Citrus Sinensis ID: 028058

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFCAY
Secondary Structure (PSIPRED)
cccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHcccccccccccccccccccEEEHHHcccEEEEEEccccEEEEEEEEEEEccccEEEEEEEEcccccccccEEEcccccccccEEEEccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEccccccccccccccccEccccccccccccccEEEEEccHHHcccEEccccccccccccccEEEcccccEEEEcccccccccHHccEEEccccccccccEEcccccEEEEHHHHHccEEEEcccHHcccEEEEEEEEccccEEEEEEEcHHHcccccHEEEHHcccEcccEEEEcccHHHHcccEEEccccEEEEEEEEccccccc
Coil and Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrngnlqyamctfkppsknqelfdelgfkdkfsvnsaEENSREIAEVKEEkreeekdgsdgssekvkLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVrpnllsgepeRLLLEDICQVGDVVLIedesvmendfKMVRLDTLvcfhlhqrrsfcay
Flexible Loop (DISEMBL)
MGLEVRVSRMSEcissiplsnsvpvtkirtlsgskwrpkngsvrnGNLQYAMCTFKPPSKNQELFDELGFKDkfsvnsaeensreiaevkeekreeekdgsdgssekvklrrgrqvmrrsNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPnllsgeperLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFhlhqrrsfcay
Low Complexity Region (SEG)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSReiaevkeekreeekdgsdgssekVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFCAY
Disordered region (IsUnstruct)
*********************************************GNLQYAMCTF*****************************************************************NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFC**
Disordered Region (DISOPRED)
****VRVSRMSECISSIPLSNSVPVT********************************SKNQELFDELGFKDKF***********************************************LLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFCA*
Disordered Region (DISEMBL)
**********SECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSV**************************************QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFCAY
Disordered Region (DISPRO)
*GLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFC**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLEVRVSRMSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSVRNGNLQYAMCTFKPPSKNQELFDELGFKDKFSxxxxxxxxxxxxxxxxxxxxxxxxGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHLHQRRSFCAY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
225439715	377	PREDICTED: uncharacterized protein LOC10	0.892	0.506	0.421	5e-38
147840953	377	hypothetical protein VITISV_011642 [Viti	0.892	0.506	0.421	6e-38
359481313	332	PREDICTED: uncharacterized protein LOC10	0.887	0.572	0.422	1e-37
356568220	382	PREDICTED: uncharacterized protein LOC10	0.514	0.287	0.660	4e-35
449502678	473	PREDICTED: uncharacterized LOC101206450	0.607	0.274	0.569	1e-34
449449956	473	PREDICTED: uncharacterized protein LOC10	0.607	0.274	0.569	1e-34
118487679	257	unknown [Populus trichocarpa]	0.588	0.490	0.607	2e-34
224091128	347	predicted protein [Populus trichocarpa]	0.565	0.348	0.626	2e-34
255575602	149	hypothetical protein RCOM_1058350 [Ricin	0.448	0.644	0.75	1e-33
108708000	212	expressed protein [Oryza sativa Japonica	0.434	0.438	0.688	2e-29

>gi|225439715|ref|XP_002268101.1| PREDICTED: uncharacterized protein LOC100261869 isoform 1 [Vitis vinifera] gi|297735530|emb|CBI18024.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/247 (42%), Positives = 141/247 (57%), Gaps = 56/247 (22%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSV------------RNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSTLLLNSTVRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLD 198
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ L+
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLGLE 235

Query: 199 TLVCFHL 205
           TLV +++
Sbjct: 236 TLVGYNV 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840953|emb|CAN71020.1| hypothetical protein VITISV_011642 [Vitis vinifera]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/247 (42%), Positives = 141/247 (57%), Gaps = 56/247 (22%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSV------------RNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSXLLLNSTVRIRNLGFTTRDWNPRNHAKPSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSXSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLD 198
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ L+
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLGLE 235

Query: 199 TLVCFHL 205
           TLV +++
Sbjct: 236 TLVGYNV 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481313|ref|XP_003632606.1| PREDICTED: uncharacterized protein LOC100261869 isoform 2 [Vitis vinifera]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 139/246 (56%), Gaps = 56/246 (22%)

Query: 10  MSECISSIPLSNSVPVTKIRTLSGSKWRPKNGSV------------RNGN---------- 47
           M +C  S  L NS    +    +   W P+N +             RNG           
Sbjct: 1   MCDCAPSTLLLNSTVRIRNLGFTTRDWNPRNHAKLSTFCNSHLIFHRNGGSRLISAEIDA 60

Query: 48  LQYAMCTFKPPSKNQELFDELGFKDKF---------SVNSAEENSREIAEVKE-EKREEE 97
           L    C    P++      ELGFKD+           V+S+  ++ +  E++E E R  E
Sbjct: 61  LNSTTCVRAIPNRG-----ELGFKDEGKRDFGFETKGVDSSTSSAFDFLELEEQEGRTGE 115

Query: 98  K-------------------DGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGF 138
           K                   +G++   E++ LR GRQVMRRSN+LAKQVISI+SA+SLGF
Sbjct: 116 KSAGNPEDEDLVRVGGGSELEGAEKVDERLGLRSGRQVMRRSNMLAKQVISIRSALSLGF 175

Query: 139 VSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLD 198
           VSQLWVDTTSW+VLV+EVRPNLLSGE ER LLED+ +VGDVVL++DESVM+N++KM+ L+
Sbjct: 176 VSQLWVDTTSWMVLVIEVRPNLLSGELERFLLEDVSRVGDVVLVQDESVMDNEYKMLGLE 235

Query: 199 TLVCFH 204
           TLV  +
Sbjct: 236 TLVSTY 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568220|ref|XP_003552311.1| PREDICTED: uncharacterized protein LOC100806448 [Glycine max]

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/115 (66%), Positives = 97/115 (84%), Gaps = 5/115 (4%)

Query: 91  EEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWV 150
           +E+ E EK G      K+++RRG++V+RRSNLLAKQVISI SA+SLGFVSQLWVDT+SW+
Sbjct: 140 DEEGENEKFGG-----KLRVRRGKEVIRRSNLLAKQVISIHSALSLGFVSQLWVDTSSWM 194

Query: 151 VLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHL 205
           VL VEVRPNLLSG+ E+ LL+DI QVGDVVL++DESV +N+FKMV L+TLV + +
Sbjct: 195 VLFVEVRPNLLSGDSEKFLLDDISQVGDVVLVQDESVTDNEFKMVGLETLVGYKV 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502678|ref|XP_004161711.1| PREDICTED: uncharacterized LOC101206450 [Cucumis sativus]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 7/137 (5%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVM 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QVGDVVL+ DE+VM
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVLVHDETVM 322

Query: 189 ENDFKMVRLDTLVCFHL 205
           +NDFKM  ++TLV + +
Sbjct: 323 DNDFKMAGMETLVGYRV 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449956|ref|XP_004142730.1| PREDICTED: uncharacterized protein LOC101206450 [Cucumis sativus]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/137 (56%), Positives = 101/137 (73%), Gaps = 7/137 (5%)

Query: 69  GFKDKFSVNSAEENSREIAEVKEEKREEEKDGSDGSSEKVKLRRGRQVMRRSNLLAKQVI 128
           G K + +   + E  R +  +++E  E E       + KV LR+ RQVMRRSN+LAKQVI
Sbjct: 210 GKKKRLNSERSSEGERNLVPIEDEDAEIE-------NGKVALRKRRQVMRRSNMLAKQVI 262

Query: 129 SIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVM 188
           SIQSA+SLGFVSQLWVDT++W+V  +EV+PNLLSGE E  LLEDI QVGDVVL+ DE+VM
Sbjct: 263 SIQSALSLGFVSQLWVDTSAWMVKFLEVKPNLLSGESEWFLLEDISQVGDVVLVHDETVM 322

Query: 189 ENDFKMVRLDTLVCFHL 205
           +NDFKM  ++TLV + +
Sbjct: 323 DNDFKMAGMETLVGYRV 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487679|gb|ABK95664.1| unknown [Populus trichocarpa]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 107/135 (79%), Gaps = 9/135 (6%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDT 199
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QVGDVVL+EDE+VM+ + KM+ L+T
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQVGDVVLVEDENVMDTELKMIGLET 207

Query: 200 LVCFHLHQRRSFCAY 214
           LV   +H    +CA+
Sbjct: 208 LVRVTVH----WCAH 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091128|ref|XP_002309189.1| predicted protein [Populus trichocarpa] gi|222855165|gb|EEE92712.1| predicted protein [Populus trichocarpa]

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/126 (62%), Positives = 103/126 (81%), Gaps = 5/126 (3%)

Query: 85  EIAEVKEEKRE--EEKDGSDGSSEKVKLR---RGRQVMRRSNLLAKQVISIQSAMSLGFV 139
           +I E+K+ +++  EE+D      E+ K+R   RG+QV+RRS++LAKQVISIQSA+SLGFV
Sbjct: 88  DILELKDGEKDGKEEQDLVAVEKERNKIRNGRRGKQVIRRSSILAKQVISIQSALSLGFV 147

Query: 140 SQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVGDVVLIEDESVMENDFKMVRLDT 199
           SQ+WVDT SWVVLVVEVRPNLLSGE ER LLED+ QVGDVVL+EDE+VM+ + KM+ L+T
Sbjct: 148 SQIWVDTKSWVVLVVEVRPNLLSGESERFLLEDVSQVGDVVLVEDENVMDTELKMIGLET 207

Query: 200 LVCFHL 205
           LV + +
Sbjct: 208 LVGYRV 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575602|ref|XP_002528701.1| hypothetical protein RCOM_1058350 [Ricinus communis] gi|223531873|gb|EEF33690.1| hypothetical protein RCOM_1058350 [Ricinus communis]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 87/96 (90%)

Query: 110 LRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL 169
           LRRG+QV+RRSNLLAKQVISI SA++LGFVSQ+WVD  SW+VLVVEVRPNLLSGE ERLL
Sbjct: 3   LRRGKQVIRRSNLLAKQVISIHSALNLGFVSQIWVDIASWMVLVVEVRPNLLSGESERLL 62

Query: 170 LEDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHL 205
           LED+ +VGDVVL+EDE+V+EN+ KMV L+TLV + +
Sbjct: 63  LEDVRRVGDVVLVEDETVLENEIKMVGLETLVGYSI 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108708000|gb|ABF95795.1| expressed protein [Oryza sativa Japonica Group]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 78/93 (83%)

Query: 111 RRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
           R+ RQ+ RRS LLAKQVIS+ SA SLGFVSQLWVD  SW+V +VEVRP+LLSGE E+ L 
Sbjct: 119 RKRRQMARRSGLLAKQVISVSSARSLGFVSQLWVDAASWIVALVEVRPSLLSGEAEKFLF 178

Query: 171 EDICQVGDVVLIEDESVMENDFKMVRLDTLVCF 203
           EDI QVGDVVL+EDE+V+EN+FK+V L +L C+
Sbjct: 179 EDIYQVGDVVLVEDETVVENEFKLVGLHSLCCY 211

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
TAIR|locus:2064184	328	AT2G38570 "AT2G38570" [Arabido	0.439	0.286	0.663	7.1e-29

TAIR|locus:2064184 AT2G38570 "AT2G38570" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 63/95 (66%), Positives = 83/95 (87%)

Query:   112 RG-RQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLL 170
             RG +Q   RSNL+AKQV+SIQSA+SLGF+SQLWVDTTSW+VLVV+V+P+LLSGE ER LL
Sbjct:   112 RGFKQSTTRSNLVAKQVVSIQSALSLGFISQLWVDTTSWLVLVVDVKPSLLSGESERFLL 171

Query:   171 EDICQVGDVVLIEDESVMENDFKMVRLDTLVCFHL 205
              DI +VGDVVL+++E+V++ +FKMV L+TLV + +
Sbjct:   172 TDIVRVGDVVLVDNETVLDTEFKMVGLETLVGYRV 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      214       191   0.00094  110 3  11 22  0.42    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.16u 0.09s 15.25t   Elapsed:  00:00:01
  Total cpu time:  15.16u 0.09s 15.25t   Elapsed:  00:00:01
  Start:  Tue May 21 04:01:09 2013   End:  Tue May 21 04:01:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
TIGR02888	76	spore_YlmC_YmxH sporulation protein, YlmC/YmxH fam	99.87
COG1873	87	Protein implicated in RNA metabolism, contains PRC	99.46
PF05239	79	PRC: PRC-barrel domain; InterPro: IPR007903 The PR	99.31
COG3881	176	PRC-barrel domain containing protein [General func	98.04
COG3881	176	PRC-barrel domain containing protein [General func	97.69
cd00226	246	PRCH Photosynthetic reaction center (RC) complex,	93.99

>TIGR02888 spore_YlmC_YmxH sporulation protein, YlmC/YmxH family

Probab=99.87  E-value=2.5e-22  Score=149.41  Aligned_cols=67  Identities=25%  Similarity=0.410  Sum_probs=60.5

Q ss_pred             EeccccCceeEeccCcceeeee--eeEEEECCCCEEEEEEECCC-----CCCCCC-eEEeccccceec-cEEEEec
Q 028058          118 RRSNLLAKQVISIQSAMSLGFV--SQLWVDTTSWVVLVVEVRPN-----LLSGEP-ERLLLEDICQVG-DVVLIED  184 (214)
Q Consensus       118 r~SeL~~KEVINi~dG~RLG~V--~DL~VD~~sG~V~AIiVp~~-----~f~ge~-~~IPWe~IkKIG-DVILVe~  184 (214)
                      |+|||++|||||++||+|||+|  .|+++|+++|+|.||++|++     ||+++. ..|||++|+||| |+|||+.
T Consensus         1 r~seL~~keVIni~~G~~lG~v~~~Dl~iD~~~G~I~aiIi~~~~~~~~~~~~~~~~~Ipw~~I~kIG~DvIlV~~   76 (76)
T TIGR02888         1 RLSDLRGKEIINVNDGERLGVIGNIDLEIDEEDGRILSLIIPGKGKKFGLFSKGEEIEIPWDAIKKIGSDVILVDV   76 (76)
T ss_pred             CHHHccCCCEEECCCCcEeeccccceEEEECCCCEEEEEEEeCCCcEEEeecCCcEEEEEhhhccEECCCEEEEeC
Confidence            5899999999999999999999  79999999999999999973     455544 579999999999 9999984

Members of this family belong to the broader family of PRC-barrel domain proteins (see Pfam model pfam05239), but are found only in endospore-forming bacteria of the Firmicutes lineage. Most such species have exactly two members of this family and all have at least one; the function is unknown. One of two members from Bacillus subtilis, YmxH, is strongly induced by the mother cell-specific sigma-E factor.

>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]

Probab=99.46  E-value=1.4e-13  Score=104.83  Aligned_cols=70  Identities=29%  Similarity=0.386  Sum_probs=59.6

Q ss_pred             ceeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCC---CC--CCC-CeEEeccccceeccEEEEecC
Q 028058          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN---LL--SGE-PERLLLEDICQVGDVVLIEDE  185 (214)
Q Consensus       115 qmmr~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~---~f--~ge-~~~IPWe~IkKIGDVILVe~~  185 (214)
                      .||++|+|.+|+|+|. +|++||.|+|+.+|.++|+|.++.|.++   +|  +++ ...|||+.|++|||.|||...
T Consensus         4 ~~~~~s~l~gk~V~~~-~G~~vG~V~dv~ld~~~g~i~~l~v~~~~~~l~~~~k~~~v~IP~~~V~aIGd~III~~~   79 (87)
T COG1873           4 EMMRLSELLGKEVITN-DGKYVGTVSDVVLDIKEGKITGLLVIPTNKGLFLFGKGKEVIVPYEYVKAIGDIIIIKDV   79 (87)
T ss_pred             hhheHHHhcCcEEEcC-CCeEEEEEEeEEEEccCCcEEEEEEecCCccccccCCCcEEEEehhHeEEecCEEEEech
Confidence            4789999999999999 9999999999999999999999999754   44  333 346999999999966666543

>PF05239 PRC: PRC-barrel domain; InterPro: IPR007903 The PRC-barrel is an all beta barrel domain found in photosynthetic reaction centre subunit H of the purple bacteria

Probab=99.31  E-value=3.7e-12  Score=90.36  Aligned_cols=72  Identities=19%  Similarity=0.379  Sum_probs=62.9

Q ss_pred             ceeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCC-CCC--CCCeEEeccccceec-cEEEEecCCc
Q 028058          115 QVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLS--GEPERLLLEDICQVG-DVVLIEDESV  187 (214)
Q Consensus       115 qmmr~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~-~f~--ge~~~IPWe~IkKIG-DVILVe~~~~  187 (214)
                      .+++.|||.+++|+|.+ |+++|.|.|+.+|+.+|+|.++++..+ +|+  ++...|||+++.++| |.|+|+....
T Consensus         2 ~~~~~s~l~g~~V~~~~-G~~iG~V~di~id~~~~~i~~i~v~~~~~~~~~~~~~~iP~~~~v~~~~~~i~v~~~~~   77 (79)
T PF05239_consen    2 DEFRLSELIGKEVIDRD-GEKIGKVKDIVIDPKTGKIVGIVVSSGGFFGIGGKKVLIPWDQIVDIGGDRIIVDPPKE   77 (79)
T ss_dssp             CHGCHHHHTTSEEEETT-SCEEEEEEEEEEETTTTEEEEEEEEETTSTCSSSEEEEEEGGEEEEECTTEEEESSSTG
T ss_pred             CeEEhHHccCCEEEcCC-CCEEEEEEEEEEeCCCCCEEEEEEcCCCccCcCCcEEEEcCeEeEEecCCEEEEcCCCC
Confidence            46889999999999998 999999999999999999999999876 332  344579999888888 9999998754

PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the C terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [].; PDB: 2QGG_A 3H9N_A 2WJN_H 2PRC_H 5PRC_H 2X5V_H 1DXR_H 1R2C_H 3G7F_H 1PRC_H ....

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=98.04  E-value=1.4e-05  Score=68.44  Aligned_cols=68  Identities=16%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             cccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCC---CCCeEEeccccceec-cEEEEecCCcc
Q 028058          121 NLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLS---GEPERLLLEDICQVG-DVVLIEDESVM  188 (214)
Q Consensus       121 eL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~---ge~~~IPWe~IkKIG-DVILVe~~~~~  188 (214)
                      ++++.++++-.+|.+||.|.|+.+|.++|+|+|..+..+||+   +....|+=.+-.++| |.++|..+...
T Consensus        85 e~m~mk~~lt~dG~iLGmveDVyFdek~gkIvgyevS~GffADlt~gRkiira~~~v~vgKD~~ivs~~~~~  156 (176)
T COG3881          85 EIMNMKVILTYDGTILGMVEDVYFDEKTGKIVGYEVSRGFFADLTSGRKIIRAGNYVLVGKDLFIVSNDKNL  156 (176)
T ss_pred             HhhcCceEeccCCcEeeeeeEEEEeccCCcEEEEEecCchhhhccCCceEEECCCcEEecccEEEecCCcch
Confidence            567778888999999999999999999999999999999995   346689999999999 99999887654

>COG3881 PRC-barrel domain containing protein [General function prediction only]

Probab=97.69  E-value=0.00011  Score=63.11  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=64.2

Q ss_pred             eeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCC-CCCCCCeEEeccccceec-cEEEEecCCccc
Q 028058          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN-LLSGEPERLLLEDICQVG-DVVLIEDESVME  189 (214)
Q Consensus       116 mmr~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~-~f~ge~~~IPWe~IkKIG-DVILVe~~~~~e  189 (214)
                      |++--||.+.+|++.+||++||.|.|+.+|.+.++|.++.+-.+ +| ..-..+|..+|.-|| |.|+...+...-
T Consensus         1 Mit~~EleG~pVys~~tg~~lg~V~Dvif~~~gdrvl~flvnkggwf-h~h~~lp~~~i~Sig~k~Imi~vp~~~~   75 (176)
T COG3881           1 MITSRELEGAPVYSTKTGEKLGAVDDVIFNFSGDRVLGFLVNKGGWF-HKHCCLPVKNIVSIGSKMIMIYVPYKGS   75 (176)
T ss_pred             CccchhhcCCceEEecccccccceeeEEEecCCCeEEEEEEecCcEE-eeeeeeeecceeeeccceEEEeccccce
Confidence            56677999999999999999999999999999999999999765 44 455689999999999 999998877644

>cd00226 PRCH Photosynthetic reaction center (RC) complex, subunit H; RC is an integral membrane protein-pigment complex which catalyzes light-induced reduction of ubiquinone to ubiquinol, generating a transmembrane electrochemical gradient of protons used to produce ATP by ATP synthase

Probab=93.99  E-value=0.22  Score=45.14  Aligned_cols=61  Identities=23%  Similarity=0.258  Sum_probs=50.0

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEEe
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILVe  183 (214)
                      .|+++..|+.. ||+.+|.|.|+|+|..+|.|.-++|-.+. ++++.-|| -.+.+|- +.|.|+
T Consensus       146 ~DprGl~V~g~-DGevvGtV~Dv~vD~~e~~iRYLeVdtg~-~gkkVLLP-i~~~rId~~~V~V~  207 (246)
T cd00226         146 VDPRGLPVVGA-DGEVAGKVTDLWVDRPEQLFRYLEVELAG-GGRTVLLP-MGFAKVKSDRVKVT  207 (246)
T ss_pred             CCCCCCEeEcC-CCcEeEEEEEEEEcCCcceEEEEEEEcCC-CCCEEEEE-eEEEEecCCEEEEe
Confidence            57999999998 99999999999999999999999997654 34555577 5556776 888887

Subunit H is positioned mainly in the cytoplasm with one transmembrane alpha helix. Provides proton transfer pathway (water channels) connecting the terminal quinone electron acceptor of RC, to the aqueous phase. Found in photosynthetic bacteria: alpha, beta, and gamma proteobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1pm3_A	97	MTH1895; unknown function, structural genomics, PS	99.74
3htr_A	120	Uncharacterized PRC-barrel domain protein; beta-ba	99.18
1eys_H	259	Photosynthetic reaction center; membrane protein c	96.48
1rzh_H	260	Reaction center protein H chain; bacterial photosy	95.89
2wjn_H	258	Reaction center protein H chain; bacteriochlorophy	95.73

>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2

Probab=99.74  E-value=3e-18  Score=129.72  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             cccccccccceeEe-ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCC----CCCC-C-CeEEeccccceec-
Q 028058          106 EKVKLRRGRQVMRR-SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPN----LLSG-E-PERLLLEDICQVG-  177 (214)
Q Consensus       106 ~~~~~~~~~qmmr~-SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~----~f~g-e-~~~IPWe~IkKIG-  177 (214)
                      -+.|+.+...||++ |+|.+|+||| .+|++||.|.|+++|+++|+|.+++++.+    +|+. + ...|||++|++|| 
T Consensus        10 ~~~~~~~~~~~Mr~~seL~Gk~Vin-~dG~~LG~V~Dv~iD~~~G~I~~lvl~~~~~~~~~g~~~~~~~IPw~~V~~IG~   88 (97)
T 1pm3_A           10 HSSGLVPRGSHMRIVEEMVGKEVLD-SSAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGD   88 (97)
T ss_dssp             ----------CEETTTTSSSCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESS
T ss_pred             ccCCCCCCCeEEEeehhCCCCEeEC-CCCCEEeEEEEEEEECCCCEEEEEEEcCCCeeccccCCCeeEEEEhhHheEECC
Confidence            35677888899999 9999999999 99999999999999999999999999875    3553 3 3579999999999 


Q ss_pred             cEEEEec
Q 028058          178 DVVLIED  184 (214)
Q Consensus       178 DVILVe~  184 (214)
                      |+||++.
T Consensus        89 dvIi~~~   95 (97)
T 1pm3_A           89 KILLKGP   95 (97)
T ss_dssp             SEEECCT
T ss_pred             EEEEEec
Confidence            8777654

>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}

Probab=99.18  E-value=3.1e-11  Score=93.92  Aligned_cols=75  Identities=9%  Similarity=0.080  Sum_probs=62.3

Q ss_pred             ccccccceeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECC-CCCC-CCC-eEEeccccceec---cEEEE
Q 028058          109 KLRRGRQVMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRP-NLLS-GEP-ERLLLEDICQVG---DVVLI  182 (214)
Q Consensus       109 ~~~~~~qmmr~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~-~~f~-ge~-~~IPWe~IkKIG---DVILV  182 (214)
                      ..+....||+.|+|.+++|+|. +|++||.|.|++||..+|+|.+++|+. +||+ ++. ..|||.+|+ +.   +.+.|
T Consensus         7 ~~~~~~~l~~~~~l~G~~V~~~-dG~~iG~V~dv~iD~~~G~i~~~vv~~GgflG~g~~~v~ip~~~l~-~~~~~~~~~v   84 (120)
T 3htr_A            7 ETNETLKLIGSDKVQGTAVYGP-DGEKIGSIERVMIEKVSGRVSYAVLSFGGFLGIGDDHYPLPWPALK-YNVELGGYQV   84 (120)
T ss_dssp             CCCBCSSEEEHHHHTTCEEECT-TSCEEEEEEEEEEETTTCBEEEEEEEESSBTTBSCEEEEECGGGCE-EETTTTEEEC
T ss_pred             cccCCcceEehhhccCCEEEcC-CCCEEEEEEEEEEECCCCcEEEEEEECCCccCcCCEEEEeCHHHeE-EecCCCEEEe
Confidence            3466778999999999999999 999999999999999999999999985 5886 444 469999995 53   56666


Q ss_pred             ecC
Q 028058          183 EDE  185 (214)
Q Consensus       183 e~~  185 (214)
                      +..
T Consensus        85 ~~t   87 (120)
T 3htr_A           85 MVT   87 (120)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1

Probab=96.48  E-value=0.0051  Score=54.36  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=46.8

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEe--ccccceeccEEEE
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLL--LEDICQVGDVVLI  182 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IP--We~IkKIGDVILV  182 (214)
                      ++|.+..|.+. ||+++|.|.|++||..+|+|.-++|--+ |+++...||  |..|..-.+-|-|
T Consensus       149 ~dl~G~~Vya~-DGekIG~V~Dv~vD~~sG~VrYlVVdtG-~ggkkVLiPi~~~~Id~d~~~V~V  211 (259)
T 1eys_H          149 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVA-ANKKKVLLPIGFSRFDKKARKVKV  211 (259)
T ss_dssp             CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEET-TTCCEEEEEGGGCEEEGGGTEEEC
T ss_pred             CCCcCCEEEeC-CCCeeEEEEEEEEECCCCeEEEEEEEcC-CCCCcEEEecChhhccccCCEEEE
Confidence            56888999988 9999999999999999999999999877 545544445  4444442245666

>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...

Probab=95.89  E-value=0.017  Score=51.29  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=47.9

Q ss_pred             eccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEE
Q 028058          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLI  182 (214)
Q Consensus       119 ~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILV  182 (214)
                      -.++++..|... ||+++|.|.|+|||..+|+|.-++|--+  ++++.-|||.-. +|- +-|-|
T Consensus       145 ~~d~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtG--ggrkVLLP~~~~-riD~~~VyV  205 (260)
T 1rzh_H          145 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHV  205 (260)
T ss_dssp             SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEE
T ss_pred             CCCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEeC--CCCEEEeeeEEE-EEcCCeEEE
Confidence            356789999998 9999999999999999999999999765  344455899754 334 66666

>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*

Probab=95.73  E-value=0.013  Score=51.80  Aligned_cols=60  Identities=20%  Similarity=0.279  Sum_probs=47.0

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEE
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLI  182 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILV  182 (214)
                      .|+++..|... ||+++|.|.|+|||..+|+|.-++|--+. ++++.-|||.-. +|- +-|-|
T Consensus       150 ~D~~G~~Vyg~-DGe~iGsV~Dl~VD~~eg~VRYLVVdtGg-ggrkVLLP~~~~-riD~~~VyV  210 (258)
T 2wjn_H          150 VDPRGLPVVAA-DGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC-DVKKDKIVV  210 (258)
T ss_dssp             CCCTTCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC-EECSSCEEC
T ss_pred             CCCCCCEeEcC-CCCeeEEEEEEEEECCCCEEEEEEEEcCC-CCCEEEeeeEEE-EEcCCeEEE
Confidence            46789999988 99999999999999999999999996543 344445899754 334 55666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1pm3a_	78	MTH1895 {Archaeon Methanobacterium thermoautotroph	98.88
d1rzhh1	213	Photosynthetic reaction centre {Rhodobacter sphaer	96.67
d1eysh1	201	Photosynthetic reaction centre {Thermochromatium t	96.55
d2i5nh1	222	Photosynthetic reaction centre {Rhodopseudomonas v	96.54
d2f1la1	75	16S rRNA processing protein RimM, C-terminal domai	88.66

>d1pm3a_ b.41.1.2 (A:) MTH1895 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: MTH1895
domain: MTH1895
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.88  E-value=2.3e-09  Score=78.59  Aligned_cols=70  Identities=21%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             eeEeccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECC-CC-----CCCCCeEEeccccceeccEEEEecCC
Q 028058          116 VMRRSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRP-NL-----LSGEPERLLLEDICQVGDVVLIEDES  186 (214)
Q Consensus       116 mmr~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~-~~-----f~ge~~~IPWe~IkKIGDVILVe~~~  186 (214)
                      |-.+.||.+|+|++= +++-+|.|.|+++|+++|.|.++++.. ++     +.+.+..+|.++|++|||.|++..++
T Consensus         2 mRi~~dliGk~VlD~-~A~~IGkV~DvEiD~esg~vtsLiI~k~Gis~~igl~~~e~~Vp~e~V~~IGD~VlL~~~~   77 (78)
T d1pm3a_           2 MRIVEEMVGKEVLDS-SAKVIGKVKDVEVDIESQAIESLVLGKGGISEGLGLSKGETIVPYEMVKKIGDKILLKGPE   77 (78)
T ss_dssp             EETTTTSSSCEEECT-TSCEEEEEEEEEEETTTTEEEEEEEECCC---------CEEEEEGGGEEEESSSEEECCTT
T ss_pred             cchHHhHhCchhccc-ccceeeeeeeEEEcCCCCeeEEEEEcCcccchhhcccCCeEEcCHHHHhhhccEEEEeCCC
Confidence            556789999999995 899999999999999999999999954 33     23445689999999999999998664

>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.67  E-value=0.0023  Score=53.14  Aligned_cols=61  Identities=21%  Similarity=0.295  Sum_probs=51.4

Q ss_pred             eccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEEe
Q 028058          119 RSNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (214)
Q Consensus       119 ~SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILVe  183 (214)
                      =.|+++..|+.. ||+++|.|.|+|||..+|.|.-+.|.-+  +++...+||... +|. |-|.|+
T Consensus       110 ~~DprG~~V~~~-DG~kIGtV~DvwvD~~e~~vRYleV~tg--ggk~vLvP~~~a-~i~~d~V~V~  171 (213)
T d1rzhh1         110 GKNPIGLPVRGC-DLEIAGKVVDIWVDIPEQMARFLEVELK--DGSTRLLPMQMV-KVQSNRVHVN  171 (213)
T ss_dssp             SCCCTTCEEEET-TSCEEEEEEEEEEETTTTEEEEEEEECT--TSCEEEEEGGGC-EECSSCEEES
T ss_pred             CCCccCCeeEcC-CCCcceEEEEEEEECCCCcEEEEEEEeC--CCcEEEechhhe-EecCCeEEEc
Confidence            458999999995 9999999999999999999999999755  244556999765 567 888886

>d1eysh1 b.41.1.1 (H:59-259) Photosynthetic reaction centre {Thermochromatium tepidum [TaxId: 1050]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Thermochromatium tepidum [TaxId: 1050]

Probab=96.55  E-value=0.0025  Score=52.39  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec---cEEEEe
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG---DVVLIE  183 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG---DVILVe  183 (214)
                      .|+++..|+.. ||+++|.|.|+|||..+|+|.-++|--++ +++..-|||. +.+|.   +.|.|+
T Consensus        91 ~DprG~~V~~~-DG~~vGtV~Dv~vD~~e~~vRYleVdtg~-ggk~vLvP~~-~a~id~~~~~V~V~  154 (201)
T d1eysh1          91 PDPRGMTVVGL-DGEVAGTVSDVWVDRSEPQIRYLEVEVAA-NKKKVLLPIG-FSRFDKKARKVKVD  154 (201)
T ss_dssp             CCCTTCEEECS-SSCEEEEEEEEEEETTTTEEEEEEEEETT-TCCEEEEEGG-GCEEEGGGTEEECS
T ss_pred             CCcccCeeEcC-CCCEEEEEEEEEEECCCCcEEEEEEEecC-CCcEEEEeee-eeEecCCCCEEEEe
Confidence            59999999998 99999999999999999999999998664 3444458995 66675   567776

>d2i5nh1 b.41.1.1 (H:37-258) Photosynthetic reaction centre {Rhodopseudomonas viridis [TaxId: 1079]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: Photosynthetic reaction centre, H-chain, cytoplasmic domain
domain: Photosynthetic reaction centre
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=96.54  E-value=0.0017  Score=54.25  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=50.5

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccccceec-cEEEEe
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLEDICQVG-DVVLIE  183 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~IkKIG-DVILVe  183 (214)
                      .|+++..|+. .||+++|.|.|+|||..+|+|.-++|--++ +++..-+||... +|. |-+.|+
T Consensus       114 ~DprG~~V~g-~DGekIGtV~DvwVD~~e~~vRYleVetg~-ggk~vLvP~~~a-~i~~d~v~V~  175 (222)
T d2i5nh1         114 VDPRGLPVVA-ADGVEAGTVTDLWVDRSEHYFRYLELSVAG-SARTALIPLGFC-DVKKDKIVVT  175 (222)
T ss_dssp             CCCTTCEEEC-TTSCEEEEEEEEEEETTTTEEEEEEEEETT-TTEEEEEEGGGC-EECSSCEECC
T ss_pred             CCcccCeeEc-CCCCeeeEEEEEEEeCCCCeEEEEEEEeCC-CCceEeeehhhc-eecCCcEEEc
Confidence            4999999998 599999999999999999999999997664 344446899765 556 877775

>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: PRC-barrel domain
superfamily: PRC-barrel domain
family: RimM C-terminal domain-like
domain: 16S rRNA processing protein RimM, C-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.66  E-value=0.48  Score=31.82  Aligned_cols=51  Identities=24%  Similarity=0.238  Sum_probs=39.9

Q ss_pred             ccccCceeEeccCcceeeeeeeEEEECCCCEEEEEEECCCCCCCCCeEEeccc
Q 028058          120 SNLLAKQVISIQSAMSLGFVSQLWVDTTSWVVLVVEVRPNLLSGEPERLLLED  172 (214)
Q Consensus       120 SeL~~KEVINi~dG~RLG~V~DL~VD~~sG~V~AIiVp~~~f~ge~~~IPWe~  172 (214)
                      .||.+-+|+|.. |+.||.|.++ .|.-.+.+..|-.+.+-.++++.-||+.+
T Consensus         4 ~dLiG~~V~d~~-g~~lG~V~~v-~~~ga~dll~I~~~~~~~~~keiLIP~v~   54 (75)
T d2f1la1           4 HQLEGLKVIDQG-RQLLGVIDHL-LETGANDVMVVKPCAGSLDDRERLLPYTG   54 (75)
T ss_dssp             HHHTTCEEEETT-SCEEEEEEEE-ECCSSSCEEEEECCTTSSSSCCEEEECST
T ss_pred             HHcCCCEEEeCC-CCEEEEEEEE-cccCCccEEEEEeCCCCCCCeEEEEEcCc
Confidence            689999999975 9999999997 57778888888877654445555688854