Citrus Sinensis ID: 028057

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHcccccHHHHHHcEEcccccccccccEEEEccccccccccccccccccccHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHcccEEEEEcccccccHHHHHccccccccccccccccccHHHHHHHHcccccccEEEEEEEcEEccHHHHHHHHHcccccccEEEEEEEcccEEEEEccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccccccccccccccccEEEEEEEEccccEEEcccEEEEccccccccccccccccccccHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHcccEEEEEEccccccHHHHHHHcccccccccccccccccHHHHHHHcccccccEEEEEEEcEEccHHHHHHHHHcccccccEEEEEEEccccEEEEccHHHHHcccccccc
Coil and Loop (DISEMBL)
maaapclhygtpasikiqqkqqptrNWMMMQGLrrrngkaskrvgvtncsgnsgieigdfiggdllkpdlgrwLSDVEKHKAIAiytpheggyegryLNRLRYLGYYFLdlsarglgdpettltkvypvcpqpiarwyfppevdyrlaalppsakGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAgltqegaa
Flexible Loop (DISEMBL)
maaapclhygtpasikiqqkqqpTRNWMMMQGLRrrngkaskrvgvtncsgnsgieigdfigGDLLKPDLGRWLSDVEKHKAIaiytpheggyegRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFlallptlrpkvRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Low Complexity Region (SEG)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEggyegrylnrlrylgyyflDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Disordered region (IsUnstruct)
*******************************************VGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG*******
Disordered Region (DISOPRED)
*********GTP*SI**************************************GIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEI*********
Disordered Region (DISEMBL)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Disordered Region (DISPRO)
*****CLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAPCLHYGTPASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
B8HUU1	158	NAD(P)H-quinone oxidoredu	yes	no	0.630	0.854	0.448	2e-30
Q8YPH8	162	NAD(P)H-quinone oxidoredu	yes	no	0.612	0.808	0.447	1e-28
B7JYJ3	158	NAD(P)H-quinone oxidoredu	yes	no	0.621	0.841	0.434	2e-28
Q3MFC2	162	NAD(P)H-quinone oxidoredu	yes	no	0.612	0.808	0.447	4e-28
B2ITQ6	158	NAD(P)H-quinone oxidoredu	yes	no	0.612	0.829	0.433	1e-27
Q110A6	158	NAD(P)H-quinone oxidoredu	yes	no	0.612	0.829	0.440	1e-27
B7KEE5	158	NAD(P)H-quinone oxidoredu	yes	no	0.616	0.835	0.395	4e-26
Q5N0W6	158	NAD(P)H-quinone oxidoredu	yes	no	0.630	0.854	0.428	6e-26
Q31L05	158	NAD(P)H-quinone oxidoredu	yes	no	0.630	0.854	0.428	6e-26
B1WYX9	158	NAD(P)H-quinone oxidoredu	yes	no	0.621	0.841	0.406	1e-25

>sp|B8HUU1|NDHN_CYAP4 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndhN PE=3 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 12/147 (8%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           +++ D+EK  A+ IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT+V+ V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

Query: 132 QPIAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLP 179
             + +            ++ PP V+Y L  LPP A+GLV+W+I+ K LS+ EL +L++LP
Sbjct: 69  PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128

Query: 180 TLRPKVRVIAECGNWRKFMWKPLKEIA 206
              PKV+++ E G  R+F W+PLKE+A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|Q8YPH8|NDHN_NOSS1 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhN PE=3 SV=1

 Score =  125 bits (315), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 86/143 (60%), Gaps = 12/143 (8%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQP 133
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70

Query: 134 IAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTL 181
           + +            +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP+L
Sbjct: 71  LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTSLPSL 130

Query: 182 RPKVRVIAECGNWRKFMWKPLKE 204
            P+V+V+ E G  R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B7JYJ3|NDHN_CYAP8 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 8801) GN=ndhN PE=3 SV=1

 Score =  125 bits (315), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 91/145 (62%), Gaps = 12/145 (8%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQ 132
           ++  +EK  ++A+Y P EGG+EGRY  RLR  GY+   L+ARGLGD    L  V+ V P 
Sbjct: 10  FIRALEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPP 69

Query: 133 PIAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPT 180
            + +            ++ PP   Y+L  LPP +KGLV+WI+E  +LS++EL++LA LPT
Sbjct: 70  HLGKKNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPT 129

Query: 181 LRPKVRVIAECGNWRKFMWKPLKEI 205
           L P+++V+ E G  R F WKPL E+
Sbjct: 130 LEPRLKVVIELGGERYFSWKPLPEV 154

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3MFC2|NDHN_ANAVT NAD(P)H-quinone oxidoreductase subunit N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhN PE=3 SV=1

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 12/143 (8%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQP 133
           + D+EK  ++ +Y P EGG+EGRY  RLR  GY  L  +ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKFGSVGVYVPLEGGFEGRYRRRLRAAGYTTLQFTARGLGDVAAYLTGVHGVRPPH 70

Query: 134 IAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTL 181
           + +            +Y PP V  +L  LPP +KGLV+WIIE  +LS  E++FL  LP L
Sbjct: 71  LGKKSSGNGAAVGNVYYLPPIVGSQLEHLPPKSKGLVLWIIEGHILSDQEVEFLTDLPKL 130

Query: 182 RPKVRVIAECGNWRKFMWKPLKE 204
            P+V+V+ E G  R F WK LK+
Sbjct: 131 EPRVKVVVERGGDRTFRWKALKD 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B2ITQ6|NDHN_NOSP7 NAD(P)H-quinone oxidoreductase subunit N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhN PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 12/143 (8%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQP 133
           + D+EK  A+ +Y P EGGYEGRY  RLR  GY  L ++A+GLGD    LT+++ V P  
Sbjct: 11  IRDLEKFGALGVYVPLEGGYEGRYQRRLRAAGYTTLHITAKGLGDVAAYLTRIHGVRPPH 70

Query: 134 IAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTL 181
           + +            +Y PP +D  L  LPP +KGLV+WIIE  +LS  EL++L  LP L
Sbjct: 71  LGKKSTGSGAAVGQVYYLPPILDSHLEQLPPKSKGLVLWIIEGHILSNEELEYLTNLPQL 130

Query: 182 RPKVRVIAECGNWRKFMWKPLKE 204
            P+V+V+ E G  R F W  L++
Sbjct: 131 EPRVKVVIERGGDRAFRWTSLEK 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q110A6|NDHN_TRIEI NAD(P)H-quinone oxidoreductase subunit N OS=Trichodesmium erythraeum (strain IMS101) GN=ndhN PE=3 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 88/143 (61%), Gaps = 12/143 (8%)

Query: 74  LSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQP 133
           + D+EK  ++A+Y P EGG+EGRY  RLR  GY    ++ARGLGD    LT V+ V P  
Sbjct: 11  IRDLEKSGSLAVYPPLEGGFEGRYQRRLRASGYVSESITARGLGDLAMYLTGVHGVRPPH 70

Query: 134 IAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTL 181
           + +            +Y PP V+Y+L  LPP AKGLV+WI+E ++LS  E+++L +LP  
Sbjct: 71  LGKKTVGNGPAVGYVYYVPPIVNYKLEHLPPKAKGLVLWIMEGQILSSQEIEYLTVLPKS 130

Query: 182 RPKVRVIAECGNWRKFMWKPLKE 204
            P+V+VI E G  R F W PL+ 
Sbjct: 131 EPRVKVIVEMGGDRFFRWTPLQN 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B7KEE5|NDHN_CYAP7 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7424) GN=ndhN PE=3 SV=1

 Score =  117 bits (294), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 12/144 (8%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQ 132
           ++  +EK  A+ +Y P EGG+EGRY  RLR  GY   +L+ARGLGD  + LT ++ V P 
Sbjct: 10  FIRALEKSGALGVYVPLEGGFEGRYQRRLRANGYTPYNLTARGLGDLSSYLTGIHGVRPP 69

Query: 133 PIAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPT 180
            + +            ++ PP   Y+L  LPP +KGLV+WIIE  +LS++E+++L  LP 
Sbjct: 70  HLGKKNIGQDAAVGPVYFVPPIATYQLETLPPKSKGLVLWIIEGMILSRAEIEYLTYLPQ 129

Query: 181 LRPKVRVIAECGNWRKFMWKPLKE 204
             P+++++ E G  R F W+PL++
Sbjct: 130 QEPRLKIVVEMGGERYFRWQPLEQ 153

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q5N0W6|NDHN_SYNP6 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 84/147 (57%), Gaps = 12/147 (8%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 132 QPIARW------------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLP 179
             + +             Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 180 TLRPKVRVIAECGNWRKFMWKPLKEIA 206
              P+++V+ E G  R F W+PL  +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q31L05|NDHN_SYNE7 NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 84/147 (57%), Gaps = 12/147 (8%)

Query: 72  RWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP 131
           ++L  +E+  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDP   L  ++ V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 132 QPIARW------------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLP 179
             + +             Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 180 TLRPKVRVIAECGNWRKFMWKPLKEIA 206
              P+++V+ E G  R F W+PL  +A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVA 155

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|B1WYX9|NDHN_CYAA5 NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain ATCC 51142) GN=ndhN PE=3 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/145 (40%), Positives = 87/145 (60%), Gaps = 12/145 (8%)

Query: 73  WLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCPQ 132
           ++  +EK  A+ +Y P EGG+EGRY  RLR  GY  L L+ARGLGD    L  V+ V P 
Sbjct: 10  FVRALEKSGALGVYAPLEGGFEGRYQRRLRTNGYDSLSLTARGLGDVSAYLMGVHGVRPP 69

Query: 133 PIAR------------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPT 180
            + +            ++ PP   Y+L +L P +KGLV+WI+E  +LSK+EL++L  LP 
Sbjct: 70  HLGKKNIGQGAAVGPIYFVPPIAAYQLESLSPQSKGLVLWILEGYILSKAELEYLVSLPQ 129

Query: 181 LRPKVRVIAECGNWRKFMWKPLKEI 205
             P+++V+ E G  R F W+PL+ +
Sbjct: 130 QEPRIKVVVELGGERYFRWEPLENL 154

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
356569983	229	PREDICTED: NAD(P)H-quinone oxidoreductas	0.976	0.912	0.679	3e-81
255646756	229	unknown [Glycine max]	0.976	0.912	0.675	1e-80
118489764	231	unknown [Populus trichocarpa x Populus d	0.962	0.891	0.693	3e-80
357460593	224	NAD(P)H-quinone oxidoreductase subunit N	0.976	0.933	0.689	2e-79
224124860	191	predicted protein [Populus trichocarpa]	0.869	0.973	0.753	1e-76
255584394	226	conserved hypothetical protein [Ricinus	0.971	0.920	0.687	1e-75
363807976	192	uncharacterized protein LOC100777422 [Gl	0.845	0.942	0.758	1e-75
359478527	187	PREDICTED: NAD(P)H-quinone oxidoreductas	0.705	0.807	0.871	2e-74
15237153	209	oxidoreductase [Arabidopsis thaliana] gi	0.757	0.775	0.784	4e-72
357126207	210	PREDICTED: NAD(P)H-quinone oxidoreductas	0.728	0.742	0.807	7e-72

>gi|356569983|ref|XP_003553172.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Glycine max]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/234 (67%), Positives = 179/234 (76%), Gaps = 25/234 (10%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVW 160
           YYFLDL+ARGLGDPETTLTK++PVCP     QPIARWYFPPEVDYRL ALPP+AKGLVVW
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVW 175

Query: 161 IIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 214
           IIEAKVLSK+ELQFLALLPTLRP VRVIAECGNWRKFMWKPLKEIAGLT    A
Sbjct: 176 IIEAKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLKEIAGLTTSEEA 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646756|gb|ACU23851.1| unknown [Glycine max]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/234 (67%), Positives = 178/234 (76%), Gaps = 25/234 (10%)

Query: 1   MAAAPCLHYGTPA---SIKIQQKQQPTRNWMM---------MQGLRRRNGKA---SKRVG 45
           M++   L YG P    ++   +KQQ  RN  +         M+G R R+G     SKRVG
Sbjct: 1   MSSTASLGYGAPTCFNNVHHTKKQQAMRNSFLSNKHNSVRVMKGWRGRHGNTNNTSKRVG 60

Query: 46  VTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLG 105
           +  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+AIY PHEGGYEGRYL+RL+  G
Sbjct: 61  IVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALAIYPPHEGGYEGRYLSRLKRQG 115

Query: 106 YYFLDLSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVW 160
           YYFLDL+ARGLGDPETTLTK++PVCP     QPIARWYFPPEVDYRL ALPP+AKGLVVW
Sbjct: 116 YYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYFPPEVDYRLEALPPNAKGLVVW 175

Query: 161 IIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 214
           IIEAKVLSK+ELQFLALLPTLRP VRVI ECGNWRKFMWKPLKEIAGLT    A
Sbjct: 176 IIEAKVLSKAELQFLALLPTLRPNVRVIVECGNWRKFMWKPLKEIAGLTTSEEA 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489764|gb|ABK96682.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 172/222 (77%), Gaps = 16/222 (7%)

Query: 8   HYGTPASIKIQQKQQPT-----------RNWMMMQGLRRRNGKASKRVGVTNCSGNSGIE 56
           H   PASI +  KQQ +           RN M++QG    N  + +R         SGI 
Sbjct: 10  HGRAPASINLHHKQQRSCSPRISVMVGNRNVMLLQGFIYNNNVSKRRPTAGLVVKCSGIG 69

Query: 57  IGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGL 116
           +GDFIGGDL+K D+G+WLSDVE+HKA+AIY PHEGGYEGRYLNRL   GYYFLDLSARGL
Sbjct: 70  LGDFIGGDLVKFDIGQWLSDVEEHKALAIYPPHEGGYEGRYLNRLIRQGYYFLDLSARGL 129

Query: 117 GDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSE 171
           GDPETTLTKV+PVCP     QPIARWYFPPEVD+RL  LPP+AKGLVVWIIEAKVLSK+E
Sbjct: 130 GDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDFRLEHLPPNAKGLVVWIIEAKVLSKAE 189

Query: 172 LQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGA 213
           LQFLALLPTLRP VRV+AECGNWRKF+WKPLKEIAGLT EGA
Sbjct: 190 LQFLALLPTLRPNVRVVAECGNWRKFVWKPLKEIAGLTAEGA 231

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460593|ref|XP_003600578.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula] gi|355489626|gb|AES70829.1| NAD(P)H-quinone oxidoreductase subunit N [Medicago truncatula]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 174/229 (75%), Gaps = 20/229 (8%)

Query: 1   MAAAPCLHYGTPASIKIQQKQQPTRNWMM----------MQGLRRRNGKASKRVGVTNCS 50
           M A+  L  G P    IQQ   P RN  M          M G R +   +++   V  CS
Sbjct: 1   MLASASLGCGGPTCSNIQQ---PPRNSFMAENHNNSVRLMMGWRGKQCNSNRSKRVVKCS 57

Query: 51  GNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD 110
             SGI +GDFIGGDL+K D+GRWLSDVE+HKA+AIYTPHEGGYEGRYL+RL+  GYYFLD
Sbjct: 58  --SGIGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLD 115

Query: 111 LSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAK 165
           L+ARGLGDPETTLTKV+PVCP     QPIARWYFPPEVDYRL ALPP+AKGLVVWIIEAK
Sbjct: 116 LTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAK 175

Query: 166 VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 214
           VLSK+ELQFLALLPTLRP VRVIAECGNWRKFMWKPL EIAGLT    A
Sbjct: 176 VLSKAELQFLALLPTLRPNVRVIAECGNWRKFMWKPLNEIAGLTTSQEA 224

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124860|ref|XP_002319440.1| predicted protein [Populus trichocarpa] gi|222857816|gb|EEE95363.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/191 (75%), Positives = 160/191 (83%), Gaps = 5/191 (2%)

Query: 28  MMMQGLRRRNGKASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYT 87
           M++QG    N  + +R         SGI +GDFIGGDL+K D+G+WLSDVE+HKA+AIY 
Sbjct: 1   MLLQGFIYNNNVSKRRPTAGLVVKCSGIGLGDFIGGDLVKFDIGQWLSDVEEHKALAIYP 60

Query: 88  PHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-----QPIARWYFPPE 142
           PHEGGYEGRYLNRL   GYYFLDLSARGLGDPETTLTKV+PVCP     QPIARWYFPPE
Sbjct: 61  PHEGGYEGRYLNRLIRQGYYFLDLSARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPE 120

Query: 143 VDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPL 202
           VD+RL  LPP+AKGLVVWIIEAKVLSK+ELQFLALLPTLRP VRV+AECGNWRKF+WKPL
Sbjct: 121 VDFRLEHLPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVVAECGNWRKFVWKPL 180

Query: 203 KEIAGLTQEGA 213
           KEIAGLT EGA
Sbjct: 181 KEIAGLTAEGA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584394|ref|XP_002532930.1| conserved hypothetical protein [Ricinus communis] gi|223527306|gb|EEF29457.1| conserved hypothetical protein [Ricinus communis]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 156/227 (68%), Positives = 172/227 (75%), Gaps = 19/227 (8%)

Query: 1   MAAAPCL-HYGTPASIKIQQKQQPTRNWMMMQGLRRRN--------GKASKR-VGVTNCS 50
           MAAA CL H GTPA   +QQ Q  T   M+ +   ++N         K+ KR VGV  CS
Sbjct: 1   MAAATCLQHVGTPAWTNLQQ-QNSTSYSMVARMTGKKNLKLLGLGTSKSKKRAVGVVRCS 59

Query: 51  GNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLD 110
           G    +        L+K DL +WLSDVE+HKA+AIYTPHEGGYEGRY  RLRY GYYFLD
Sbjct: 60  GIGIGDFIGGD---LVKFDLEQWLSDVEEHKALAIYTPHEGGYEGRYFTRLRYQGYYFLD 116

Query: 111 LSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAK 165
           L+ARGLGDPETTLTK++PVCP     QPIARWYFPPEVDYRLAALPP AKGLVVWIIEAK
Sbjct: 117 LTARGLGDPETTLTKIHPVCPAHVGKQPIARWYFPPEVDYRLAALPPDAKGLVVWIIEAK 176

Query: 166 VLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEG 212
           VLSK+ELQFLALLP+LRPKVRVIAECGNWRK MWKPLKEIAGLT E 
Sbjct: 177 VLSKAELQFLALLPSLRPKVRVIAECGNWRKVMWKPLKEIAGLTAEA 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807976|ref|NP_001242714.1| uncharacterized protein LOC100777422 [Glycine max] gi|255639899|gb|ACU20242.1| unknown [Glycine max]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/195 (75%), Positives = 164/195 (84%), Gaps = 14/195 (7%)

Query: 29  MMQGLRRRNGK---ASKRV-GVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIA 84
           +++G R R+G     SKRV GV  C G     +GDFIGGDL+K DLGRWLSDVE+HKA+A
Sbjct: 3   VVKGWRGRHGNNCNTSKRVVGVVQCRG-----LGDFIGGDLIKFDLGRWLSDVEEHKALA 57

Query: 85  IYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-----QPIARWYF 139
           IY PHEGGYEGRYL+RL+  GYYFLDL+ARGLGDPETTLTK++PVCP     QPIARWYF
Sbjct: 58  IYPPHEGGYEGRYLSRLKRQGYYFLDLTARGLGDPETTLTKIHPVCPPHVGKQPIARWYF 117

Query: 140 PPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMW 199
           PPEVDYRL ALPP+AKGLVVWIIEAKVLSK+ELQFLALLPTLRP VRVIAECG+WRKFMW
Sbjct: 118 PPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGDWRKFMW 177

Query: 200 KPLKEIAGLTQEGAA 214
           KPLKEIAGLT    A
Sbjct: 178 KPLKEIAGLTTSEEA 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478527|ref|XP_002275876.2| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N [Vitis vinifera] gi|297745733|emb|CBI15789.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/156 (87%), Positives = 146/156 (93%), Gaps = 5/156 (3%)

Query: 59  DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118
           D +GGDL+K DLGRWLSDVE+HKA+AIY+PHEGGYEGRYLNRLRY GYYFLDLSARGLGD
Sbjct: 27  DLVGGDLVKLDLGRWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 86

Query: 119 PETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQ 173
           PETTLT+++PVCP     QPIARWYFPPEVDYRL+ LPP+AKGLVVWIIEAKVLSKSELQ
Sbjct: 87  PETTLTEIHPVCPAHVGKQPIARWYFPPEVDYRLSLLPPNAKGLVVWIIEAKVLSKSELQ 146

Query: 174 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLT 209
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIA LT
Sbjct: 147 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAALT 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237153|ref|NP_200634.1| oxidoreductase [Arabidopsis thaliana] gi|8777327|dbj|BAA96917.1| unnamed protein product [Arabidopsis thaliana] gi|19347863|gb|AAL85990.1| unknown protein [Arabidopsis thaliana] gi|21280987|gb|AAM45047.1| unknown protein [Arabidopsis thaliana] gi|332009642|gb|AED97025.1| oxidoreductase [Arabidopsis thaliana]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 145/167 (86%), Gaps = 5/167 (2%)

Query: 50  SGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFL 109
           +G     I D+IGGDL+KPD+G+WL DVE+HKAIAIY PHEGGYEGRYLNRL+  GYYFL
Sbjct: 42  TGVKCSSIADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQGYYFL 101

Query: 110 DLSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEA 164
           D+SARGLGDPETTL K YPVCP     QPIARWY+PPEVDYRLAALPPSAKGLVVW++EA
Sbjct: 102 DISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVWVLEA 161

Query: 165 KVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQE 211
           KVLSKSELQFLALLP+LRP VRVIAECGNWRKF+WKPL EIA L  +
Sbjct: 162 KVLSKSELQFLALLPSLRPNVRVIAECGNWRKFVWKPLAEIANLAAQ 208

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126207|ref|XP_003564780.1| PREDICTED: NAD(P)H-quinone oxidoreductase subunit N-like [Brachypodium distachyon]

 Score =  275 bits (704), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 145/161 (90%), Gaps = 5/161 (3%)

Query: 59  DFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGD 118
           DF+GGDL+KPDLGRWL DVEKHKA+AIY PHEGGYEGRYLNRLRY GYYFLDLSARGLGD
Sbjct: 48  DFVGGDLVKPDLGRWLEDVEKHKALAIYPPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 107

Query: 119 PETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQ 173
           PE+TLTK++PVCP     QPIARWYFPPEVDYRL+ L P AKGLVVW++EAKVLSK+ELQ
Sbjct: 108 PESTLTKIHPVCPPSLGRQPIARWYFPPEVDYRLSLLHPDAKGLVVWVLEAKVLSKAELQ 167

Query: 174 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQEGAA 214
           FLA+LP LRPKVRVIAECGNWRKF+WKPLK+I+GL  +  A
Sbjct: 168 FLAMLPDLRPKVRVIAECGNWRKFIWKPLKQISGLEPDPDA 208

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2161263	209	NdhN "NADH dehydrogenase-like	0.780	0.799	0.668	1.5e-58

TAIR|locus:2161263 NdhN "NADH dehydrogenase-like complex N" [Arabidopsis thaliana (taxid:3702)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 119/178 (66%), Positives = 132/178 (74%)

Query:    39 KASKRVGVTNCSGNSGIEIGDFIGGDLLKPDLGRWLSDVEKHKAIAIYTPHEXXXXXXXX 98
             K  +  GV  CS      I D+IGGDL+KPD+G+WL DVE+HKAIAIY PHE        
Sbjct:    37 KRRRSTGV-KCSS-----IADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYL 90

Query:    99 XXXXXXXXXXXDLSARGLGDPETTLTKVYPVCP-----QPIARWYFPPEVDYRLAALPPS 153
                        D+SARGLGDPETTL K YPVCP     QPIARWY+PPEVDYRLAALPPS
Sbjct:    91 NRLKMQGYYFLDISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPS 150

Query:   154 AKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGLTQE 211
             AKGLVVW++EAKVLSKSELQFLALLP+LRP VRVIAECGNWRKF+WKPL EIA L  +
Sbjct:   151 AKGLVVWVLEAKVLSKSELQFLALLPSLRPNVRVIAECGNWRKFVWKPLAEIANLAAQ 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       195   0.00078  111 3  11 22  0.47    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  183 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.22u 0.16s 16.38t   Elapsed:  00:00:00
  Total cpu time:  16.22u 0.16s 16.38t   Elapsed:  00:00:00
  Start:  Tue May 21 04:00:45 2013   End:  Tue May 21 04:00:45 2013

GO:0016020 "membrane" evidence=IEA

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010258 "NADH dehydrogenase complex (plastoquinone) assembly" evidence=IMP

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=TAS

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	214
pfam11909	154	pfam11909, NdhN, NADH-quinone oxidoreductase cyano	2e-71

>gnl|CDD|152344 pfam11909, NdhN, NADH-quinone oxidoreductase cyanobacterial subunit N

 Score =  213 bits (545), Expect = 2e-71
 Identities = 72/147 (48%), Positives = 95/147 (64%), Gaps = 12/147 (8%)

Query: 71  GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVC 130
            ++  D+EK  A+A+Y P EGGYEGRYL RLR  GY  L  SARGLGDPE  LT+++ V 
Sbjct: 8   RKFRRDLEKAGALAVYAPLEGGYEGRYLRRLRAAGYRTLITSARGLGDPEAFLTQLHGVR 67

Query: 131 P-----QPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALL 178
           P     Q I R       +Y PP++ Y L  LPP AKGLV+W++E +VLSKSEL++L  L
Sbjct: 68  PPHLGKQSIGRNAAVGEVYYVPPQLGYYLEELPPKAKGLVLWLLEGQVLSKSELEYLCDL 127

Query: 179 PTLRPKVRVIAECGNWRKFMWKPLKEI 205
           P   P+++V+ E G  R F W+PL + 
Sbjct: 128 PQREPRLKVVVEMGGDRSFRWQPLADA 154

The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. Homologues of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The cyanobacterial NDH-1 complex contains additional subunits, NdhM and NdhN, compared with the minimal set of the bacterial enzyme and these seem to be specific for thylakoid-located NDH-1 of photosynthetic organisms. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
PF11909	154	NdhN: NADH-quinone oxidoreductase cyanobacterial s	100.0
cd05797	157	Ribosomal_L10 Ribosomal protein L10 family, L10 su	85.62
PRK00099	172	rplJ 50S ribosomal protein L10; Reviewed	81.28

>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain

Probab=100.00  E-value=3.2e-79  Score=503.26  Aligned_cols=135  Identities=57%  Similarity=1.007  Sum_probs=132.7

Q ss_pred             hhHHHHHHhcceeEEecCCCCCchhhhhhHhhhcCceEEEeccCCCCChhhhhhhcCCCCC-----Cce-------eEEe
Q 028057           71 GRWLSDVEKHKAIAIYTPHEGGYEGRYLNRLRYLGYYFLDLSARGLGDPETTLTKVYPVCP-----QPI-------ARWY  138 (214)
Q Consensus        71 ~~FirDLEk~GaLAvyaPlEGG~EGRy~RRLRaaGY~t~~~SARGLGDpeayLt~vHGVRP-----q~i-------~v~~  138 (214)
                      .+|+|||||+||||||+|+||||||||+||||++||+|+++|||||||||+|||++|||||     |+|       +|||
T Consensus         8 ~~f~rdlEk~gaLavy~PlEGG~EgRy~RRLRa~GY~t~~~SArGLGD~~ayLt~~HGVRPpHLGk~~ig~~aavG~v~~   87 (154)
T PF11909_consen    8 KKFIRDLEKSGALAVYAPLEGGYEGRYLRRLRAAGYRTLIISARGLGDPEAYLTKVHGVRPPHLGKQSIGRGAAVGEVYY   87 (154)
T ss_pred             hHHHHHHHHcCceEEEcCCcCchhHHHHHHHHhcCceEEEecccCCCCHHHHHhccCCCCCCCCCccccccccccceeEE
Confidence            5899999999999999999999999999999999999999999999999999999999999     888       8999


Q ss_pred             eCcchhhhhhcCCCCCcceEEEEEeceecCHHHHHHHHcCCCCCCCeEEEEEeCCeeeeeecchHHH
Q 028057          139 FPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEI  205 (214)
Q Consensus       139 vpP~v~yqL~~LPp~~KgLVLWiiEG~VLS~~EL~~L~~Lp~~ePrvKVVvEmGG~R~frWqPL~~~  205 (214)
                      +||+++|||++|||++||||||||||||||+|||+||++||++||||||||||||||+||||||+++
T Consensus        88 ~pP~~~y~Le~Lp~~~KglvLWiiEG~vLS~~El~~L~~Lp~~ePrvKvVvE~Gg~R~~rW~pL~~~  154 (154)
T PF11909_consen   88 VPPIVNYQLENLPPKSKGLVLWIIEGQVLSRQELEYLCNLPQREPRVKVVVEMGGDRSFRWQPLKEI  154 (154)
T ss_pred             eCchhhhhHhhcCCCCCcEEEEEEeccccCHHHHHHHHhccccCCCeEEEEEeCCceeEEeeecccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999875

The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane

>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10

Probab=85.62  E-value=0.48  Score=37.54  Aligned_cols=26  Identities=35%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             eEEEEEeceecCHHHHHHHHcCCCCC
Q 028057          157 LVVWIIEAKVLSKSELQFLALLPTLR  182 (214)
Q Consensus       157 LVLWiiEG~VLS~~EL~~L~~Lp~~e  182 (214)
                      +.-=++||++||.+|++.|++||++|
T Consensus       105 ~~gg~~eg~~l~~~~v~~la~LPs~e  130 (157)
T cd05797         105 IKGGVVEGKVLDAEEVKALAKLPSRE  130 (157)
T ss_pred             EEEEEECCEecCHHHHHHHhcCCCHH
Confidence            34457899999999999999999865

L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in

>PRK00099 rplJ 50S ribosomal protein L10; Reviewed

Probab=81.28  E-value=0.93  Score=36.71  Aligned_cols=26  Identities=38%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             eEEEEEeceecCHHHHHHHHcCCCCC
Q 028057          157 LVVWIIEAKVLSKSELQFLALLPTLR  182 (214)
Q Consensus       157 LVLWiiEG~VLS~~EL~~L~~Lp~~e  182 (214)
                      +.-=++||++||.+|++.|++||.++
T Consensus       106 l~gg~~eg~~l~~~~i~~la~LPs~~  131 (172)
T PRK00099        106 IKGGAIEGKVLDAEEVKALAKLPSRE  131 (172)
T ss_pred             EEEEEECCEEcCHHHHHHHhcCCCHH
Confidence            33457899999999999999999864

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
2j01_J	173	50S ribosomal protein L10; ribosome, tRNA, paromom	82.67

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00