .++.|++.+.+.++.++ ..+.++++|+.|+++++++..+..+.   -..+++|++|++++. +++.+|. .....+|+.
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~---f~~l~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~  107 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA---FHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQE  107 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG---GGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCE
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc---ccccccccceeccCC-CCcccChhhhccccccc
Confidence            56777777666677665 56788889999999888888775332   135889999999874 8888886 334557899


Q ss_pred             EeEec
Q 028049          157 LRILD  161 (214)
Q Consensus       157 L~i~~  161 (214)
                      |++.+
T Consensus       108 L~L~~  112 (156)
T d2ifga3         108 LVLSG  112 (156)
T ss_dssp             EECCS
T ss_pred             cccCC
Confidence            99875

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0002  Score=51.38  Aligned_cols=73  Identities=22%  Similarity=0.327  Sum_probs=54.1

Q ss_pred             Cchhhhcccccccchhhccc-cccceeecccccccCCCCCccEEeeecCcCCccCcc--cCCCCCccEEeEecCcccccc
Q 028049           92 PLNLLHLANMEHLEKLFIEE-SNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTW--LVFAPNLKCLRILDCDDMEEI  168 (214)
Q Consensus        92 ~~l~~~l~~l~~L~~L~i~~-~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~--~~~l~~L~~L~i~~C~~l~~i  168 (214)
                      .+.+..++.+++|++|++.+ +.++.+..+.-   ..+++|+.|++++. +++.++.  +..+++|++|++++. +++.+
T Consensus        21 ~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f---~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l   95 (156)
T d2ifga3          21 LDSLHHLPGAENLTELYIENQQHLQHLELRDL---RGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESL   95 (156)
T ss_dssp             CTTTTTSCSCSCCSEEECCSCSSCCEECGGGS---CSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCC
T ss_pred             ccCcccccCccccCeeecCCCccccccCchhh---ccccccCcceeecc-ccCCcccccccccccccceeccCC-CCccc
Confidence            34444567778899999987 67888754321   35899999999986 8999864  567899999999874 45555


Q ss_pred             c
Q 028049          169 I  169 (214)
Q Consensus       169 ~  169 (214)
                      .
T Consensus        96 ~   96 (156)
T d2ifga3          96 S   96 (156)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.96  E-value=0.001  Score=53.22  Aligned_cols=17  Identities=0%  Similarity=-0.097  Sum_probs=9.4

Q ss_pred             hccCcccceEEccccCc
Q 028049            9 ISSFSKLQVLRMLHCGY   25 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~   25 (214)
                      +.+..+|++|++.++..
T Consensus        27 L~~~~~l~~L~Ls~n~i   43 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTI   43 (344)
T ss_dssp             HHHCSCCCEEECTTSEE
T ss_pred             HhhCCCCCEEECcCCcC
Confidence            34455566666665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.93  E-value=0.00084  Score=53.68  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=16.7

Q ss_pred             CCCCccEEeeecCcCCcc-----Cc-ccCCCCCccEEeEecC
Q 028049          127 KMPKLHSVLIWNCSNVKD-----LT-WLVFAPNLKCLRILDC  162 (214)
Q Consensus       127 ~~~~L~~L~I~~C~~L~~-----lp-~~~~l~~L~~L~i~~C  162 (214)
                      ..++|+.|++++++ +..     +. .+...++|++|++++|
T Consensus       213 ~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n  253 (344)
T d2ca6a1         213 YCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC  253 (344)
T ss_dssp             GCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             chhhhccccccccc-ccccccccccccccccccchhhhhhcC
Confidence            34556666665542 211     11 1233555666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.0058  Score=49.48  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=53.8

Q ss_pred             cccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEeecCCCC
Q 028049           13 SKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHIEDCNS   90 (214)
Q Consensus        13 ~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l~~c~~   90 (214)
                      .+||+|||++.+..+              ....+-++.+++++.+++.-.++.  +++.+...-+-.+.|+.|+++++ .
T Consensus         2 ~~l~~ld~~~~~i~~--------------~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~   66 (460)
T d1z7xw1           2 LDIQSLDIQCEELSD--------------ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-E   66 (460)
T ss_dssp             EEEEEEEEESCCCCH--------------HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-C
T ss_pred             CCCCEEEeeCCcCCh--------------HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-c
Confidence            478999998887721              111222455577777777644332  22222111011235777888765 3


Q ss_pred             CCchh-----hhccc-ccccchhhccccccceeeccc-ccccCCCCCccEEeeecC
Q 028049           91 LPLNL-----LHLAN-MEHLEKLFIEESNLEDWNVDC-AGEVQKMPKLHSVLIWNC  139 (214)
Q Consensus        91 l~~l~-----~~l~~-l~~L~~L~i~~~~l~~l~~~~-~~~~~~~~~L~~L~I~~C  139 (214)
                      +....     ..+.. -.+|++|++.++.+....... .......++|++|.+.++
T Consensus        67 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            32211     11211 135777777664443221100 000124567777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.015  Score=46.91  Aligned_cols=92  Identities=20%  Similarity=0.305  Sum_probs=56.9

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccch--hhhccCC-cchhccccEEe
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSRG--VENFLKF-PKLQTITQALH   84 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~--l~~l~~~-~~l~~~l~~L~   84 (214)
                      .+..+++||+|+|.+|....           .......+.+...++|+.|+++-.....  ++.+... ......++.|+
T Consensus        22 l~~~l~~l~~L~L~~~~i~~-----------~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~   90 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTE-----------ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS   90 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCH-----------HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred             HHHhCCCCCEEEeCCCCCCH-----------HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEE
Confidence            35678999999999998621           1122333446777889999886444321  2222211 11123689999


Q ss_pred             ecCCCCCCch-----hhhcccccccchhhccc
Q 028049           85 IEDCNSLPLN-----LLHLANMEHLEKLFIEE  111 (214)
Q Consensus        85 l~~c~~l~~l-----~~~l~~l~~L~~L~i~~  111 (214)
                      +++|. ++..     ...+...++|++|++.+
T Consensus        91 L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          91 LQNCC-LTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             CTTSC-CBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             CCCCC-ccccccccccchhhcccccccccccc
Confidence            99984 5432     13456677888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.0059  Score=43.51  Aligned_cols=62  Identities=16%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             CccCceeeEEecccchhhhccCCcchhccccEEeecCCCCCCchh--hhcccccccchhhcccccc
Q 028049           51 LEQLNLITLSLHGSRGVENFLKFPKLQTITQALHIEDCNSLPLNL--LHLANMEHLEKLFIEESNL  114 (214)
Q Consensus        51 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~l~~L~l~~c~~l~~l~--~~l~~l~~L~~L~i~~~~l  114 (214)
                      +++|+.|+++-....+++.+...-...+.++.|++++ ..+.++.  ..+. ..+|+.|++.++.+
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~-~~~L~~L~L~~Npl  127 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GLKLEELWLDGNSL  127 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHT-TCCCSSCCCTTSTT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCccccccccc-Cccccchhhhhhh-ccccceeecCCCCc
Confidence            4556666655444443332221111124566677766 3444443  1122 23567777766333

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.81  E-value=0.012  Score=41.89  Aligned_cols=62  Identities=21%  Similarity=0.174  Sum_probs=35.9

Q ss_pred             ccccccchhhccccccceeecccccccCCCCCccEEeeecCcCCccCccc--CCCCCccEEeEecC
Q 028049           99 ANMEHLEKLFIEESNLEDWNVDCAGEVQKMPKLHSVLIWNCSNVKDLTWL--VFAPNLKCLRILDC  162 (214)
Q Consensus        99 ~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~~L~~L~I~~C~~L~~lp~~--~~l~~L~~L~i~~C  162 (214)
                      ..+++|++|+++++.+..+..- .+....+++|+.|++++ +++++++.+  ....+|+.|++.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~-~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDM-SSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGG-GTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             HhCCCCCEeeCCCccccCCchh-HHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCC
Confidence            3566778888777666554210 01112477788888877 366666531  22345677777664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.19  E-value=0.23  Score=34.84  Aligned_cols=42  Identities=10%  Similarity=0.107  Sum_probs=23.6

Q ss_pred             hccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEE
Q 028049            9 ISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLS   60 (214)
Q Consensus         9 i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~   60 (214)
                      ..+-++|++|++.++...+          ..........+..-++|+.|+++
T Consensus        11 ~~n~~~L~~L~L~~~~~i~----------~~~~~~l~~~L~~n~~L~~L~Ls   52 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVS----------KERIRSLIEAACNSKHIEKFSLA   52 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSC----------HHHHHHHHHHHTTCSCCCEEECT
T ss_pred             HhCCCCCcEEEeCCCCCCC----------HHHHHHHHHHHhhCCccceeecc
Confidence            3456889999998764311          01122234445555667776654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.05  E-value=0.34  Score=33.66  Aligned_cols=72  Identities=7%  Similarity=0.028  Sum_probs=37.7

Q ss_pred             hhccCcccceEEccccCcccccccccccccchhhHhhhhhccCCccCceeeEEecccc--hhhhccCCcchhccccEEee
Q 028049            8 LISSFSKLQVLRMLHCGYAHRSIVEEGKVLSADAESLMKEIHCLEQLNLITLSLHGSR--GVENFLKFPKLQTITQALHI   85 (214)
Q Consensus         8 ~i~~L~~Lq~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~l~~L~l   85 (214)
                      +..+-++|++|++.++...+          ..........+...++|+.|+++.....  +...+...-+..+.++.+++
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~----------~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l   81 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIP----------VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV   81 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCC----------HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHhcCCCCcEEEcCCCCCCC----------HHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhh
Confidence            34677899999998754311          1122334455666778888776643321  12222111111245667777


Q ss_pred             cCCC
Q 028049           86 EDCN   89 (214)
Q Consensus        86 ~~c~   89 (214)
                      ++|.
T Consensus        82 ~~~~   85 (166)
T d1io0a_          82 ESNF   85 (166)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            6653